Psyllid ID: psy519

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLISKCV
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccEEEEEcccccEEEcccccccccccccccEEEEEEcccccEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEccccEEEccEEEccc
Secondary Structure Prediction (SSPRO)
ccHHEEEccccccEEEEEEcccccEEEEEccccEEEEEcccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEcccccEEEEEEccccEEEEEcccEEEEccccccccccccccccEEEEEEcccccEEEccccccccccEEcccc
Coil and Loop (DISEMBL)
mdlshlnhgdhkhfiqnsfkpeTVEDVLANLESQKNLqsrylpyytsghdmtVWSVEACSKglaltgsrdtTARLWSLEQMYPlrifvghkqdvtcarfhpkityigtgsydKAVRLWsitdgasvrvfsdhvspvlsiafspcgkylasggtgsydkAVRLWsitdgasvrvfsdhvspvlsiafspcgkylasggedglvlTHELTTGRVISrfhlqehepvtsLVWSVTGetlvtgsltgtvqfygwpsaskigigvyprcaaqpvgfEAATLAANSRVRTLREMHEIVGPVVVVESFIveirpdkwyeaNLIVLDDdlkecnletysqmipvpsgiveenpliskcv
Flexible Loop (DISEMBL)
mdlshlnhgdhkhfiqnsfkPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKityigtgsyDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHeivgpvvvvESFIVEIRPDKWYEANLIVLDDDLKECNLETysqmipvpsgiveenpliskcv
Low Complexity Region (SEG)
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLISKCV
Disordered region (IsUnstruct)
*************************DVLANL***KNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIV**********
Disordered Region (DISOPRED)
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLISKCV
Disordered Region (DISEMBL)
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLISKCV
Disordered Region (DISPRO)
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLI**C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEENPLISKCV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q91WQ5	589	TAF5-like RNA polymerase	yes	N/A	0.433	0.258	0.467	2e-34
O75529	589	TAF5-like RNA polymerase	yes	N/A	0.433	0.258	0.461	4e-34
Q15542	800	Transcription initiation	no	N/A	0.433	0.19	0.435	9e-31
Q8C092	801	Transcription initiation	no	N/A	0.433	0.189	0.429	2e-30
P38129	798	Transcription initiation	yes	N/A	0.581	0.255	0.346	2e-29
P49846	704	Transcription initiation	yes	N/A	0.427	0.213	0.435	2e-28
O13282	643	Transcription initiation	yes	N/A	0.575	0.314	0.353	8e-28
O74319	642	Transcription initiation	no	N/A	0.532	0.291	0.381	9e-27
Q8YRI1	1526	Uncharacterized WD repeat	no	N/A	0.561	0.129	0.387	2e-24
Q5ZIU8	657	Katanin p80 WD40 repeat-c	no	N/A	0.566	0.302	0.307	3e-22

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct: 382 GHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS++FSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G   +    H   + S+AFSP    +AS   D  V
Sbjct: 499 SGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSV 534

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.
Mus musculus (taxid: 10090)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 91/156 (58%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW ++     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct: 382 GHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G   +    H   + S+ FSP    +AS   D  V
Sbjct: 499 SGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSV 534

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score =  134 bits (338), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 86/156 (55%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH+  VW  +    G    +G  D  ARLW+ +   PLRIF GH  DV C RFHP   Y+
Sbjct: 583 GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYV 642

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS D+ VRLW + +G  VR+F+ H  P+ S+ FSP G++LA+G T   D  V LW I 
Sbjct: 643 ATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT---DGRVLLWDIG 699

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G  V     H   V S+ FS  G+ LASG  D  V
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTV 735

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 86/156 (55%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH+  VW  +    G    +G  D  ARLW+ +   PLRIF GH  DV C R+HP   Y+
Sbjct: 584 GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYV 643

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS D+ VRLW + +G  VR+F+ H  P+ S+ FSP G++LA+G T   D  V LW I 
Sbjct: 644 ATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGAT---DGRVLLWDIG 700

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G  V     H   V S+ FS  G+ LASG  D  V
Sbjct: 701 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTV 736

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 4/208 (1%)

Query: 48  GHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH  TV+S   +      L+GS D T RLWS++    L  + GH   V    F P   Y 
Sbjct: 523 GHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYF 582

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            T S+D+  RLWS      +R+F+ H++ V  ++F P G Y+    TGS DK  R+W ++
Sbjct: 583 ATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVF---TGSSDKTCRMWDVS 639

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS 226
            G SVR+F  H +PV+SIA  P G++L++G EDG++   ++ TG+ + +        + S
Sbjct: 640 TGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYS 699

Query: 227 LVWSVTGETLVTGSLTGTVQFYGWPSAS 254
           L +S  G  L++G    TV+ +    A+
Sbjct: 700 LSYSKEGNVLISGGADHTVRVWDLKKAT 727

Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 85/154 (55%), Gaps = 4/154 (2%)

Query: 48  GHDMTVWSVEACSKGLALTG-SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V     G      S D TARLW+ +    LR+FVGH  DV C +FHP   Y+
Sbjct: 490 GHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYV 549

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS D+ VRLW    G SVR+ + H   V S+AFS CG+YLAS   GS D  + +W ++
Sbjct: 550 ATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLAS---GSVDHNIIIWDLS 606

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
           +G+ V     H S V +I FS  G  LA+ G D 
Sbjct: 607 NGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDN 640

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V     G    T S D TA+LWS + +YPLR+F GH  DV C  FHP   Y+
Sbjct: 419 GHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYV 478

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK  RLW +  G SVRVF+ H  PV ++A +P G  +AS  +   +  + LW I 
Sbjct: 479 LTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADS---EGLIHLWDIG 535

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS 226
            G  ++    H   + S++FS     L SGG D  V        R    F    + PV+S
Sbjct: 536 TGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTV--------RAWDVFKTNYNNPVSS 587

Query: 227 LVWSVTGETLVTGSL-TGTVQFYGWPSASKIGIGVYPR 263
              S+TG  +   S  T T     W ++    + +Y +
Sbjct: 588 ---SLTGSVVTPFSAKTSTFNEVNWSTSPDQMVALYTK 622

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score =  121 bits (303), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 16  QNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTAR 74
           Q  F     ED    L S K+ +S  + Y  +GH+  +W V+    G    T S D TAR
Sbjct: 414 QKEFILSCSEDGFTRLWS-KDTKSTIVKY--AGHNAPIWDVQFSPFGYYFATASHDQTAR 470

Query: 75  LWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS 134
           LW +E   PLR+FVGH+ DV C  FHP   Y+ TGS D   R+W +  G +VRVF+ H S
Sbjct: 471 LWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHHS 530

Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
           PV ++  S  G  LAS         +++W +        F  H S V S++FS   K L 
Sbjct: 531 PVSALCMSADGLSLASADESG---IIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNKILV 587

Query: 195 SGGEDGLVLTHELT 208
           SGG D  V   +LT
Sbjct: 588 SGGADTDVNFWDLT 601

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 48   GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
            GH   V SV     G  L +GS D T RLW +     L  F GH   V    F+P  + +
Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSML 1299

Query: 107  GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
             +GS D+ VRLW I+    +  F  H S V S+ FSP G  LAS   GS D+ VRLWSI+
Sbjct: 1300 ASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLAS---GSDDQTVRLWSIS 1356

Query: 167  DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP-VT 225
             G  +  F  H + V S+ FSP G  LASG  D  V    +++G+ +  + LQ H   V 
Sbjct: 1357 SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCL--YTLQGHNNWVG 1414

Query: 226  SLVWSVTGETLVTGSLTGTVQFYG 249
            S+V+S  G  L +GS   TV+ + 
Sbjct: 1415 SIVFSPDGTLLASGSDDQTVRLWN 1438

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 47  SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           +GH   + S++  +K  L + GS+  + R+W LE    LR  +GHK ++    FHP  ++
Sbjct: 60  TGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSF 119

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           + +GS D  ++LW +     +  +  H   V  + FSP GK+LAS      D  V+LW +
Sbjct: 120 VASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAAD---DHTVKLWDL 176

Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
           T G  +  F+ H  PV  + F P    LASG  D  +   +L    V+S    +E  PV 
Sbjct: 177 TAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIE-EEATPVR 235

Query: 226 SLVWSVTGETLVTGSLTGTVQFYGW 250
            ++++  G  L  G    +++ YGW
Sbjct: 236 CILFNPDGCCLY-GGFQDSLRVYGW 259

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
196006980	212	hypothetical protein TRIADDRAFT_26455 [T	0.524	0.867	0.458	8e-36
291242055	599	PREDICTED: PCAF associated factor 65 bet	0.433	0.253	0.487	2e-34
313672810	1055	wd40 repeat, subgroup [Calditerrivibrio	0.584	0.194	0.404	5e-34
348575391	589	PREDICTED: TAF5-like RNA polymerase II p	0.447	0.266	0.465	3e-33
390336476	498	PREDICTED: TAF5-like RNA polymerase II p	0.455	0.321	0.451	4e-33
194042629	589	PREDICTED: TAF5-like RNA polymerase II,	0.433	0.258	0.467	8e-33
169642580	589	Taf5l protein [Rattus norvegicus]	0.433	0.258	0.467	9e-33
19527184	589	TAF5-like RNA polymerase II p300/CBP-ass	0.433	0.258	0.467	1e-32
395531622	588	PREDICTED: TAF5-like RNA polymerase II p	0.430	0.256	0.471	1e-32
440790261	725	WD domain G-beta repeat-containing prote	0.467	0.226	0.455	1e-32

>gi|196006980|ref|XP_002113356.1| hypothetical protein TRIADDRAFT_26455 [Trichoplax adhaerens] gi|190583760|gb|EDV23830.1| hypothetical protein TRIADDRAFT_26455, partial [Trichoplax adhaerens]

 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 10/194 (5%)

Query: 25  EDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL--TGSRDTTARLWSLEQMY 82
           ED    L + ++L+   L  Y  GH   VW V+  SK L    T S DTTARLWS E  +
Sbjct: 25  EDATVKLWNTEDLKC--LVTY-RGHVYPVWDVDT-SKFLVYFATASADTTARLWSTEFTH 80

Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
           PLRIF GH   V C RFHP   YI TGS DK  RLW I +G +VR+F+ H   V+++AFS
Sbjct: 81  PLRIFAGHLDSVNCVRFHPNCNYIATGSADKTCRLWDIQNGQTVRLFTGHKGDVMAMAFS 140

Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
           P G YLA+ GT   D ++ LW I+ G  ++ +S H SPV SI+FSPCG  +ASGG +  +
Sbjct: 141 PNGNYLATAGT---DNSIYLWDISTGKLIQEYSGHTSPVYSISFSPCGTQIASGGFENCI 197

Query: 203 LTHELTTGRVISRF 216
              ++  G +  RF
Sbjct: 198 KIWDV-NGPIHGRF 210

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|291242055|ref|XP_002740924.1| PREDICTED: PCAF associated factor 65 beta-like [Saccoglossus kowalevskii]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 96/156 (61%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH+  +W ++  S G    T S+D TARLW+L++ YPLRIF GH  DV C RFHP   YI
Sbjct: 392 GHNYPIWDMDTGSVGPYFATASQDHTARLWTLDRNYPLRIFAGHLMDVDCVRFHPNCNYI 451

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS D+ VRLWS+ DG  VR+F+ H   V S+AFSP GK+LAS G    D+ V+LW + 
Sbjct: 452 ATGSSDRTVRLWSVQDGKCVRLFTGHKGTVFSLAFSPNGKFLASSGE---DRKVKLWDLG 508

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G  V+  S H   V S+ FS     LASGG D  +
Sbjct: 509 SGNMVKELSGHQDNVYSLNFSNDSTMLASGGLDNTI 544

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|313672810|ref|YP_004050921.1| wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672] gi|312939566|gb|ADR18758.1| WD40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH  +V SV     G   ++G RD T +LW +     +R F GH  DVT     P   YI
Sbjct: 35  GHTSSVTSVAISPDGRYIVSGGRDNTVKLWDITTGREIRTFKGHTNDVTSVAISPDGRYI 94

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            +GSYDK V+LW IT G  +R F  H + V S+A SP G+Y+ S   GS D  +RLW IT
Sbjct: 95  VSGSYDKTVKLWDITTGREIRTFKGHTNDVTSVAISPDGRYIVS---GSEDNTIRLWDIT 151

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS 226
            G  +R F  H  PV S+A SP G+Y+ SGG D  V   ++TTGR I  F    ++ VTS
Sbjct: 152 TGRKIRKFRGHTLPVSSVAISPDGRYIVSGGRDNTVKLWDITTGREIRTFKGHTND-VTS 210

Query: 227 LVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
           +  S  G  +++GS   TV+ +   +  +I
Sbjct: 211 VAISPDGMYILSGSFDDTVKLWDITTGREI 240

Source: Calditerrivibrio nitroreducens DSM 19672

Species: Calditerrivibrio nitroreducens

Genus: Calditerrivibrio

Family: Deferribacteraceae

Order: Deferribacterales

Class: Deferribacteres

Phylum: Deferribacteres

Superkingdom: Bacteria

>gi|348575391|ref|XP_003473473.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like [Cavia porcellus]

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 94/161 (58%), Gaps = 4/161 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW ++     L   +GS D TARLWS ++ YPLRI+ GH  DV C RFHP   Y+
Sbjct: 382 GHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVRFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
            G   +    H   + S+AFSP    +AS   D  V   +L
Sbjct: 499 SGTLFKELRGHTDSITSLAFSPDSGLVASASMDNSVRVWDL 539

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390336476|ref|XP_003724354.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like [Strongylocentrotus purpuratus]

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 97/164 (59%), Gaps = 4/164 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   +W ++    G+   T S+D TARLWS E+ YP+R+  GH  DV C +FHP   YI
Sbjct: 291 GHKYPIWDLDVSLFGVYFCTASKDQTARLWSPERTYPVRVLSGHLMDVDCVKFHPNCKYI 350

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK +RLW IT G SVR+ + H S VL IAF+P GKYLAS G    D+ VR+W + 
Sbjct: 351 ATGSNDKTIRLWDITQGKSVRLLTGHKSSVLCIAFAPNGKYLASAGE---DRRVRVWDLA 407

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG 210
            G  ++    H   V S+AF+P    LASGG D  +   ++  G
Sbjct: 408 TGGLMKELRGHTDTVYSLAFNPDSSMLASGGADCTIRLWDIRQG 451

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|194042629|ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa [Sus scrofa]

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 91/156 (58%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct: 382 GHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G   +    H   + S+ FSP    +AS   D  V
Sbjct: 499 SGTLFKELRGHTDNITSLTFSPDSSLIASASMDNSV 534

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|169642580|gb|AAI60901.1| Taf5l protein [Rattus norvegicus]

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct: 382 GHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS++FSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G   +    H   + S+AFSP    +AS   D  V
Sbjct: 499 SGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSV 534

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|19527184|ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L [Mus musculus] gi|46577528|sp|Q91WQ5.1|TAF5L_MOUSE RecName: Full=TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L; AltName: Full=PCAF-associated factor 65 beta; Short=PAF65-beta gi|15488839|gb|AAH13550.1| TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Mus musculus] gi|26329141|dbj|BAC28309.1| unnamed protein product [Mus musculus] gi|148679816|gb|EDL11763.1| mCG130952 [Mus musculus]

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 92/156 (58%), Gaps = 4/156 (2%)

Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct: 382 GHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            TGS DK VRLWS   G SVR+F+ H  PVLS++FSP GKYLAS G    D+ ++LW + 
Sbjct: 442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE---DQRLKLWDLA 498

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G   +    H   + S+AFSP    +AS   D  V
Sbjct: 499 SGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSV 534

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395531622|ref|XP_003767874.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L [Sarcophilus harrisii]

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 93/157 (59%), Gaps = 6/157 (3%)

Query: 48  GHDMTVWSVE--ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           GH   VW ++   CS   A +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y
Sbjct: 381 GHAYPVWDLDISPCSLYFA-SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 439

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           + TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW +
Sbjct: 440 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDL 496

Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
             G   +    H   + S+ FSP    +AS   D  V
Sbjct: 497 ASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSV 533

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440790261|gb|ELR11544.1| WD domain G-beta repeat-containing protein [Acanthamoeba castellanii str. Neff]

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
           NL++R       GH+  VW VE    G    T S D TARLWS + +YPLRIF GH  DV
Sbjct: 464 NLETRTNLVCYRGHNYPVWDVEFSPLGYYFATASHDRTARLWSTDHIYPLRIFAGHLSDV 523

Query: 95  TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG 154
            C +FHP   Y+ TGS DK++RLW +  G  VR+F+ H  PV ++AFSP G+ LAS G  
Sbjct: 524 DCVKFHPNCNYVATGSSDKSIRLWEMNSGNCVRIFTGHFGPVYALAFSPDGRLLASAGE- 582

Query: 155 SYDKAVRLWSITDGASVRVFSDHVSPVL-SIAFSPCGKYLASGGEDGLV 202
             DK V +W +  G  V+V S H    + S+ FS  G  LASG  D  V
Sbjct: 583 --DKTVMIWDLGTGKRVKVLSGHHEKTIWSLDFSAEGTLLASGSADNTV 629

Source: Acanthamoeba castellanii str. Neff

Species: Acanthamoeba castellanii

Genus: Acanthamoeba

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
UNIPROTKB|F1RG42	589	TAF5L "Uncharacterized protein	0.433	0.258	0.467	1e-36
MGI|MGI:1919039	589	Taf5l "TAF5-like RNA polymeras	0.433	0.258	0.467	1.1e-36
UNIPROTKB|E2RR78	607	TAF5L "Uncharacterized protein	0.433	0.250	0.461	3.3e-36
UNIPROTKB|O75529	589	TAF5L "TAF5-like RNA polymeras	0.433	0.258	0.461	4e-36
UNIPROTKB|E1C8E9	560	TAF5L "Uncharacterized protein	0.430	0.269	0.458	6.3e-36
UNIPROTKB|F1N575	585	TAF5L "Uncharacterized protein	0.433	0.259	0.455	1.4e-35
ZFIN|ZDB-GENE-030131-5987	601	taf5l "TAF5-like RNA polymeras	0.430	0.251	0.464	1.4e-32
UNIPROTKB|E1BHK9	586	E1BHK9 "Uncharacterized protei	0.433	0.259	0.416	1.4e-31
DICTYBASE|DDB_G0287337	948	taf5 "TFIID subunit" [Dictyost	0.481	0.178	0.426	4.8e-30
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.433	0.201	0.435	1.1e-30

UNIPROTKB|F1RG42 TAF5L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 369 (135.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 73/156 (46%), Positives = 91/156 (58%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct:   382 GHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct:   442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 498

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+ FSP    +AS   D  V
Sbjct:   499 SGTLFKELRGHTDNITSLTFSPDSSLIASASMDNSV 534

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1919039 Taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Mus musculus (taxid:10090)]

 Score = 368 (134.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 73/156 (46%), Positives = 92/156 (58%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW V+     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct:   382 GHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PVLS++FSP GKYLAS G    D+ ++LW + 
Sbjct:   442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGE---DQRLKLWDLA 498

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+AFSP    +AS   D  V
Sbjct:   499 SGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSV 534

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030914 "STAGA complex" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

UNIPROTKB|E2RR78 TAF5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
 Identities = 72/156 (46%), Positives = 91/156 (58%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW ++     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct:   400 GHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 459

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct:   460 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 516

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+ FSP    +AS   D  V
Sbjct:   517 SGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSV 552

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O75529 TAF5L "TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
 Identities = 72/156 (46%), Positives = 91/156 (58%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW ++     L   +GS D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct:   382 GHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 441

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct:   442 ATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 498

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+ FSP    +AS   D  V
Sbjct:   499 SGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSV 534

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0030914 "STAGA complex" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

UNIPROTKB|E1C8E9 TAF5L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
 Identities = 72/157 (45%), Positives = 92/157 (58%)

Query:    48 GHDMTVWSVEA--CSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
             GH   VW ++   CS   A + S D TARLWS ++ YPLRI+ GH  DV C +FHP   Y
Sbjct:   382 GHAYPVWDLDISPCSLYFA-SASHDRTARLWSFDRTYPLRIYAGHLLDVDCVKFHPNSNY 440

Query:   106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
             + TGS DK VRLWS   G SVR+F+ H  PVL++AFSP GKYLAS G    D+ ++LW +
Sbjct:   441 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNGKYLASAGE---DQRLKLWDL 497

Query:   166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
               G   +    H   + S+ FSP    +AS   D  V
Sbjct:   498 ASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSV 534

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

UNIPROTKB|F1N575 TAF5L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
 Identities = 71/156 (45%), Positives = 90/156 (57%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW ++     L   + S D TARLWS ++ YPLRI+ GH  DV C +FHP   Y+
Sbjct:   378 GHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYL 437

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PVLS+AFSP GKYLAS G    D+ ++LW + 
Sbjct:   438 ATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGE---DQRLKLWDLA 494

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+ FSP    +AS   D  V
Sbjct:   495 SGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSV 530

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-5987 taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Danio rerio (taxid:7955)]

 Score = 361 (132.1 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 73/157 (46%), Positives = 92/157 (58%)

Query:    48 GHDMTVWSVEA--CSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
             GH   VW V+   CS   + T S D TARLWS  + YPLR++ GH  DV C +FHP   Y
Sbjct:   394 GHAYPVWDVDVSPCSLYFS-TASHDRTARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNY 452

Query:   106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
             I TGS DK VRLWS   GASVR+F+ H  PVL++AFSP GKYLAS G    D+ ++LW +
Sbjct:   453 IATGSTDKTVRLWSTRQGASVRLFTGHRGPVLTLAFSPNGKYLASAGE---DQRLKLWDL 509

Query:   166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
               G   +    H   + S++FS     +AS   D  V
Sbjct:   510 ASGGLFKDLRGHTDTISSLSFSQDSSLVASASMDNTV 546

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1BHK9 E1BHK9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 65/156 (41%), Positives = 85/156 (54%)

Query:    48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH   VW ++     L   + S D TARLWS ++ YPLRI+ GH   V C +FHP   Y+
Sbjct:   379 GHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYL 438

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS DK VRLWS   G SVR+F+ H  PV  +AFSP G+YL S G    D+ ++LW + 
Sbjct:   439 ATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGE---DQLLKLWDLA 495

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G   +    H   + S+ FS     +AS   D  V
Sbjct:   496 SGTLYKDLHGHTDDITSVTFSLDSSVIASASMDNSV 531

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

DICTYBASE|DDB_G0287337 taf5 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 343 (125.8 bits), Expect = 4.8e-30, P = 4.8e-30
 Identities = 75/176 (42%), Positives = 95/176 (53%)

Query:    25 EDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYP 83
             ED  A L S + + +  L  Y  GH+  VW V     G    T S D TARLW+   + P
Sbjct:   699 EDTTARLWSMETMSN--LVCY-KGHNFPVWDVSFSPFGFYFATASHDRTARLWTTNHISP 755

Query:    84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
             LRIF GH  D    RFHP I Y+ TGS DK+ RLW I  G  VR+F  H +P+ ++AFSP
Sbjct:   756 LRIFTGHLSDCNTVRFHPNINYLATGSNDKSARLWEIQTGKCVRIFMGHRAPIYTVAFSP 815

Query:   144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
              G+ LA+ G    D +V LW ++ G  V+    H   V S+ FS  G  LASG  D
Sbjct:   816 DGRLLATAGE---DTSVILWDLSTGKKVKKMDGHTKCVYSLDFSCDGSILASGSSD 868

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016568 "chromatin modification" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0005669 "transcription factor TFIID complex" evidence=ISS

GO:0000124 "SAGA complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 347 (127.2 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 68/156 (43%), Positives = 89/156 (57%)

Query:    48 GHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             GH+  VW  +    G   ++G  D  ARLW+ +   PLRIF GH  DVTC RFHP   Y+
Sbjct:   539 GHNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYV 598

Query:   107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              TGS D+ VRLW + +G  VR+F+ H  P+ S+AFSP GK+LASG T   D  V LW I 
Sbjct:   599 ATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGST---DGRVLLWDIG 655

Query:   167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
              G  +     H   + ++ FS  G+ +ASG  D  V
Sbjct:   656 HGLMIAELKGHTGTIYALKFSRDGEIIASGSIDNTV 691

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	351
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-14
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-07
smart00320	40	smart00320, WD40, WD40 repeats	7e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	0.001
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  156 bits (397), Expect = 2e-45
 Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 5/214 (2%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
           +L++  L     GH   V  V A + G    +GS D T RLW LE    +R   GH   V
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV 96

Query: 95  TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG 154
           +   F P    + + S DK +++W +  G  +     H   V S+AFSP G ++AS    
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS---S 153

Query: 155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVIS 214
           S D  ++LW +  G  V   + H   V S+AFSP G+ L S   DG +   +L+TG+ + 
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213

Query: 215 RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
                E   V S+ +S  G  L +GS  GT++ +
Sbjct: 214 TLRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (373), Expect = 5e-42
 Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   V  V     G L  TGS D T ++W LE    LR   GH   V         TY+
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            +GS DK +RLW +  G  VR  + H S V S+AFSP G+ L+S    S DK +++W + 
Sbjct: 67  ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS---SSRDKTIKVWDVE 123

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVT 225
            G  +     H   V S+AFSP G ++AS  +DG +   +L TG+ ++      H   V 
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVN 181

Query: 226 SLVWSVTGETLVTGSLTGTVQFY 248
           S+ +S  GE L++ S  GT++ +
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (373), Expect = 6e-42
 Identities = 73/216 (33%), Positives = 107/216 (49%), Gaps = 9/216 (4%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACS--KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQD 93
           +L++       +GH   V SV A S    +  + SRD T ++W +E    L    GH   
Sbjct: 79  DLETGECVRTLTGHTSYVSSV-AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137

Query: 94  VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT 153
           V    F P  T++ + S D  ++LW +  G  V   + H   V S+AFSP G+ L S  +
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI 213
              D  ++LW ++ G  +     H + V S+AFSP G  LASG EDG +   +L TG  +
Sbjct: 198 ---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254

Query: 214 SRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
               L  H   VTSL WS  G+ L +GS  GT++ +
Sbjct: 255 QT--LSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (321), Expect = 2e-34
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
             R   GH   VTC  F P    + TGS D  +++W +  G  +R    H  PV  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
             G YLAS   GS DK +RLW +  G  VR  + H S V S+AFSP G+ L+S   D  +
Sbjct: 61  ADGTYLAS---GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 203 LTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
              ++ TG+ ++    + H   V S+ +S  G  + + S  GT++ +
Sbjct: 118 KVWDVETGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  118 bits (295), Expect = 1e-29
 Identities = 85/217 (39%), Positives = 115/217 (52%), Gaps = 11/217 (5%)

Query: 47  SGHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT 104
            GH  +V S+     G  LA   S D T +LW L    PL    GH   V+   F P   
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211

Query: 105 -YIGTGSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
             I +GS D  +RLW ++ G  +R   S H   V+S +FSP G  LASG   S D  +RL
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASG---SSDGTIRL 267

Query: 163 WSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W + +  + +R  S H S VLS+AFSP GK LASG  DG V   +L TG+++S   L+ H
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 222 E-PVTSLVWSVTGETLVTG-SLTGTVQFYGWPSASKI 256
           E PV+SL +S  G  LV+G S  GT++ +   +   +
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (274), Expect = 7e-27
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 10/221 (4%)

Query: 35  KNLQSRYLPYYTSGHDMTVWSVEACSKG----LALTGSRDTTARLWSLEQMY-PLRIFVG 89
            +   + +      HD +V  +   S      L  + S D T +LW L      +R   G
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153

Query: 90  HKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL 148
           H + VT   F P    + +GS  D  ++LW +  G  +   + H  PV S+AFSP G  L
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213

Query: 149 ASGGTGSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
            +  +GS D  +RLW ++ G  +R   S H   V+S +FSP G  LASG  DG +   +L
Sbjct: 214 IA--SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDL 270

Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
            +   + R        V S+ +S  G+ L +GS  GTV+ +
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  107 bits (268), Expect = 4e-26
 Identities = 74/205 (36%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY-PLRIFVGHKQDVTCARFHPKITY 105
           SGH  +V S  +    L  +GS D T RLW L      LR   GH   V    F P    
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
           + +GS D  VRLW +  G  +   +   H  PV S++FSP G  L SGG  S D  +RLW
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG--SDDGTIRLW 356

Query: 164 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP 223
            +  G  ++    H S VLS++FSP G+ ++SG  DG V   +L+TG ++          
Sbjct: 357 DLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD-GHTSR 414

Query: 224 VTSLVWSVTGETLVTGSLTGTVQFY 248
           VTSL +S  G++L +GS   T++ +
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  100 bits (248), Expect = 2e-23
 Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 11/209 (5%)

Query: 48  GHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQMYP-LRIFVG-HKQDVTCARFHP--- 101
           GH+ ++ S+  +    L L+GS D T +LW L+     ++   G H   V+         
Sbjct: 63  GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122

Query: 102 KITYIGTGSYDKAVRLWSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV 160
               + + S D  V+LW + T G  +R    H   V S+AFSP GK LASG   S D  +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS--SLDGTI 180

Query: 161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASGGEDGLVLTHELTTGRVISRFHLQ 219
           +LW +  G  +   + H  PV S+AFSP G   +ASG  DG +   +L+TG+++ R  L 
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL-RSTLS 239

Query: 220 EHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
            H       +S  G  L +GS  GT++ +
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 90.5 bits (225), Expect = 8e-21
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 6/129 (4%)

Query: 125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 184
             R    H   V  +AFSP GK LA   TGS D  +++W +  G  +R    H  PV  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLA---TGSGDGTIKVWDLETGELLRTLKGHTGPVRDV 57

Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTG 243
           A S  G YLASG  D  +   +L TG  +       H   V+S+ +S  G  L + S   
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGRILSSSSRDK 115

Query: 244 TVQFYGWPS 252
           T++ +   +
Sbjct: 116 TIKVWDVET 124

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 47  SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           +GH   V SV     G  L + S D T +LW L     L    GH+  V    F P    
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
           + +GS D  +R+W +  G  V+  S H + V S+A+SP GK LAS   GS D  +R+W 
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS---GSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.8 bits (177), Expect = 4e-14
 Identities = 59/157 (37%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 48  GHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           GH+  V S+     G  L   GS D T RLW L    PL+   GH   V    F P    
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRV 384

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           + +GS D  VRLW ++ G+ +R    H S V S+ FSP GK LAS   GS D  +RLW +
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLAS---GSSDNTIRLWDL 441

Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
                        + + S++FSP GK LAS   D  V
Sbjct: 442 K------------TSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
           G  +R    H  PV S+AFSP G  LAS   GS D  VR+W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLAS---GSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
            G  ++    H  PV S+AFSP GKYLAS   GS D  ++LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLAS---GSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
            LR   GH   VT   F P    + +GS D  VR+W 
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
           G  +R    H  PV S+AFSP G  LASG +DG V
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTV 35

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
            L+   GH   VT   F P   Y+ +GS D  ++LW 
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            G  ++    H  PV S+AFSP GKYLASG +DG +
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 24/163 (14%)

Query: 99  FHPKITYIGTGSYDKAVRLW-SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD 157
           F  +I Y+      +   L  +  DGA+ +  +    P+LS A+SP G+ LA     S  
Sbjct: 154 FSTRIAYVSKSGKGRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGK 213

Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-----SGGEDGLVL------THE 206
             + +  +  G      +       + AFSP G  LA      G  D  V+         
Sbjct: 214 PEIYVQDLATGQ-REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR 272

Query: 207 LTTGRVISRFHLQEHEPVTSLVWSVTGETLV-TGSLTGTVQFY 248
           LT G  I           T   WS  G+++  T    G+ Q Y
Sbjct: 273 LTNGPGID----------TEPSWSPDGKSIAFTSDRGGSPQIY 305

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)

Query: 114 AVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSIT-DGASV 171
           A+RL +      V     H S +L + F+PC  + LAS   GS D  +R+W I  +  SV
Sbjct: 55  AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS---GSEDLTIRVWEIPHNDESV 111

Query: 172 RVFSD-------HVSPVLSIAFSPCGKY-LASGGEDGLVLTHELTTGRVISRFHLQEHEP 223
           +   D       H   +  I ++P   Y + S G D  V   ++   +    F +   + 
Sbjct: 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQINMPKK 169

Query: 224 VTSLVWSVTGETLVTGSLTG 243
           ++SL W++ G  L++G+  G
Sbjct: 170 LSSLKWNIKG-NLLSGTCVG 188

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0272|consensus	459		100.0
KOG0284|consensus	464		100.0
KOG0263|consensus	707		100.0
KOG0273|consensus	524		100.0
KOG0286|consensus	343		100.0
KOG0265|consensus	338		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0295|consensus	406		100.0
KOG0279|consensus	315		100.0
KOG0273|consensus	524		100.0
KOG0291|consensus	893		100.0
KOG0266|consensus	456		100.0
KOG0315|consensus	311		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318|consensus	603		100.0
KOG0645|consensus	312		100.0
KOG0263|consensus	707		100.0
KOG0318|consensus	603		100.0
KOG0315|consensus	311		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296|consensus	399		100.0
KOG0291|consensus	893		100.0
KOG0276|consensus	794		100.0
KOG1407|consensus	313		100.0
KOG0295|consensus	406		100.0
KOG0316|consensus	307		100.0
KOG0266|consensus	456		100.0
KOG0282|consensus	503		100.0
KOG0265|consensus	338		100.0
KOG0319|consensus	775		100.0
KOG0285|consensus	460		100.0
KOG0643|consensus	327		100.0
KOG0275|consensus	508		100.0
KOG0292|consensus	1202		100.0
KOG0283|consensus	712		100.0
KOG0293|consensus	519		100.0
KOG0645|consensus	312		100.0
KOG0278|consensus	334		100.0
KOG0310|consensus	487		100.0
KOG0281|consensus	499		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1446|consensus	311		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0282|consensus	503		100.0
KOG0319|consensus	775		100.0
KOG0973|consensus	942		100.0
KOG0277|consensus	311		100.0
KOG0296|consensus	399		100.0
KOG0305|consensus	484		100.0
KOG0288|consensus	459		100.0
KOG0316|consensus	307		100.0
KOG0306|consensus	888		100.0
KOG0289|consensus	506		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0281|consensus	499		100.0
KOG0647|consensus	347		100.0
KOG0299|consensus	479		100.0
KOG0772|consensus	641		100.0
KOG0306|consensus	888		100.0
KOG0278|consensus	334		100.0
KOG0293|consensus	519		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0310|consensus	487		100.0
KOG0305|consensus	484		100.0
KOG0643|consensus	327		100.0
KOG0268|consensus	433		100.0
KOG0277|consensus	311		100.0
KOG0292|consensus	1202		100.0
KOG0640|consensus	430		100.0
KOG0641|consensus	350		100.0
KOG0276|consensus	794		100.0
KOG0313|consensus	423		100.0
KOG0274|consensus	537		99.98
KOG1036|consensus	323		99.98
KOG0283|consensus	712		99.98
KOG0313|consensus	423		99.98
KOG0294|consensus	362		99.97
KOG0274|consensus	537		99.97
KOG0308|consensus	735		99.97
KOG0973|consensus	942		99.97
KOG0275|consensus	508		99.97
KOG0264|consensus	422		99.97
KOG0641|consensus	350		99.97
KOG1407|consensus	313		99.97
KOG1446|consensus	311		99.97
KOG1274|consensus	933		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG2096|consensus	420		99.97
KOG0289|consensus	506		99.97
KOG1332|consensus	299		99.97
KOG0288|consensus	459		99.97
KOG0640|consensus	430		99.97
KOG0639|consensus	705		99.97
KOG0300|consensus	481		99.97
KOG2055|consensus	514		99.97
KOG0772|consensus	641		99.96
KOG0301|consensus	745		99.96
KOG0294|consensus	362		99.96
KOG2106|consensus	626		99.96
KOG0267|consensus	825		99.96
KOG0299|consensus	479		99.96
KOG0639|consensus	705		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG4283|consensus	397		99.95
KOG0267|consensus	825		99.95
KOG1408|consensus	1080		99.95
KOG2055|consensus	514		99.95
KOG2106|consensus	626		99.95
KOG1539|consensus	910		99.95
KOG2048|consensus	691		99.95
KOG2445|consensus	361		99.95
KOG0269|consensus	839		99.95
KOG0646|consensus	476		99.95
KOG0264|consensus	422		99.95
KOG0300|consensus	481		99.95
KOG0269|consensus	839		99.95
KOG4328|consensus	498		99.95
KOG1539|consensus	910		99.95
KOG0268|consensus	433		99.95
KOG1332|consensus	299		99.95
KOG0308|consensus	735		99.95
KOG0646|consensus	476		99.95
KOG1408|consensus	1080		99.95
KOG1273|consensus	405		99.94
KOG0301|consensus	745		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0647|consensus	347		99.94
KOG0302|consensus	440		99.94
KOG2096|consensus	420		99.94
KOG0270|consensus	463		99.94
KOG1273|consensus	405		99.94
KOG1063|consensus	764		99.93
KOG0321|consensus	720		99.93
KOG1036|consensus	323		99.93
KOG0650|consensus	733		99.93
KOG1063|consensus	764		99.93
KOG1274|consensus	933		99.93
KOG4283|consensus	397		99.93
KOG2919|consensus	406		99.93
KOG1034|consensus	385		99.93
KOG1009|consensus	434		99.92
KOG0302|consensus	440		99.92
KOG1445|consensus	1012		99.91
KOG0307|consensus	1049		99.91
KOG0270|consensus	463		99.91
KOG4378|consensus	673		99.91
KOG2048|consensus	691		99.91
KOG4378|consensus	673		99.9
KOG0321|consensus	720		99.9
KOG1034|consensus	385		99.9
KOG2445|consensus	361		99.9
KOG4328|consensus	498		99.9
KOG1007|consensus	370		99.89
KOG0303|consensus	472		99.89
KOG0290|consensus	364		99.89
KOG0307|consensus	1049		99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0303|consensus	472		99.88
KOG2110|consensus	391		99.88
KOG1524|consensus	737		99.88
KOG1538|consensus	1081		99.88
KOG0642|consensus	577		99.88
KOG2919|consensus	406		99.87
KOG0322|consensus	323		99.87
KOG0650|consensus	733		99.87
KOG0649|consensus	325		99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG0290|consensus	364		99.86
KOG1009|consensus	434		99.86
KOG4227|consensus	609		99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1963|consensus	792		99.85
KOG1188|consensus	376		99.85
KOG0644|consensus	1113		99.84
KOG0322|consensus	323		99.84
KOG0771|consensus	398		99.84
KOG1587|consensus	555		99.83
KOG1524|consensus	737		99.83
KOG1517|consensus	1387		99.83
KOG0771|consensus	398		99.83
KOG2111|consensus	346		99.83
KOG1538|consensus	1081		99.83
KOG1007|consensus	370		99.83
KOG1445|consensus	1012		99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0649|consensus	325		99.81
KOG1272|consensus	545		99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG1523|consensus	361		99.81
KOG2110|consensus	391		99.8
KOG1587|consensus	555		99.8
KOG1188|consensus	376		99.8
KOG2139|consensus	445		99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG1523|consensus	361		99.79
KOG0644|consensus	1113		99.78
KOG4497|consensus	447		99.78
KOG0642|consensus	577		99.78
KOG1963|consensus	792		99.78
KOG1517|consensus	1387		99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.77
KOG2139|consensus	445		99.77
PRK04922	433	tolB translocation protein TolB; Provisional	99.76
KOG2394|consensus	636		99.76
KOG3881|consensus	412		99.76
KOG1310|consensus	758		99.76
PRK03629	429	tolB translocation protein TolB; Provisional	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.75
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.74
KOG2394|consensus	636		99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
KOG1334|consensus	559		99.74
KOG4227|consensus	609		99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG1310|consensus	758		99.73
KOG1240|consensus	1431		99.73
KOG2321|consensus	703		99.72
KOG3881|consensus	412		99.72
KOG1272|consensus	545		99.72
PRK01029	428	tolB translocation protein TolB; Provisional	99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.69
KOG4497|consensus	447		99.69
KOG2321|consensus	703		99.69
KOG1240|consensus	1431		99.69
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
KOG1354|consensus	433		99.68
KOG2111|consensus	346		99.68
KOG2315|consensus	566		99.68
KOG2314|consensus	698		99.66
PRK00178	430	tolB translocation protein TolB; Provisional	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.65
PRK04792	448	tolB translocation protein TolB; Provisional	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.59
KOG0974|consensus	967		99.59
KOG1334|consensus	559		99.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.57
KOG4547|consensus	541		99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.55
PRK04043	419	tolB translocation protein TolB; Provisional	99.53
KOG0280|consensus	339		99.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.51
KOG2041|consensus	1189		99.51
KOG2314|consensus	698		99.5
KOG1354|consensus	433		99.49
KOG4547|consensus	541		99.49
KOG2315|consensus	566		99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.48
KOG1064|consensus	2439		99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
KOG1409|consensus	404		99.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
COG4946	668	Uncharacterized protein related to the periplasmic	99.44
KOG1064|consensus	2439		99.44
KOG0974|consensus	967		99.43
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
KOG4532|consensus	344		99.41
PRK04043	419	tolB translocation protein TolB; Provisional	99.4
KOG4190|consensus	1034		99.4
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.38
KOG1409|consensus	404		99.38
KOG2041|consensus	1189		99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG3914|consensus	390		99.27
KOG0280|consensus	339		99.26
KOG4714|consensus	319		99.26
KOG4190|consensus	1034		99.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.23
KOG4532|consensus	344		99.22
KOG1912|consensus	1062		99.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.18
KOG0309|consensus	1081		99.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.17
KOG4714|consensus	319		99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.16
KOG0309|consensus	1081		99.15
KOG1275|consensus	1118		99.13
KOG1920|consensus	1265		99.13
KOG3914|consensus	390		99.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.12
KOG1912|consensus	1062		99.11
KOG1832|consensus	1516		99.11
KOG0882|consensus	558		99.09
KOG0882|consensus	558		99.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
KOG2695|consensus	425		99.07
KOG2695|consensus	425		99.06
KOG3621|consensus	726		98.98
KOG2114|consensus	933		98.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.9
KOG1832|consensus	1516		98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
KOG3617|consensus	1416		98.82
PRK02888	635	nitrous-oxide reductase; Validated	98.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.8
KOG1275|consensus	1118		98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.75
KOG2066|consensus	846		98.74
KOG1920|consensus	1265		98.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.72
KOG2066|consensus	846		98.72
KOG1645|consensus	463		98.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.64
COG3391	381	Uncharacterized conserved protein [Function unknow	98.63
KOG1008|consensus	783		98.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.6
KOG4649|consensus	354		98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.58
KOG2114|consensus	933		98.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.57
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.54
COG3391	381	Uncharacterized conserved protein [Function unknow	98.52
KOG1645|consensus	463		98.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.5
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.48
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.42
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.36
KOG1008|consensus	783		98.35
KOG3617|consensus	1416		98.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.18
KOG4649|consensus	354		98.18
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.14
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
KOG4640|consensus	665		98.1
PRK13616	591	lipoprotein LpqB; Provisional	98.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.02
KOG3621|consensus	726		98.02
KOG4640|consensus	665		97.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.92
PRK13616	591	lipoprotein LpqB; Provisional	97.9
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.76
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.71
KOG4441|consensus	571		97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.66
KOG2079|consensus	1206		97.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.65
PHA02713	557	hypothetical protein; Provisional	97.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.54
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.52
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.5
PRK10115	686	protease 2; Provisional	97.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.46
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.44
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.38
KOG2395|consensus	644		97.34
KOG2079|consensus	1206		97.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.28
PHA02713	557	hypothetical protein; Provisional	97.27
KOG2444|consensus	238		97.27
KOG2280|consensus	829		97.22
KOG2395|consensus	644		97.19
KOG4499|consensus	310		97.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.17
KOG2444|consensus	238		97.16
PHA03098	534	kelch-like protein; Provisional	97.15
PRK10115	686	protease 2; Provisional	97.14
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.13
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.07
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.86
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.83
KOG4441|consensus	571		96.77
PHA02790	480	Kelch-like protein; Provisional	96.75
KOG4499|consensus	310		96.71
PHA03098	534	kelch-like protein; Provisional	96.67
KOG3630|consensus	1405		96.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.54
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.4
PRK13684	334	Ycf48-like protein; Provisional	96.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.29
KOG3630|consensus	1405		96.27
KOG2247|consensus	615		96.13
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.05
COG5167	776	VID27 Protein involved in vacuole import and degra	95.96
KOG1897|consensus	1096		95.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.86
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.69
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.69
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.67
KOG1916|consensus	1283		95.66
COG4590	733	ABC-type uncharacterized transport system, permeas	95.63
PHA02790	480	Kelch-like protein; Provisional	95.53
PRK13684	334	Ycf48-like protein; Provisional	95.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.38
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.24
KOG2377|consensus	657		95.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.76
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.72
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.64
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.63
COG5167	776	VID27 Protein involved in vacuole import and degra	94.59
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.56
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.48
KOG2377|consensus	657		94.47
KOG1897|consensus	1096		94.4
KOG1916|consensus	1283		94.38
KOG2247|consensus	615		94.37
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.34
KOG1983|consensus	993		94.12
COG5276	370	Uncharacterized conserved protein [Function unknow	94.0
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.98
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	93.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.53
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.51
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.42
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.34
KOG1898|consensus	1205		93.34
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.33
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.15
KOG1900|consensus	1311		93.1
KOG1900|consensus	1311		92.9
KOG2280|consensus	829		92.54
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.48
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.45
KOG4460|consensus	741		92.13
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.09
KOG1898|consensus	1205		91.91
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.56
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.49
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.38
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.86
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.57
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.51
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.43
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.08
COG4590	733	ABC-type uncharacterized transport system, permeas	90.07
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.7
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.34
KOG2063|consensus	877		89.33
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.31
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.24
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.78
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.33
PLN02153	341	epithiospecifier protein	87.94
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.86
PLN02153	341	epithiospecifier protein	87.84
KOG4460|consensus	741		87.8
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.23
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.71
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.43
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.99
PLN02193	470	nitrile-specifier protein	85.6
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.76
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	84.13
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.19
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.1

>KOG0271|consensus

Probab=100.00  E-value=1.5e-49  Score=317.81  Aligned_cols=311  Identities=21%  Similarity=0.294  Sum_probs=265.6

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      .-..||.++|.+++|+|+  |..||+|+.|.++++||+.+.     ..+|...|.|++|+|||+. ++|+.||+|++||.
T Consensus       109 sS~~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             cccCCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            345789999999999999  999999999999999999988     7899999999999999988 99999999999999


Q ss_pred             CCCeee-EEeeCCCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           79 EQMYPL-RIFVGHKQDVTCARFHP-----KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        79 ~~~~~~-~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      ++++++ +.+.+|...|++++|.|     ..++|++++.||.++|||+..+.++..+.+|..+|+|+.|--+ .++++++
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS  265 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS  265 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence            988765 67899999999999977     5679999999999999999999999999999999999999643 5888988


Q ss_pred             cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEEC-----------CCC-------------------------cEEEEE
Q psy519          153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS-----------PCG-------------------------KYLASG  196 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~~-------------------------~~l~~~  196 (351)
                      .   |++|++|+...|...+.+++|...|+.++.+           |.+                         ..|++|
T Consensus       266 ~---DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  266 Q---DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             C---CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            8   9999999999999999999999999998876           223                         359999


Q ss_pred             cCCCeEEEEEcCCCc-EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCC
Q psy519          197 GEDGLVLTHELTTGR-VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVG  270 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~  270 (351)
                      +.|..+.+|+....+ ++.+. ..|...|+.+.||||++++|+++-|..|++|+-.+|+.+..     ..+..++|+.|.
T Consensus       343 sDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             cCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence            999999999976544 44444 36778899999999999999999999999999999998754     678899999999


Q ss_pred             ceeeeeeccceeeEEEe-----eeceeCceEEEeeEEEEecCCceeeccEEEecCCcccc
Q psy519          271 FEAATLAANSRVRTLRE-----MHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKEC  325 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  325 (351)
                      +.++.++.|.++++|++     ....-||...+.+  ++++|||...... ..+..++.|
T Consensus       422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~--vDwspDG~rV~sg-gkdkv~~lw  478 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA--VDWSPDGQRVASG-GKDKVLRLW  478 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE--EEecCCCceeecC-CCceEEEee
Confidence            99998888875554442     1224466666666  8899999876433 233334443

>KOG0272|consensus

Probab=100.00  E-value=3.4e-49  Score=319.28  Aligned_cols=280  Identities=28%  Similarity=0.403  Sum_probs=261.1

Q ss_pred             CCCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC---cEEEEeCCCc
Q psy519            1 MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG---LALTGSRDTT   72 (351)
Q Consensus         1 ~~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~---~~~~~~~d~~   72 (351)
                      |++...+.|.+.+|..+.||++  ++.||+|+-+|.+++|+.+..     +.+|...|.++.|+|..   .+++|+.||+
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt  242 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT  242 (459)
T ss_pred             hhhhhhhccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence            4566778899999999999999  999999999999999999887     88999999999999983   4499999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      +++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|||.++++|+
T Consensus       243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence            99999999899999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-
Q psy519          153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-  231 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-  231 (351)
                      .   |..-+|||+|+++++..+.+|..+|..+.|+|+|..||+|+.|++++|||++..+.+..+. .|..-|+.+.|+| 
T Consensus       323 l---D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  323 L---DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQ  398 (459)
T ss_pred             c---cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEeccc
Confidence            9   9999999999999999999999999999999999999999999999999999988888775 6778999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      .|.+|++++.|+++++|..++.++++.     ..+.++.++|++..+++.+.|   +++++|.
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D---RT~KLW~  458 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD---RTIKLWR  458 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC---ceeeecc
Confidence            788999999999999999999988864     778899999999998887666   4777774

>KOG0271|consensus

Probab=100.00  E-value=1.6e-46  Score=300.42  Aligned_cols=275  Identities=23%  Similarity=0.329  Sum_probs=247.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCC-----C-cEEEEeCCCc
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSK-----G-LALTGSRDTT   72 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~-----~-~~~~~~~d~~   72 (351)
                      +..++|..-|.|++||||  |+.||+|+.||+|++||..++      +.+|...|++++|.|-     . .+++++.||.
T Consensus       151 ~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             eeecCCccEEEEEEECCC--cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            557899999999999999  999999999999999998777      8899999999999863     3 4499999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc----------
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS----------  142 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~----------  142 (351)
                      ++|||+..++++..+.+|..+|+|++|--+ .+|++|+.|++|++|+...|...+.+++|...|..++.+          
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            999999999999999999999999999765 489999999999999999999999999999999999887          


Q ss_pred             -cCC-------------------------CEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEE
Q psy519          143 -PCG-------------------------KYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       143 -~~~-------------------------~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~  195 (351)
                       |.+                         +.+++|+.   |.++.+|+-... +++..+.+|...|..+.|+||++++|+
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD---d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD---DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC---CceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence             223                         34999988   999999997554 577788899999999999999999999


Q ss_pred             EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCC
Q psy519          196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVG  270 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~  270 (351)
                      ++-|..|++||.++|+.+..|. .|-..|..++|+.|.++|++|+.|.++++|++++.+....     ..+..+.|+|||
T Consensus       385 aSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG  463 (480)
T KOG0271|consen  385 ASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG  463 (480)
T ss_pred             eecccceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence            9999999999999999999986 5778999999999999999999999999999999877644     567889999999


Q ss_pred             ceeeeeeccceeeEEEeee
Q psy519          271 FEAATLAANSRVRTLREMH  289 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~  289 (351)
                      ...+.+   +.++++++|.
T Consensus       464 ~rV~sg---gkdkv~~lw~  479 (480)
T KOG0271|consen  464 QRVASG---GKDKVLRLWR  479 (480)
T ss_pred             ceeecC---CCceEEEeec
Confidence            987655   5556788874

>KOG0286|consensus

Probab=100.00  E-value=1.5e-44  Score=279.62  Aligned_cols=276  Identities=23%  Similarity=0.355  Sum_probs=250.9

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ...++++||...|.++.|++|  .++|++++.||.+.|||..+.     ..-....|..++|+|.|++ +.|+-|+...|
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~D--sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTD--SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeEEEecccccceeeeEecCC--cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            345778999999999999999  999999999999999999877     3445678999999999999 88999999999


Q ss_pred             EeCCCC------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEE
Q psy519           76 WSLEQM------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYL  148 (351)
Q Consensus        76 w~~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  148 (351)
                      |++.+.      +..+.+.+|.+.+.|..|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence            999854      345678899999999999875 5788999999999999999999999999999999999999 99999


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-CCEEEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSL  227 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~  227 (351)
                      ++|+-   |+..++||+|.+...+.|.+|+..|.+++|.|+|.-|++|+.|+..++||++..+.+..+..... .+|+++
T Consensus       203 vSg~c---D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  203 VSGGC---DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             Eeccc---ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            99999   99999999999999999999999999999999999999999999999999999999988853322 689999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceee
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      +||..|++|++|..|..+.+||.-.++....     .++..+..+|||.-+++++.|..++
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr  340 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR  340 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence            9999999999999999999999988887754     6788899999999999998887544

>KOG0279|consensus

Probab=100.00  E-value=5.2e-44  Score=274.93  Aligned_cols=277  Identities=25%  Similarity=0.336  Sum_probs=244.4

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCC
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDT   71 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~   71 (351)
                      +.....+|+..|++++..+. ..+.|++++.|..+.+|++...          +.+|+..|..+..+++|++ ++++.|+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            44567899999999999987 2578889999999999999776          7899999999999999999 9999999


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCeEEEEEccC--CCEE
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPVLSIAFSPC--GKYL  148 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~~l  148 (351)
                      ++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++............ .+.|.|+.|+|+  ..+|
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            9999999999999999999999999999999999999999999999998765544444333 789999999997  6789


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                      ++++.   |+.+++||+++.+....+.+|.+.++.++++|||.+.++|+.||.+.+||++.++.+..+  .+...|.+++
T Consensus       166 vs~s~---DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~  240 (315)
T KOG0279|consen  166 VSASW---DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLC  240 (315)
T ss_pred             EEccC---CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEE
Confidence            99888   999999999999999999999999999999999999999999999999999999998766  6778999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeee--------------eecceeEEecCCceeeeeeccceeeEEE
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASKIGI--------------GVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      |+|+.-.|+.+.. ..|+|||++++..+..              ....+++|+++|..|..+.+++.++.+.
T Consensus       241 fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  241 FSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9999887777654 4699999998776542              2345789999999999999988555444

>KOG0272|consensus

Probab=100.00  E-value=2.9e-45  Score=296.51  Aligned_cols=244  Identities=25%  Similarity=0.375  Sum_probs=232.1

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      +..+...||...|.++.|+|...+..||+++.||++++|++++.     +.+|...|..++|+|+|++ +|++.|.+-++
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            34567899999999999999733678999999999999999985     8899999999999999999 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ||+++++.+....+|...|.+++|+|||.++++|+.|..-++||+++++++..+.+|..+|.+++|+|+|..+|+|+.  
T Consensus       288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--  365 (459)
T KOG0272|consen  288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--  365 (459)
T ss_pred             cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC--
Confidence            999999998888999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                       |++++|||++..+.+..+.+|..-|+.++|+| .|.+|++++.|+++++|..++.++++.+. .|.+.|.++.+++++.
T Consensus       366 -Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  366 -DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQ  443 (459)
T ss_pred             -CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCc
Confidence             99999999999999999999999999999999 78899999999999999999999999885 7889999999999999


Q ss_pred             EEEEEeCCCeEEEEe
Q psy519          235 TLVTGSLTGTVQFYG  249 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~  249 (351)
                      ++++++.|.++++|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            999999999999995

>KOG0284|consensus

Probab=100.00  E-value=8.3e-43  Score=281.20  Aligned_cols=270  Identities=21%  Similarity=0.341  Sum_probs=242.9

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      +.+|..|.|.|+  |+.|++|+..|.+.+|+....     .+.|..+|.++.|+++|.+ ++|+.+|.|++|+..-.. +
T Consensus        96 kc~V~~v~WtPe--GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V  172 (464)
T KOG0284|consen   96 KCPVNVVRWTPE--GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V  172 (464)
T ss_pred             ccceeeEEEcCC--CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence            457889999999  999999999999999998666     7899999999999999999 999999999999987544 3


Q ss_pred             EEeeCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE
Q psy519           85 RIFVGH-KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        85 ~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~  163 (351)
                      ..++.| ...|++++|+|+...+++++.||+|+|||....+..+.+.+|.-.|.+++|+|...++++++.   |..|++|
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---DnlVKlW  249 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---DNLVKLW  249 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC---CceeEee
Confidence            444444 499999999999999999999999999999999988999999999999999999999999999   9999999


Q ss_pred             EccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-CCCEEEEEeCC
Q psy519          164 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-TGETLVTGSLT  242 (351)
Q Consensus       164 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  242 (351)
                      |.+++.++.++..|...|..+.|+|++++|++++.|..++++|+++.+.+..+. .|...+.++.|+| ...+|.+|+.|
T Consensus       250 DprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  250 DPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             cCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCC
Confidence            999999999999999999999999999999999999999999999888888775 6788999999999 56788999999


Q ss_pred             CeEEEEeCCCCceee------eeecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          243 GTVQFYGWPSASKIG------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       243 g~i~i~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      |.|..|.+...+++.      ...+.+++|+|.|..|++++.+.   .+++|..
T Consensus       329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~---t~rfw~r  379 (464)
T KOG0284|consen  329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR---TVRFWTR  379 (464)
T ss_pred             CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc---ceeeecc
Confidence            999999998555543      37788999999999998866655   6667654

>KOG0263|consensus

Probab=100.00  E-value=6.4e-42  Score=297.27  Aligned_cols=238  Identities=32%  Similarity=0.584  Sum_probs=227.3

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc------------------------------------cCCCccceE
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------------------------------TSGHDMTVW   54 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------------------------------~~~~~~~i~   54 (351)
                      ...+.|..||++  +.+||.|..|..|++|.+...                                    +.+|.++|.
T Consensus       378 ~~~v~ca~fSdd--ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSDD--SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             CCcceeEeecCC--cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            467899999999  999999999999999999841                                    679999999


Q ss_pred             EEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q psy519           55 SVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV  133 (351)
Q Consensus        55 ~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  133 (351)
                      ...|+|+.++ +++++|+++|+|.+.+...+..+++|..+|+.+.|+|.|-++|+++.|++.++|......+++.+.+|.
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence            9999999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       134 ~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      +.|.|+.|+|+.+++++|+.   |.++++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+
T Consensus       536 sDV~cv~FHPNs~Y~aTGSs---D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVATGSS---DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             cccceEEECCcccccccCCC---CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            99999999999999999998   999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      ..+. .|.+.|.++.|+.+|..||+|+.|.+|++||+....
T Consensus       613 ~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  613 KQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             hhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            8886 568999999999999999999999999999987643

>KOG0273|consensus

Probab=100.00  E-value=4e-40  Score=270.25  Aligned_cols=271  Identities=23%  Similarity=0.317  Sum_probs=250.9

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ....|++++|+.+  |.+||+|+.+|.+++|+....    +..|.++|.++.|+.+|.+ ++++.|+++.+||..+++..
T Consensus       234 ~nkdVT~L~Wn~~--G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  234 SNKDVTSLDWNND--GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             ccCCcceEEecCC--CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            3578999999999  999999999999999999888    7889999999999999998 99999999999999999999


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      +.+..|..+-..+.|-.+ ..+++.+.|+.|+++.+....++.++.+|.++|.++.|+|.|.+|++++.   |++++||.
T Consensus       312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd---D~TlkiWs  387 (524)
T KOG0273|consen  312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD---DGTLKIWS  387 (524)
T ss_pred             EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC---CCeeEeee
Confidence            999889888778899754 57888999999999999999999999999999999999999999999999   99999999


Q ss_pred             ccCCceeEEeccCCCCEEEEEECCCC---------cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCE
Q psy519          165 ITDGASVRVFSDHVSPVLSIAFSPCG---------KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       165 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  235 (351)
                      +........+..|...|..+.|+|.|         ..+++++.|+.|++||+..+.+++.+. .|..+|.+++|+|+|++
T Consensus       388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcE
Confidence            99988999999999999999999954         478999999999999999999999986 68899999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          236 LVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      +|+|+.||.|.+|+.++++..+.    ..+..+.|+.+|..+....+++.+.++.+
T Consensus       467 lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  467 LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999999999999999876    56678999999999999999988776654

>KOG0286|consensus

Probab=100.00  E-value=6e-39  Score=248.59  Aligned_cols=273  Identities=18%  Similarity=0.296  Sum_probs=242.7

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-  123 (351)
                      +++|.+.|.++.|++|.+. ++++.||.+.|||.-+...++.+.....-|...+|+|.|++++.|+.|....||++.+. 
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc
Confidence            8899999999999999988 99999999999999988888888888889999999999999999999999999999855 


Q ss_pred             -----ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEc
Q psy519          124 -----ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGG  197 (351)
Q Consensus       124 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  197 (351)
                           +..+.+.+|.+.+.|+.|-+ ...|++++.   |.++.+||+++++.+..|.+|.+.|.++.++| +++.+++|+
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG---D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG---DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcC-CCceEecCC---CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence                 34567889999999999987 557778777   99999999999999999999999999999999 999999999


Q ss_pred             CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCC
Q psy519          198 EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVG  270 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~  270 (351)
                      .|+..++||++.+...+.|. .|...|++++|.|+|.-+++|++|++.++||++..+.+..       ..+.+++||..|
T Consensus       207 cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG  285 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG  285 (343)
T ss_pred             cccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence            99999999999999999996 6889999999999999999999999999999999887764       677899999999


Q ss_pred             ceeeeeeccceeeEEEeee-----ceeCceEEEeeEEEEecCCceeeccEEEecCCccccc
Q psy519          271 FEAATLAANSRVRTLREMH-----EIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      +.+..+..+.+..+|....     .+.||...+.+  +..+|||.-+... .+|..+++|.
T Consensus       286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc--l~~s~DG~av~Tg-SWDs~lriW~  343 (343)
T KOG0286|consen  286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC--LGVSPDGMAVATG-SWDSTLRIWA  343 (343)
T ss_pred             cEEEeeecCCceeEeeccccceEEEeeccCCeeEE--EEECCCCcEEEec-chhHheeecC
Confidence            9999988877655544222     34567677777  7899999877655 6899998884

>KOG0265|consensus

Probab=100.00  E-value=5.7e-39  Score=249.56  Aligned_cols=273  Identities=19%  Similarity=0.315  Sum_probs=241.3

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .....+|++.|..+.|+|+  |.+||+|+.|..|.+|+....      ..+|+++|..+.|.+++.. ++++.|.+++.|
T Consensus        40 ~m~l~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhcCCCcceEEEEEECCC--CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3457889999999999999  999999999999999997665      8899999999999999988 999999999999


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      |+++|+.++.+++|..-++.+.-+.-| ..+.+++.|+++++||+++...++++. .+.+++++.|..++..+.+|+-  
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI--  194 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI--  194 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence            999999999999999999988854444 466788899999999999988888875 4678999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC----cEEEEeeccCC---CCEEEEE
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG----RVISRFHLQEH---EPVTSLV  228 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~---~~v~~~~  228 (351)
                       |+.|++||++.+.....+.+|..+|+.+..+|+|.++.+-+.|..+++||++.-    +++..+....+   ......+
T Consensus       195 -dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  195 -DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             -cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence             999999999999999999999999999999999999999999999999999843    34555542222   3567789


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceee-----eeecceeEEecCCceeeeeecccee
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASKIG-----IGVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      |+|++..+.+|+.|..+++||..+...+-     ...+..+.|+|....+..+.+|.++
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            99999999999999999999998865553     3778899999999999888888754

>KOG0284|consensus

Probab=100.00  E-value=3.5e-41  Score=271.87  Aligned_cols=245  Identities=21%  Similarity=0.367  Sum_probs=228.2

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC-cEEEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG-LALTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~v   75 (351)
                      |+..+...|..+|.++.||++  |.++++|+.+|.|++|+.+.+     ...|...|++++|+|+. ++++++.||+|+|
T Consensus       129 nFEtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki  206 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI  206 (464)
T ss_pred             eHHHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence            345567889999999999999  999999999999999998877     44556999999999976 5599999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ||....++.+.+.+|.-.|.+++|+|...+|++++.|..|++||.++++++.++..|+..|..+.|+|++++|++++.  
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--  284 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--  284 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--
Confidence            999988888889999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                       |..+++||+++.+.+..+++|+..++++.|+| ...+|.+|+.||.|..|.+...+++..+...|...|.+++|+|=|.
T Consensus       285 -D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh  363 (464)
T KOG0284|consen  285 -DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH  363 (464)
T ss_pred             -CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence             99999999999999999999999999999999 6678999999999999999877778788878889999999999999


Q ss_pred             EEEEEeCCCeEEEEeCC
Q psy519          235 TLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~  251 (351)
                      +|++|+.|.++++|.-.
T Consensus       364 il~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  364 ILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eEeecCCCcceeeeccC
Confidence            99999999999999754

>KOG0285|consensus

Probab=100.00  E-value=2e-39  Score=257.83  Aligned_cols=280  Identities=23%  Similarity=0.409  Sum_probs=252.7

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      +.+...+|.+-|.|+++.|.  .+++++|+.|+++.|||+.++     +.+|...|..+++++...| ++++.|+.|+.|
T Consensus       143 l~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45667899999999999999  999999999999999999998     7899999999999999988 999999999999


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      |++..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.   
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~---  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH---  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      |++|++||++.++....+..|...+++++.+|....+++++.|. |+-|++..+..+..+. .+..-+++++.+.|+ ++
T Consensus       298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls-gh~~iintl~~nsD~-v~  374 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS-GHNAIINTLSVNSDG-VL  374 (460)
T ss_pred             CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc-cccceeeeeeeccCc-eE
Confidence            99999999999999999999999999999999999999998875 8999999999888864 667889999998765 67


Q ss_pred             EEEeCCCeEEEEeCCCCceeee-------------eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          237 VTGSLTGTVQFYGWPSASKIGI-------------GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~-------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ++|+++|.+.+||.+++...+.             ..+...+|-..|..+.++..+.++++++.-+.
T Consensus       375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            8999999999999998865542             34455677778888888888876666655443

>KOG0295|consensus

Probab=100.00  E-value=2.9e-39  Score=257.22  Aligned_cols=276  Identities=20%  Similarity=0.306  Sum_probs=249.4

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      +.+-..+|..+|..+.|+|+  -..+++++.|++|++||..++     +.+|.+.+..++|+..|++ ++++.|-.+++|
T Consensus       100 l~~~l~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             chhhhhccccceeeeeeccC--ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            44556789999999999999  999999999999999999988     8999999999999999998 999999999999


Q ss_pred             eCCC-CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           77 SLEQ-MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        77 ~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      |.++ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..++.+.||.++++++.  
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~--  255 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN--  255 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC--
Confidence            9987 5677788899999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCC---------------CcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---------------GKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                       |.++++|-+.++++...+..|+.++.+++|.|.               +.++.+++.|+.|++||+.++.++.++. .|
T Consensus       256 -dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-gh  333 (406)
T KOG0295|consen  256 -DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GH  333 (406)
T ss_pred             -CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cc
Confidence             999999999999999999999999999999773               2589999999999999999999999986 68


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-----cceeEEecCCceeeeeeccceeeE
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV-----YPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      ...|..++|+|.|+||+++.+|+++++||+++++.+....     +..+.|.-+..+.++++.+...++
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  402 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence            8899999999999999999999999999999999887643     345666666666666666654443

>KOG0279|consensus

Probab=100.00  E-value=6.6e-39  Score=246.82  Aligned_cols=240  Identities=25%  Similarity=0.407  Sum_probs=212.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ....||...|..++.+++  |++.++++.|+.+++||+..+     +.+|...|.+++|++|.+. ++|+.|.+|++|++
T Consensus        57 r~~~GHsH~v~dv~~s~d--g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSD--GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeccceEecceEEccC--CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            456789999999999999  999999999999999999996     8899999999999999976 99999999999998


Q ss_pred             CCCeeeEEeeC-CCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           79 EQMYPLRIFVG-HKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        79 ~~~~~~~~~~~-~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ........... +.+-|+|+.|+|+  ..+|++++.|++|++||+++-+....+.+|.+.++.+++||||.++++|+.  
T Consensus       135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk--  212 (315)
T KOG0279|consen  135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK--  212 (315)
T ss_pred             cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC--
Confidence            86554433332 2788999999997  679999999999999999999999999999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC--------CEEEE
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE--------PVTSL  227 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~v~~~  227 (351)
                       ||.+.+||++.++.+..+ .+...|.+++|+|+.-.|+.+.. ..|+|||+.++..+..+.....+        ...++
T Consensus       213 -dg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl  289 (315)
T KOG0279|consen  213 -DGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL  289 (315)
T ss_pred             -CceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence             999999999999998887 57889999999998777766654 45999999998887766543322        35778


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +|++||..|++|-.|+.|++|.+.
T Consensus       290 aws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  290 AWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEcCCCcEEEeeecCCcEEEEEee
Confidence            999999999999999999999875

>KOG0273|consensus

Probab=100.00  E-value=3.7e-38  Score=258.71  Aligned_cols=299  Identities=20%  Similarity=0.289  Sum_probs=255.2

Q ss_pred             CcCCCCccceEEeeecCCcccc-EEEEecCCCceEEEecCCc-------------------cCCCccceEEEEECCCCcE
Q psy519            5 HLNHGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY-------------------TSGHDMTVWSVEACSKGLA   64 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~i~~~~~~~~~~~   64 (351)
                      .+.. |..+|.+.+|+|.  .+ +|++++.+-..++|++...                   .......|++++|+.+|.+
T Consensus       173 kvl~-~~~~V~~~~WnP~--~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPL--RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             eecc-CCCceEEEecCch--hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            3444 9999999999998  66 8999999999999999862                   1122367999999999988


Q ss_pred             -EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           65 -LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        65 -~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                       ++|..||.+++|+.. +..+.++..|+++|.++.|+..|.+|++++.|+++.+||..+++..+.+..|..+-..+.|-.
T Consensus       250 LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             EEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence             999999999999965 567888999999999999999999999999999999999999999999988888878899974


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                       ...+++++.   |+.|+++-+....++.++.+|.++|.++.|+|.+.+|++++.|++++||.+........+. .|...
T Consensus       329 -~~~F~ts~t---d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hske  403 (524)
T KOG0273|consen  329 -NDEFATSST---DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKE  403 (524)
T ss_pred             -CceEeecCC---CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccc
Confidence             456777777   9999999999999999999999999999999999999999999999999998888777775 56788


Q ss_pred             EEEEEEcCCC---------CEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          224 VTSLVWSVTG---------ETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       224 v~~~~~~~~~---------~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      |..+.|+|+|         ..+++++.|++|++||+..+.+++.     .++.+++|||+|.++|++..++   .+.+|+
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg---~V~iws  480 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG---CVHIWS  480 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC---eeEecc
Confidence            9999999964         4789999999999999999998875     5888999999999999998887   556666


Q ss_pred             ceeCceEEEee-----EEEEecCCceeeccE
Q psy519          290 EIVGPVVVVES-----FIVEIRPDKWYEANL  315 (351)
Q Consensus       290 ~~~g~~~~~~~-----~~~~~~~~~~~~~~~  315 (351)
                      ..+|+......     +.+.|+.++.++..+
T Consensus       481 ~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  481 TKTGKLVKSYQGTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             ccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence            66665433221     225666776665544

>KOG0291|consensus

Probab=100.00  E-value=4.6e-38  Score=271.70  Aligned_cols=273  Identities=21%  Similarity=0.357  Sum_probs=239.9

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCC-CceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQ-KNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~-~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      |.+.-...+|..++|+..  |+.||.|+.. |.+-||++...     .++|...+++++++|||++ ++|+.||.|+|||
T Consensus       301 h~LSis~~~I~t~~~N~t--GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  301 HSLSISDQKILTVSFNST--GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEeecccceeeEEEeccc--CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            333445578999999999  9999998765 89999999887     7899999999999999999 9999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      ..++-+..+|..|...|+.+.|+..++.+++++.||+|+.||+...+..+++.. .+-...|++..|.|..+++|+.   
T Consensus       379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~---  455 (893)
T KOG0291|consen  379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ---  455 (893)
T ss_pred             ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc---
Confidence            999999999999999999999999999999999999999999999999988864 3356678999999999999887   


Q ss_pred             CC-eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC-cEEEEeeccCCCCEEEEEEcCCCC
Q psy519          157 DK-AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG-RVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       157 d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      |. .|.+|++++|+.+-.+.+|++||.+++|+|++..|++++.|.+|++||+-.. ....++  .....+..++|+|+|+
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGK  533 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCC
Confidence            54 5999999999999999999999999999999999999999999999998654 233344  4456799999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeee-------------------------eecceeEEecCCceeeeeeccceeeE
Q psy519          235 TLVTGSLTGTVQFYGWPSASKIGI-------------------------GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~~~-------------------------~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      .|++++.||+|.+||.+.+..+..                         ..+..+.+|+||..+..++....+..
T Consensus       534 elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  534 ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI  608 (893)
T ss_pred             eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence            999999999999999987655521                         45678999999999888877765543

>KOG0266|consensus

Probab=100.00  E-value=1.5e-37  Score=275.58  Aligned_cols=276  Identities=26%  Similarity=0.403  Sum_probs=239.6

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC-
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL-   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~-   78 (351)
                      ..+...|.++.|+|+  |+.+++++.++.+++|+....       +.+|...|.+++|+|++++ ++++.|++|++||+ 
T Consensus       156 ~~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            345789999999999  999999999999999999332       5789999999999999988 99999999999999 


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      ..+..++++.+|...|++++|+|+++.+++|+.|++|++||++++++...+.+|...|.+++|++++++|++++.   |+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---d~  310 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---DG  310 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---Cc
Confidence            556889999999999999999999999999999999999999999999999999999999999999999999988   99


Q ss_pred             eEEEEEccCCc--eeEEeccCCCC--EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC--CEEEEEEcCC
Q psy519          159 AVRLWSITDGA--SVRVFSDHVSP--VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE--PVTSLVWSVT  232 (351)
Q Consensus       159 ~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~  232 (351)
                      .|++||+.++.  +...+..+..+  ++.++|+|+++++++++.|+.+++||++.+..+..+......  .+.+...++.
T Consensus       311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            99999999998  45666666555  999999999999999999999999999999888887644333  4555566789


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +.++++|+.|+.|++|+..++..+..      ..+..+.++|....++..+.. .+..+++|.
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~-~d~~~~~w~  452 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE-GDGLIRLWK  452 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC-CCceEEEec
Confidence            99999999999999999998765543      445567888888887776632 233555554

>KOG0315|consensus

Probab=100.00  E-value=1.7e-37  Score=235.40  Aligned_cols=264  Identities=20%  Similarity=0.281  Sum_probs=226.3

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe--eeEEeeCCCCCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY--PLRIFVGHKQDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~i~~i   97 (351)
                      .-+|++++.|.+|++|...++     .+...+.|+.+...|+++.+++.....||+||++++.  ++.++.+|...|+.+
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            358999999999999999998     5566789999999999999666677899999998765  588999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe-cc
Q psy519           98 RFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF-SD  176 (351)
Q Consensus        98 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-~~  176 (351)
                      .|..+|+.+++|++||+++|||++...+.+.++ +..+|.++..+|+...|+++..   +|.|++||+.+......+ ..
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dq---sg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQ---SGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecC---CCcEEEEEccCCccccccCCC
Confidence            999999999999999999999999977777776 7799999999999999999998   999999999987655554 33


Q ss_pred             CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE------EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV------ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      ...++.++...|||++++.+...|..++|++-+.+.      +.++. .|.+-+..+.+|||+++||+++.|.+++||+.
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            456899999999999999999999999999876532      33333 45577999999999999999999999999999


Q ss_pred             CCC-ceeee-----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          251 PSA-SKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       251 ~~~-~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      ++. +....     ..+-.++||.+|.++++++++.   ..++|+.+.|+.+
T Consensus       245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGKEV  293 (311)
T ss_pred             CCceeeEEEeecCCceEEeeeeccCccEEEecCCCC---ceeecccccCcee
Confidence            987 21111     3456899999999999999885   6788998888744

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.4e-37  Score=257.86  Aligned_cols=271  Identities=28%  Similarity=0.462  Sum_probs=243.1

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|..+|.+++|+|+  +++|++++.+|.+++|++...     ...|...+..+.|++++.+ ++++.++.+++|++.+
T Consensus         5 ~~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           5 LKGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hcccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            3489999999999999  999999999999999999865     6678889999999999965 8999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ++....+..|...+.++.|+|+++++++++.++.+.+||+++++....+..|...+.+++|+|++.++++++.   ++.|
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i  159 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ---DGTI  159 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC---CCcE
Confidence            8888888899999999999999888888888999999999988888888888999999999999999999887   9999


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ++||+++++.+..+..|...+.++.|+|+++.+++++.++.+++||++.++.+..+. .+...+.++.|+|++.++++++
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            999999898888888888899999999999999999999999999999888877764 4556899999999988999888


Q ss_pred             CCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceee
Q psy519          241 LTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       241 ~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      .||.+++|++.+++....     ..+..+.|+|++..+++++.++.+.
T Consensus       239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence            899999999998776554     3567799999999999888887543

>KOG0318|consensus

Probab=100.00  E-value=1.7e-36  Score=252.26  Aligned_cols=321  Identities=18%  Similarity=0.245  Sum_probs=248.8

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------------------------
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------------------------   45 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------------------------   45 (351)
                      ..+...|..+++-..|||.  |.++|+|...|.|+||+....                                      
T Consensus        52 ~~iYtEH~~~vtVAkySPs--G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPS--GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eeeeccccceeEEEEeCCC--ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            3456678899999999999  999999999999999998773                                      


Q ss_pred             -------------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe
Q psy519           46 -------------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS  110 (351)
Q Consensus        46 -------------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  110 (351)
                                   +.+|+..|++++|-|..-+  ++|+.|++|.+|+=.-.+....++.|..-|.++.|+|||+++++++
T Consensus       130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence                         4455555555555555433  5566666666665554555566677999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEec---cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee----------------
Q psy519          111 YDKAVRLWSITDGASVRVFS---DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV----------------  171 (351)
Q Consensus       111 ~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~----------------  171 (351)
                      .||.+.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.   |.+++|||+.+.+++                
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa---Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA---DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC---CceEEEEEeeccceEEEeecCCchhceEEEE
Confidence            99999999999999999997   79999999999999999999998   999999998765432                


Q ss_pred             ---------------------------EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE-----------
Q psy519          172 ---------------------------RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI-----------  213 (351)
Q Consensus       172 ---------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------  213 (351)
                                                 ..+.+|...|+++..+||+++|++|+.||.|.-||..++..-           
T Consensus       287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence                                       233468899999999999999999999999999998654211           


Q ss_pred             E--------------------Eeec-------------------------------------------------cCCCCE
Q psy519          214 S--------------------RFHL-------------------------------------------------QEHEPV  224 (351)
Q Consensus       214 ~--------------------~~~~-------------------------------------------------~~~~~v  224 (351)
                      .                    .+..                                                 ...-..
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~  446 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES  446 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence            0                    0000                                                 000124


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-------eeeecceeEEecCCceeeeeeccceeeEEEeeecee-----
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSASKI-------GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV-----  292 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----  292 (351)
                      .+++++|++..+++|+.|+.|++|.+......       +..++..+++|||+.+||++...+.+-.+.+-..+.     
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w  526 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW  526 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence            66788999999999999999999999875533       237788999999999999988887655443322111     


Q ss_pred             -CceEEEeeEEEEecCCceeeccEEEecCCccccceeeeee
Q psy519          293 -GPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQ  332 (351)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  332 (351)
                       -|...+.+  +.++|+...++.. ..|.++-+|+++.-..
T Consensus       527 ~FHtakI~~--~aWsP~n~~vATG-SlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  527 AFHTAKINC--VAWSPNNKLVATG-SLDTNVIIYSVKKPAK  564 (603)
T ss_pred             eeeeeeEEE--EEeCCCceEEEec-cccceEEEEEccChhh
Confidence             14445555  7899999877655 6788899998876433

>KOG0645|consensus

Probab=100.00  E-value=2e-36  Score=232.29  Aligned_cols=273  Identities=21%  Similarity=0.310  Sum_probs=233.2

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCc
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTT   72 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~   72 (351)
                      ..+...+|+.++..++|+|.. |..||+++.|+.|++|+....         ..+|...|++++|+|.|++ ++++.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            345678899999999999973 678999999999999999853         4579999999999999999 99999999


Q ss_pred             EEEEeCCC--CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---ceeEEeccCCCCeEEEEEccCCCE
Q psy519           73 ARLWSLEQ--MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        73 i~vw~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      +.||.-..  .+++..+.+|...|.+++|+++|++||++++|++|.+|.+..+   ++...+++|...|..+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            99998764  4678899999999999999999999999999999999999754   467788999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccC---CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITD---GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      |++++.   |.+|++|.-..   -.+.+++.+|...|.+++|+|.|..|++++.|+.++||-..+     .+...+..++
T Consensus       165 L~S~SY---DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~  236 (312)
T KOG0645|consen  165 LFSCSY---DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRAL  236 (312)
T ss_pred             eEEecc---CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchhcccce
Confidence            999999   99999998662   367889999999999999999999999999999999998652     2333456789


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------ceeeeeecceeEEecC-CceeeeeeccceeeEEE
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSA------------SKIGIGVYPRCAAQPV-GFEAATLAANSRVRTLR  286 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~------------~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~  286 (351)
                      ..+.|.  ...|++++.|+.|++|.-...            ...+...++++.|.|. ...|++++.+|.++.|.
T Consensus       237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            999998  557999999999999986642            1223468899999995 45677777777555444

>KOG0263|consensus

Probab=100.00  E-value=1.9e-38  Score=275.71  Aligned_cols=201  Identities=40%  Similarity=0.736  Sum_probs=194.6

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ....||.++|..+.|+|+  .++|++++.|+++++|.+.+.     ..+|..+|+.+.|+|.|.+ ++++.|++-++|..
T Consensus       445 ~~L~GH~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             EEeecCCCceeeeeeccc--ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            446799999999999999  999999999999999999998     8899999999999999988 99999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      ...++.+.+.+|-..|.|+.|+|+..++++|+.|.++++||+.+|..++.|.+|.++|.+++|+|+|.+|++|+.   |+
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e---d~  599 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE---DG  599 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc---CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      .|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++|+.|+.|++||+...
T Consensus       600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999999999999999998643

>KOG0318|consensus

Probab=100.00  E-value=2.3e-35  Score=245.47  Aligned_cols=275  Identities=22%  Similarity=0.275  Sum_probs=232.0

Q ss_pred             CCCccceEEeeecCCcccc-EEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            8 HGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      .||...|.+++|-|.  .. ++++++.|+.|.+|+-...     ...|..-|+|+.|+|||.+ ++++.||++.+||=.+
T Consensus       144 ~GhSr~ins~~~Kps--RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPS--RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eccceeEeeeeccCC--CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence            589999999999998  55 6899999999999987766     7789999999999999987 9999999999999999


Q ss_pred             CeeeEEee---CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-------------------------------
Q psy519           81 MYPLRIFV---GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV-------------------------------  126 (351)
Q Consensus        81 ~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------  126 (351)
                      ++.+..+.   +|++.|.+++|+||+..+++++.|.++++||+.+.+.+                               
T Consensus       222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~  301 (603)
T KOG0318|consen  222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT  301 (603)
T ss_pred             ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence            99999887   89999999999999999999999999999999876432                               


Q ss_pred             ------------EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee-----------EEe---------
Q psy519          127 ------------RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV-----------RVF---------  174 (351)
Q Consensus       127 ------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~-----------~~~---------  174 (351)
                                  ..+.+|...|+++..+|++.+|++|+.   ||.|.-||..++..-           ..+         
T Consensus       302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy---DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY---DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             EEEecccCCChhheecccccceeEEEEcCCCCEEEeecc---CceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence                        233478899999999999999999999   999999998654210           000         


Q ss_pred             -----------------------------------------------------cc--------CCCCEEEEEECCCCcEE
Q psy519          175 -----------------------------------------------------SD--------HVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       175 -----------------------------------------------------~~--------~~~~i~~~~~~~~~~~l  193 (351)
                                                                           +.        ......+++++|+++.+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence                                                                 00        01124578899999999


Q ss_pred             EEEcCCCeEEEEEcCCCcEEEE-eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------eeeecceeEE
Q psy519          194 ASGGEDGLVLTHELTTGRVISR-FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI------GIGVYPRCAA  266 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~  266 (351)
                      ++|+.||.+++|.+..+..... ....|..+++.++||||+.+||++...+.+.+||+.+.+..      ++..+..++|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW  538 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW  538 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence            9999999999999987553322 34467899999999999999999999999999999987653      4578889999


Q ss_pred             ecCCceeeeeeccceeeEEEe
Q psy519          267 QPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       267 s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      +|+...+|+++-|..+.+|.+
T Consensus       539 sP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  539 SPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             CCCceEEEeccccceEEEEEc
Confidence            999999999988876554443

>KOG0315|consensus

Probab=100.00  E-value=3.7e-36  Score=228.16  Aligned_cols=265  Identities=18%  Similarity=0.277  Sum_probs=228.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEE
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAF  141 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~  141 (351)
                      +++++.|.+||+|...+|.+.++++.....|..+...|+++.|++++ .-.|++||+++++  ++.++.+|...|+++.|
T Consensus        13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF   91 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF   91 (311)
T ss_pred             EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence            49999999999999999999999998889999999999999999887 4679999999866  57889999999999999


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      ..+|+++++|++   ||+++|||+|...+.+.+ .|..+|+++..+|+...|++|..+|.|++||+.+..+...+..+..
T Consensus        92 ~~dgrWMyTgse---Dgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   92 QCDGRWMYTGSE---DGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             eecCeEEEecCC---CceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            999999999999   999999999997766666 4679999999999999999999999999999998877776655556


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-----------eeeecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI-----------GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ..+.++...|||.+|+.+...|..++|++.+.+..           +...+.++.+||++++|++.+++.++++|..-+.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            78999999999999999999999999999765322           2366778999999999999999997776653332


Q ss_pred             ------eeCceEEEeeEEEEecCCceeeccEEEecCCccccceeeeeeeeec
Q psy519          291 ------IVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPV  336 (351)
Q Consensus       291 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  336 (351)
                            .+|+..++..  -.||.|+.|+... ..|...+.|++++.++....
T Consensus       248 ~kle~~l~gh~rWvWd--c~FS~dg~YlvTa-ssd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  248 FKLELVLTGHQRWVWD--CAFSADGEYLVTA-SSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             eeeEEEeecCCceEEe--eeeccCccEEEec-CCCCceeecccccCceeeec
Confidence                  4455555655  5799999998766 67788999999988765443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.8e-35  Score=278.62  Aligned_cols=270  Identities=16%  Similarity=0.201  Sum_probs=228.5

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCC-CcE-EEEeCCCcEE
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSK-GLA-LTGSRDTTAR   74 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~   74 (351)
                      +|...|.+++|+|+  |++||+|+.|+.|++|+....            ...+...+.+++|++. +.+ ++++.|++|+
T Consensus       481 ~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        481 NSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             CCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            48899999999999  999999999999999997542            1123467889999875 444 9999999999


Q ss_pred             EEeCCCCeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc-cCCCEEEEEe
Q psy519           75 LWSLEQMYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS-PCGKYLASGG  152 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~  152 (351)
                      +||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+.|++||++++..+..+.. ...+.++.|+ +++.++++|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEe
Confidence            999999999999999999999999997 788999999999999999999988888864 4678999995 5799999999


Q ss_pred             cCCCCCeEEEEEccCCc-eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC------cEEEEeeccCCCCEE
Q psy519          153 TGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG------RVISRFHLQEHEPVT  225 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~  225 (351)
                      .   |+.|++||+++++ .+..+.+|...|..+.|. ++.+|++++.|+.|++||++.+      ..+..+. .|...+.
T Consensus       638 ~---dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~  712 (793)
T PLN00181        638 A---DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKN  712 (793)
T ss_pred             C---CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCee
Confidence            8   9999999998865 466778899999999997 7889999999999999999743      4555554 4567789


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceee------------------eeecceeEEecCCceeeeeeccceeeEEE
Q psy519          226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKIG------------------IGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      .++|+|++.+|++|+.|+.|++|+......+.                  ...+.+++|+|++..+++++.+|.++.|.
T Consensus       713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            99999999999999999999999976553321                  12467889999999999999888665544

>KOG0296|consensus

Probab=100.00  E-value=1.1e-35  Score=237.07  Aligned_cols=273  Identities=18%  Similarity=0.221  Sum_probs=237.4

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ....|+.+|++++.+|+  .+++++|+.|..-.+|+..++     +.+|...|+++.|+.+|.+ +||+.+|.|+||+..
T Consensus        59 tF~~H~~svFavsl~P~--~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPN--NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             ehhhcCCceEEEEeCCC--CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            34679999999999999  999999999999999999988     8899999999999999998 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      ++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..   ||+
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~---dgt  213 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD---DGT  213 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec---Cce
Confidence            99988888767778888999999999999999999999999998889999999999999999999999999999   999


Q ss_pred             EEEEEccCCceeEEecc---------------------------------------------------CCCCEEEEEECC
Q psy519          160 VRLWSITDGASVRVFSD---------------------------------------------------HVSPVLSIAFSP  188 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~---------------------------------------------------~~~~i~~~~~~~  188 (351)
                      |++||+.+++++..+..                                                   +...+.++.+.|
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            99999999877655541                                                   011122233333


Q ss_pred             ---CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----ee
Q psy519          189 ---CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GV  260 (351)
Q Consensus       189 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~  260 (351)
                         .=.++|+|+.||.|.|||+...+..+.+  .|...|..+.|-+ ..+|++++.+|.|+.||.++|+.+..     ..
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~  370 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG  370 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence               3356788999999999999877766554  6778899999998 78999999999999999999999865     56


Q ss_pred             cceeEEecCCceeeeeeccceeeEEE
Q psy519          261 YPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      +..++++|+++.+++++.++..++++
T Consensus       371 Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  371 ILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            67889999999999999988766554

>KOG0291|consensus

Probab=100.00  E-value=9.6e-35  Score=251.28  Aligned_cols=324  Identities=18%  Similarity=0.230  Sum_probs=282.4

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------------------------
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------------------------   45 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------------------------   45 (351)
                      .+...+|...|.++-|..+  ..-+.+.+.||.+.+|.....                                      
T Consensus       182 ~~~l~gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~  259 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH  259 (893)
T ss_pred             eEeccCCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence            4667899999999999999  888999999999999988711                                      


Q ss_pred             -cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEeCCC
Q psy519           46 -TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD-KAVRLWSITD  122 (351)
Q Consensus        46 -~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~i~d~~~  122 (351)
                       +......+++.+|++.-.+ +++-..|...+|++.....++.+.-...+|..++|+..|..|+.|+.. |.+-+|+.++
T Consensus       260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence             2223367899999998877 888899999999999999999998888899999999999999998865 8999999999


Q ss_pred             CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeE
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  202 (351)
                      ...+...++|...+.+++++|||+++++|+.   ||.|++||.+++-+..++..|...|+.+.|+..|+.+++.+-||+|
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             cceeeeccccccceeeEEECCCCcEEEeccC---CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence            9888888999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceee-----eeecceeEEecCCceeeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-TVQFYGWPSASKIG-----IGVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~  276 (351)
                      +.||+...+..+++..+...+..+++..|.|.++.+|+.|. .|.+|++++|+.+.     ..++.+++|+|++..|+++
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence            99999999999999877777888999999999999999885 69999999999884     4888999999999999999


Q ss_pred             eccceeeEEEeeece-eCceEEEee--EEEEecCCceeeccEEEecCCccccceeeeeee
Q psy519          277 AANSRVRTLREMHEI-VGPVVVVES--FIVEIRPDKWYEANLIVLDDDLKECNLETYSQM  333 (351)
Q Consensus       277 ~~~~~~~~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  333 (351)
                      +.|.+++.|.+++.. +-++..+..  ..+.|+|+|..++.. ..+..|..||.+...+.
T Consensus       497 SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  497 SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQV  555 (893)
T ss_pred             cccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceee
Confidence            998876666665542 223333332  236899999977655 67889999998876665

>KOG0276|consensus

Probab=100.00  E-value=4e-36  Score=254.77  Aligned_cols=273  Identities=19%  Similarity=0.247  Sum_probs=240.0

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ++.+-...+..+|.++.|+|.  ...++++-.+|.|.||+.++.     +....-+|++..|-+..+. ++|+.|..|+|
T Consensus         4 ~~krk~~~rSdRVKsVd~HPt--ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPT--EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hhhhHhhccCCceeeeecCCC--CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence            344444558899999999999  999999999999999999988     4556678889999888887 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEcc-CCCEEEEEec
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  153 (351)
                      |+.++++.+..|..|...|++++.+|.-.++++++.|-+|++||.+.. .+.+++.+|...|++++|+| |.+.+++++-
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            999999999999999999999999999999999999999999999754 57788999999999999999 6788999999


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                         |++|++|.+.+..+..++++|...|.++++-+  |..+|++|+.|..+++||.++..++++++ .|...|..++|+|
T Consensus       162 ---DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  162 ---DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHP  237 (794)
T ss_pred             ---cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecC
Confidence               99999999999999999999999999999988  44699999999999999999999999886 6778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccc
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      .-.++++|++||+++||+..+-+....     .++..++-.+.+..++.+...+
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence            999999999999999999887665543     4444555555555555555544

>KOG1407|consensus

Probab=100.00  E-value=4.6e-35  Score=223.71  Aligned_cols=268  Identities=19%  Similarity=0.169  Sum_probs=238.3

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCC--cEEEEeCCCcEEEEe
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKG--LALTGSRDTTARLWS   77 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~   77 (351)
                      ..+|..++.+++|+.+  |..|++|+.|+.+.+|++...       ..+|.+.|-.++|.|..  .+++++.|.+|++||
T Consensus        16 ~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhhcceEEEEccc--CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4578899999999999  999999999999999999876       77899999999999865  459999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +..+++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+ ....+.-+.|+.++++++....   .
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G---l  168 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG---L  168 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC---C
Confidence            99999998887655555 58899999999999999999999999887766654 4566778899877777666554   7


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      |.|.|.....-+++..++.|.....++.|+|+|++||+|+.|-.+.+||+...-+++.+. ...-+|+.+.|+.||++||
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcceee
Confidence            999999999999999999999999999999999999999999999999999888888775 5678999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeecccee
Q psy519          238 TGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      +|++|..|-|=++++|..+..    .+...++|+|....||+++.+...
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence            999999999999999998875    555689999999999999998765

>KOG0295|consensus

Probab=100.00  E-value=8.3e-36  Score=237.62  Aligned_cols=240  Identities=28%  Similarity=0.419  Sum_probs=226.9

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      .-.+||...+..++|+..  |++||+++.|-.+++||..+.      ..+|...|.++.|-|.|.+ ++++.|.+|+.|+
T Consensus       144 ~~LrGHt~sv~di~~~a~--Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDAS--GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE  221 (406)
T ss_pred             hhhhccccceeEEEEecC--ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence            456899999999999999  999999999999999999886      7899999999999999988 9999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC-------------
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-------------  144 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-------------  144 (351)
                      +.++.++.++.+|.+-+..++.+.||.++++++.|.++++|-+.++++...++.|+.+|.|++|.|.             
T Consensus       222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999773             


Q ss_pred             --CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC
Q psy519          145 --GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE  222 (351)
Q Consensus       145 --~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  222 (351)
                        ++++.+++.   |++|++||+.++.++.++.+|...|+.++|+|.|+||+++..|+++++||++++++++.+. .|..
T Consensus       302 ~~~~~l~s~Sr---DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~h  377 (406)
T KOG0295|consen  302 NGGQVLGSGSR---DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEH  377 (406)
T ss_pred             CCccEEEeecc---cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcc
Confidence              247888877   9999999999999999999999999999999999999999999999999999999999987 6778


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      -++++.|+.+..++++|+-|..+++|..
T Consensus       378 fvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  378 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEEecCCCCceEEeccccceeeeeec
Confidence            8999999999999999999999999974

>KOG0316|consensus

Probab=100.00  E-value=2.9e-35  Score=221.64  Aligned_cols=265  Identities=18%  Similarity=0.265  Sum_probs=230.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC-cEEEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG-LALTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~vw~~   78 (351)
                      ++...+.++|.++.|+-+  |++.++++.|.+|++|+...+     ..+|...|..++.+.|+ ++++|+.|..+.+||+
T Consensus        11 ~~l~~~qgaV~avryN~d--GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVD--GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             eeecccccceEEEEEccC--CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            445788999999999999  999999999999999999887     78999999999998887 4599999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD--GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      ++|+..+.+.+|...|+.++|+.+...+++|+.|.++++||.++  .++++.+......|.++..+  +..+++|+.   
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~---  163 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV---  163 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc---
Confidence            99999999999999999999999999999999999999999976  46788888888999999884  677888888   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC--CEEEEEEcCCCC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE--PVTSLVWSVTGE  234 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~  234 (351)
                      ||+++.||+|.|+....+-  ..||++++|++|++..++++.|+.+++.|-.+|+.++.+. .|..  --...+++....
T Consensus       164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccce
Confidence            9999999999998776654  4589999999999999999999999999999999998876 3332  234567777788


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeee------cceeEEecCCceeeeeecc
Q psy519          235 TLVTGSLTGTVQFYGWPSASKIGIGV------YPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~  279 (351)
                      .+++|++||.|++||+.....+....      +..+.++|....+.++...
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence            99999999999999999887775432      4567788877666655544

>KOG0266|consensus

Probab=100.00  E-value=8e-35  Score=258.23  Aligned_cols=242  Identities=27%  Similarity=0.477  Sum_probs=217.4

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      +...+|...|..++|+|+  ++++++++.|+++++|++...      +.+|...|++++|+|++++ ++|+.|++|+|||
T Consensus       197 ~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             ccccccccceeeeEECCC--CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            334789999999999999  999999999999999999333      7899999999999999977 9999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCC--eEEEEEccCCCEEEEEec
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSP--VLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~  153 (351)
                      +++++++..+.+|...|++++|++++++|++++.|+.|++||+.++.  +...+..+...  +++++|+|++.+++++..
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            99999999999999999999999999999999999999999999998  45666665544  999999999999999998


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCC---EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSP---VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                         |+.+++||++.+.....+..|...   +.+...++.+.++++|+.|+.|++||+.++..+..+..+....+..+.++
T Consensus       355 ---d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  355 ---DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             ---CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC
Confidence               999999999999999999888774   34445577999999999999999999999888887763326789999999


Q ss_pred             CCCCEEEEEe--CCCeEEEEeCC
Q psy519          231 VTGETLVTGS--LTGTVQFYGWP  251 (351)
Q Consensus       231 ~~~~~l~~~~--~dg~i~i~~~~  251 (351)
                      |...++++++  .|+.+++|..+
T Consensus       432 ~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  432 PTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCcCeeeecCcCCCceEEEecCC
Confidence            9999999988  68999999764

>KOG0282|consensus

Probab=100.00  E-value=4.2e-36  Score=247.47  Aligned_cols=275  Identities=23%  Similarity=0.347  Sum_probs=233.8

Q ss_pred             CCcCCCCccceEEeeecC-CccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            4 SHLNHGDHKHFIQNSFKP-ETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ++..+||+..|.++.|.| .  +.+|++++.|+.|+||++...      +.+|..+|.++.|+++|.. ++++.|+.+++
T Consensus       207 ~~~~~gH~kgvsai~~fp~~--~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKK--GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             eeeccCCccccchhhhccce--eeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            567899999999999999 6  899999999999999999884      8899999999999999976 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      ||+++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|..+++++. 
T Consensus       285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD-  362 (503)
T KOG0282|consen  285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD-  362 (503)
T ss_pred             eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc-
Confidence            9999999998885 34568999999988 78899999999999999999999999999999999999999999999998 


Q ss_pred             CCCCeEEEEEccCCceeEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE---EEeeccCC--CCEEEEE
Q psy519          155 SYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI---SRFHLQEH--EPVTSLV  228 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--~~v~~~~  228 (351)
                        |+.+++|+.+.+-.++... .......++..+|+++++++-+.|+.|.+|.+...-..   +.++ .|.  +--..+.
T Consensus       363 --dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGys~~v~  439 (503)
T KOG0282|consen  363 --DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGYSCQVD  439 (503)
T ss_pred             --CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ceeccCceeeEE
Confidence              9999999998876655432 22334567899999999999999999999997543222   1222 121  4567899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCc-eeeeeeccceeeEEEee
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGF-EAATLAANSRVRTLREM  288 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~  288 (351)
                      |||||.+|++|+.||.+.+||.++-+.+..     ..+..+.|+|... .+++++.+|   .+++|
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G---~Ikiw  502 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG---LIKIW  502 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc---eeEec
Confidence            999999999999999999999998877654     5666789999876 477777776   45555

>KOG0265|consensus

Probab=100.00  E-value=7.3e-34  Score=221.22  Aligned_cols=263  Identities=21%  Similarity=0.319  Sum_probs=223.7

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC-CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE-QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      +.+|.+.|+.+.|+|+|.+ ++|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++.|.+++.||+++|
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            7899999999999999988 999999999999964 44456677899999999999999999999999999999999999


Q ss_pred             ceeEEeccCCCCeEEEEEccCCCEEE-EEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeE
Q psy519          124 ASVRVFSDHVSPVLSIAFSPCGKYLA-SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  202 (351)
                      +..+.+++|..-+..+.-+.-|..++ +++.   |+++++||+|+...++.++ ...+++++.|..++..+.+|+-|+.|
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd---D~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD---DGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCC---CceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence            99999999999999998655565554 4444   9999999999988888774 35679999999999999999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---e-eee---------eecceeEEecC
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS---K-IGI---------GVYPRCAAQPV  269 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~-~~~---------~~~~~~~~s~~  269 (351)
                      ++||++.+.....+. .|..+|+.+..+|+|.++.+-+.|.++++||++...   + +..         .....++|+|+
T Consensus       199 kvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            999999999888876 677899999999999999999999999999987532   2 222         34457999999


Q ss_pred             CceeeeeeccceeeEEE-----eeeceeCceEEEeeEEEEecCCceeeccE
Q psy519          270 GFEAATLAANSRVRTLR-----EMHEIVGPVVVVESFIVEIRPDKWYEANL  315 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      +..+..++++..+.+|.     +.-...|+...+..  +.|.|.......+
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~--~~Fhp~e~iils~  326 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE--VDFHPTEPIILSC  326 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCcceeEEE--eeecCCCcEEEEe
Confidence            99999888887666553     22335678777877  7899988766544

>KOG0319|consensus

Probab=100.00  E-value=4.7e-35  Score=252.60  Aligned_cols=243  Identities=27%  Similarity=0.396  Sum_probs=222.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCC-cE-EEEeCCCcE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG-LA-LTGSRDTTA   73 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i   73 (351)
                      .+.+||+..|.+++...+  |.+|++++.|.++++|.++++         ..+|.+.|.+++++..+ .+ ++++.|+++
T Consensus       359 ~ii~GH~e~vlSL~~~~~--g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSS--GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             EEEeCchhheeeeeeccc--CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence            467899999999997777  899999999999999998555         77999999999997766 34 999999999


Q ss_pred             EEEeCCCCeee-----E----EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC
Q psy519           74 RLWSLEQMYPL-----R----IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  144 (351)
Q Consensus        74 ~vw~~~~~~~~-----~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  144 (351)
                      ++|++...+..     .    ....|...|++++++|+.+++++|+.|.+.++|+++.......+.+|...|.|+.|+|.
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN  516 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc
Confidence            99999762211     1    22469999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      .+.+++++.   |++|+||.+.+..+++++.+|...|..+.|-.+++.|++++.||.+++|+++++.++.++. .|...|
T Consensus       517 dq~laT~Sg---D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~Drv  592 (775)
T KOG0319|consen  517 DQLLATCSG---DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRV  592 (775)
T ss_pred             cceeEeccC---CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hcccee
Confidence            999999998   9999999999999999999999999999999999999999999999999999999999997 688999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .+++-+|.+.++++|+.||.|.+|.-.+.
T Consensus       593 WaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  593 WALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeecCccceeEecCCCeEEEEeecCcH
Confidence            99999999999999999999999976543

>KOG0285|consensus

Probab=100.00  E-value=1.2e-34  Score=230.66  Aligned_cols=241  Identities=22%  Similarity=0.334  Sum_probs=219.3

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.|.|+++.|.+.+ ++|+.|++++|||+.+++...++.+|...|..+++++...++++++.|+.|+.||+...+
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk  226 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK  226 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence            7899999999999999888 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      .++.+.+|-+.|.|++.+|.-..|++++.   |..+++||+|+...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~gr---Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl  303 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGR---DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL  303 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEecCC---cceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence            99999999999999999999999999999   999999999999999999999999999999998888999999999999


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeecc
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~  279 (351)
                      ||++.++....+. .|...+++++.+|....+|+++.| .|+-|+++.+..++.     ..+..++.+.|+..+ +++. 
T Consensus       304 WDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~G~d-  379 (460)
T KOG0285|consen  304 WDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-SGGD-  379 (460)
T ss_pred             eeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEE-EcCC-
Confidence            9999999888875 677899999999999999999876 799999999987764     456677888877543 3333 


Q ss_pred             ceeeEEEeeeceeCce
Q psy519          280 SRVRTLREMHEIVGPV  295 (351)
Q Consensus       280 ~~~~~~~~~~~~~g~~  295 (351)
                        -+.+.+|+-.+|+.
T Consensus       380 --ng~~~fwdwksg~n  393 (460)
T KOG0285|consen  380 --NGSIMFWDWKSGHN  393 (460)
T ss_pred             --ceEEEEEecCcCcc
Confidence              34788888877763

>KOG0643|consensus

Probab=100.00  E-value=2e-33  Score=215.39  Aligned_cols=273  Identities=20%  Similarity=0.258  Sum_probs=231.1

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      +..||..+++.+.|+.+  |++|.+++.|....+|-..++     +.+|.+.|+|++...+.+. ++|+.|.++++||++
T Consensus         5 ~l~GHERplTqiKyN~e--GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE--GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCC--CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            46789999999999999  999999999999999988665     8899999999999988877 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCC-------CCceeEEeccCCCCeEEEEEccCCCE
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSY-----DKAVRLWSIT-------DGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      +|+++..++ ...+|..+.|+++|++++....     .+.|.++|++       ..++...+..+.+.++.+-|.|-++.
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            999998886 5678999999999998887654     4689999998       44567777778899999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCc-eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEE
Q psy519          148 LASGGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS  226 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  226 (351)
                      |++|..   ||.|.+||+++++ .+...+.|...|+.++++||..++++++.|.+-++||.++-+.++++.  ...++++
T Consensus       162 ii~Ghe---~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~  236 (327)
T KOG0643|consen  162 IIAGHE---DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNT  236 (327)
T ss_pred             EEEecC---CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccc
Confidence            999999   9999999999985 445557899999999999999999999999999999999999998884  5679999


Q ss_pred             EEEcCCCCEEEEEeCCCe--EEEEeCCCCc------------ee-----eeeecceeEEecCCceeeeeeccceeeEEE
Q psy519          227 LVWSVTGETLVTGSLTGT--VQFYGWPSAS------------KI-----GIGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~--i~i~~~~~~~------------~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      .+++|-...++.|+....  |.-=+.+.++            .+     +-+++++++|+|+|+..+.++.+|.++...
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            999997777766554321  2222222221            11     237899999999999999999998776554

>KOG0275|consensus

Probab=100.00  E-value=5e-35  Score=230.37  Aligned_cols=276  Identities=19%  Similarity=0.258  Sum_probs=242.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCCccceEEEEECCCCcE-EEEeCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGHDMTVWSVEACSKGLA-LTGSRD   70 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~-~~~~~d   70 (351)
                      ++.-|..+.+-|..||||  |++|++|+.||-|.+|+.-++             +.-+..+|.|+.|+.|... ++|+.|
T Consensus       207 ~IKFg~KSh~EcA~FSPD--gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPD--GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             heecccccchhheeeCCC--CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence            455667788999999999  999999999999999999877             4457789999999999987 999999


Q ss_pred             CcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEE
Q psy519           71 TTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  149 (351)
                      |.|+||.+++|++++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+++|.+.|+...|.++|..++
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII  364 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence            999999999999999986 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEecc--CCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--CCE
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--EPV  224 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v  224 (351)
                      +++.   ||+|++|+..+.+++.+++.  ...+|..+-.-| +...++++...+++++.++ .|+.++.+.....  +..
T Consensus       365 saSs---DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  365 SASS---DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF  440 (508)
T ss_pred             EecC---CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence            9999   99999999999999988865  345778887777 5578999999999999998 5788888753322  567


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-----ceeEEecCCceeeeeeccceeeEEEeee
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY-----PRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      .+.+.+|.|.++.+.++|+.++.|.+.+|+..+...+     ..++-+|..+.+|+-+.++   .+++|.
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg---llKLWk  507 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG---LLKLWK  507 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc---hhhhcC
Confidence            8889999999999999999999999999988776444     4567788888888877776   455553

>KOG0292|consensus

Probab=100.00  E-value=4.4e-34  Score=251.15  Aligned_cols=266  Identities=19%  Similarity=0.264  Sum_probs=235.5

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      ....+|..++|+|.  ...++++-.+|.|++||.+-+     +..|.++|..++|+|++.+ ++|+.|..|+||+.++.+
T Consensus         7 skSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             cccccccceecCCC--CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            45678999999999  999999999999999999887     8899999999999999988 999999999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ++.++.+|-..|+.+.|++....|+++|.|-+|++|+..+++++..+.+|...|+|..|+|....+++++-   |.+|++
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL---DQTVRV  161 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL---DQTVRV  161 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---cceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             EEccCCc-----------------------------eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE-
Q psy519          163 WSITDGA-----------------------------SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV-  212 (351)
Q Consensus       163 ~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  212 (351)
                      ||+..-+                             ....+.+|...|.-++|+|.-..+++|+.|..|++|.+...+. 
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            9984210                             1234568999999999999999999999999999999865432 


Q ss_pred             -EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccc
Q psy519          213 -ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       213 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                       +.+. ..|..+|.++-|+|..+++++.++|+.|++||+...+.++.     .+..-++.+|..+.++.+-.+|
T Consensus       242 EvDtc-rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  242 EVDTC-RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             eehhh-hcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence             2222 25678999999999999999999999999999998877765     3555678888888777655554

>KOG0283|consensus

Probab=100.00  E-value=3.6e-34  Score=251.15  Aligned_cols=242  Identities=21%  Similarity=0.283  Sum_probs=208.8

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCC--------------------------------c--------
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY--------------------------------Y--------   45 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~--------------------------------~--------   45 (351)
                      ++..|.+.|.++.||+|  |+|||+|+.|+.|+||.+..                                .        
T Consensus       262 ~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             cccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            34589999999999999  99999999999999999877                                1        


Q ss_pred             -------------------------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEe
Q psy519           46 -------------------------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH  100 (351)
Q Consensus        46 -------------------------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~  100 (351)
                                               +.+|.+.|.++.|+.++.+++++.|.+|++|++...+++..| .|...|+|++|+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn  418 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN  418 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence                                     789999999999999999999999999999999999999988 599999999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc---
Q psy519          101 P-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD---  176 (351)
Q Consensus       101 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~---  176 (351)
                      | |.+++++|+.||.++||++...+.+.-.. ...-|++++|.|+|+..++|+.   +|.+++|+....+......-   
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~---~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF---NGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe---ccEEEEEEccCCeEEEeeeEeec
Confidence            9 88999999999999999998776555443 4588999999999999999999   99999999887665544321   


Q ss_pred             -----CCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          177 -----HVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       177 -----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                           ....|+.+.|.| +...+++.+.|..|+|||.++...+..++..+. ..-....|+.||++|+++++|..|++|+
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence                 123799999998 445688888999999999988888888764443 3446788999999999999999999999


Q ss_pred             CCCCc
Q psy519          250 WPSAS  254 (351)
Q Consensus       250 ~~~~~  254 (351)
                      .....
T Consensus       575 ~~~~~  579 (712)
T KOG0283|consen  575 NDSFN  579 (712)
T ss_pred             CCCCc
Confidence            85443

>KOG0293|consensus

Probab=100.00  E-value=3.4e-34  Score=232.02  Aligned_cols=275  Identities=16%  Similarity=0.208  Sum_probs=228.5

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ++...|...|.-+.||++  |++||+++.|.+..+|.+...        +.+|..+|..+.|+||.++ ++|+.+..+++
T Consensus       218 qil~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhHhhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            456789999999999999  999999999999999988665        7799999999999999988 99999999999


Q ss_pred             EeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCeEEEEEccCCCEEEEEec
Q psy519           76 WSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      ||+.+|.....+. ++...+.+.+|.|||..+++|+.|+.+..||+.. +.....++- ...|.+++.++||+++++.+.
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999999877764 3467899999999999999999999999999874 334444332 356899999999999999988


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--CCEEEEEEcC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--EPVTSLVWSV  231 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~  231 (351)
                         |..|++|+..+....... ....+|++++.+.|++++++.-.+..+.+||++....+.++. .|.  .-+-.-||--
T Consensus       375 ---d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  375 ---DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGG  449 (519)
T ss_pred             ---ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCC
Confidence               999999998776555444 345689999999999999999999999999999877777664 333  2344445544


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCce-eeeeeccceeeEEEeeec
Q psy519          232 -TGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFE-AATLAANSRVRTLREMHE  290 (351)
Q Consensus       232 -~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~  290 (351)
                       +..++++|++|+.|+||+..+++++..     ..++.++|+|.... +|.++.|+   ++|+|..
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg---tIRIWg~  512 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG---TIRIWGP  512 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC---eEEEecC
Confidence             558999999999999999999999865     66778999998765 66666666   5666653

>KOG0645|consensus

Probab=100.00  E-value=1.5e-33  Score=216.50  Aligned_cols=236  Identities=22%  Similarity=0.351  Sum_probs=204.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .|..+|+..|.+++|+|.  |++||+++.|.++.||.-...       +.+|.+.|.+++|+++|.+ ++++.|+.|.||
T Consensus        55 vld~~hkrsVRsvAwsp~--g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW  132 (312)
T KOG0645|consen   55 VLDDGHKRSVRSVAWSPH--GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW  132 (312)
T ss_pred             eccccchheeeeeeecCC--CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence            466789999999999999  999999999999999987755       8899999999999999998 999999999999


Q ss_pred             eCCCC---eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           77 SLEQM---YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT---DGASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      .+...   ++...++.|...|..+.|+|...+|++++.|.+|++|+-.   .-.+++++.+|...|.+++|+|.|..|++
T Consensus       133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s  212 (312)
T KOG0645|consen  133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS  212 (312)
T ss_pred             EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence            98743   5678889999999999999999999999999999999876   23578899999999999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC------cEEEEeeccCCCCE
Q psy519          151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG------RVISRFHLQEHEPV  224 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v  224 (351)
                      ++.   |++++||-+.+.-    -..|..+++.+.|.  ...|++++.|+.|++|.-...      +.+......|...|
T Consensus       213 ~sd---D~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV  283 (312)
T KOG0645|consen  213 CSD---DGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV  283 (312)
T ss_pred             ecC---CcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence            999   9999999876321    12467889999998  557999999999999976543      12222334566789


Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q psy519          225 TSLVWSVT-GETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       225 ~~~~~~~~-~~~l~~~~~dg~i~i~~~~  251 (351)
                      +++.|+|. .++|++|+.||.|++|.+.
T Consensus       284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  284 NSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999995 7789999999999999875

>KOG0278|consensus

Probab=100.00  E-value=8.1e-35  Score=221.12  Aligned_cols=278  Identities=22%  Similarity=0.286  Sum_probs=244.8

Q ss_pred             cCCCCccceEEeeecCC-ccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            6 LNHGDHKHFIQNSFKPE-TVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~-~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ..+||..+|..++|||- ..|-+|++++.|+.-.+-+-+++     +.+|.+.|++...+.+... ++++.|-+-+|||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            46899999999999972 12889999999999888877777     8899999999999988877 89999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      -+|..+..+ .|+.-|..++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|+.+.|....+.+++...   |
T Consensus        89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad---d  164 (334)
T KOG0278|consen   89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD---D  164 (334)
T ss_pred             hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc---C
Confidence            999999888 588899999999999999999999999999998754 56778899999999999998888888877   9


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      +.|++||.+++..++.+. ...+|.++.++++|+++.++. .+.|.+||..+-..++.+..  ...|.+..++|+..+++
T Consensus       165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~--P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM--PCNVESASLHPKKEFFV  240 (334)
T ss_pred             CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC--ccccccccccCCCceEE
Confidence            999999999999999885 467899999999999887775 46799999999998888754  45789999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeee------eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          238 TGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      +|++|..++.||..++..+..      .+++++.|+|+|...+.++.||   ++++|.+..++
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG---TirlWQt~~~~  300 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG---TIRLWQTTPGK  300 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc---eEEEEEecCCC
Confidence            999999999999999987754      6889999999999988888887   66777765554

>KOG0310|consensus

Probab=100.00  E-value=1.2e-33  Score=233.40  Aligned_cols=269  Identities=24%  Similarity=0.307  Sum_probs=229.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      -...|.+++|||.+..++.+++  .-.+.+|+....     +......+.++.|-.||++ ++|...|.|+|+|.++...
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec--ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence            3578999999998333444443  457899998776     5566788999999999999 8888999999999888777


Q ss_pred             eEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCC-CEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~d~~i~  161 (351)
                      ++.+.+|+.++....|+|++ ..+++|+.|+.+++||+.+......+.+|++.|+|.+|+|.. ..+++|+.   ||.|+
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY---Dg~vr  179 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY---DGKVR  179 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC---CceEE
Confidence            88899999999999999954 567788888999999999888766889999999999999954 47888888   99999


Q ss_pred             EEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          162 LWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       162 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      +||++.. ..+.++ .|..+|..+.+-|.|..+++++. ..+++||+.+|.........|+..|+|+++..++..|++|+
T Consensus       180 l~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  180 LWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             EEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence            9999987 556666 68999999999999999999875 57999999977665555456889999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEE
Q psy519          241 LTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       241 ~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      .|+.+++||+.+.+.++.    .++.+++++|++..++.+.++|.+..-
T Consensus       258 LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            999999999988888876    677789999999999999999976543

>KOG0281|consensus

Probab=100.00  E-value=6.3e-35  Score=231.62  Aligned_cols=230  Identities=20%  Similarity=0.397  Sum_probs=205.6

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ....|.|+.+.    .+.+++|..|.+|++||.+..     +.+|++.|.|+.|... .+++|+.|.+|+|||+++++++
T Consensus       196 ~skgVYClQYD----D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYD----DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEec----chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchh
Confidence            45788999987    568999999999999999887     8899999999999643 3499999999999999999999


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      .++.+|.+.|..+.|+  ..++++++.|.++.+||+....   ..+.+.+|...|..+.|+  .+++++++.   |.+|+
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg---DRTik  343 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG---DRTIK  343 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---CceEE
Confidence            9999999999999998  4589999999999999998754   345567899999999995  569999988   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +|++.+++.++++.+|...|.++.+  .++++++|+.|.+|++||+..|.++..++ .|+.-|.++.|  |.+.+++|+.
T Consensus       344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaY  418 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAY  418 (499)
T ss_pred             EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccc
Confidence            9999999999999999999999888  48999999999999999999999998876 67788999999  4678999999


Q ss_pred             CCeEEEEeCCCCcee
Q psy519          242 TGTVQFYGWPSASKI  256 (351)
Q Consensus       242 dg~i~i~~~~~~~~~  256 (351)
                      ||+|++||+..+...
T Consensus       419 DGkikvWdl~aaldp  433 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDP  433 (499)
T ss_pred             cceEEEEecccccCC
Confidence            999999999876544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-32  Score=231.24  Aligned_cols=237  Identities=32%  Similarity=0.511  Sum_probs=216.0

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...|...+..+.|+|+  +++|++++.++.+++|++...     ...|...+.++.|++++.+ ++++.++.+++||+.+
T Consensus        47 ~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200          47 LKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             EecCCcceeEEEECCC--CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            4567888899999999  999999999999999999874     5678889999999999888 5566699999999998


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ++....+..|...+.+++|+|++.++++++.++.+++||+++++....+..+...+.+++|+|+++.+++++.   ++.+
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i  201 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTI  201 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC---CCcE
Confidence            8888888889999999999999889988888999999999998888888888889999999999999999988   9999


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ++||++.++.+..+..|...+.++.|+|++.++++++.+|.+++||+.+++....+. .+...+.+++|+|++++|++++
T Consensus       202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEec
Confidence            999999988888888888899999999998899988889999999999888888776 5667899999999999999999


Q ss_pred             CCCeEEEEe
Q psy519          241 LTGTVQFYG  249 (351)
Q Consensus       241 ~dg~i~i~~  249 (351)
                      .||.+++|+
T Consensus       281 ~d~~i~iw~  289 (289)
T cd00200         281 ADGTIRIWD  289 (289)
T ss_pred             CCCeEEecC
Confidence            999999996

>KOG1446|consensus

Probab=100.00  E-value=5.9e-32  Score=212.39  Aligned_cols=266  Identities=20%  Similarity=0.230  Sum_probs=219.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeC--CCcEEEEe
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSR--DTTARLWS   77 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~--d~~i~vw~   77 (351)
                      ........|.++.|+++  |.+|++++.|..+++||...+     ...+...+..+.|...... +.++.  |.+|+..+
T Consensus         9 ~f~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            33445689999999999  999999999999999999887     4445567777888765544 55554  88999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +.+.+.++.|.+|...|..++.+|-+..+++++.|++|++||++..++...+.....+  .++|+|+|-++|++..   .
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~---~  161 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG---S  161 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC---C
Confidence            9999999999999999999999998899999999999999999988887777544444  4889999999999987   6


Q ss_pred             CeEEEEEccCC--ceeEEec---cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC--CEEEEEEc
Q psy519          158 KAVRLWSITDG--ASVRVFS---DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE--PVTSLVWS  230 (351)
Q Consensus       158 ~~i~i~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~  230 (351)
                      ..|++||+|.-  .+...+.   +.......+.|+|||++|+.++..+.+++.|.-+|.....+......  -....+|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            69999999974  2333332   34667899999999999999999999999999999988888654432  23678999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEecCCceeeeeec
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~  278 (351)
                      ||++++++|+.||+|.+|++++++.+..      .++..+.|+|.-..++++++
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            9999999999999999999999988865      34456778887666655544

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.1e-32  Score=240.90  Aligned_cols=243  Identities=16%  Similarity=0.198  Sum_probs=196.7

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc------------------cCCCccceEEEEECC-CCcE-EEEeCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------------TSGHDMTVWSVEACS-KGLA-LTGSRD   70 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------------~~~~~~~i~~~~~~~-~~~~-~~~~~d   70 (351)
                      -..|.....+++  +..+++++.+.....|+...+                  +.+|.+.|++++|+| ++.+ ++++.|
T Consensus        20 ~~~i~~~~~~~d--~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         20 FLNVTPSTALWD--CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             eeccccccccCC--CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            344555566666  666666666555555554322                  567999999999999 6665 999999


Q ss_pred             CcEEEEeCCCC-------eeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc
Q psy519           71 TTARLWSLEQM-------YPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        71 ~~i~vw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  142 (351)
                      ++|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            99999999764       3466788999999999999975 699999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC-EEEEEECCCCcEEEEEc----CCCeEEEEEcCCCcE-EEEe
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP-VLSIAFSPCGKYLASGG----EDGLVLTHELTTGRV-ISRF  216 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~  216 (351)
                      |++.+|++++.   |+.|++||+++++.+..+..|.+. ...+.|.+++..+++++    .|+.|++||+++... ....
T Consensus       178 pdG~lLatgs~---Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~  254 (493)
T PTZ00421        178 LDGSLLCTTSK---DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV  254 (493)
T ss_pred             CCCCEEEEecC---CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence            99999999998   999999999999998888888764 45678999877777654    478999999987643 3333


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeee
Q psy519          217 HLQEHEPVTSLVWSVTGETLVTGS-LTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       217 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~  258 (351)
                      .......+....|++++++|++++ .|+.|++||+.+++....
T Consensus       255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            333334566778999999998887 499999999999887654

>KOG0282|consensus

Probab=100.00  E-value=7.5e-35  Score=240.13  Aligned_cols=275  Identities=21%  Similarity=0.309  Sum_probs=233.7

Q ss_pred             cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCC-CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy519           46 TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQ-MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD  122 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  122 (351)
                      +.+|...|.++.|.| .+.+ ++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.+++||+++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            789999999999999 6777 9999999999999976 889999999999999999999999999999999999999999


Q ss_pred             CceeEEeccCCCCeEEEEEccCC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCe
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      |+++..+. ....++|+.|+|++ +.+++|+.   |+.|+.||+|+++.++++..|-+.|..+.|-++|+++++.+.|+.
T Consensus       290 G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~s---d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  290 GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGS---DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             ceEEEEEe-cCCCceeeecCCCCCcEEEEecC---CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            99999987 46778999999988 78888888   999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee----------eeecceeEEecCCc
Q psy519          202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG----------IGVYPRCAAQPVGF  271 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~----------~~~~~~~~~s~~~~  271 (351)
                      ++||+.+.+..++.+.........++..+|++++++.-+.|+.|.+|.+...-+..          .+....+.|||||.
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            99999998877776654444678899999999999999999999999976443221          14445789999999


Q ss_pred             eeeeeeccceeeEEE-----eeeceeCceEEEeeEEEEecCCceeeccEEEecCCccccc
Q psy519          272 EAATLAANSRVRTLR-----EMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      +++++.++|.+.+|.     +......+......  +.+.|-.......-.++..|+.|+
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~--v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG--VDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEE--EEecCCCcceeEecccCceeEecC
Confidence            999999999877654     22223333233333  678887665555556888888885

>KOG0319|consensus

Probab=100.00  E-value=2.9e-33  Score=241.63  Aligned_cols=274  Identities=22%  Similarity=0.289  Sum_probs=238.5

Q ss_pred             CCCCccceEEeeec-CCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFK-PETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~s-p~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..|....|..+.|- |+  .++||.++..+.+++|++.+.    ..+|...|.++....+|.+ ++|+.|.++++|.+++
T Consensus       319 ivG~ndEI~Dm~~lG~e--~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPE--ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             hcCCchhheeeeecCCc--cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            35677888888775 55  789999999999999998887    8899999999996667755 9999999999998854


Q ss_pred             Ce----eeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce-----eE----EeccCCCCeEEEEEccCCC
Q psy519           81 MY----PLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGAS-----VR----VFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        81 ~~----~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~----~~~~~~~~i~~~~~~~~~~  146 (351)
                      +.    ++....+|...|.+++++..+ .+|++++.|+++++|++...+.     ..    ....|...|.|++.+|+..
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk  476 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK  476 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence            43    345567999999999997744 5899999999999999976221     11    2246899999999999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEE
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS  226 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  226 (351)
                      ++++|+.   |++.+||++.+......+.+|...+.++.|+|..+.++++|.|++|+||.+.+..+++++. .|...|..
T Consensus       477 LiAT~Sq---DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlr  552 (775)
T KOG0319|consen  477 LIATGSQ---DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLR  552 (775)
T ss_pred             eEEeccc---ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-CccceeEe
Confidence            9999999   9999999999999999999999999999999999999999999999999999999999996 67889999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +.|-.+++.|++++.||.+++|+++++.....     ..+..++.+|....+++++.|+.   +-+|.
T Consensus       553 a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~---i~~wk  617 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR---IIFWK  617 (775)
T ss_pred             eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE---EEEee
Confidence            99999999999999999999999999988754     66778899999998888888875   44554

>KOG0973|consensus

Probab=100.00  E-value=1.3e-32  Score=247.40  Aligned_cols=284  Identities=19%  Similarity=0.272  Sum_probs=242.7

Q ss_pred             CCCccceEEeeecCCccccEEEEec--CCCceEEEecCCc-----------------cCCCccceEEEEECCCCcE-EEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLE--SQKNLQSRYLPYY-----------------TSGHDMTVWSVEACSKGLA-LTG   67 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~--~~~~i~i~~~~~~-----------------~~~~~~~i~~~~~~~~~~~-~~~   67 (351)
                      .++...|.+++.+|+  |..+|+|+  .|+.+.+|+.+..                 ...|.+.|+|+.|+|||++ ++|
T Consensus        10 ~H~~~~IfSIdv~pd--g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPD--GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccCCeeEEEEEecCC--ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            345677999999999  99999999  8999999997664                 5578999999999999998 999


Q ss_pred             eCCCcEEEEeCCC------------------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           68 SRDTTARLWSLEQ------------------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        68 ~~d~~i~vw~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      +.|+.|.||+...                  .+.+..+.+|...|..++|+|++.++++++.|++|.+|+..+.+.+..+
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            9999999998762                  2466788899999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC------CCCEEEEEECCCCcEEEEEcC----C
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH------VSPVLSIAFSPCGKYLASGGE----D  199 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d  199 (351)
                      .+|.+.|..+.|+|-|++||+-+.   |++|++|.+.+....+.+..+      ...+..+.|+|||++|++...    -
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsd---Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSD---DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             ecccccccceEECCccCeeeeecC---CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            999999999999999999999888   999999997776555555432      345789999999999998643    3


Q ss_pred             CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC-----CC------------EEEEEeCCCeEEEEeCCCCceeee----
Q psy519          200 GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT-----GE------------TLVTGSLTGTVQFYGWPSASKIGI----  258 (351)
Q Consensus       200 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~i~~~~~~~~~~~----  258 (351)
                      ..+.|.+..+.+.-..+. .|..++..+.|+|.     .+            .+|+|+.|++|.||.....+++..    
T Consensus       245 ~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l  323 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL  323 (942)
T ss_pred             ceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh
Confidence            468888877666666664 77889999999982     11            678899999999999977776643    


Q ss_pred             --eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          259 --GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                        ..+..++|+|||..|.+.+.||++..+++-..+-|....
T Consensus       324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS  364 (942)
T ss_pred             hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence              678899999999999999999999999987766666443

>KOG0277|consensus

Probab=100.00  E-value=1.3e-33  Score=214.95  Aligned_cols=235  Identities=23%  Similarity=0.290  Sum_probs=204.5

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|+++. ...+++++.||++++||+...      ++.|..+|.++.|++..+.  ++++.|++|++|+....+.
T Consensus        61 D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   61 DGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             cceeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            567889999973 677888899999999997665      7899999999999987644  8899999999999999999


Q ss_pred             eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~  161 (351)
                      +.++.+|...|...+|+| ..+.+++++.|+.+++||++.......+..|...+.|+.|+. +.+.+++|+.   |+.|+
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr  216 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV---DNLVR  216 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC---CceEE
Confidence            999999999999999999 578999999999999999987665666888999999999998 6678889888   99999


Q ss_pred             EEEccCC-ceeEEeccCCCCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-CCCEEEE
Q psy519          162 LWSITDG-ASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-TGETLVT  238 (351)
Q Consensus       162 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  238 (351)
                      .||+++- .++..+.+|.-.|+.++|+|. ...|++++.|-+++|||...+.........|..-+..+.|++ ++.++|+
T Consensus       217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence            9999985 567788899999999999994 468999999999999999865544433335667789999998 5678999


Q ss_pred             EeCCCeEEEEeC
Q psy519          239 GSLTGTVQFYGW  250 (351)
Q Consensus       239 ~~~dg~i~i~~~  250 (351)
                      .+.|+.++||+-
T Consensus       297 ~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  297 TGWDELLYVWNP  308 (311)
T ss_pred             cccccceeeecc
Confidence            999999999983

>KOG0296|consensus

Probab=100.00  E-value=3.3e-32  Score=217.27  Aligned_cols=240  Identities=17%  Similarity=0.233  Sum_probs=204.8

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      .....+|+..|+++.||.+  |.+||+|+.+|.|+||...++     +...-+.+--+.|+|.+.+ +.|+.||.+..|.
T Consensus        99 ~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             eeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence            4456899999999999999  999999999999999999987     3334566777899999988 9999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc--------------------------
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD--------------------------  131 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------  131 (351)
                      +.++...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.+++++..+..                          
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            999888889999999999999999999999999999999999999887665541                          


Q ss_pred             -------------------------CCCCeEEEEEcc---CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          132 -------------------------HVSPVLSIAFSP---CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       132 -------------------------~~~~i~~~~~~~---~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                                               +...+.|+.+.|   .-.+.|+|+.   ||+|.|||+...+....+ .|..+|..
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v---dG~i~iyD~a~~~~R~~c-~he~~V~~  332 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV---DGTIAIYDLAASTLRHIC-EHEDGVTK  332 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc---cceEEEEecccchhheec-cCCCceEE
Confidence                                     001111222222   2245566666   999999999888777666 58888999


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +.|-+ ..+|++++.+|.|+.||.++|+....+. .|...|..++++|+.+++++++.|++.+||+++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99998 7899999999999999999999999886 678899999999999999999999999999875

>KOG0305|consensus

Probab=100.00  E-value=1.5e-32  Score=234.83  Aligned_cols=263  Identities=24%  Similarity=0.326  Sum_probs=229.7

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeC-
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVG-   89 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~-   89 (351)
                      ++|+..   +.||.| ....|++|+....     ...+.+.|+++.|+++|.+ ++|..+|.|.|||.++.+.+..+.+ 
T Consensus       183 ldWss~---n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  183 LDWSSA---NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hhcccC---CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            577743   566665 4457999999887     2233899999999999988 9999999999999999999999988 


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC
Q psy519           90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus        90 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      |...|.+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|++++|+|+.   |+.+.|||....
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn---DN~~~Iwd~~~~  333 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN---DNVVFIWDGLSP  333 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC---ccceEeccCCCc
Confidence            99999999998  67899999999999999998776555 8889999999999999999999999   999999999888


Q ss_pred             ceeEEeccCCCCEEEEEECC-CCcEEEEEc--CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE--EeCCC
Q psy519          169 ASVRVFSDHVSPVLSIAFSP-CGKYLASGG--EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT--GSLTG  243 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg  243 (351)
                      .++..+..|...|.+++|+| ...+||+|+  .|++|++||..++..+..+  .....|.+|.|++..+.|++  |..++
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCC
Confidence            89999999999999999999 667888875  5999999999999998876  45689999999999876666  44578


Q ss_pred             eEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          244 TVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       244 ~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      .|.||++++.+++..     ..+..+++||||..+++++.|.+++.|.+|+.
T Consensus       412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            999999999877754     56778999999999999999998888888775

>KOG0288|consensus

Probab=100.00  E-value=1.7e-33  Score=227.88  Aligned_cols=269  Identities=21%  Similarity=0.259  Sum_probs=234.3

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      .+.|.+.+..+.|-++  .+.|++|+.|..|++|+....       +.+..+.|+.+.|.++++. ++++.|+.+++|++
T Consensus       171 ld~h~gev~~v~~l~~--sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRN--SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             hhccccccceeEEccC--cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            4678999999999999  999999999999999998876       6677788999999999988 99999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      ...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.++.. ..+.+..++.+  ...+++|-.   |+
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~---Dk  322 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF---DK  322 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc---cc
Confidence            9999999999999999999998877779999999999999999988777664 34556667665  456677666   99


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC---CCEEEEEEcCCCCE
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH---EPVTSLVWSVTGET  235 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~  235 (351)
                      .|++||.++..+......+. .|+++..++++..+++++.|..+.+.|+++.+....+.....   ...+.+.|||++.|
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY  401 (459)
T ss_pred             ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence            99999999999999887654 899999999999999999999999999999988877753322   46899999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCCceeeeeeccceeeE
Q psy519          236 LVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      +++|+.||.|+||++.+++....       ..+.+++|+|.|..++.+..+..+..
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence            99999999999999999987754       25788999999999888777665443

>KOG0316|consensus

Probab=100.00  E-value=3.3e-32  Score=205.19  Aligned_cols=234  Identities=23%  Similarity=0.339  Sum_probs=207.5

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +..++++|..+.|+-+|++ ++++.|.+|++|++..+..++++.+|...|..++.+.|...+++++.|..+.+||+.+|+
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            4578999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC--ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  202 (351)
                      ..+.+.+|.+.|..++|+.+...+++|+.   |..+++||.|+.  ++++.+......|.++..+  +..+++|+.||.+
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~Sgsf---D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv  167 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSF---DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV  167 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccc---cceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence            99999999999999999999999999998   999999999875  6788887788889999886  6789999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCCceeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~  275 (351)
                      +.||++.|+...-+   -..+|++++|+++++..++++.|+++++.|-.+|+.++.       ..-..+.++......+.
T Consensus       168 RtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s  244 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS  244 (307)
T ss_pred             EEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence            99999999876543   346899999999999999999999999999999988764       22235677777777777


Q ss_pred             eeccceeeEEEe
Q psy519          276 LAANSRVRTLRE  287 (351)
Q Consensus       276 ~~~~~~~~~~~~  287 (351)
                      ++.+|.+..|.+
T Consensus       245 gSEDG~Vy~wdL  256 (307)
T KOG0316|consen  245 GSEDGKVYFWDL  256 (307)
T ss_pred             ccCCceEEEEEe
Confidence            877775554443

>KOG0306|consensus

Probab=100.00  E-value=1.7e-31  Score=231.17  Aligned_cols=311  Identities=18%  Similarity=0.257  Sum_probs=266.9

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...||...|+++.|+..  |.+|++|+.|+.|.+||+-..     +.+|...|+.+-|..+..+ ++.+.|+.|++||++
T Consensus       102 tfngHK~AVt~l~fd~~--G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~  179 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDKI--GTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE  179 (888)
T ss_pred             eecccccceEEEEEccc--CceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence            45789999999999999  999999999999999999776     8899999999999986666 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------------------------------------
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG------------------------------------  123 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------------------------------------  123 (351)
                      +..+..+...|...++++++.+  +.+++++.|+.+++|++...                                    
T Consensus       180 tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r  257 (888)
T KOG0306|consen  180 TQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR  257 (888)
T ss_pred             cceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence            9999999999999999999987  68889999999999998100                                    


Q ss_pred             ----------------------------------------------------------------------------ce--
Q psy519          124 ----------------------------------------------------------------------------AS--  125 (351)
Q Consensus       124 ----------------------------------------------------------------------------~~--  125 (351)
                                                                                                  ..  
T Consensus       258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~  337 (888)
T KOG0306|consen  258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT  337 (888)
T ss_pred             EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence                                                                                        00  


Q ss_pred             ----------------------------eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC
Q psy519          126 ----------------------------VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH  177 (351)
Q Consensus       126 ----------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  177 (351)
                                                  ...+.+|...|++++++.+...+++++    .+.+++|+..+.++++++...
T Consensus       338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga----~~SikiWn~~t~kciRTi~~~  413 (888)
T KOG0306|consen  338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA----GESIKIWNRDTLKCIRTITCG  413 (888)
T ss_pred             EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC----CCcEEEEEccCcceeEEeccc
Confidence                                        011225777889999998887777775    789999999999999998653


Q ss_pred             CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----
Q psy519          178 VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS-----  252 (351)
Q Consensus       178 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~-----  252 (351)
                        .+.+..|.|.++++++|...|.+.+||+.+...+.++. .|.+.+.+++.+||++.+++|+.|.+|++||..-     
T Consensus       414 --y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  414 --YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             --cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence              78899999999999999999999999999998888876 7889999999999999999999999999999742     


Q ss_pred             Cce---ee---------eeecceeEEecCCceeeeeeccceeeEE-----EeeeceeCceEEEeeEEEEecCCceeeccE
Q psy519          253 ASK---IG---------IGVYPRCAAQPVGFEAATLAANSRVRTL-----REMHEIVGPVVVVESFIVEIRPDKWYEANL  315 (351)
Q Consensus       253 ~~~---~~---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      +..   +.         ...+.++.+||||++++++--+.+++++     +++=..-||-..+.+  +.++||.....++
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s--mDIS~DSklivTg  568 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS--MDISPDSKLIVTG  568 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE--EeccCCcCeEEec
Confidence            111   11         1456789999999999999999998865     455567899999999  8899999877666


Q ss_pred             EEecCCccccceeee
Q psy519          316 IVLDDDLKECNLETY  330 (351)
Q Consensus       316 ~~~~~~i~~~~~~~~  330 (351)
                       ..|.++++|.+..+
T Consensus       569 -SADKnVKiWGLdFG  582 (888)
T KOG0306|consen  569 -SADKNVKIWGLDFG  582 (888)
T ss_pred             -cCCCceEEeccccc
Confidence             67899999998654

>KOG0289|consensus

Probab=100.00  E-value=2.8e-31  Score=216.42  Aligned_cols=267  Identities=23%  Similarity=0.277  Sum_probs=233.1

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      ....+.++...|.  .+.+.+|+.|..+.++|.+.+     +.||...|+.+.|+++... ++++.|..|+||.......
T Consensus       218 ~~pgi~ald~~~s--~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  218 STPGITALDIIPS--SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCCCeeEEeecCC--CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            3467888999988  889999999999999999888     8999999999999999877 9999999999999988877


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc--CCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ......|..+|+.+..+|.|.||++++.|++..+.|++++..+.....  ..-.+++.+|+|||.+|.+|..   |+.++
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---d~~vk  372 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---DGVVK  372 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC---CceEE
Confidence            778889999999999999999999999999999999999998877654  2345899999999999999998   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +||+.++.....|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+..+++......++.++.|.+.|.+|+.++.
T Consensus       373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc
Confidence            99999999999999999999999999999999999999999999999998888888777778999999999999999988


Q ss_pred             CCeEEEEeCCCCc--eeee-----eecceeEEecCCceeeeeeccce
Q psy519          242 TGTVQFYGWPSAS--KIGI-----GVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       242 dg~i~i~~~~~~~--~~~~-----~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      |=+|++++-.+.+  .+..     +....+.|....++++.++.+..
T Consensus       453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  453 DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             eeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence            7777777644332  2222     34455677777777766665543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.7e-31  Score=249.34  Aligned_cols=235  Identities=19%  Similarity=0.328  Sum_probs=201.8

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      +...+.+++|+|.. +.+|++++.||.|++||+...     +.+|...|++++|+| ++.+ ++|+.|++|++||+.+++
T Consensus       531 ~~~~v~~l~~~~~~-~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        531 SRSKLSGICWNSYI-KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             ccCceeeEEeccCC-CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            34678899998741 688999999999999999876     678999999999996 6665 999999999999999998


Q ss_pred             eeEEeeCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           83 PLRIFVGHKQDVTCARFH-PKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      .+..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.++++++.   |+.|
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~---D~~i  684 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST---DNTL  684 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC---CCEE
Confidence            88888654 678999995 478999999999999999998765 466778899999999997 6789999998   9999


Q ss_pred             EEEEccCC------ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec------------cCCC
Q psy519          161 RLWSITDG------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL------------QEHE  222 (351)
Q Consensus       161 ~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~  222 (351)
                      ++||++.+      ..+..+.+|...+..++|+|++.+|++|+.|+.|++|+......+..+..            .+..
T Consensus       685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  764 (793)
T PLN00181        685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ  764 (793)
T ss_pred             EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc
Confidence            99999743      56778889999999999999999999999999999999876654433221            1234


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      .|.+++|+|++..|++|+.||.|++|++
T Consensus       765 ~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        765 FISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            6999999999999999999999999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.6e-31  Score=232.94  Aligned_cols=244  Identities=17%  Similarity=0.209  Sum_probs=196.1

Q ss_pred             cCCCCccceEEeeecC-CccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCC-cE-EEEeCC
Q psy519            6 LNHGDHKHFIQNSFKP-ETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKG-LA-LTGSRD   70 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~-~~-~~~~~d   70 (351)
                      +..+|...|.+++|+| +  +++|++++.|++|++|++...            +.+|...|.+++|+|++ .+ ++++.|
T Consensus        70 ~l~GH~~~V~~v~fsP~d--~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFD--PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             eEeCCCCCEEEEEEcCCC--CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            3568999999999999 7  889999999999999998642            56899999999999985 44 999999


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCC-eEEEEEccCCCEEE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP-VLSIAFSPCGKYLA  149 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~  149 (351)
                      ++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..++
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            99999999999999899999999999999999999999999999999999999998888888754 45678999888877


Q ss_pred             EEec-CCCCCeEEEEEccCCc-eeEEeccC-CCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          150 SGGT-GSYDKAVRLWSITDGA-SVRVFSDH-VSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       150 ~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +++. .+.|+.|++||+++.. .......+ ...+....|+++++++++++ .|+.|++||+.+++...........+..
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence            6652 2347999999998764 33333322 34556678899999998887 5999999999999887766555556788


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          226 SLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .++|.|.-..=+-  .--..++|.+...
T Consensus       308 g~~~~pk~~~dv~--~~Ei~r~~~l~~~  333 (493)
T PTZ00421        308 GLCMMPKWSLDTR--KCEIARFYALTYH  333 (493)
T ss_pred             ceEeccccccccc--ceeeeEEEEecCC
Confidence            9999885321111  1123466666544

>KOG0281|consensus

Probab=100.00  E-value=5.1e-33  Score=220.82  Aligned_cols=235  Identities=22%  Similarity=0.362  Sum_probs=206.4

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      ++..||++.|.|+.|.    .+.|++|++|.+|++||++++     +.+|...|..+.|+ +|..++++.|.++.|||+.
T Consensus       231 ~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             HhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEecc
Confidence            5678999999999997    679999999999999999998     77899999999996 4666999999999999998


Q ss_pred             CCe---eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           80 QMY---PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        80 ~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      ...   ..+.+.+|...|+.+.|+  .+++++++.|.+|++|++.+.+.++++.+|...|.|+.+  .++++++|+.   
T Consensus       306 sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS---  378 (499)
T KOG0281|consen  306 SPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS---  378 (499)
T ss_pred             CchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC---
Confidence            654   335667999999999996  569999999999999999999999999999999999988  6899999998   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE--------eeccCCCCEEEEE
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR--------FHLQEHEPVTSLV  228 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~v~~~~  228 (351)
                      |.+|++||+..|.+++.+++|+.-|+++.|  |.+.+++|..||.|++||+..+.....        ....|.+.|..+.
T Consensus       379 DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ  456 (499)
T KOG0281|consen  379 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ  456 (499)
T ss_pred             CceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence            999999999999999999999999999999  478899999999999999987643311        1124557899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      |  |...+++++.|.+|.+||+.++..
T Consensus       457 F--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  457 F--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             e--cceEEEeccCCCeEEEEEcCCCCc
Confidence            8  466788999999999999987643

>KOG0647|consensus

Probab=100.00  E-value=3.2e-31  Score=206.69  Aligned_cols=267  Identities=17%  Similarity=0.217  Sum_probs=215.5

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .+..+-...|.+++|||. ...++++++-|++||+|+++..       ...|.++|.+++|+.+|.. ++|+.|+.+++|
T Consensus        21 ev~~pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             ecCCCcccchheeEeccc-cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            345566788999999994 1667779999999999999884       6679999999999999977 999999999999


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKIT--YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      |+.+++ +..+..|..+|..+.|-+...  .|++|+.|++|++||.+...++.++. .+..++++..  ....++++.. 
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata-  174 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATA-  174 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEec-
Confidence            999995 556778999999999987554  89999999999999999999888886 4567777765  3456777777 


Q ss_pred             CCCCeEEEEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE--EEeeccC--------CC
Q psy519          155 SYDKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI--SRFHLQE--------HE  222 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--------~~  222 (351)
                        ++.|.+|+++++.....  .....-.+++++..+|....+.|+-+|.+.+..+..+...  ..|+-+.        --
T Consensus       175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY  252 (347)
T KOG0647|consen  175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY  252 (347)
T ss_pred             --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence              99999999987632211  1123446789999888888899999999999988876322  2232111        12


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeecc
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~  279 (351)
                      .|++++|+|....|++++.||++.+||-....++..     .+++.+.|+.+|..++++..-
T Consensus       253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             EecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence            478899999999999999999999999887766654     788899999999998887654

>KOG0299|consensus

Probab=100.00  E-value=8.6e-31  Score=215.04  Aligned_cols=264  Identities=21%  Similarity=0.333  Sum_probs=232.0

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------------------c-CCCccceEEEEECCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------------------T-SGHDMTVWSVEACSKG   62 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------------------~-~~~~~~i~~~~~~~~~   62 (351)
                      ....|.-++.+++++|+  .++.++++.+++|.-|+..++                      . .+|...+.+++.++||
T Consensus       137 ~~~~H~~s~~~vals~d--~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPD--DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             eeccccCcceEEEeecc--ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            44678999999999999  999999999999999988766                      1 2788899999999999


Q ss_pred             cE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEE
Q psy519           63 LA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF  141 (351)
Q Consensus        63 ~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  141 (351)
                      ++ ++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++....+.++.+|++.|.++.-
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            99 99999999999999999999999999999999999988889999999999999999999999999999999999988


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      ..-++.+.+|+.   |+++++|++.. .....+.++.+.+-+++|- +...|++|+.+|.|.+|++...+++......|.
T Consensus       295 L~reR~vtVGgr---DrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  295 LSRERCVTVGGR---DRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             hcccceEEeccc---cceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccc
Confidence            877877777778   99999999943 3344566888899999998 567899999999999999999998888766554


Q ss_pred             ---C--------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eee----eeecceeEEecCCceeeee
Q psy519          222 ---E--------PVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS----KIG----IGVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       222 ---~--------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~----~~~~~~~~~s~~~~~~~~~  276 (351)
                         .        .|++++..|..+++++|+.+|.|++|.+..+-    ++.    .+-+++++|+++|..++++
T Consensus       370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence               1        58899999999999999999999999999872    222    2667889999999976555

>KOG0772|consensus

Probab=100.00  E-value=2.2e-31  Score=221.38  Aligned_cols=275  Identities=20%  Similarity=0.268  Sum_probs=219.4

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ..+|...|.++++.|.  |.+|++|+.|..|++||+...          .......|++++|++.|.. ++.+.....+|
T Consensus       163 l~hgtk~Vsal~~Dp~--GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPS--GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             ccCCceEEEEeeecCC--CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            3568899999999999  999999999999999999887          3344568999999999966 77788889999


Q ss_pred             EeCCCCeeeEE------------eeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc-eeEEec-----cCCCCe
Q psy519           76 WSLEQMYPLRI------------FVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGA-SVRVFS-----DHVSPV  136 (351)
Q Consensus        76 w~~~~~~~~~~------------~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~-----~~~~~i  136 (351)
                      +|....+....            .++|...++|.+|+|+. ..+++++.||++++||+...+ .++.++     +..-++
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            99765443322            35788999999999954 578899999999999997654 233332     234578


Q ss_pred             EEEEEccCCCEEEEEecCCCCCeEEEEEccCCce---eEEeccCCC--CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          137 LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHVS--PVLSIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      +.++|+|+|++||+|+.   ||.|++||.++...   ...-..|..  .|+++.|++||++|++-+.|+.+++||++..+
T Consensus       321 tsC~~nrdg~~iAagc~---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCL---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             eeeecCCCcchhhhccc---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            99999999999999999   99999999865421   222345666  89999999999999999999999999999765


Q ss_pred             EEE-Eee-ccCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeec
Q psy519          212 VIS-RFH-LQEHEPVTSLVWSVTGETLVTGSL------TGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       212 ~~~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~  278 (351)
                      ... ... +....+-+.++|||+.++|++|+.      .|.+.+||..+...+..     ..+.++.|+|.-+.+.+++.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence            432 221 122345678999999999999864      47899999988877765     45678999999999999999


Q ss_pred             cceeeEEE
Q psy519          279 NSRVRTLR  286 (351)
Q Consensus       279 ~~~~~~~~  286 (351)
                      +|...++.
T Consensus       478 dG~~~vyY  485 (641)
T KOG0772|consen  478 DGTAHVYY  485 (641)
T ss_pred             CCceEEEE
Confidence            98766543

>KOG0306|consensus

Probab=100.00  E-value=4.5e-31  Score=228.60  Aligned_cols=272  Identities=18%  Similarity=0.214  Sum_probs=237.0

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      .||...|.++++|.+  ...+++| ..+.+++|+..+.   ..-..+.+.+..|.|.+++ ++|...|.+.+||+.+...
T Consensus       370 ~GHR~dVRsl~vS~d--~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSD--SILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             ccchhheeEEEeecC--ceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence            579999999999999  7777776 5678999999876   3333457889999999988 9999999999999999998


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----Ccee--------EEeccCCCCeEEEEEccCCCEEEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-----GASV--------RVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      +.+.+.|.+.|+.++.+||+..+++|+.|.+|++||..-     +...        +++ .....|.|+.+||||++|++
T Consensus       447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEE
Confidence            889999999999999999999999999999999999741     1111        122 24678999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                      +--   |.++++|-+.+-+....+.+|.-||.++..+||++.+++|+.|..|++|-+.-|.+-+.+. .|...|.++.|-
T Consensus       526 sLL---dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~  601 (888)
T KOG0306|consen  526 SLL---DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFL  601 (888)
T ss_pred             Eec---cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEc
Confidence            998   9999999999999888899999999999999999999999999999999999998888774 788899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      |+..++.+++.|+.|+-||-...+.+..     ..+..++.+|+|.++++++.|.   .+++|..
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~---sIRlwE~  663 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK---SIRLWER  663 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc---eeEeeec
Confidence            9999999999999999999888776654     6777899999999888777765   5666653

>KOG0278|consensus

Probab=100.00  E-value=2.8e-32  Score=207.32  Aligned_cols=243  Identities=21%  Similarity=0.307  Sum_probs=218.2

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...||.+.|.......+  -.+-|+++.|=+-++||.-++    ...|...|.+++|+.|..+ ++|+.+..++|||++.
T Consensus        54 tfeghkgavw~~~l~~n--a~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKN--ATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             eeeccCcceeeeecCch--hhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            35789999999999988  888889999999999999887    6678899999999999877 9999999999999986


Q ss_pred             Ce-eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           81 MY-PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        81 ~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      .+ +...+.+|...|..+.|....+.|++++.|++|++||.+++..++.+. .+.+|+++.++++|.+|.++.    .+.
T Consensus       132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~----gss  206 (334)
T KOG0278|consen  132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY----GSS  206 (334)
T ss_pred             CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec----Cce
Confidence            54 556788999999999999988899999999999999999999999987 678999999999999988875    688


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      |..||..+-..++.++ ....|.+...+|+..++++|++|..++.||..+++.+-.+...|.++|.++.|+|+|...++|
T Consensus       207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence            9999999988888875 345688999999999999999999999999999999988766788999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcee
Q psy519          240 SLTGTVQFYGWPSASKI  256 (351)
Q Consensus       240 ~~dg~i~i~~~~~~~~~  256 (351)
                      +.||+|++|.+..++..
T Consensus       286 SEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceEEEEEecCCCch
Confidence            99999999998776544

>KOG0293|consensus

Probab=100.00  E-value=9.7e-32  Score=217.84  Aligned_cols=241  Identities=22%  Similarity=0.344  Sum_probs=206.0

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      -+...||..+|..+.||||  .++|++++.+..+.+||+.++      ..++...+.+++|.|||.. ++|+.|+++..|
T Consensus       262 ~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w  339 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW  339 (519)
T ss_pred             eeeeecccCceEEEEECCC--CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence            4567899999999999999  999999999999999999998      4456789999999999977 999999999999


Q ss_pred             eCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           77 SLEQMYPLRIFVGHK-QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      |++... ....++-. ..|.+++..+||+++++.+.|..|++++.++........ ...+|+++..|.+++++++--.  
T Consensus       340 dlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~--  415 (519)
T KOG0293|consen  340 DLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQ--  415 (519)
T ss_pred             cCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcc--
Confidence            987543 33443332 468999999999999999999999999988765554444 5688999999999999999888  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCC--EEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSP--VLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT  232 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  232 (351)
                       +..+++||++..+.++.+.+|...  +..-+|-. +..++++|++|+.|+||+..+++.+..+. .|...|++++|+|.
T Consensus       416 -~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~  493 (519)
T KOG0293|consen  416 -DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPA  493 (519)
T ss_pred             -cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCC
Confidence             999999999988888888888754  33445654 55899999999999999999999999886 67789999999994


Q ss_pred             -CCEEEEEeCCCeEEEEeCCC
Q psy519          233 -GETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       233 -~~~l~~~~~dg~i~i~~~~~  252 (351)
                       ..++|+|++||+|+||....
T Consensus       494 ~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CHHHhhccCCCCeEEEecCCc
Confidence             56789999999999998764

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.3e-30  Score=226.58  Aligned_cols=237  Identities=15%  Similarity=0.211  Sum_probs=186.1

Q ss_pred             ecCCCceEEEecCCc-----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCe--------eeEEeeCCCCCeE
Q psy519           31 LESQKNLQSRYLPYY-----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMY--------PLRIFVGHKQDVT   95 (351)
Q Consensus        31 ~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~i~   95 (351)
                      |+.++.+++|+....     +.+|...|.+++|+|+ +.+ ++|+.|++|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            455788999987654     7789999999999996 555 999999999999997542        3446788999999


Q ss_pred             EEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe
Q psy519           96 CARFHPKITY-IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF  174 (351)
Q Consensus        96 ~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~  174 (351)
                      +++|+|++.. +++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.   |+.|++||+++++.+..+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec---CCEEEEEECCCCcEEEEE
Confidence            9999998875 5788999999999999988777765 5678999999999999999988   999999999999999999


Q ss_pred             ccCCCCEEE-----EEECCCCcEEEEEcCCC----eEEEEEcCC-CcEEEEeeccCCCCE-EEEEEcCCCCEEEEEeCCC
Q psy519          175 SDHVSPVLS-----IAFSPCGKYLASGGEDG----LVLTHELTT-GRVISRFHLQEHEPV-TSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       175 ~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg  243 (351)
                      .+|.+.+..     ..|++++.++++++.++    .|++||+++ ++++..+.......+ ......+++.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            899876533     23458888999887664    799999995 556655543333233 2333344688999999999


Q ss_pred             eEEEEeCCCCceeee------eecceeEEecCCc
Q psy519          244 TVQFYGWPSASKIGI------GVYPRCAAQPVGF  271 (351)
Q Consensus       244 ~i~i~~~~~~~~~~~------~~~~~~~~s~~~~  271 (351)
                      .|++|++..+.....      .+...++|.|...
T Consensus       286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            999999987653322      3344567777543

>KOG0310|consensus

Probab=100.00  E-value=1e-30  Score=216.09  Aligned_cols=236  Identities=24%  Similarity=0.366  Sum_probs=208.0

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~   82 (351)
                      -...|.++.|-.|  |++||+|+..|.|+++|..+.     +.+|+.++....|+|++..  ++|+.|+.+++||+.+..
T Consensus        67 Fk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~  144 (487)
T KOG0310|consen   67 FKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY  144 (487)
T ss_pred             hccceeEEEeecC--CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence            3467889999999  999999999999999997764     8899999999999998754  889999999999999988


Q ss_pred             eeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           83 PLRIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ....+.+|++.|.|.+|+|. +..+++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|..+++++    ...+
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg----Gn~v  219 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG----GNSV  219 (487)
T ss_pred             EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC----CCeE
Confidence            76688999999999999995 458899999999999999987 5666665 899999999999999999987    5899


Q ss_pred             EEEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          161 RLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       161 ~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      ++||+.+| +.+..+..|...|+|+++..++..|++++-|+.+++||+.+-+.+..+.  -.++|.+++.+|+++.++.|
T Consensus       220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEe
Confidence            99999855 5555565699999999999999999999999999999988888888775  46799999999999999999


Q ss_pred             eCCCeEEEEeCCCCc
Q psy519          240 SLTGTVQFYGWPSAS  254 (351)
Q Consensus       240 ~~dg~i~i~~~~~~~  254 (351)
                      -.||.+.+-+....+
T Consensus       298 msnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  298 MSNGLVSIRRREVKK  312 (487)
T ss_pred             cccceeeeehhhccc
Confidence            999998887554443

>KOG0305|consensus

Probab=100.00  E-value=4.9e-31  Score=225.59  Aligned_cols=243  Identities=23%  Similarity=0.314  Sum_probs=213.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCC-CccceEEEEECCCCcEEEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSG-HDMTVWSVEACSKGLALTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~-~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~   78 (351)
                      .+..-+...|+++.|+++  |.+||+|..+|.|.|||....     ..+ |...|-+++|. ...+.+|+.|+.|..+|+
T Consensus       211 ~l~~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             EeEecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEE
Confidence            344445789999999999  999999999999999998777     555 99999999998 445599999999999999


Q ss_pred             CCCeeeEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEecCCC
Q psy519           79 EQMYPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~  156 (351)
                      ...+.... +.+|...|..++|++|+.++++|+.|+.+.|||....++...+..|...|.+++|+| ...+||+|+ ++.
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG-Gs~  366 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG-GSA  366 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC-CCc
Confidence            87765544 889999999999999999999999999999999988889999999999999999999 556677665 677


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEE--cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG--GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      |+.|++||..++..+.... ....|..+.|++..+-|+++  ..++.|.||+..+.+.+..+. .|...|..++++|||.
T Consensus       367 D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGE  444 (484)
T ss_pred             ccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-CCcceeEEEEECCCCC
Confidence            9999999999999888874 45689999999988777664  346789999999988887775 6778999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q psy519          235 TLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~  253 (351)
                      .+++|+.|.++++|++-..
T Consensus       445 ~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  445 TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEecccCcEEeccccCC
Confidence            9999999999999998764

>KOG0643|consensus

Probab=100.00  E-value=3.2e-30  Score=197.96  Aligned_cols=264  Identities=20%  Similarity=0.280  Sum_probs=223.1

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +++|..+++.+.|+.+|.+ .+++.|.+..||--.+|+.+.++.+|.+.|+|+....+.+.+++|+.|.++++||+.+|+
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            5789999999999999988 999999999999998999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecC--CCCCeEEEEEcc-------CCceeEEeccCCCCEEEEEECCCCcEEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTG--SYDKAVRLWSIT-------DGASVRVFSDHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~~d~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  195 (351)
                      .+..++ .+.+|..+.|+++|++++.....  .+.+.|.++|++       ..++...+..+...++.+-|.|-+++|++
T Consensus        86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            999987 57899999999999998877541  125679999998       34557777778899999999999999999


Q ss_pred             EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCc
Q psy519          196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGF  271 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~  271 (351)
                      |.+||.|.+||+++++....-...|...|+.+++++|..++++++.|.+-++||..+.+.++.    .+++..+++|...
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d  244 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD  244 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence            999999999999998766555446778999999999999999999999999999999888765    7888999999766


Q ss_pred             eeeeeeccce---------eeEE--Eeee--------ceeCceEEEeeEEEEecCCceee
Q psy519          272 EAATLAANSR---------VRTL--REMH--------EIVGPVVVVESFIVEIRPDKWYE  312 (351)
Q Consensus       272 ~~~~~~~~~~---------~~~~--~~~~--------~~~g~~~~~~~~~~~~~~~~~~~  312 (351)
                      .++.++....         .+.+  ++++        ...||-..+.+  ++|+|+|..-
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--vAfhPdGksY  302 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--VAFHPDGKSY  302 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--eEECCCCccc
Confidence            5544432221         1111  1222        34567777777  8999998743

>KOG0268|consensus

Probab=100.00  E-value=4.1e-32  Score=216.55  Aligned_cols=271  Identities=16%  Similarity=0.194  Sum_probs=228.8

Q ss_pred             CCCCccceEEeeecCCccc-cEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVE-DVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~-~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      +.||...|.+++=+|.  . ..+++|+.||.|++||+...     +..|.+.|..|.+.. +.+++++.|.+|+.|.++.
T Consensus        62 L~gHrdGV~~lakhp~--~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPN--KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             ccccccccchhhcCcc--hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccC
Confidence            4899999999999998  6 78999999999999999886     889999999999987 6779999999999999875


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEEEecCCCCCe
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASGGTGSYDKA  159 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~d~~  159 (351)
                       .+.+++.+ ...+..+.-+..++.+++++.  .|.|||.....+++.+.-..+.|.++.|+|-.. .|++++.   |+.
T Consensus       139 -~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s---Drs  211 (433)
T KOG0268|consen  139 -PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS---DRS  211 (433)
T ss_pred             -Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc---CCc
Confidence             46666643 455677777777778888764  699999999999999988889999999999655 5566657   999


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      |.+||++++.+++.... ...-..++|+|.+-.++++++|..++.||++...........|.+.|.++.|+|.|+-+++|
T Consensus       212 IvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             eEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            99999999988876632 33456799999888899999999999999998765555555677899999999999999999


Q ss_pred             eCCCeEEEEeCCCCceee------eeecceeEEecCCceeeeeeccceeeEEEee
Q psy519          240 SLTGTVQFYGWPSASKIG------IGVYPRCAAQPVGFEAATLAANSRVRTLREM  288 (351)
Q Consensus       240 ~~dg~i~i~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  288 (351)
                      +.|.+|+||.+..+....      ...+.++.||.|.+++.+++.+++++.|+-.
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            999999999998775432      3677889999999999999999877666543

>KOG0277|consensus

Probab=100.00  E-value=4.4e-31  Score=201.25  Aligned_cols=267  Identities=21%  Similarity=0.260  Sum_probs=210.6

Q ss_pred             EEeeecCCccccEEEEec-------CCCceEEEecCCc-------cCCCccceEEEEECCCC--cEEEEeCCCcEEEEeC
Q psy519           15 IQNSFKPETVEDVLANLE-------SQKNLQSRYLPYY-------TSGHDMTVWSVEACSKG--LALTGSRDTTARLWSL   78 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~-------~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~~   78 (351)
                      .++.|||-. ..+||.+.       ..|++.|.++...       ...-.+.+..++|+++.  .+++++.||++++||+
T Consensus        12 ysvqfSPf~-~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFV-ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccc-cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            689999953 33444332       3688899888533       22345778999999875  4499999999999996


Q ss_pred             C-CCeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEecCC
Q psy519           79 E-QMYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGTGS  155 (351)
Q Consensus        79 ~-~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~  155 (351)
                      . ...++..++.|..+|.++.|++ ++..+++++.|++|++|+...++.++++.+|..-|...+|+| .++.+++++.  
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg--  168 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG--  168 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC--
Confidence            5 3457889999999999999998 566788889999999999999999999999999999999999 6778888888  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCc-EEEEeeccCCCCEEEEEEcCC-
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGR-VISRFHLQEHEPVTSLVWSVT-  232 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~-  232 (351)
                       |+.+++||++.......+..|...+.++.|+. +...+++|+.|+.|+.||+++-+ ++..+ ..|.-.|+.+.|||. 
T Consensus       169 -d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  169 -DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHH  246 (311)
T ss_pred             -CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcch
Confidence             99999999998766666889999999999998 67889999999999999999765 34444 466678999999996 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee------eeeecceeEEecCC-ceeeeeeccceeeEEEeee
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKI------GIGVYPRCAAQPVG-FEAATLAANSRVRTLREMH  289 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~  289 (351)
                      ..+|++++.|-+++|||...+.-.      ++.-+..+.||+.. ..+|..+.|+   .+.+|+
T Consensus       247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe---~l~Vw~  307 (311)
T KOG0277|consen  247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE---LLYVWN  307 (311)
T ss_pred             hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc---ceeeec
Confidence            468899999999999999854322      22344456666642 3455555544   445554

>KOG0292|consensus

Probab=100.00  E-value=5.8e-30  Score=225.44  Aligned_cols=239  Identities=22%  Similarity=0.327  Sum_probs=212.5

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...|.++|..++|+|.  +.++++|++|..|++|+....     +.+|-+-|..+.|++.--+ ++++.|.+|+||+.++
T Consensus        47 FdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             hhccCCccceeeecCC--CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence            4679999999999999  999999999999999999887     8899999999999999888 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-----------------------------eeEEecc
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-----------------------------SVRVFSD  131 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~  131 (351)
                      ++++..+.+|...|.|..|+|...+++++|.|.+|++||+..-+                             ....+.+
T Consensus       125 r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence            99999999999999999999999999999999999999984211                             1234578


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      |...|.-++|+|.-..+++|+.   |+.|++|.+...+  .+-++.+|...|.++-|+|...++++.++|+.|++||+..
T Consensus       205 HDRGVNwaAfhpTlpliVSG~D---DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGAD---DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cccccceEEecCCcceEEecCC---cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            9999999999999999999998   9999999987654  3455779999999999999999999999999999999999


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      .+.++++. ..+.....++-+|..+++++| .|+-+.+|.++.
T Consensus       282 Rt~v~tfr-rendRFW~laahP~lNLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  282 RTSVQTFR-RENDRFWILAAHPELNLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             ccceeeee-ccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence            99999886 455788999999999987776 455566666653

>KOG0640|consensus

Probab=100.00  E-value=2.7e-31  Score=208.05  Aligned_cols=275  Identities=20%  Similarity=0.309  Sum_probs=226.0

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------------cCCCccceEEEEECCCCc
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------------TSGHDMTVWSVEACSKGL   63 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------------~~~~~~~i~~~~~~~~~~   63 (351)
                      ...|..++.+.+||||  |.++|+|+.|..|+|.|++..                       +-.|..+|+++.|+|...
T Consensus       108 lt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4568999999999999  999999999999999999833                       556889999999999998


Q ss_pred             E-EEEeCCCcEEEEeCCCCeeeEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeE
Q psy519           64 A-LTGSRDTTARLWSLEQMYPLRIF--VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVL  137 (351)
Q Consensus        64 ~-~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~  137 (351)
                      + ++++.|++|+++|.......+.+  .....++.++.|+|.|.+|+.|.....+++||+.+.++...-   ..|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            8 99999999999999764433222  234578999999999999999999999999999998765543   34889999


Q ss_pred             EEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCC-CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          138 SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHV-SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      ++.+++.+++.++++.   ||.|++||--+++++.++. .|. ..|.+..|..+++++++.+.|..+++|.+.+++.+..
T Consensus       266 ~V~Ys~t~~lYvTaSk---DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASK---DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             EEEecCCccEEEEecc---CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            9999999999999999   9999999988888888775 343 4688999999999999999999999999999999998


Q ss_pred             eeccCC----CCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeee------eecceeEEecCCceeeeeeccceeeE
Q psy519          216 FHLQEH----EPVTSLVWSVTGETLVTGSL-TGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       216 ~~~~~~----~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      +.....    .--+...|+....+++.-.+ .+.+.-||.++..++..      ..+..+.-||.+..+.+.+.+-   .
T Consensus       343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~---r  419 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF---R  419 (430)
T ss_pred             EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc---e
Confidence            864322    12345677777888777654 47899999998876643      4445566789888888777665   4


Q ss_pred             EEeee
Q psy519          285 LREMH  289 (351)
Q Consensus       285 ~~~~~  289 (351)
                      .|+|.
T Consensus       420 aRFWy  424 (430)
T KOG0640|consen  420 ARFWY  424 (430)
T ss_pred             eeeee
Confidence            45554

>KOG0641|consensus

Probab=100.00  E-value=2.5e-29  Score=188.81  Aligned_cols=270  Identities=21%  Similarity=0.302  Sum_probs=220.6

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------cCCCccceEEEEECCCCcE-EEEe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------TSGHDMTVWSVEACSKGLA-LTGS   68 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------~~~~~~~i~~~~~~~~~~~-~~~~   68 (351)
                      ....|.+++|+|.  |.+.++|+...++++......                    .+.|.+.|.|.+|+|.|.+ ++|+
T Consensus        31 dsqairav~fhp~--g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   31 DSQAIRAVAFHPA--GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             chhheeeEEecCC--CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            3467899999999  999999999999988765443                    5678899999999999999 9999


Q ss_pred             CCCcEEEEeCCCCee-----eEEeeCCCCCeEEEEEeCC----CCEEEEEe-CCCcEEEEeCCCCceeEEeccCCCCeEE
Q psy519           69 RDTTARLWSLEQMYP-----LRIFVGHKQDVTCARFHPK----ITYIGTGS-YDKAVRLWSITDGASVRVFSDHVSPVLS  138 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~  138 (351)
                      .|.+|++...+...+     -..+..|.+.|..++|..+    +..|++++ .|..|++-|...|+....+.+|.+.|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999987653221     2356779999999999653    45666654 4678888899999999999999999987


Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc-------CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-------HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      + ++-++-.+++|+.   |.+|++||++-..++..+..       ....|.+++..|.|++|++|-.|....+||++.++
T Consensus       189 l-yswn~~m~~sgsq---dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r  264 (350)
T KOG0641|consen  189 L-YSWNGAMFASGSQ---DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR  264 (350)
T ss_pred             E-EEecCcEEEccCC---CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence            6 3336888999988   99999999998888777642       12578999999999999999999999999999999


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--e-------eeeecceeEEecCCceeeeeecccee
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK--I-------GIGVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~-------~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      .++.+. +|...|+++.|+|...+|++++.|..|++-|++..-.  +       +......+.|+|....+...+.+.  
T Consensus       265 ~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk--  341 (350)
T KOG0641|consen  265 MIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK--  341 (350)
T ss_pred             eeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc--
Confidence            999986 7788999999999999999999999999999875311  1       113455789999988777666655  


Q ss_pred             eEEEeee
Q psy519          283 RTLREMH  289 (351)
Q Consensus       283 ~~~~~~~  289 (351)
                       +..+|.
T Consensus       342 -t~tlwa  347 (350)
T KOG0641|consen  342 -TATLWA  347 (350)
T ss_pred             -eEEEec
Confidence             444553

>KOG0276|consensus

Probab=100.00  E-value=5.4e-31  Score=223.81  Aligned_cols=236  Identities=21%  Similarity=0.281  Sum_probs=216.3

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +..++.+|.++.++|.... +++-.+|.+.||+.++...++.+.-...+|++..|-+..+.+++|+.|..|++|+..+++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            4568899999999999988 888999999999999999999998889999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLV  202 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  202 (351)
                      .+..+..|.+.|++++.+|...++++++.   |-.|++||.+.+ .+.+.+++|...|.+++|.| |.+.+++++-|++|
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCC---ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            99999999999999999999999999998   999999999875 67788999999999999999 77899999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTG--ETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~  275 (351)
                      ++|.+.+..+..++. .|...|++++|-+.|  .+|++|++|..++|||.++.+.+++     ..+..+.|+|.-..+++
T Consensus       166 KVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             EEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence            999999988888887 678899999998844  6999999999999999999987754     56677899999888999


Q ss_pred             eeccceeeEE
Q psy519          276 LAANSRVRTL  285 (351)
Q Consensus       276 ~~~~~~~~~~  285 (351)
                      ++.||+++.|
T Consensus       245 gsEDGTvriW  254 (794)
T KOG0276|consen  245 GSEDGTVRIW  254 (794)
T ss_pred             ecCCccEEEe
Confidence            9988866544

>KOG0313|consensus

Probab=100.00  E-value=1.3e-30  Score=209.13  Aligned_cols=241  Identities=23%  Similarity=0.372  Sum_probs=207.4

Q ss_pred             CCcCCCCccceEEeeecCC-ccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCc
Q psy519            4 SHLNHGDHKHFIQNSFKPE-TVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTT   72 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~-~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~   72 (351)
                      .++..||.++|.+++|.-. .....+++++.|.++++|..+..         ..||...|-++...++|.. ++|+.|.+
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM  216 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence            3566899999998877654 11345999999999999999887         5699999999999999977 99999999


Q ss_pred             EEEEeCCC-------------------------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           73 ARLWSLEQ-------------------------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        73 i~vw~~~~-------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      |.+|+.++                         +.++..+.+|.++|.++.|++ ...+++++.|.+|+.||+.++....
T Consensus       217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~  295 (423)
T KOG0313|consen  217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS  295 (423)
T ss_pred             eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence            99999321                         235567789999999999997 6789999999999999999999888


Q ss_pred             EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc---eeEEeccCCCCEEEEEECCC-CcEEEEEcCCCeEE
Q psy519          128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVL  203 (351)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~  203 (351)
                      .+. ....+.|+.++|..++|++|+.   |..+++||.|++.   ...++.+|...|.++.|+|. ...|++++.|+.++
T Consensus       296 ~~~-~~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  296 TLT-TNKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             eee-cCcceeEeecccccceeeecCC---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            886 4577899999999999999999   9999999999863   45678899999999999994 46788999999999


Q ss_pred             EEEcCCCc-EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          204 THELTTGR-VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       204 i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +||+|+.. ++..+. .|...|.++.|+ ++..+++|+.|.+|+++.-.
T Consensus       372 lWDvRS~k~plydI~-~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIA-GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEeccCCCcceeec-cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999887 777775 677899999997 57789999999999998754

>KOG0274|consensus

Probab=99.98  E-value=2.9e-30  Score=228.72  Aligned_cols=269  Identities=22%  Similarity=0.338  Sum_probs=226.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC-cEEEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~vw~~~~~~   82 (351)
                      +...+.+..|.    ..++++++.++.|++|+....      +.+|.+.|+++++..-+ .+++|+.|.+++|||..+++
T Consensus       207 ~~~~~~~~q~~----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            56677788888    457999999999999999887      78999999999998744 45999999999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      +...+.+|.+.+.++...  ...+++|+.|.+|++|+++++..+..+.+|..+|+++..+  +.++++|+.   |+.|++
T Consensus       283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---d~~v~V  355 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---DGTVKV  355 (537)
T ss_pred             EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec---CceEEE
Confidence            999999999999998776  4578889999999999999999999999999999999996  889999999   999999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC-cEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG-RVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      ||++++++++.+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+. .|..-+..+.+  .+++|++++.
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~a  431 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSA  431 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccc
Confidence            999999999999999999999988654 89999999999999999999 7887775 44455544443  6789999999


Q ss_pred             CCeEEEEeCCCCceeeeeecc---eeEEecC-CceeeeeeccceeeEEEeeeceeCceE
Q psy519          242 TGTVQFYGWPSASKIGIGVYP---RCAAQPV-GFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~~~~~---~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      |+.|++||..+++.++....+   .+.+-.. ...+++.+.++   .+++|+..+|...
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~---~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDG---SVKLWDLRSGTLI  487 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCC---eeEEEecccCchh
Confidence            999999999999988774442   2222222 24455555554   6778888777633

>KOG1036|consensus

Probab=99.98  E-value=1.2e-29  Score=198.53  Aligned_cols=269  Identities=16%  Similarity=0.214  Sum_probs=219.5

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeC
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSL   78 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~   78 (351)
                      -..+..+....|.++.|+|.  ++.|++++.||++++|+....    ...|..++.+++|.++...++|+-||.|+.+|+
T Consensus         5 ~~~l~npP~d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    5 EFELENPPEDGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccccCCCChhceeeEEEcCc--CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEe
Confidence            34556666789999999999  888888889999999999887    567899999999999888899999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      +++... .+..|..++.|+.+++....+++|+.|++|++||.+.......+. ....|.++..  .|+.|++|+.   +.
T Consensus        83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~---~r  155 (323)
T KOG1036|consen   83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTS---DR  155 (323)
T ss_pred             cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeec---Cc
Confidence            988654 456799999999999988899999999999999999755555554 3458888877  5788999888   99


Q ss_pred             eEEEEEccCCceeEEe--ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC----cEEEEeeccC---C-----CCE
Q psy519          159 AVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG----RVISRFHLQE---H-----EPV  224 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---~-----~~v  224 (351)
                      .+.+||+|+.....+.  ...+-.++++++-|++.-+++++-||.|.+=.+...    ..-..|+-+.   .     -+|
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV  235 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV  235 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence            9999999987544322  234457899999998888999999999887665544    1112222110   1     379


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccc
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ++++|+|-...|++|+.||.|.+||+.+.+.+..     ..+..++|+.+|..||.+.+-.
T Consensus       236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             ceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechh
Confidence            9999999999999999999999999999887754     4567899999999999887754

>KOG0283|consensus

Probab=99.98  E-value=1.1e-30  Score=229.33  Aligned_cols=236  Identities=24%  Similarity=0.383  Sum_probs=196.6

Q ss_pred             cC-CCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC-------------------------------------------
Q psy519           46 TS-GHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ-------------------------------------------   80 (351)
Q Consensus        46 ~~-~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~-------------------------------------------   80 (351)
                      .. .|.+.|+++.|++||+| |+||.|+.|+||.+..                                           
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 89999999999999999 9999999999998643                                           


Q ss_pred             -----------------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           81 -----------------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        81 -----------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                                       .+++..+.+|...|..+.|+.+ ++|++++.|.+|++|++...+++..|. |.+.|+|++|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence                             0123345689999999999975 689999999999999999999999997 999999999999


Q ss_pred             -CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC--
Q psy519          144 -CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE--  220 (351)
Q Consensus       144 -~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  220 (351)
                       |.+++++|+-   |+.|+||++...+...-. .-..-|++++|.|||+..++|+.+|.+++|+....+....+.+..  
T Consensus       420 vDDryFiSGSL---D~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  420 VDDRYFISGSL---DGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             cCCCcEeeccc---ccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence             8899999999   999999999776655444 445789999999999999999999999999998877665543322  


Q ss_pred             -----CCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          221 -----HEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       221 -----~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                           +..|+++.|.|. ...+++.+.|.+|+|||.+..+++..       ..-....|++||+++++++.|..+.+|+.
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence                 236999999984 44677888999999999977665543       23356789999999999998887666664

>KOG0313|consensus

Probab=99.98  E-value=4.4e-30  Score=206.10  Aligned_cols=266  Identities=23%  Similarity=0.301  Sum_probs=214.1

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECC-CC---cEEEEeCCCcEEEEeCCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACS-KG---LALTGSRDTTARLWSLEQM   81 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~-~~---~~~~~~~d~~i~vw~~~~~   81 (351)
                      |+.-|.++...    ++.+++|+.||.+++|+....    ..+|.++|.+++|.. +.   .+++++.|.++++|..+.+
T Consensus       104 hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  104 HDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             chhhhhhhccc----CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            55666666665    568999999999999999888    789999999888753 33   3699999999999998866


Q ss_pred             ee----eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-------------------------CceeEEeccC
Q psy519           82 YP----LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-------------------------GASVRVFSDH  132 (351)
Q Consensus        82 ~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~  132 (351)
                      +.    +..-++|...|.++...+++..+++|+.|..+.+|+..+                         +.++..+.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            43    233359999999999999999999999999999999321                         1245667889


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC--
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG--  210 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--  210 (351)
                      ..+|.++.|++ ...+++++.   |.+|+.||+.++.....+.. ...+.++.++|..++|++|+.|..+++||.+++  
T Consensus       260 t~~Vs~V~w~d-~~v~yS~Sw---DHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSW---DHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             ccceeeEEEcC-CCceEeecc---cceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            99999999997 678888888   99999999999998888754 567899999999999999999999999999875  


Q ss_pred             cEEEEeeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-eeee-----eecceeEEecCCceeeeeeccceee
Q psy519          211 RVISRFHLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWPSAS-KIGI-----GVYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~-~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      ..+..-...|..-|.++.|+|.. ..|++|+.|+++++||+++.+ .+..     ..+.++.|+ .+..+++++.|.+++
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence            33433334677899999999965 467889999999999999876 4432     344455665 355667777776554


Q ss_pred             EE
Q psy519          284 TL  285 (351)
Q Consensus       284 ~~  285 (351)
                      ..
T Consensus       414 i~  415 (423)
T KOG0313|consen  414 IF  415 (423)
T ss_pred             Ee
Confidence            43

>KOG0294|consensus

Probab=99.97  E-value=1.5e-29  Score=198.52  Aligned_cols=239  Identities=17%  Similarity=0.245  Sum_probs=204.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC---cEEEEeCCCcEEEEe
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG---LALTGSRDTTARLWS   77 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~---~~~~~~~d~~i~vw~   77 (351)
                      ....|..+++++|.+    +.++|+|+.|.+|+|||+...     +..|.+.|+++.|.+.-   .+++|+.||.|.+|+
T Consensus        38 ~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            356799999999998    999999999999999999987     67899999999999887   569999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ......+..+++|...|+.++.+|.+++.++.+.|+.+++||+-+|+.-..+. .......+.|+|.|.+++.+.    .
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~----~  188 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG----R  188 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe----c
Confidence            99999999999999999999999999999999999999999999888655554 223345599999999888887    4


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEE--cCCCCE
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVW--SVTGET  235 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~  235 (351)
                      ..|-+|.+.+......+... ..+.++.|- ++..|++|..|+.|.+||..+..+...+. .|...|..+.+  .|++.+
T Consensus       189 ~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceE
Confidence            78999999887666555432 446666665 67889999999999999998888777775 78888998874  457889


Q ss_pred             EEEEeCCCeEEEEeCCCCcee
Q psy519          236 LVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      |++++.||.|++||++...+.
T Consensus       266 lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  266 LVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             EEEeccCceEEEEEccccccC
Confidence            999999999999999876443

>KOG0274|consensus

Probab=99.97  E-value=5.9e-30  Score=226.77  Aligned_cols=240  Identities=22%  Similarity=0.363  Sum_probs=215.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~   81 (351)
                      ..||.+.|.++++...  ++.|++|+.|.++++||..++     +.+|.+.|.++...+ ..+++|+.|.+|+||+++++
T Consensus       245 l~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSG--GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             ccCCCCCceeEEEecC--CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCc
Confidence            6799999999999987  899999999999999999888     889999999988643 23488899999999999999


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ..+..+.+|..+|.++..+  +.++++|+.|++|++||+.+++++..+.+|...|+++.+.+. +.+++|+.   |+.|+
T Consensus       322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~---D~~Ik  395 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL---DTTIK  395 (537)
T ss_pred             ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee---ccceE
Confidence            9999999999999999997  789999999999999999999999999999999999988655 89999999   99999


Q ss_pred             EEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          162 LWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       162 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      +||+++. +++..+..|..-+..+.+  .+++|++++.|+.|++||..++++++.+...+...+..+++.  ...+++++
T Consensus       396 vWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~  471 (537)
T KOG0274|consen  396 VWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS  471 (537)
T ss_pred             eecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence            9999999 999999999888866554  588999999999999999999999998875455788888876  46788889


Q ss_pred             CCCeEEEEeCCCCceeeee
Q psy519          241 LTGTVQFYGWPSASKIGIG  259 (351)
Q Consensus       241 ~dg~i~i~~~~~~~~~~~~  259 (351)
                      .||.+++||+++++..+..
T Consensus       472 ~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCCeeEEEecccCchhhhh
Confidence            9999999999999887653

>KOG0308|consensus

Probab=99.97  E-value=1.5e-30  Score=222.05  Aligned_cols=266  Identities=18%  Similarity=0.279  Sum_probs=221.6

Q ss_pred             EeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCCc-EEEEeCCCcEEEEeCCCC--
Q psy519           16 QNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSLEQM--   81 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~~-~~~~~~d~~i~vw~~~~~--   81 (351)
                      ++..++. .+++|.+|++||.|++|+....           .+.|...|+.+....+++ +++++.|-+|++|+...+  
T Consensus        29 ~Lq~da~-~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   29 ALQLDAP-NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             hccccCC-CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence            4555543 1678999999999999998765           567999999999998885 599999999999999876  


Q ss_pred             eeeEEeeCCCCCeEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCce--e--------EEec-cCCCCeEEEEEccCCCEEE
Q psy519           82 YPLRIFVGHKQDVTCARF-HPKITYIGTGSYDKAVRLWSITDGAS--V--------RVFS-DHVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~i~~~~~~~~~~~l~  149 (351)
                      -++.++..|...|.|+++ -++..++++|+.|+.|++||+.++..  +        ..+. ++..+|++++.++.|..++
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            577888899999999999 77888999999999999999997732  2        2222 6788999999999999999


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEE
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  229 (351)
                      .|+.   ++.+++||.++++.+..+.+|...|+.+..++||..+++++.||.|++||+...+++.++. .|...|.++..
T Consensus       188 sGgt---ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~  263 (735)
T KOG0308|consen  188 SGGT---EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQS  263 (735)
T ss_pred             ecCc---ccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEee
Confidence            9998   9999999999999999999999999999999999999999999999999999999999986 45666999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceee-----eeecceeEEecCCceeeeeeccceeeEEE
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASKIG-----IGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      +|+=..+++|+.||.|..=|+.+.....     ..++..+..+.....+-+++.++.++.|.
T Consensus       264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  264 SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             CCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999999999999998853221     13444444443333334556666555444

>KOG0973|consensus

Probab=99.97  E-value=7.2e-30  Score=229.83  Aligned_cols=245  Identities=20%  Similarity=0.282  Sum_probs=212.1

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------------cCCCccceEEEEECCCCc
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------------TSGHDMTVWSVEACSKGL   63 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------------~~~~~~~i~~~~~~~~~~   63 (351)
                      ...|...|.|+.|+||  |++||+|++|+.|.+|.....                       +.+|.+.|..++|+|++.
T Consensus        65 m~~h~~sv~CVR~S~d--G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPD--GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             eccccCceeEEEECCC--CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            4679999999999999  999999999999999998831                       778999999999999999


Q ss_pred             E-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC------CCCe
Q psy519           64 A-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH------VSPV  136 (351)
Q Consensus        64 ~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i  136 (351)
                      + ++++.|++|.+|+..+.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|++.+....+.+.++      ....
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence            8 99999999999999999999999999999999999999999999999999999998776565555432      3457


Q ss_pred             EEEEEccCCCEEEEEecC-CCCCeEEEEEccCCceeEEeccCCCCEEEEEECC-----CCc------------EEEEEcC
Q psy519          137 LSIAFSPCGKYLASGGTG-SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-----CGK------------YLASGGE  198 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~~------------~l~~~~~  198 (351)
                      ..+.|||||++|++...- ..-..+.|.+-.+.+.-..+-+|..++.++.|+|     ..+            .+|+|+.
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            889999999999987431 1135688988777777788889999999999998     112            6789999


Q ss_pred             CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          199 DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       199 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      |++|.||.....+++.....-....|..++|+|||..|+++|.||+|.++.++..
T Consensus       303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            9999999998878776654444578999999999999999999999999998753

>KOG0275|consensus

Probab=99.97  E-value=1.3e-30  Score=205.63  Aligned_cols=241  Identities=21%  Similarity=0.314  Sum_probs=207.9

Q ss_pred             CCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEE--------eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy519           47 SGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRI--------FVGHKQDVTCARFHPKITYIGTGSYDKAVRL  117 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~--------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  117 (351)
                      .+....+.|..|+|||++ ++|+.||-|.||+..+|+....        +..+..+|.|+.|+.|...+++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            455667889999999999 9999999999999998875443        3457789999999999999999999999999


Q ss_pred             EeCCCCceeEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEE
Q psy519          118 WSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       118 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  196 (351)
                      |.+++|.+++.+. .|...|+|+.|+.|+..+++++.   |.++++.-+.+|+.++.+.+|...|+...|.+||..++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            9999999999986 79999999999999999999998   9999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeee--------eecceeEE
Q psy519          197 GEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSV-TGETLVTGSLTGTVQFYGWPSASKIGI--------GVYPRCAA  266 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~~~~~  266 (351)
                      +.||+|++|+.++.+++.++..... -+|.++..-| +...++++...+++++-++.. +.++.        +....+..
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEe
Confidence            9999999999999999988864433 5788888777 456788888899999999874 33332        45567899


Q ss_pred             ecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          267 QPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       267 s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ||.|.++.+.+.++...   .+...+|.
T Consensus       446 SpkGewiYcigED~vlY---CF~~~sG~  470 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLY---CFSVLSGK  470 (508)
T ss_pred             cCCCcEEEEEccCcEEE---EEEeecCc
Confidence            99999999998887544   44444554

>KOG0264|consensus

Probab=99.97  E-value=1.2e-29  Score=208.24  Aligned_cols=241  Identities=21%  Similarity=0.346  Sum_probs=199.5

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------------cCCCccceEEEEECCCC--cEEEEeCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------------TSGHDMTVWSVEACSKG--LALTGSRD   70 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------~~~~~~~i~~~~~~~~~--~~~~~~~d   70 (351)
                      ..|.+.|..+.+-|.+ ...+|+.+..+.++|||....               +.+|...-.++.|++..  .+++++.|
T Consensus       121 i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            4588899999999972 456677788899999998765               56788878889999875  55999999


Q ss_pred             CcEEEEeCCCCe-------eeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC--CCceeEEeccCCCCeEEEE
Q psy519           71 TTARLWSLEQMY-------PLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSIT--DGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        71 ~~i~vw~~~~~~-------~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~  140 (351)
                      ++|++||+....       +...+.+|...|..++|++ +..++++++.|+.+.|||++  +.++.....+|.+++.|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            999999997432       3567789999999999999 55688999999999999999  5566677788999999999


Q ss_pred             Ecc-CCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEE----
Q psy519          141 FSP-CGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVI----  213 (351)
Q Consensus       141 ~~~-~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----  213 (351)
                      |+| ++..||+|+.   |++|++||+|+- +++..+.+|...|.++.|+|+ ...|++++.|+.+.+||+..-...    
T Consensus       280 fnp~~~~ilAT~S~---D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  280 FNPFNEFILATGSA---DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             eCCCCCceEEeccC---CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            999 5667888888   999999999985 578889999999999999995 468899999999999998642211    


Q ss_pred             ---------EEeeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCC
Q psy519          214 ---------SRFHLQEHEPVTSLVWSVTGET-LVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       214 ---------~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~~~~~  252 (351)
                               .-+...|...|..+.|+|+..+ |++.++|+.+.||++..
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                     1223355578999999998775 57788999999999763

>KOG0641|consensus

Probab=99.97  E-value=2.1e-28  Score=183.88  Aligned_cols=240  Identities=18%  Similarity=0.296  Sum_probs=204.8

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCC----CcE-EEE-eC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSK----GLA-LTG-SR   69 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~----~~~-~~~-~~   69 (351)
                      -.+.|.+.|.|++|||+  |++|++|+.|..|++..++..          +.-|.+.|..++|-.+    +.+ +++ ..
T Consensus        84 r~khhkgsiyc~~ws~~--geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPC--GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             eccccCccEEEEEecCc--cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            35678999999999999  999999999999999877655          5678899999999754    344 443 45


Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-------CCCCeEEEEEc
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-------HVSPVLSIAFS  142 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~  142 (351)
                      |..|++-|..+++..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++..+..       ..+.|.+++..
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence            7788888999999999999999999876 444688999999999999999998888777632       23678999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC---cEEEEeecc
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG---RVISRFHLQ  219 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~  219 (351)
                      |.|++|++|-.   |....+||++.++.++.+..|...|+++.|+|...++++++.|..|++-|+...   +.......+
T Consensus       241 psgrll~sg~~---dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e  317 (350)
T KOG0641|consen  241 PSGRLLASGHA---DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE  317 (350)
T ss_pred             CCcceeeeccC---CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence            99999999988   999999999999999999999999999999999999999999999999998632   222223346


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          220 EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       220 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      |...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            67788999999998889999999999999765

>KOG1407|consensus

Probab=99.97  E-value=7.6e-29  Score=189.80  Aligned_cols=239  Identities=21%  Similarity=0.272  Sum_probs=207.4

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...+|...|-.++|+|.. .+++++++.|.+|++||....    .......=.-+.|+|+|.+ +.+..|..|...|..+
T Consensus        59 ~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~  137 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDART  137 (313)
T ss_pred             cccCCCcchhhheeCCCC-CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecc
Confidence            357899999999999973 678999999999999999887    1122233345789999988 9999999999999998


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      .+.....+ ....+..+.|+.++..++.....|.|.|....+.+++..++.|.....|+.|+|+|+++|+|+.   |..+
T Consensus       138 ~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA---DAlv  213 (313)
T KOG1407|consen  138 YKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA---DALV  213 (313)
T ss_pred             cceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc---ccee
Confidence            88776654 4556788899877777777777799999999999999999999999999999999999999999   9999


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      .+||+..--+++.+..+.-+|+.+.|+.||++||++++|..|-|=++++|..+..+  ++.++...++|+|...+||.++
T Consensus       214 SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  214 SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEe
Confidence            99999998899999999999999999999999999999999999999999998876  5778899999999999999887


Q ss_pred             CC---------CeEEEEeCC
Q psy519          241 LT---------GTVQFYGWP  251 (351)
Q Consensus       241 ~d---------g~i~i~~~~  251 (351)
                      .|         |.+++|-++
T Consensus       292 ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  292 DDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCCCCccccccceeEEecCC
Confidence            65         456666544

>KOG1446|consensus

Probab=99.97  E-value=9.4e-28  Score=188.82  Aligned_cols=243  Identities=20%  Similarity=0.226  Sum_probs=206.3

Q ss_pred             CCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCc
Q psy519           48 GHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGA  124 (351)
Q Consensus        48 ~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~  124 (351)
                      .....|+++.|+++|.+ ++++.|.++++||..++++++++..++..+..++|....+.++.++.  |.+|+..++.+.+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            35678999999999998 88899999999999999999999988889999999776666766666  8899999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      .++.+.+|...|.+++.+|-+..+++++.   |++|++||+|..++...+.....+  .++|.|+|-++|++.....|++
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~---D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSL---DKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEeccc---CCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEE
Confidence            99999999999999999999999999999   999999999988887777554444  4789999999999998889999


Q ss_pred             EEcCCC--cEEEEeecc--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec--------ceeEEecCCce
Q psy519          205 HELTTG--RVISRFHLQ--EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY--------PRCAAQPVGFE  272 (351)
Q Consensus       205 ~d~~~~--~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--------~~~~~s~~~~~  272 (351)
                      ||++.-  .+...+...  .......+.|+|||++|+.++..+.+++.|.-+|..+.....        ....|+||+++
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            999863  333444333  346889999999999999999999999999999987765211        36789999999


Q ss_pred             eeeeeccceeeEEEeeeceeCceEEE
Q psy519          273 AATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      +..+..+|   .+.+|+.++|+.+..
T Consensus       247 vl~gs~dg---~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  247 VLSGSDDG---TIHVWNLETGKKVAV  269 (311)
T ss_pred             EEEecCCC---cEEEEEcCCCcEeeE
Confidence            99998888   556677788875443

>KOG1274|consensus

Probab=99.97  E-value=2.1e-28  Score=216.59  Aligned_cols=270  Identities=18%  Similarity=0.233  Sum_probs=229.9

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      ...|....+.++|.|+  |++|++++.||.|++|+....      ...+...|.+++...+ .+++++.+++|.+|.+.+
T Consensus         9 Ryaht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhhccCceEEEEEcCC--CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCCC
Confidence            3479999999999999  999999999999999987665      2237778888876543 679999999999999998


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ++.-..+....-++++++++.+|+.++.|+.|-.|++.++........+++|..+|.++.|+|++++||+.+.   ||.|
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~---dG~v  162 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC---DGKV  162 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---CceE
Confidence            8876666667789999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeEEecc--------CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC-CEEEEEEcC
Q psy519          161 RLWSITDGASVRVFSD--------HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSV  231 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~  231 (351)
                      ++||+.++.....+.+        ....+..++|+|++..++..+.|+.|++|+..+......+...+.. .+..+.|+|
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP  242 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence            9999999876665542        1345678999999888888889999999999999888877655553 499999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcee-eeeecceeEEecCCceeeeeecccee
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKI-GIGVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      +|+|||+++.||.|.|||+++-... ....+..++|.|++..+-+....+..
T Consensus       243 nG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  243 NGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             CCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEEeecccc
Confidence            9999999999999999999974331 22567788999998877666665543

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.8e-28  Score=216.90  Aligned_cols=226  Identities=13%  Similarity=0.184  Sum_probs=177.8

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCCccceEEEEECCCCcE--EEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGHDMTVWSVEACSKGLA--LTGSRD   70 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~--~~~~~d   70 (351)
                      ...+|...|.+++|+|+. +.+||+|+.|+.|++|++...             +.+|...|.+++|+|++..  ++++.|
T Consensus        69 ~L~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEcCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            356899999999999951 689999999999999998742             3579999999999999864  688999


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEE-----EEccCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI-----AFSPCG  145 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-----~~~~~~  145 (351)
                      ++|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+.+.     .|++++
T Consensus       148 gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999999998777765 56789999999999999999999999999999999999998888765432     346888


Q ss_pred             CEEEEEecCC-CCCeEEEEEccC-CceeEEec--cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          146 KYLASGGTGS-YDKAVRLWSITD-GASVRVFS--DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       146 ~~l~~~~~~~-~d~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      .++++++... .++.|+|||+++ .+++..+.  .+.+.+......+++.++++|+.|+.|++|++..+.....-...+.
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~  306 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSC  306 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccC
Confidence            9999877610 124799999995 45555443  2333333344455688999999999999999987653322222344


Q ss_pred             CCEEEEEEcCCC
Q psy519          222 EPVTSLVWSVTG  233 (351)
Q Consensus       222 ~~v~~~~~~~~~  233 (351)
                      .+..+++|.|+.
T Consensus       307 ~p~~g~~f~Pkr  318 (568)
T PTZ00420        307 SPFRSFGFLPKQ  318 (568)
T ss_pred             CCccceEEcccc
Confidence            678899999964

>KOG2096|consensus

Probab=99.97  E-value=2.8e-28  Score=191.82  Aligned_cols=266  Identities=18%  Similarity=0.240  Sum_probs=209.0

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-cCCC--------ccceEEEEECCCCcE--EEEeCCCcEE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-TSGH--------DMTVWSVEACSKGLA--LTGSRDTTAR   74 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-~~~~--------~~~i~~~~~~~~~~~--~~~~~d~~i~   74 (351)
                      .+++|...|++++||.|  |+.||+.+.|+.|++|++... .+.|        -+..+.+.|.||-+-  +.+-...+++
T Consensus        81 ~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            46789999999999999  999999999999999999876 1122        235677899999865  5555677899


Q ss_pred             EEeCCCCe---eeE---------EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc
Q psy519           75 LWSLEQMY---PLR---------IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        75 vw~~~~~~---~~~---------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  142 (351)
                      +|.+...+   ...         .-+.|...+..+-.-.++.+|++++.|..|.+|+++ |+.+..+......-+..+.|
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            99874321   111         112355566677777788999999999999999998 88888888777788889999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEcc---CC-----ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC----C
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSIT---DG-----ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT----G  210 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~  210 (351)
                      |+|+++++++.   ...+++|.+-   .|     .....+++|...|..++|+|+...+++.+.||.+++||..-    +
T Consensus       238 P~GRFia~~gF---TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  238 PDGRFIAVSGF---TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             CCCcEEEEecC---CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            99999999988   8899999863   22     34566889999999999999999999999999999999742    1


Q ss_pred             ---cEEEEee---ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------eeeecceeEEecCCceeeeeec
Q psy519          211 ---RVISRFH---LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI------GIGVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       211 ---~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~  278 (351)
                         +.++...   ....+....+.++|.|+.||... ...+++|..++++..      +...+.+++|+|+|+++++.+.
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence               2222221   11123456899999999988765 458999999887655      4578889999999999887654

>KOG0289|consensus

Probab=99.97  E-value=2.1e-28  Score=199.67  Aligned_cols=240  Identities=22%  Similarity=0.357  Sum_probs=209.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      .+..||...|..+.|+|+  ...+++++.|-.|++|.....     ...|..+|+.+..+|.|.| ++++.|++..+.|+
T Consensus       255 ~~~~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~  332 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI  332 (506)
T ss_pred             hhccCcceEEEEEEeccc--hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence            567899999999999999  999999999999999998776     7789999999999999999 99999999999999


Q ss_pred             CCCeeeEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           79 EQMYPLRIFVG--HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      +++..+.....  ..-.+++.+|+|||..|.+|..||.+++||+.++..+..|.+|.++|..++|+.+|-+|++++.   
T Consensus       333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad---  409 (506)
T KOG0289|consen  333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD---  409 (506)
T ss_pred             cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec---
Confidence            99988766643  2346899999999999999999999999999999999999999999999999999999999998   


Q ss_pred             CCeEEEEEccCCceeEEeccC-CCCEEEEEECCCCcEEEEEcCCCeEEEEEcC--CCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          157 DKAVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLASGGEDGLVLTHELT--TGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                      |+.|++||+|.-+...++... ..++.++.|.+.|.+|+.++.+=.|++++-.  +.+++..+. .+.+..+.+.|....
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHA  488 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-hcccccceeeecccc
Confidence            999999999988777666533 2368999999999999999887677776643  344454443 334578899999999


Q ss_pred             CEEEEEeCCCeEEEEeC
Q psy519          234 ETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~  250 (351)
                      +++++++.|..++++.+
T Consensus       489 q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  489 QYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeeccchhheEEeec
Confidence            99999999999988764

>KOG1332|consensus

Probab=99.97  E-value=2e-29  Score=191.15  Aligned_cols=245  Identities=20%  Similarity=0.273  Sum_probs=201.8

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECC--CCcE-EEEeCC
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACS--KGLA-LTGSRD   70 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~--~~~~-~~~~~d   70 (351)
                      -+..+...|..-|..+...-.  |++||++++|++|+|+....+        +.+|+++|+.++|..  .|.+ ++++.|
T Consensus         2 ~~q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen    2 VMQTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             cceehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence            345677889999998877777  999999999999999999877        789999999999986  5777 999999


Q ss_pred             CcEEEEeCCCCe--eeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCC-c--eeEEeccCCCCeEEEEEcc
Q psy519           71 TTARLWSLEQMY--PLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDG-A--SVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        71 ~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~~~i~~~~~~~  143 (351)
                      |.|.||.-++++  ....+..|...|++++|-|.  |-.|++++.||.|.+.+.++. .  ..+....|.-.|.+++|.|
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            999999988774  33455689999999999884  568899999999999998764 2  2344567899999999999


Q ss_pred             C---C-----------CEEEEEecCCCCCeEEEEEccCC--ceeEEeccCCCCEEEEEECCCC----cEEEEEcCCCeEE
Q psy519          144 C---G-----------KYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCG----KYLASGGEDGLVL  203 (351)
Q Consensus       144 ~---~-----------~~l~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~  203 (351)
                      .   |           +.|++|+.   |..|+||+..++  ..-..+.+|...|+.++|+|.-    ..|+++++||.+.
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             cCCCccccccCcccccceeeccCC---ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            5   4           56999998   999999998875  3344588999999999999943    5899999999999


Q ss_pred             EEEcCCCc--EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          204 THELTTGR--VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       204 i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      ||-.+...  -..++.......+..+.||..|++|++++.|+.|.+|.-.
T Consensus       237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            99876321  1122222334679999999999999999999999999754

>KOG0288|consensus

Probab=99.97  E-value=4.2e-29  Score=202.57  Aligned_cols=236  Identities=24%  Similarity=0.366  Sum_probs=206.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCc-EEEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~-~~~~~~d~~i~vw~~   78 (351)
                      ..+.|..++|++++|.++  +..+++++.|+.+++|++...     +.+|++.|+++.|..... .++|+.|.+|+.||+
T Consensus       213 ~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSD--NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhccCCCcceeeecCC--CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            345667788999999999  999999999999999999988     889999999999988776 599999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      ....+.+++. ....+..|..+  ...+++|-.|+.|++||+++..+......+ +.|+++..++++..+++++.   |.
T Consensus       291 ~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssR---Dd  363 (459)
T KOG0288|consen  291 QKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSR---DD  363 (459)
T ss_pred             hhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecC---CC
Confidence            9988877664 34456666665  457888889999999999999999988765 59999999999999999988   99


Q ss_pred             eEEEEEccCCceeEEeccC----CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC-CEEEEEEcCCC
Q psy519          159 AVRLWSITDGASVRVFSDH----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTG  233 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~  233 (351)
                      .+.+.|+++.+....+...    ....+.+.|+|++.|+++|+.||.|+||++.++++...+...+.. .|.++.|+|.|
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence            9999999998887776532    234788999999999999999999999999999999888766554 79999999999


Q ss_pred             CEEEEEeCCCeEEEEe
Q psy519          234 ETLVTGSLTGTVQFYG  249 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~  249 (351)
                      ..|++++.++.+.+|.
T Consensus       444 ~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  444 SGLLSADKQKAVTLWT  459 (459)
T ss_pred             chhhcccCCcceEecC
Confidence            9999999999999993

>KOG0640|consensus

Probab=99.97  E-value=6.5e-29  Score=194.75  Aligned_cols=244  Identities=20%  Similarity=0.262  Sum_probs=209.4

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEE
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTAR   74 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~   74 (351)
                      +.+....|..+|.++.|+|.  ...|++|+.|++|+++|....       ......+|.++.|+|.|.+ +.|....+++
T Consensus       164 vIRTlYDH~devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~r  241 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLR  241 (430)
T ss_pred             eEeehhhccCcccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCcee
Confidence            34556678999999999999  999999999999999999876       3345678999999999999 7888888999


Q ss_pred             EEeCCCCeeeEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-C-CCCeEEEEEccCCCEEE
Q psy519           75 LWSLEQMYPLRIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-H-VSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        75 vw~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~  149 (351)
                      +||+++.++...-   .+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. | ...|.+..|..+|++++
T Consensus       242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL  321 (430)
T KOG0640|consen  242 LYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL  321 (430)
T ss_pred             EEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence            9999998875443   46889999999999999999999999999999999999888743 3 46899999999999999


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      +.+.   |..+++|.+.+++.+..+.+..     .--+...|+....+++.-.+ .+.+.-||.+++.....+.+.|.+.
T Consensus       322 sSG~---DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a  398 (430)
T KOG0640|consen  322 SSGK---DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA  398 (430)
T ss_pred             ecCC---cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC
Confidence            9999   9999999999999999886531     11234567766667665543 5679999999999888888899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          224 VTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      ++.+.-+|.+.-+++++.|-.+++|--+
T Consensus       399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  399 VRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ceEEEeCCCCCceeeecccceeeeeeec
Confidence            9999999999999999999999999644

>KOG0639|consensus

Probab=99.97  E-value=6.4e-29  Score=206.35  Aligned_cols=269  Identities=17%  Similarity=0.239  Sum_probs=227.5

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      |..-|-++..|..  .+++.+|+ .|.|+|||+...          .....+-|+++...|||+- ++|++-.++.|||+
T Consensus       418 HGEvVcAvtIS~~--trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  418 HGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             cCcEEEEEEecCC--cceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            5577788999988  88899885 478999999876          2334577889999999976 99999999999999


Q ss_pred             CCCee--eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           79 EQMYP--LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      ....+  ...+....-.+.+++.+||.+..+++..||.|.|||+.+...++.|++|.+.+.|+..+++|..|.+|+-   
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl---  571 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL---  571 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC---
Confidence            76543  2333333456778999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      |.+|+.||+++++.+... .....|.++..+|.+.++++|-+++.+.+......+. ..+. .|++.|.++.|.+.|+++
T Consensus       572 DntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEEEEecccCcee
Confidence            999999999999877665 3467899999999999999999999998887654433 3332 567899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          237 VTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ++.+.|+-+..|..+-|..+..    ..+.+|.+|.+.+++++++.+..-.++.+
T Consensus       649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999998876653    67788999999999999988876555543

>KOG0300|consensus

Probab=99.97  E-value=1.8e-28  Score=192.97  Aligned_cols=277  Identities=20%  Similarity=0.298  Sum_probs=229.1

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      .....||...|..++-...  ...+.+++.|.+.+||.++.+     +.+|.+.|+++.|++.+.+ ++++.|++-.||.
T Consensus       141 vre~~GHkDGiW~Vaa~~t--qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADST--QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhhhcccccceeeehhhcC--CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            4567899999999999988  889999999999999999998     8899999999999999998 9999999999997


Q ss_pred             C------CC----------------------------------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy519           78 L------EQ----------------------------------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL  117 (351)
Q Consensus        78 ~------~~----------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  117 (351)
                      .      ..                                  ..++..+.+|...|.+..|...|+.+++++.|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            2      10                                  1134456789999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEE
Q psy519          118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~  196 (351)
                      ||+++++.+..+.+|....+.++-+|..+++++.+.   |.+.++||++.. ..+..|++|...|+++.|..+ ..+++|
T Consensus       299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr---DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg  374 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR---DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG  374 (481)
T ss_pred             eeeccCceeccccCcchhccccccCCcceEEEEecc---CceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence            999999999999999999999999999999999988   999999999854 456778999999999999865 458899


Q ss_pred             cCCCeEEEEEcCCCc-EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---------eecceeEE
Q psy519          197 GEDGLVLTHELTTGR-VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI---------GVYPRCAA  266 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------~~~~~~~~  266 (351)
                      +.|..|++||+++.+ ++.++.  ..++++.++.+..+.+++.--.+..|++||++.....+.         ..+.+++|
T Consensus       375 SDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             CCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence            999999999999875 445553  467899999998888999988889999999986543322         34556777


Q ss_pred             ecCCceeeeeeccceeeEEEeee
Q psy519          267 QPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       267 s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ..+... .-..+.|-++...-|.
T Consensus       453 ~eehp~-cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  453 LEEHPA-CNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cccCcc-cccccccccceeeeeE
Confidence            654432 2222333344444444

>KOG2055|consensus

Probab=99.97  E-value=3e-28  Score=200.26  Aligned_cols=274  Identities=18%  Similarity=0.213  Sum_probs=227.4

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCc-E-EEEeCCCcEEEEeC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGL-A-LTGSRDTTARLWSL   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~-~-~~~~~d~~i~vw~~   78 (351)
                      +...++|++|.|+|.  .++|++++.|+.+++|.++..       ..-...+|.+..|.|+|. . ++++....++.||+
T Consensus       210 ~ps~~~I~sv~FHp~--~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPT--APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             CcCcCCceEEEecCC--CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            444689999999999  999999999999999999877       233457899999999997 4 88899999999999


Q ss_pred             CCCeeeE--EeeCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           79 EQMYPLR--IFVGHK-QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        79 ~~~~~~~--~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ++.+...  ...++. ..+..+..+|++++|+..+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.  
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~--  364 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG--  364 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC--
Confidence            9876543  223333 356778889999999999999999999999999998887 5788999999999999998888  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCC-CEEEEEECCCCcEEEEEcCCCeEEEEEcCC------CcEEEEeeccCCCCEEEEE
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVS-PVLSIAFSPCGKYLASGGEDGLVLTHELTT------GRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~  228 (351)
                       +|.|.+||++...+++.+....+ .-+.++.++++.+||+|+..|.|.|||..+      .++++.+. .-...|+++.
T Consensus       365 -~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~  442 (514)
T KOG2055|consen  365 -TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQ  442 (514)
T ss_pred             -CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeeee
Confidence             99999999999998888864222 235677788999999999999999999653      23444432 2336799999


Q ss_pred             EcCCCCEEEEEeC--CCeEEEEeCCCCceee--------eeecceeEEecCCceeeeeeccceeeEEEee
Q psy519          229 WSVTGETLVTGSL--TGTVQFYGWPSASKIG--------IGVYPRCAAQPVGFEAATLAANSRVRTLREM  288 (351)
Q Consensus       229 ~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  288 (351)
                      |++|+++||.+|.  +..+++-.+++.....        ...+++++|||.+.++|++...+++..|++-
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999988876  6789999998876553        3677899999999999999999999888874

>KOG0772|consensus

Probab=99.96  E-value=1.5e-28  Score=204.65  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=197.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------cCCCccceEEEEECCCC--cEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------TSGHDMTVWSVEACSKG--LAL   65 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------~~~~~~~i~~~~~~~~~--~~~   65 (351)
                      .|+......|.+++|||+  |+.|++.+.....+++|....                 ..+|...++|-+|+|..  .++
T Consensus       208 ~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl  285 (641)
T KOG0772|consen  208 QLQPCETHQINSLQYSVT--GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL  285 (641)
T ss_pred             ccCcccccccceeeecCC--CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence            455556678999999999  998888888889999998765                 78999999999999986  459


Q ss_pred             EEeCCCcEEEEeCCCCe-eeEEee-----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce---eEEeccCCC--
Q psy519           66 TGSRDTTARLWSLEQMY-PLRIFV-----GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS---VRVFSDHVS--  134 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~-~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~--  134 (351)
                      +++.||++++||++..+ +...+.     +..-+++..+|+|+++.||+|+.||+|.+|+......   ...-..|..  
T Consensus       286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~  365 (641)
T KOG0772|consen  286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ  365 (641)
T ss_pred             EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence            99999999999998654 233332     3345788999999999999999999999999754322   223345665  


Q ss_pred             CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-eeEEecc--CCCCEEEEEECCCCcEEEEEcC------CCeEEEE
Q psy519          135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-SVRVFSD--HVSPVLSIAFSPCGKYLASGGE------DGLVLTH  205 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~  205 (351)
                      .|+|+.||++|++|++-+.   |+.+++||+++.+ ++....+  ...+-+.++|+|+.+++++|+.      .|.+.+|
T Consensus       366 ~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~  442 (641)
T KOG0772|consen  366 DITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF  442 (641)
T ss_pred             ceeEEEeccccchhhhccC---CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence            8999999999999999988   9999999999864 3333332  2234568899999999999864      5789999


Q ss_pred             EcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       206 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      |..+-..++.+.+. ...|..+.|+|.-+.|++|+.||.+++|--++.
T Consensus       443 d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~  489 (641)
T KOG0772|consen  443 DRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE  489 (641)
T ss_pred             eccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEECccc
Confidence            99999988888754 577999999999888999999999999865554

>KOG0301|consensus

Probab=99.96  E-value=1.6e-27  Score=205.07  Aligned_cols=269  Identities=21%  Similarity=0.281  Sum_probs=223.0

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEE-EEECC--CCcEEEEeCCCc
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWS-VEACS--KGLALTGSRDTT   72 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~-~~~~~--~~~~~~~~~d~~   72 (351)
                      +++..++|...|..+++.+.   ..++++++||++++|+-...       +.+|.+-|.. ++|.+  .+++++|+.|..
T Consensus         6 ls~~l~gH~~DVr~v~~~~~---~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG---VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eEEEeccCccchheeEecCC---eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            56788999999999998766   57899999999999998655       4456666666 66654  346799999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      +.+|.+.+..+...+.+|+..|.++....++. +++|+.|.++++|..  +++...+.+|+..|.+++.-|++ .+++|+
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs  158 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS  158 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence            99999999999999999999999999887776 899999999999975  55667799999999999999987 888888


Q ss_pred             cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC
Q psy519          153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT  232 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  232 (351)
                      .   |..|++|.-  ++.++++.+|...|+.+++-|++ .|++++.||.|++|++ ++..+.+.. .|..-+.++....+
T Consensus       159 a---DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  159 A---DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALS  230 (745)
T ss_pred             C---cceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCC
Confidence            8   999999984  78899999999999999998764 5788889999999999 777777764 67788999998888


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeecce-eEEecC---CceeeeeeccceeeEEEee
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKIGIGVYPR-CAAQPV---GFEAATLAANSRVRTLREM  288 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~s~~---~~~~~~~~~~~~~~~~~~~  288 (351)
                      +..++++++|++++||+..  +..+....+. ..|+..   ...++++++||.++++..-
T Consensus       231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            9999999999999999987  4444443333 233321   2357889999988776543

>KOG0294|consensus

Probab=99.96  E-value=1.3e-26  Score=182.11  Aligned_cols=235  Identities=18%  Similarity=0.291  Sum_probs=194.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT--YIGTGSYDKAVRLWSITD  122 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~  122 (351)
                      +..|.++|++++.  ++.+ ++|+.|-+|+|||+.+..+...+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+...
T Consensus        39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence            5689999999998  4677 9999999999999999999999999999999999998664  899999999999999999


Q ss_pred             CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeE
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  202 (351)
                      -+.+..+++|.+.|+.++.+|.+++.++.+.   |+.+++||+-+|+.-..+.- ......+.|+|.|.+++.+..+ .|
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~---D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i  191 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGG---DQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KI  191 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcC---CceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EE
Confidence            9999999999999999999999999999888   99999999998876555532 2334559999999999988876 48


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeE--EecCCceeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCA--AQPVGFEAAT  275 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~--~s~~~~~~~~  275 (351)
                      -+|.+.+......+..+  ..+.++.|- ++..|++|..|+.|.+||..+......     .++..+.  -.|.+.++++
T Consensus       192 ~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  192 DIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence            89999887766655432  456666664 577899999999999999998665543     4555554  3677889999


Q ss_pred             eeccceeeEEEeeeceeC
Q psy519          276 LAANSRVRTLREMHEIVG  293 (351)
Q Consensus       276 ~~~~~~~~~~~~~~~~~g  293 (351)
                      ++++|.   +++|+....
T Consensus       269 aSSDG~---I~vWd~~~~  283 (362)
T KOG0294|consen  269 ASSDGF---IKVWDIDME  283 (362)
T ss_pred             eccCce---EEEEEcccc
Confidence            999985   555655443

>KOG2106|consensus

Probab=99.96  E-value=2.9e-26  Score=190.68  Aligned_cols=288  Identities=22%  Similarity=0.236  Sum_probs=224.2

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC---
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM---   81 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~---   81 (351)
                      .++.|.|++|.++  |+ +++|.++|.|.||+....     ...|.+.|.++..-.+|.+++|+.|..|..||-.-.   
T Consensus       245 ekk~Vl~v~F~en--gd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  245 EKKFVLCVTFLEN--GD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             cceEEEEEEEcCC--CC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccc
Confidence            3478999999999  77 788999999999999776     448999999999999999999999999999983100   


Q ss_pred             -------------------------------------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           82 -------------------------------------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        82 -------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                                                           ......++|......++.+|+.+++++++.|+.+++|+  ..+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence                                                 00112346888899999999999999999999999999  444


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      +..... ...++.|+.|+|.| .++.|..   .|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|++
T Consensus       400 ~~wt~~-~~d~~~~~~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  400 LEWTKI-IEDPAECADFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             eeEEEE-ecCceeEeeccCcc-eEEEeec---cceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            444443 46789999999999 9999988   99999999998666665555 889999999999999999999999999


Q ss_pred             EEcCC-CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----------------------ee
Q psy519          205 HELTT-GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----------------------GV  260 (351)
Q Consensus       205 ~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----------------------~~  260 (351)
                      |-+.. ++........+..+|+.+.|++|+++|.+-+.|-.|.+|....-+....                       ..
T Consensus       474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~  553 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD  553 (626)
T ss_pred             EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence            98864 4555544434448999999999999999999999999994332221110                       22


Q ss_pred             cceeEEecCCceeeeeeccceeeEEE--------eeeceeCceEEEeeEEEEecCCce
Q psy519          261 YPRCAAQPVGFEAATLAANSRVRTLR--------EMHEIVGPVVVVESFIVEIRPDKW  310 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~  310 (351)
                      +..++-+.....+|++...+.++.++        ..+...|+...+.+  ++|..+..
T Consensus       554 i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~--V~Fl~~d~  609 (626)
T KOG2106|consen  554 INAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTN--VAFLCKDS  609 (626)
T ss_pred             HHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEE--EEEeeCCc
Confidence            23455566777788888888777665        23445566666666  66665543

>KOG0267|consensus

Probab=99.96  E-value=2.6e-29  Score=216.91  Aligned_cols=251  Identities=24%  Similarity=0.408  Sum_probs=224.7

Q ss_pred             ccEEEEecCCCceEEEecCCccCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCC
Q psy519           25 EDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI  103 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~  103 (351)
                      ..+++.......+++|+... ...|...+.++..-..++. ++|+.|..+-+|.+.....+..+.+|..+|.++.|+++.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~-~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E   82 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE-FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE   82 (825)
T ss_pred             ccccceeeeeeccccccchh-hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch
Confidence            55666666777788898765 4568888888887666677 899999999999998877777889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          104 TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       104 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                      .+|+.|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+.+.++.   |..+++||.+...+.+.+.+|...+..
T Consensus        83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt---dtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST---DTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc---cccceehhhhccCceeeecCCcceeEE
Confidence            99999999999999999999999999999999999999999999999888   999999999988899999999999999


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----  258 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----  258 (351)
                      +.|+|+|++++.+++|..++|||+..|+....|. .|...+..+.|+|..-+++.|+.|+++++||+++.+.+..     
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~  238 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET  238 (825)
T ss_pred             EeecCCCceeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc
Confidence            9999999999999999999999999999998886 5778999999999999999999999999999998777654     


Q ss_pred             eecceeEEecCCceeeeeeccc
Q psy519          259 GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       259 ~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ..+.+.+|+|++..+.++....
T Consensus       239 ~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  239 DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeecCCceeeecCchhh
Confidence            5667889999999877766654

>KOG0299|consensus

Probab=99.96  E-value=5.5e-27  Score=192.82  Aligned_cols=223  Identities=22%  Similarity=0.323  Sum_probs=191.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC-cEEEEeCCCcEEEEeCCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~vw~~~~~   81 (351)
                      .+|.+.+.+++.|||  |++||+|+.|..|.||+..+.     +.+|.+.|.+++|-... .+++++.|+.+++|+++..
T Consensus       199 ~~h~keil~~avS~D--gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSD--GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             ccccceeEEEEEcCC--CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            489999999999999  999999999999999999988     78999999999997654 5599999999999999999


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ..+.++.+|...|.+|....-++.+-+|+.|+++++|++.. +....+.++.+.+-|++|-. ...+++|+.   +|.|.
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSd---nG~Ia  351 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSD---NGSIA  351 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccC---CceEE
Confidence            88999999999999999888788888888999999999954 34455677888999999984 568899988   99999


Q ss_pred             EEEccCCceeEEecc------------CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC----cEEEEeeccCCCCEE
Q psy519          162 LWSITDGASVRVFSD------------HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG----RVISRFHLQEHEPVT  225 (351)
Q Consensus       162 i~d~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~  225 (351)
                      +|++.+.+++.....            +...|++++..|...++++|+.+|.|++|-+..+    +++..+  .-.+-|+
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l--s~~GfVN  429 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL--SLVGFVN  429 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec--ccccEEE
Confidence            999998887766431            1237899999999999999999999999999877    333333  4557899


Q ss_pred             EEEEcCCCCEEEEE
Q psy519          226 SLVWSVTGETLVTG  239 (351)
Q Consensus       226 ~~~~~~~~~~l~~~  239 (351)
                      +++|+++|+++++|
T Consensus       430 sl~f~~sgk~ivag  443 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAG  443 (479)
T ss_pred             EEEEccCCCEEEEe
Confidence            99999999977665

>KOG0639|consensus

Probab=99.95  E-value=1.9e-27  Score=197.61  Aligned_cols=231  Identities=23%  Similarity=0.343  Sum_probs=206.1

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      ..-|.++..+||  |..|++|+.-.++.|||+...       +....-.+.+++.+||.++ ++++.||.|.|||+.+..
T Consensus       465 dnyiRSckL~pd--grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPD--GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             ccceeeeEecCC--CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence            367889999999  999999999999999999876       3333356778999999999 999999999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      .++.|++|.+.+.||..++||..|.+|+.|.+|+-||+++++.+.... ..+.|.++.+.|++.++++|-.   ++.+.+
T Consensus       543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe---ns~vev  618 (705)
T KOG0639|consen  543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME---NSNVEV  618 (705)
T ss_pred             eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc---cCcEEE
Confidence            999999999999999999999999999999999999999998777654 5688999999999999999988   899998


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                      .... +.....+..|+.-|.++.|.+.|+++++.+.|+.+..|....|..+...  ...+.|.++.++.|.+++++|+.|
T Consensus       619 lh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  619 LHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             EecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec--cccCcceeeeeccCceEEEecCCC
Confidence            8864 4445667789999999999999999999999999999999888877654  556899999999999999999999


Q ss_pred             CeEEEEeC
Q psy519          243 GTVQFYGW  250 (351)
Q Consensus       243 g~i~i~~~  250 (351)
                      ....+|.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            98888865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.3e-24  Score=184.97  Aligned_cols=263  Identities=13%  Similarity=0.038  Sum_probs=198.4

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i   97 (351)
                      ++.+++++.|+.+++||+.+.     ...+ ..+.+++|+|++..  ++++.++.|++||..+++....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            357888899999999999766     3333 34678999999975  5677889999999999888776655443 5678


Q ss_pred             EEeCCCCEEEEE-eCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC-eEEEEEccCCceeEEec
Q psy519           98 RFHPKITYIGTG-SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFS  175 (351)
Q Consensus        98 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~-~i~i~d~~~~~~~~~~~  175 (351)
                      +|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|++++++++..   ++ .+.+||.++++......
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE---TTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEec---CCCeEEEEeCCCCeEEEEEE
Confidence            999999877655 5689999999998877776653 345688999999999998876   54 57788998877665543


Q ss_pred             cCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeeccCC------CCEEEEEEcCCCCEEEEE-eCCCeEEE
Q psy519          176 DHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVISRFHLQEH------EPVTSLVWSVTGETLVTG-SLTGTVQF  247 (351)
Q Consensus       176 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~-~~dg~i~i  247 (351)
                      . ...+..++|+|+++++++++ .++.|++||+++++.+..+.....      .....++|+|++++++++ ..++.+.+
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            3 23457899999999886554 589999999999887776543211      124578999999986553 45678999


Q ss_pred             EeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          248 YGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       248 ~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      ||..+++....    ..+..++|+|+|..++++..  ....+.+|+..+++..
T Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG--VSNDVSVIDVAALKVI  284 (300)
T ss_pred             EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC--CCCeEEEEECCCCcEE
Confidence            99998876643    34567899999998876542  2336888998887743

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283|consensus

Probab=99.95  E-value=9.6e-26  Score=175.83  Aligned_cols=271  Identities=21%  Similarity=0.279  Sum_probs=204.4

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------cCCCccceEEEEECCC--Cc
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------TSGHDMTVWSVEACSK--GL   63 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------~~~~~~~i~~~~~~~~--~~   63 (351)
                      +.+.|.+.|.++...|.+ |+++++|+.||.|.+||++..                    ..+|...|..+.|.|-  |-
T Consensus        38 ~~r~HgGsvNsL~id~te-grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTE-GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             eeccCCCccceeeecccc-ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            456788999999999964 899999999999999999875                    5678889999999884  56


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEE
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  140 (351)
                      +.+++.|.+++|||.++-+....|+ ..+.|..-+++|   ...++++|..+-.|++.|+.+|.....+.+|.+.|.++.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            6899999999999999988877775 456788888888   345888999999999999999999999999999999999


Q ss_pred             EccCCCEE-EEEecCCCCCeEEEEEccCC-ceeEE--------------eccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          141 FSPCGKYL-ASGGTGSYDKAVRLWSITDG-ASVRV--------------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       141 ~~~~~~~l-~~~~~~~~d~~i~i~d~~~~-~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      |+|...++ ++|+.   ||.|++||+|.. .+...              -..|.+.+..++|+.++.++++++.|..+++
T Consensus       196 Wsp~~e~vLatgsa---Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  196 WSPSSEWVLATGSA---DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             eccCceeEEEecCC---CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            99988775 56666   999999999864 22222              2357788999999999999999999999999


Q ss_pred             EEcCCCcEEEE-ee-ccCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceee
Q psy519          205 HELTTGRVISR-FH-LQEH---EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAA  274 (351)
Q Consensus       205 ~d~~~~~~~~~-~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~  274 (351)
                      |+..+|+.... +- ..+.   +.-..+. +.+...++.--.++.+.++++-+++.+..     ..+...++.|+-+...
T Consensus       273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  273 WNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF  351 (397)
T ss_pred             eecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence            99988753221 10 0011   1111122 22334444444457777777777766654     3344556666666666


Q ss_pred             eeecccee
Q psy519          275 TLAANSRV  282 (351)
Q Consensus       275 ~~~~~~~~  282 (351)
                      ++.-++.+
T Consensus       352 tg~~d~ni  359 (397)
T KOG4283|consen  352 TGDMNGNI  359 (397)
T ss_pred             ccccCCcc
Confidence            66555544

>KOG0267|consensus

Probab=99.95  E-value=2.2e-28  Score=211.18  Aligned_cols=228  Identities=25%  Similarity=0.421  Sum_probs=208.2

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      .|...+.++..-..  ++.+++|+.+..+.+|.....     +.+|..+|.++.|++...+ ++|+.+|+|++||++..+
T Consensus        26 ~hsaav~~lk~~~s--~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKS--SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhceeeeecc--ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            35666777776556  789999999999999998776     6899999999999999877 899999999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      .++++.+|...+..+.|+|-+.+.+.|+.|+.+++||++...+...+.+|...+..+.|+|+|.+++.++.   |..+++
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e---d~tvki  180 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE---DNTVKI  180 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---cceeee
Confidence            99999999999999999999999999999999999999988899999999999999999999999999998   999999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                      ||+..|+....|+.|++.+..+.|+|..-+++.|+.|+.+++||+++-+.+.... .....|.++.|+|++..+++|...
T Consensus       181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchh
Confidence            9999999999999999999999999999999999999999999999877776654 335789999999999999888665

>KOG1408|consensus

Probab=99.95  E-value=5.2e-26  Score=196.60  Aligned_cols=308  Identities=19%  Similarity=0.251  Sum_probs=239.3

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECC------------CCcEEEEeCCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACS------------KGLALTGSRDT   71 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~------------~~~~~~~~~d~   71 (351)
                      ....++.|+|.  .+.|.....|..+++||++..        ...|+..|+.+.-.|            .+-+++++.|+
T Consensus       325 PD~IA~~Fdet--~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~  402 (1080)
T KOG1408|consen  325 PDAIACQFDET--TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG  402 (1080)
T ss_pred             CceeEEEecCC--CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence            34578899999  899999999999999999876        556888888876544            45679999999


Q ss_pred             cEEEEeCCCCe---eeE----------------------------------EeeCCCCCeEEEEEeCCCCEEEEEeCCCc
Q psy519           72 TARLWSLEQMY---PLR----------------------------------IFVGHKQDVTCARFHPKITYIGTGSYDKA  114 (351)
Q Consensus        72 ~i~vw~~~~~~---~~~----------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  114 (351)
                      +|++|+++.+.   ..+                                  ..-.....+.+++.+|+|++|++|...|+
T Consensus       403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn  482 (1080)
T KOG1408|consen  403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN  482 (1080)
T ss_pred             cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence            99999987421   100                                  00113456899999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCeEEEEEcc---CCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCC
Q psy519          115 VRLWSITDGASVRVFSDHVSPVLSIAFSP---CGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCG  190 (351)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~  190 (351)
                      +++|++.+.+....+..|...|.|+.|+.   ..++|++++.   |+.|.+||.... ..++++.+|...|+++.|.-+|
T Consensus       483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr---dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR---DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC---CceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence            99999999998888999999999999986   3467888888   999999998654 5677888999999999998877


Q ss_pred             --cEEEEEcCCCeEEEEEcCC---CcEEEEe-eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------
Q psy519          191 --KYLASGGEDGLVLTHELTT---GRVISRF-HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------  258 (351)
Q Consensus       191 --~~l~~~~~dg~i~i~d~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------  258 (351)
                        ..+++++.|..|.+--.+.   +...... ....+..+..++..|..+++++++.|..|+||++++++..+.      
T Consensus       560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~  639 (1080)
T KOG1408|consen  560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD  639 (1080)
T ss_pred             CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence              6788999998775433321   2221111 111235789999999999999999999999999999998865      


Q ss_pred             --eecceeEEecCCceeeeeeccceeeEEEeeec-----eeCceEEEeeEEEEecCCceeeccEEEecCCccccce
Q psy519          259 --GVYPRCAAQPVGFEAATLAANSRVRTLREMHE-----IVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                        +....+..-|.|.++++.+++.++..+.+...     -.||.-.+..  +.|.+|-+-+... ..|..|-+|-+
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISv-sgDgCIFvW~l  712 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISV-SGDGCIFVWKL  712 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee--eeecccchhheee-cCCceEEEEEC
Confidence              44556888999999999999987776665432     3456556666  7888887755433 45666666665

>KOG2055|consensus

Probab=99.95  E-value=8e-26  Score=186.10  Aligned_cols=286  Identities=19%  Similarity=0.146  Sum_probs=223.9

Q ss_pred             CceEEEecCCc--cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC--CeeeEEeeCCCCCeEEEEEeCCCC-EEEE
Q psy519           35 KNLQSRYLPYY--TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ--MYPLRIFVGHKQDVTCARFHPKIT-YIGT  108 (351)
Q Consensus        35 ~~i~i~~~~~~--~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~i~~i~~~~~~~-~l~~  108 (351)
                      |++.+-.+...  .....+.|+++.|+|...+ ++++.|+++++|.+..  ...++.+.-...+|.+.+|.|+|. .+++
T Consensus       196 ~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~  275 (514)
T KOG2055|consen  196 GTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT  275 (514)
T ss_pred             ceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe
Confidence            44444444433  2233478999999999988 9999999999998863  345556666678999999999998 8999


Q ss_pred             EeCCCcEEEEeCCCCceeEEe--ccC-CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEE
Q psy519          109 GSYDKAVRLWSITDGASVRVF--SDH-VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA  185 (351)
Q Consensus       109 ~~~dg~i~i~d~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  185 (351)
                      ++....++.||+.+.+..+.-  .++ ...+..+..+|++++|+..+.   .|.|.+....+++.+..++ ..+.+..++
T Consensus       276 s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~eli~s~K-ieG~v~~~~  351 (514)
T KOG2055|consen  276 SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKELITSFK-IEGVVSDFT  351 (514)
T ss_pred             cccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhhhhhhhheee-eccEEeeEE
Confidence            999999999999887654332  222 245778899999999999999   9999999999999888885 467899999


Q ss_pred             ECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceee--
Q psy519          186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA------SKIG--  257 (351)
Q Consensus       186 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~------~~~~--  257 (351)
                      |+.|++.|++++.+|.|++||++...+++++.-...-.-+++|.++++.+||+|+..|.|.|||.++.      +++.  
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~  431 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV  431 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence            99999999999999999999999999998886544444577888899999999999999999997642      2222  


Q ss_pred             ---eeecceeEEecCCceeeeeecccee--e--------EEEeeeceeCceEEEeeEEEEecCCceeeccEEEecCCccc
Q psy519          258 ---IGVYPRCAAQPVGFEAATLAANSRV--R--------TLREMHEIVGPVVVVESFIVEIRPDKWYEANLIVLDDDLKE  324 (351)
Q Consensus       258 ---~~~~~~~~~s~~~~~~~~~~~~~~~--~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  324 (351)
                         ...+..+.|+|+++.+|.++.....  +        ++.-|....+....+.+  ++|+|.+-|.+.. ..+..+..
T Consensus       432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc--~aFSP~sG~lAvG-Ne~grv~l  508 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC--MAFSPNSGYLAVG-NEAGRVHL  508 (514)
T ss_pred             hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE--EEecCCCceEEee-cCCCceee
Confidence               2678899999999988766654432  1        33446666667777888  8999999887644 44555666


Q ss_pred             cce
Q psy519          325 CNL  327 (351)
Q Consensus       325 ~~~  327 (351)
                      |.+
T Consensus       509 ~kL  511 (514)
T KOG2055|consen  509 FKL  511 (514)
T ss_pred             Eee
Confidence            654

>KOG2106|consensus

Probab=99.95  E-value=7.1e-25  Score=182.49  Aligned_cols=262  Identities=18%  Similarity=0.182  Sum_probs=210.3

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM   81 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~   81 (351)
                      ++.|....|+|.  +.-|+.....+.+.+|+++.+         ......-|.|++|.++|..++|..+|.|.||+..+.
T Consensus       200 ne~v~~a~FHPt--d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~  277 (626)
T KOG2106|consen  200 NEVVFLATFHPT--DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN  277 (626)
T ss_pred             cceEEEEEeccC--CCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc
Confidence            356778999998  776666667789999999887         222347899999999999999999999999999888


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce------------------------------------
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS------------------------------------  125 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------------  125 (351)
                      +..+....|.+.|.+++...+|.++ +|+.|..|..||-. -+.                                    
T Consensus       278 ~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  278 RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            8777777999999999999998766 49999999999832 110                                    


Q ss_pred             -----eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          126 -----VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       126 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                           .....+|......++.+|+.+.+++++.   |+.+++|+  ..+..... ....+..++.|+|.| .++.|+..|
T Consensus       356 ~~~~f~~~v~gh~delwgla~hps~~q~~T~gq---dk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  356 LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ---DKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             ecCCceEEEEecccceeeEEcCCChhheeeccC---cceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccc
Confidence                 0112357778889999999999999999   99999999  34444333 346788999999999 999999999


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-------eeecceeEEecCCcee
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG-------IGVYPRCAAQPVGFEA  273 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-------~~~~~~~~~s~~~~~~  273 (351)
                      ...+.|.++...+.... . ..+++.+.|+|+|.+||.|+.|+.|++|.+......-       -.++..+.||+|++++
T Consensus       429 ~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL  506 (626)
T ss_pred             eEEEEecccceeEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence            99999998865555432 3 7899999999999999999999999999987543321       1677889999999988


Q ss_pred             eeeeccceeeEEEee
Q psy519          274 ATLAANSRVRTLREM  288 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~  288 (351)
                      .+-+-+-   .+-.|
T Consensus       507 ~~~S~d~---eiLyW  518 (626)
T KOG2106|consen  507 VSNSGDY---EILYW  518 (626)
T ss_pred             EeccCce---EEEEE
Confidence            7655543   44455

>KOG1539|consensus

Probab=99.95  E-value=9.8e-25  Score=191.60  Aligned_cols=318  Identities=18%  Similarity=0.221  Sum_probs=252.6

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCC-ccceEEEEECCCCcE--EEEeCCCcEEEEe
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGH-DMTVWSVEACSKGLA--LTGSRDTTARLWS   77 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~-~~~i~~~~~~~~~~~--~~~~~d~~i~vw~   77 (351)
                      +...++...|+++.-+|-  -+.+|.|..+|+|.++++...    ...| .++|+.++|..||..  ++++..|.+.+||
T Consensus       196 ~~f~~~~s~IT~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD  273 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD  273 (910)
T ss_pred             EEecccccceeEeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence            344567799999999999  999999999999999999887    3345 499999999999965  7888889999999


Q ss_pred             CCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEeccCCCCeEEEEEc-cCCCEEEEE
Q psy519           78 LEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG----ASVRVFSDHVSPVLSIAFS-PCGKYLASG  151 (351)
Q Consensus        78 ~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~~~  151 (351)
                      ++..+.+...+ .|.+.+....|.|....+++++.|..+++|-.+++    +.++.-.+|..|..|+.|. .+|..+.++
T Consensus       274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa  353 (910)
T KOG1539|consen  274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA  353 (910)
T ss_pred             cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence            99888776665 78899999999999999999999999888865543    3455556788888888887 567777777


Q ss_pred             ecCCCCCeEEEEEc-----------------------------------------------------------------c
Q psy519          152 GTGSYDKAVRLWSI-----------------------------------------------------------------T  166 (351)
Q Consensus       152 ~~~~~d~~i~i~d~-----------------------------------------------------------------~  166 (351)
                      +.   |++++.+++                                                                 +
T Consensus       354 ~~---Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  354 KQ---DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             cc---CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence            66   555555544                                                                 2


Q ss_pred             CCce-eEEe-----ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEe--eccCCCCEEEEEEcCCCCEEEE
Q psy519          167 DGAS-VRVF-----SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF--HLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       167 ~~~~-~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                      +... ...+     +.....+++++.++.|++.+.|+..|.|-+|++++|-....+  ...|..+|++++...-++.+++
T Consensus       431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs  510 (910)
T KOG1539|consen  431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS  510 (910)
T ss_pred             CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence            2211 1111     112256889999999999999999999999999999888877  2356789999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeee----------------------------------------------eecceeEEecCCce
Q psy519          239 GSLTGTVQFYGWPSASKIGI----------------------------------------------GVYPRCAAQPVGFE  272 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~~~----------------------------------------------~~~~~~~~s~~~~~  272 (351)
                      ++.+|.+++||......+..                                              ..++.+.|||||++
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW  590 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW  590 (910)
T ss_pred             ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence            99999999999987653321                                              45678999999999


Q ss_pred             eeeeeccceeeEEEeeeceeCceEEEee-----EEEEecCCceeeccEEEecCCccccceeee
Q psy519          273 AATLAANSRVRTLREMHEIVGPVVVVES-----FIVEIRPDKWYEANLIVLDDDLKECNLETY  330 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  330 (351)
                      +++++.|+   .++.||.++|+.+....     ..+.|+|++.|++..-.....|..|.-+..
T Consensus       591 lisasmD~---tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  591 LISASMDS---TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             EEEeecCC---cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            99999887   67888989988665443     236899999999888665577777765543

>KOG2048|consensus

Probab=99.95  E-value=9.7e-25  Score=187.60  Aligned_cols=253  Identities=17%  Similarity=0.246  Sum_probs=212.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc------c-CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------T-SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~-~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~   82 (351)
                      -+.+|.++|||..  .+.||.+-.+|.|.+|++...      + .+....|-+++|++.+++++.+.+|.|.-||+.+++
T Consensus        24 ~Ps~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   24 KPSEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eccceEEEEEecc--CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence            3578999999999  899999999999999999988      2 345678999999999999999999999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV--RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      +...+....+.|++++.+|.+..++.|+.||.++.++...++..  +.+...++.+.++.|+|++..++.|+.   ||.|
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~---Dg~I  178 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI---DGVI  178 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---CceE
Confidence            99999989999999999999999999999998888888776644  334556789999999999999999999   9999


Q ss_pred             EEEEccCCceeEEec-------c-CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC
Q psy519          161 RLWSITDGASVRVFS-------D-HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT  232 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  232 (351)
                      ++||..++..+....       . ...-|+++.|-.+ ..|++|...|.|.+||...+..++.+. -|...|.+++..++
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~  256 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADN  256 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCC
Confidence            999999988766221       1 2234667777644 578999999999999999999998876 56789999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce---------eeeeecceeEEecC
Q psy519          233 GETLVTGSLTGTVQFYGWPSASK---------IGIGVYPRCAAQPV  269 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~---------~~~~~~~~~~~s~~  269 (351)
                      ++++++++.|+.|.-|...+.+.         .+...+.+++..++
T Consensus       257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence            99999999999999988776633         12244455666655

>KOG2445|consensus

Probab=99.95  E-value=4.4e-25  Score=173.04  Aligned_cols=246  Identities=20%  Similarity=0.328  Sum_probs=192.2

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCC--CcE-EEEeCC
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSK--GLA-LTGSRD   70 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~--~~~-~~~~~d   70 (351)
                      +..+..+|..-|.++.|.+.  |+++|+++.|++++|||....         ...|.+.|..+.|.+-  |+. ++++.|
T Consensus         5 ~~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             ccccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            34678899999999999999  999999999999999997554         6789999999999764  566 999999


Q ss_pred             CcEEEEeCCC---------CeeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCcee------EEec---
Q psy519           71 TTARLWSLEQ---------MYPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASV------RVFS---  130 (351)
Q Consensus        71 ~~i~vw~~~~---------~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~---  130 (351)
                      +++.||+-..         .....++......|+.+.|.|  -|-.+++++.||.++||+....-.+      ..++   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9999998521         123445666778999999999  4678999999999999987643221      1222   


Q ss_pred             ----cCCCCeEEEEEcc---CCCEEEEEecCC--CCCeEEEEEccCC----ceeEEeccCCCCEEEEEECCC----CcEE
Q psy519          131 ----DHVSPVLSIAFSP---CGKYLASGGTGS--YDKAVRLWSITDG----ASVRVFSDHVSPVLSIAFSPC----GKYL  193 (351)
Q Consensus       131 ----~~~~~i~~~~~~~---~~~~l~~~~~~~--~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~l  193 (351)
                          .+..+..|+.|+|   ...+|++|+...  .-+.++||....+    ..+.++..|..+|+.++|.|+    -..|
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence                3556788999998   356788887410  0147899986553    345567789999999999994    2579


Q ss_pred             EEEcCCCeEEEEEcCCC--------------------cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          194 ASGGEDGLVLTHELTTG--------------------RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      |+++.|| |+||.++..                    +.+..+. .|.++|..+.|+-.|..|++.+.||.|++|...-
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999999 999998731                    1122222 4567999999999999999999999999998654

>KOG0269|consensus

Probab=99.95  E-value=6.1e-27  Score=203.80  Aligned_cols=237  Identities=20%  Similarity=0.317  Sum_probs=191.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEe
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWS   77 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~   77 (351)
                      .+..++...++  -..++.++. ..+.+|..+..            .+.....+..+.|... .++ ++++..|.|.+||
T Consensus        40 ~~~nAIs~nr~--~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   40 AKANAISVNRD--INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             cccceEeecCC--cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            45566777777  666666654 35777777665            1112234556777742 244 9999999999999


Q ss_pred             CCC---CeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEe
Q psy519           78 LEQ---MYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGG  152 (351)
Q Consensus        78 ~~~---~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  152 (351)
                      +..   .+.+..|..|...+.++.|++ ...+|++|+.||.|++||++..+...++.+....|+.++|+| .+..++++.
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            987   566678889999999999998 557899999999999999999999999988889999999999 677888888


Q ss_pred             cCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          153 TGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      .   .|.+++||+|.. +....+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+.-.........++..+.|-|
T Consensus       197 d---sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP  273 (839)
T KOG0269|consen  197 D---SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRP  273 (839)
T ss_pred             C---CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeecc
Confidence            8   999999999986 456678899999999999999999999999999999999876655555555668999999999


Q ss_pred             CCC-EEEEEeC--CCeEEEEeCCCCc
Q psy519          232 TGE-TLVTGSL--TGTVQFYGWPSAS  254 (351)
Q Consensus       232 ~~~-~l~~~~~--dg~i~i~~~~~~~  254 (351)
                      ... .|++++.  |-.|+|||++..-
T Consensus       274 ~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  274 ARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             CccchhhhhhccccceEEEEeecccc
Confidence            765 4566554  7889999998653

>KOG0646|consensus

Probab=99.95  E-value=9.8e-26  Score=185.81  Aligned_cols=240  Identities=22%  Similarity=0.317  Sum_probs=198.0

Q ss_pred             EEEEec-CCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEe-CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEE
Q psy519           27 VLANLE-SQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGS-RDTTARLWSLEQMYPLRIFVGHKQDVTCARF   99 (351)
Q Consensus        27 ~l~~~~-~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~   99 (351)
                      +++++. ....+.+|.+...     ...-.++|.+++-+|+|.++.++ ..+.|++|.+.+|..+..+..|-..|+++.|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence            444443 3346788888776     22346789999999999995555 9999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCC---------CCceeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCC
Q psy519          100 HPKITYIGTGSYDKAVRLWSIT---------DGASVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus       100 ~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      +-|+.+|++|+.||.|.+|++.         +-+++..+..|.-+|+++...+.  ..++++++.   |.++++||+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~---D~t~k~wdlS~g  208 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE---DRTIKLWDLSLG  208 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC---CceEEEEEeccc
Confidence            9999999999999999999873         34577888999999999998875  357899988   999999999999


Q ss_pred             ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc----------------EEEEeeccCCC--CEEEEEEc
Q psy519          169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR----------------VISRFHLQEHE--PVTSLVWS  230 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~--~v~~~~~~  230 (351)
                      ..+..+. ...++.+++.+|-+..+++|+++|.|.+.++....                .+..+. .|..  .|++++++
T Consensus       209 ~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  209 VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAIS  286 (476)
T ss_pred             eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEe
Confidence            8888874 46789999999999999999999999988875322                222232 3443  89999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCc
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGF  271 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~  271 (351)
                      -||.+|++|+.||.+.|||+.+.+.++.     .+++.+.+.|-..
T Consensus       287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            9999999999999999999999887754     5667777766533

>KOG0264|consensus

Probab=99.95  E-value=3.4e-26  Score=188.01  Aligned_cols=236  Identities=18%  Similarity=0.258  Sum_probs=183.0

Q ss_pred             CCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCe----------eeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCC
Q psy519           47 SGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMY----------PLRIFVGHKQDVTCARFHPK-ITYIGTGSYDK  113 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg  113 (351)
                      ..|.+.|+.+.+-|+...  ++.+..+.+.|||..+..          +-..+.+|...-.+++|++. .-.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            346777888888888754  667889999999986422          22367789887788999984 44788999999


Q ss_pred             cEEEEeCCCCc-------eeEEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEcc--CCceeEEeccCCCCEEE
Q psy519          114 AVRLWSITDGA-------SVRVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSIT--DGASVRVFSDHVSPVLS  183 (351)
Q Consensus       114 ~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~  183 (351)
                      .|++||+....       +...+.+|...|..++|++ +...+++++.   |+.+.|||+|  +.+......+|.+++.+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d---d~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD---DGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC---CCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            99999997533       3456788999999999999 5567778888   9999999999  55666777899999999


Q ss_pred             EEECC-CCcEEEEEcCCCeEEEEEcCCCcE-EEEeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcee----
Q psy519          184 IAFSP-CGKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPSASKI----  256 (351)
Q Consensus       184 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~----  256 (351)
                      ++|+| ++..||+|+.|++|.+||+|+... +..+. .|...|.++.|+|+ ...||+++.|+.+.+||+..-...    
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            99999 667899999999999999998654 44443 67789999999996 568899999999999998642111    


Q ss_pred             ---------------eeeecceeEEecCCce-eeeeeccceeeEEEeee
Q psy519          257 ---------------GIGVYPRCAAQPVGFE-AATLAANSRVRTLREMH  289 (351)
Q Consensus       257 ---------------~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~  289 (351)
                                     +...+..+.|+|.... +++++.++   .+.+|.
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~  402 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQ  402 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc---eEEEee
Confidence                           1245667788887775 44444443   445554

>KOG0300|consensus

Probab=99.95  E-value=6e-26  Score=178.82  Aligned_cols=253  Identities=22%  Similarity=0.317  Sum_probs=207.5

Q ss_pred             EEEEecCCCceEEEecCCccCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE
Q psy519           27 VLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY  105 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  105 (351)
                      .+++.-.++++. +.+...+.+|...|+.++-.....+ .+++.|.+.++|.+++++++..+.+|.+.|++++|++.+.+
T Consensus       126 rivssFk~~t~~-~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L  204 (481)
T KOG0300|consen  126 RIVSSFKDGTVK-FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLL  204 (481)
T ss_pred             hheeeecCCcee-EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccce
Confidence            455555566532 3333348899999999988766555 89999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeC------CCC----------------------------------ceeEEeccCCCCeEEEEEccCC
Q psy519          106 IGTGSYDKAVRLWSI------TDG----------------------------------ASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus       106 l~~~~~dg~i~i~d~------~~~----------------------------------~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                      +++++.|++..||..      ...                                  .++..+.+|...|.+..|-..|
T Consensus       205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg  284 (481)
T KOG0300|consen  205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG  284 (481)
T ss_pred             EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence            999999999999972      110                                  1345677899999999999999


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc-EEEEeeccCCCCE
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR-VISRFHLQEHEPV  224 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v  224 (351)
                      +.+++++-   |.+..+||+++++.+..+.+|....+.++-+|..+++++++.|-..++||++..- .+..|. .|...|
T Consensus       285 ~Q~vTaSW---DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtV  360 (481)
T KOG0300|consen  285 QQMVTASW---DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTV  360 (481)
T ss_pred             ceeeeeec---cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccce
Confidence            99999998   9999999999999999999999999999999999999999999999999998543 333443 667899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eee----eecceeEEecCCceeeeeeccceeeEE
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSASK-IGI----GVYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      +++.|..+. .+++|+.|.+|++||+++... +..    .++++++++-.+..++.--.+..++.+
T Consensus       361 TS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  361 TSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             eEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEE
Confidence            999998765 588999999999999988642 322    567788888877777666555444433

>KOG0269|consensus

Probab=99.95  E-value=7.1e-27  Score=203.40  Aligned_cols=237  Identities=20%  Similarity=0.327  Sum_probs=196.8

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCee
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      +..|.|+.. ..++||+++..|.|.+||+...        +..|...++++.|++.. .+ ++|+.||.|++||++..+.
T Consensus        90 ~~DVkW~~~-~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   90 AADVKWGQL-YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             hhhcccccc-hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            344788853 2689999999999999999983        78899999999999876 33 9999999999999999988


Q ss_pred             eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ..++.+..+.|+.++|+| .+..++++...|.+++||++... +...+..|.++|.|+.|+|++.+||+|+.   |+.|+
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR---DK~vk  245 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR---DKMVK  245 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC---CccEE
Confidence            888988899999999999 56789999999999999998754 56778889999999999999999999998   99999


Q ss_pred             EEEccCCceeEEec-cCCCCEEEEEECCCCc-EEEEEcC--CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-CCCEE
Q psy519          162 LWSITDGASVRVFS-DHVSPVLSIAFSPCGK-YLASGGE--DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-TGETL  236 (351)
Q Consensus       162 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  236 (351)
                      |||+.+++...... ....++.++.|-|... .|++++.  |-.|+|||++..-........|...++.++|.. |...|
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence            99998664332222 2356899999999765 5666553  778999999988776665567778899999976 45678


Q ss_pred             EEEeCCCeEEEEeCCCCc
Q psy519          237 VTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~  254 (351)
                      .+++.||.|..-.+++..
T Consensus       326 ~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  326 WSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             EeecCccHHHHhhhhccc
Confidence            899999998776666543

>KOG4328|consensus

Probab=99.95  E-value=1.2e-25  Score=184.87  Aligned_cols=269  Identities=13%  Similarity=0.143  Sum_probs=209.2

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCC--cEEEEeCCCcEEEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG--LALTGSRDTTARLW   76 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw   76 (351)
                      +-+..+|++++|+|.+..+++|+|+..|+|-+||+...         ...|..+|.++.|+|.+  ++++.+.||+|+.-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            44778999999999854578999999999999999532         77899999999999987  45899999999999


Q ss_pred             eCCCCeeeEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eEEeccCCCCeEEEEEccC-CCEEEEEe
Q psy519           77 SLEQMYPLRIFVG--HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSPC-GKYLASGG  152 (351)
Q Consensus        77 ~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~  152 (351)
                      |+++......+..  ....+..+.|+.+...++.+..=|...+||++++.. ...+..|...|.+++++|. ..++++++
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s  342 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS  342 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence            9987654333332  445567788888777788888778999999998765 5666678889999999995 45688888


Q ss_pred             cCCCCCeEEEEEccCCce----eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC----CCcEEEEeeccCC---
Q psy519          153 TGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT----TGRVISRFHLQEH---  221 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~---  221 (351)
                      .   |++.+|||+|.-..    +.....|...|.+..|+|++-.|++.+.|..|+|||..    .-.....+...+.   
T Consensus       343 ~---D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R  419 (498)
T KOG4328|consen  343 L---DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR  419 (498)
T ss_pred             c---CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence            8   99999999986422    23334799999999999988779999999999999983    2233333321111   


Q ss_pred             -CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eec-ceeEEecCCceeeeeecc
Q psy519          222 -EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVY-PRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       222 -~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~-~~~~~s~~~~~~~~~~~~  279 (351)
                       -......|.|+..++++|..-..|-|||-..++.+..      ..+ ....|+|.+..+++++..
T Consensus       420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence             2356679999999999999999999999988886654      122 235889988855555444

>KOG1539|consensus

Probab=99.95  E-value=2.1e-24  Score=189.59  Aligned_cols=272  Identities=18%  Similarity=0.281  Sum_probs=220.5

Q ss_pred             ccceEEeeecCCcccc-EEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC--
Q psy519           11 HKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ--   80 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~--   80 (351)
                      .++|+++.|.-|  |. .+|+|+..|.+.+||++..      ...|.+.|....|.|...+ ++++.|+.+++|=.++  
T Consensus       244 ~g~VtslSFrtD--G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d  321 (910)
T KOG1539|consen  244 WGRVTSLSFRTD--GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD  321 (910)
T ss_pred             ccceeEEEeccC--CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence            589999999999  76 5677777899999999988      5578899999999998877 9999999998885553  


Q ss_pred             C--eeeEEeeCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCC----------------------------------
Q psy519           81 M--YPLRIFVGHKQDVTCARFH-PKITYIGTGSYDKAVRLWSITDG----------------------------------  123 (351)
Q Consensus        81 ~--~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~----------------------------------  123 (351)
                      |  +.++.-.+|..+..+++|. .++..+.+++.|++++.+++...                                  
T Consensus       322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f  401 (910)
T KOG1539|consen  322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF  401 (910)
T ss_pred             CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence            3  3455667899999999997 57888899988888777765311                                  


Q ss_pred             -------------------------------ce-eEEe-----ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519          124 -------------------------------AS-VRVF-----SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus       124 -------------------------------~~-~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                                                     .. ...+     +.....+++++.++-|++.+.|+.   .|.|.+|+++
T Consensus       402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S---~G~Id~fNmQ  478 (910)
T KOG1539|consen  402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS---KGTIDRFNMQ  478 (910)
T ss_pred             ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc---CCeEEEEEcc
Confidence                                           00 0001     012256788999999999999998   9999999999


Q ss_pred             CCceeEEe---ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee--------------------------
Q psy519          167 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH--------------------------  217 (351)
Q Consensus       167 ~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------  217 (351)
                      +|-....+   ..|..+|+.++...-++.+++++.+|.+++||......+..+.                          
T Consensus       479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence            99888888   5899999999998888899999999999999997654332221                          


Q ss_pred             --------------ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeecc
Q psy519          218 --------------LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       218 --------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~  279 (351)
                                    ..|...|+.++|||||++|++++.|++|++||++++..+..    .+...+.+||+|.+||+...+
T Consensus       559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence                          13557899999999999999999999999999999998865    566789999999999999888


Q ss_pred             ceeeEEEeee
Q psy519          280 SRVRTLREMH  289 (351)
Q Consensus       280 ~~~~~~~~~~  289 (351)
                      ...  +.+|.
T Consensus       639 ~~g--IylWs  646 (910)
T KOG1539|consen  639 QNG--IYLWS  646 (910)
T ss_pred             Cce--EEEEE
Confidence            542  44554

>KOG0268|consensus

Probab=99.95  E-value=8.4e-27  Score=186.40  Aligned_cols=274  Identities=19%  Similarity=0.222  Sum_probs=222.2

Q ss_pred             cCCCccceEEEEECCCC--cEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      +.+|.+.|.+++=+|..  .+++|+.||.|++||+.+..+...++.|.+.|.+|++..  ..+++++.|.+|+.|.+.. 
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-  138 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-  138 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence            77999999999999987  339999999999999999999999999999999999986  6788899999999999865 


Q ss_pred             ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeE
Q psy519          124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLV  202 (351)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  202 (351)
                      .+..++. ..+.+..+.-+..+..+++++.     .|.|||.+...++..+.-....|.++.|+|-. .+|+++..|+.|
T Consensus       139 ~p~~til-g~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  139 PPLHTIL-GKSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             Ccceeee-ccccccccccccccccccccCc-----eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            4666665 3566777888778888999865     89999999889999998888899999999955 577777799999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------eeeecceeEEecCCceeeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI------GIGVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~  276 (351)
                      .+||++.+.+++.+..  ...-+.++|+|.+-.+++|++|..++.||++..+..      +...+..+.|||.|+.++++
T Consensus       213 vLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             EEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            9999999999988754  345689999998778899999999999999876433      23677889999999999988


Q ss_pred             eccceeeEEEeeeceeCceE---------EEeeEEEEecCCceeeccEEEecCCccccceeeeeeeeec
Q psy519          277 AANSRVRTLREMHEIVGPVV---------VVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPV  336 (351)
Q Consensus       277 ~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  336 (351)
                      +.|..   |+++....|+.-         .+.+  +.++.|..|.... ..+.+++.|-..+.....++
T Consensus       291 syDks---IRIf~~~~~~SRdiYhtkRMq~V~~--Vk~S~Dskyi~SG-Sdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  291 SYDKS---IRIFPVNHGHSRDIYHTKRMQHVFC--VKYSMDSKYIISG-SDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             cccce---EEEeecCCCcchhhhhHhhhheeeE--EEEeccccEEEec-CCCcceeeeecchhhhcCCC
Confidence            88765   555554444321         2333  7899999887543 45667888877666555444

>KOG1332|consensus

Probab=99.95  E-value=2.8e-26  Score=174.23  Aligned_cols=237  Identities=22%  Similarity=0.266  Sum_probs=189.3

Q ss_pred             CCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC---eeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeC
Q psy519           47 SGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM---YPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~  120 (351)
                      ..|.+.|..+...--|+. +|++.|++|+|+..+..   +.+.++.+|.+++..++|-.  .|.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            468888888877777766 99999999999999754   45778899999999999955  7899999999999999998


Q ss_pred             CCCce--eEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCC---ceeEEeccCCCCEEEEEECCC---C
Q psy519          121 TDGAS--VRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPC---G  190 (351)
Q Consensus       121 ~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~  190 (351)
                      .+++-  ......|...|++++|.|.  |-.|++++.   ||.|.+.+.+..   ...+....|.-.+++++|.|.   |
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS---DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS---DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeC---CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            87753  3445679999999999995  567888888   999999998764   233445679999999999994   4


Q ss_pred             -----------cEEEEEcCCCeEEEEEcCCCcEEEEe-eccCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCc
Q psy519          191 -----------KYLASGGEDGLVLTHELTTGRVISRF-HLQEHEPVTSLVWSVTG----ETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       191 -----------~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~~~~~~~  254 (351)
                                 +.|++|+.|..|+||+..+++-.... ...|..-|+.++|.|.-    ..||+++.||++.||......
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                       57999999999999999876432221 22566889999999953    479999999999999876321


Q ss_pred             ------eeee--eecceeEEecCCceeeeeeccceeeEEE
Q psy519          255 ------KIGI--GVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       255 ------~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                            ++..  ..+.++.||+.|..|++...+..+..++
T Consensus       245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence                  1111  3467899999999999988887655444

>KOG0308|consensus

Probab=99.95  E-value=6.1e-26  Score=194.09  Aligned_cols=239  Identities=17%  Similarity=0.219  Sum_probs=207.6

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEE-CCCCcE-EEEeCCCcEEEEeC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEA-CSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~-~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ..|..-|..++...+  ++.|++++.|.+|++|+....       +..|..-|.|+++ .++..+ ++|+-|+.|.+||+
T Consensus        70 e~HsDWVNDiiL~~~--~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGN--GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhHhHHhhHHhhcC--CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            347788888888888  999999999999999998876       6789999999999 666666 99999999999999


Q ss_pred             CCCe--eeE--------Eee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           79 EQMY--PLR--------IFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        79 ~~~~--~~~--------~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      +++.  .+.        .+. ++..+|.+++.++.|..|++|+..+.+++||.++.+.+..+++|...|+++..++||..
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTR  227 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCe
Confidence            9762  222        222 78889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL  227 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  227 (351)
                      +++++.   ||+|++||+...+++.++..|...++++..+|+=..+++|+.||.|..=|+++......+. ....+|..+
T Consensus       228 ~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l  303 (735)
T KOG0308|consen  228 LLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKL  303 (735)
T ss_pred             EeecCC---CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhh
Confidence            999999   9999999999999999999999999999999999999999999999999999854333332 455678888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ..+.+.+-+-+++.|+.|+-|..+-
T Consensus       304 ~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  304 HLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             hhccccCCceeeeccccceecCCcc
Confidence            8876555556777899999997653

>KOG0646|consensus

Probab=99.95  E-value=1.6e-25  Score=184.64  Aligned_cols=217  Identities=21%  Similarity=0.278  Sum_probs=191.1

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC-----
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE-----   79 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~-----   79 (351)
                      +++|.+++-+|+  |.+|+.|+-.|.+++|.+.++     +.+|-..|+|+.|+.||.+ ++|+.||.|.+|.+.     
T Consensus        81 Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASSNL--GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecCCC--ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            478999999999  999999999999999999999     7889999999999999988 999999999999863     


Q ss_pred             ----CCeeeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           80 ----QMYPLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        80 ----~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                          +-++...+..|.-+|+.+...+.  ..++++++.|.++++||+..+..+.++. .+..+.+++.+|.+..+++|+.
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence                34677888999999999988764  3589999999999999999999888876 5788999999999999999999


Q ss_pred             CCCCCeEEEEEccCC----------------ceeEEeccCCC--CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          154 GSYDKAVRLWSITDG----------------ASVRVFSDHVS--PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~----------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                         +|.|.+.++...                ..+..+.+|..  +|++++.+-||..|++|+.||.+.+||+.+.+++++
T Consensus       238 ---~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  238 ---EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             ---cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence               999999887532                23455667887  999999999999999999999999999999999987


Q ss_pred             eeccCCCCEEEEEEcCCCC
Q psy519          216 FHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       216 ~~~~~~~~v~~~~~~~~~~  234 (351)
                      +. ...++|+.+.+.|-.+
T Consensus       315 l~-~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  315 LQ-TSKGPVTNLQINPLER  332 (476)
T ss_pred             Hh-hhccccceeEeecccc
Confidence            74 2568899999977544

>KOG1408|consensus

Probab=99.95  E-value=1.2e-25  Score=194.32  Aligned_cols=236  Identities=19%  Similarity=0.317  Sum_probs=203.1

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC---cE-EEEeCCCcEEEEeCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG---LA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~---~~-~~~~~d~~i~vw~~~~   80 (351)
                      ....+.+++.||+  |++||+|..-|++++|++...     ...|...|.|+.|+...   ++ ++++.|..|+|||+..
T Consensus       458 ~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cccceEEEEECCC--cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            3567899999999  999999999999999999887     77899999999998642   44 9999999999999974


Q ss_pred             -CeeeEEeeCCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCC-CceeEEec-----cCCCCeEEEEEccCCCEEEEE
Q psy519           81 -MYPLRIFVGHKQDVTCARFHPKI--TYIGTGSYDKAVRLWSITD-GASVRVFS-----DHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        81 -~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~-~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~  151 (351)
                       ...++++.+|...|+++.|-.+|  ..+++++.|..|.+ +... ......+.     .....++.|+..|..++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence             45678889999999999998876  67889999988754 4332 11111221     124678999999999999999


Q ss_pred             ecCCCCCeEEEEEccCCceeEEecc---CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFSD---HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                      +.   |..|+|||+.+++..+.|++   |++....+...|.|.|+++.+.|.++.++|..+++++.+.. .|...|+.+.
T Consensus       615 cQ---Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~k  690 (1080)
T KOG1408|consen  615 CQ---DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVK  690 (1080)
T ss_pred             ec---ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeee
Confidence            99   99999999999999999875   66778889999999999999999999999999999998875 6778999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      |.+|-+.|++.+.||.|.||.++.
T Consensus       691 F~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ecccchhheeecCCceEEEEECch
Confidence            999999999999999999999875

>KOG1273|consensus

Probab=99.94  E-value=5e-25  Score=173.35  Aligned_cols=270  Identities=19%  Similarity=0.165  Sum_probs=205.8

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      ..|+.|++.  |.+||.|..+|.|.|||+.+.     +.+|..+|.+++|+++|++ ++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~--G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRW--GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccC--cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            689999999  999999999999999999987     8899999999999999988 99999999999999999988887


Q ss_pred             eCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEecc----CCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           88 VGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      . ...+|+...|+|... ..++.-.+..-.+-++..++....-..    ......+..|.+.|+++++|..   .|.+.+
T Consensus       104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts---KGkllv  179 (405)
T KOG1273|consen  104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS---KGKLLV  179 (405)
T ss_pred             E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC---cceEEE
Confidence            5 578999999999443 333333444455555554221111111    1112233468999999999998   999999


Q ss_pred             EEccCCceeEEeccCC-CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC-------cEEEEee---ccCCCCEEEEEEcC
Q psy519          163 WSITDGASVRVFSDHV-SPVLSIAFSPCGKYLASGGEDGLVLTHELTTG-------RVISRFH---LQEHEPVTSLVWSV  231 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~---~~~~~~v~~~~~~~  231 (351)
                      ||..+.+++..++-.. ..|..+.++..|++|+.-+.|..|+.|+++.-       +.....+   .-...+-.+++|+.
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            9999999888887655 78999999999999999999999999998631       1110000   01113457789999


Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCceeeeee------cceeEEecCCceeeeeeccceeeEEEeeeceeC
Q psy519          232 TGETLVTGSL-TGTVQFYGWPSASKIGIGV------YPRCAAQPVGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       232 ~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +|.++++++. -..++||.-..|.+++...      ...+.|.|-...++...+ |   ++.+|....-
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s-g---~v~iw~~~~~  324 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS-G---VVYIWAVVQV  324 (405)
T ss_pred             CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC-C---ceEEEEeecc
Confidence            9999988775 4679999999999887633      345789998888877733 3   4556654443

>KOG0301|consensus

Probab=99.94  E-value=4.4e-25  Score=190.16  Aligned_cols=230  Identities=23%  Similarity=0.332  Sum_probs=197.6

Q ss_pred             CCCccceEE-eeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC
Q psy519            8 HGDHKHFIQ-NSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         8 ~~~~~~v~~-~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~   81 (351)
                      .+|.+-|.. ++|-+. .+-+|++|+.|+.|.+|.....     +.+|...|.++....++.+++|+.|.+++||...  
T Consensus        54 ~~~~g~i~~~i~y~e~-~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--  130 (745)
T KOG0301|consen   54 EGPKGFIANSICYAES-DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--  130 (745)
T ss_pred             ccCcceeeccceeccc-cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--
Confidence            345555555 777763 1567999999999999999887     8899999999998888889999999999999874  


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +....+++|...|++++.-|+. .+++|+.|.+|++|.-  ++.++++.+|.+-|+.+++-+++ .+++++.   ||.|+
T Consensus       131 ~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsN---Dg~Ir  203 (745)
T KOG0301|consen  131 ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSN---DGSIR  203 (745)
T ss_pred             hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecC---CceEE
Confidence            4555689999999999999987 8889999999999984  78899999999999999999765 4666777   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +|++ +++.+.++.+|..-++++...+++..++++++|++++||+..  .+.+.+.++ ...+.++.+-++|. +++|+.
T Consensus       204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEecc
Confidence            9998 788999999999999999988899999999999999999975  677777533 34789998888887 678888


Q ss_pred             CCeEEEEeCCC
Q psy519          242 TGTVQFYGWPS  252 (351)
Q Consensus       242 dg~i~i~~~~~  252 (351)
                      ||.|+||....
T Consensus       279 DG~VrVfT~~k  289 (745)
T KOG0301|consen  279 DGRVRVFTVDK  289 (745)
T ss_pred             CceEEEEEecc
Confidence            99999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1e-23  Score=179.42  Aligned_cols=237  Identities=12%  Similarity=0.030  Sum_probs=180.8

Q ss_pred             ceEEeeecCCccccEE-EEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeee
Q psy519           13 HFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~   84 (351)
                      .+..++|+|+  ++.+ ++++.++.|++|+....     ...+ ..+..++|+|+++.  ++++.++.+++||+.+.+.+
T Consensus        32 ~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~  108 (300)
T TIGR03866        32 RPRGITLSKD--GKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL  108 (300)
T ss_pred             CCCceEECCC--CCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence            3577999999  9876 56678899999998876     2222 33567899999975  44566899999999988877


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe-cCCCCCeEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDK-AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG-TGSYDKAVRL  162 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~d~~i~i  162 (351)
                      ..+.. ...+.+++|+|+++.++++..++ .+..||..+++...... ......+++|+|+++++++++ .   ++.|++
T Consensus       109 ~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~---~~~v~i  183 (300)
T TIGR03866       109 AEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI---GGTVSV  183 (300)
T ss_pred             eEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC---CCEEEE
Confidence            76653 33467899999999999888765 46778998877665543 234457899999999886543 4   899999


Q ss_pred             EEccCCceeEEeccCC-------CCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          163 WSITDGASVRVFSDHV-------SPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      ||+++++.+..+..+.       .....++|+|++++++++ ..++.+.+||+++++....+.  +...+.+++|+|+++
T Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~  261 (300)
T TIGR03866       184 IDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEK  261 (300)
T ss_pred             EEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCC
Confidence            9999987766654221       123468899999986554 456789999999888776553  345789999999999


Q ss_pred             EEEEE-eCCCeEEEEeCCCCceeeee
Q psy519          235 TLVTG-SLTGTVQFYGWPSASKIGIG  259 (351)
Q Consensus       235 ~l~~~-~~dg~i~i~~~~~~~~~~~~  259 (351)
                      +|+++ ..+|.|.+||+.+++.+...
T Consensus       262 ~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       262 YLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            99886 45899999999998876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647|consensus

Probab=99.94  E-value=1.6e-24  Score=169.44  Aligned_cols=259  Identities=15%  Similarity=0.160  Sum_probs=199.0

Q ss_pred             CCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCC-Ceee-EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy519           47 SGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQ-MYPL-RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD  122 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  122 (351)
                      ....+.|.+++|+|.. .+ ++++.|++||+|+++. +..+ +....|.+++.+++|+.||..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            3567889999999944 44 6899999999999986 3332 34457899999999999999999999999999999999


Q ss_pred             CceeEEeccCCCCeEEEEEccCCC--EEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      ++ +..+..|.++|.++.|-+...  .|++|+-   |.+|+.||+|...++.++.- ...++++..  -...++++..+.
T Consensus       104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW---DKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r  176 (347)
T KOG0647|consen  104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSW---DKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAER  176 (347)
T ss_pred             CC-eeeeeecccceeEEEEecCCCcceeEeccc---ccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCC
Confidence            94 556667999999999988665  7889888   99999999999998888754 345665544  356788888999


Q ss_pred             eEEEEEcCCCcEEE-EeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------e--------eeecce
Q psy519          201 LVLTHELTTGRVIS-RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI--------G--------IGVYPR  263 (351)
Q Consensus       201 ~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~--------~--------~~~~~~  263 (351)
                      .|.+|+++++.... ....+-.-.+++++..+|....+.|+-+|++.+..+..+...        +        .-.+++
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            99999998765433 233333457899999999888899999999999998875221        1        245678


Q ss_pred             eEEecCCceeeeeeccceeeEEEeeecee--------CceEEEeeEEEEecCCceeeccEEE
Q psy519          264 CAAQPVGFEAATLAANSRVRTLREMHEIV--------GPVVVVESFIVEIRPDKWYEANLIV  317 (351)
Q Consensus       264 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~  317 (351)
                      ++|+|....++++++||   ++.+||...        .+...+.+  -.|..+|.+.+-.+.
T Consensus       257 i~FhP~hgtlvTaGsDG---tf~FWDkdar~kLk~s~~~~qpItc--c~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDG---TFSFWDKDARTKLKTSETHPQPITC--CSFNRNGSIFAYALG  313 (347)
T ss_pred             eEeecccceEEEecCCc---eEEEecchhhhhhhccCcCCCccce--eEecCCCCEEEEEee
Confidence            99999999999999988   566666422        12223333  357777776544433

>KOG0302|consensus

Probab=99.94  E-value=4.5e-25  Score=177.39  Aligned_cols=235  Identities=23%  Similarity=0.328  Sum_probs=185.6

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------------------cCCCccceEEEEECC--CCc
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------------------TSGHDMTVWSVEACS--KGL   63 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------------~~~~~~~i~~~~~~~--~~~   63 (351)
                      ..+|.+.+..+.-++-....+.|+-+..|.|+||++...                     +.+|...=+.++|+|  .|.
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            456778888888887611345666678899999998765                     667888889999999  567


Q ss_pred             EEEEeCCCcEEEEeCCCCeee---EEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCce--eEEeccCCCCeE
Q psy519           64 ALTGSRDTTARLWSLEQMYPL---RIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGAS--VRVFSDHVSPVL  137 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~  137 (351)
                      +++|..-+.|++|...++.-.   ..+.+|...|-.++|+|. ...|++++.||+|+|||++.+..  ....+.|.+.|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            788888899999999886532   345679999999999994 46889999999999999998832  222377999999


Q ss_pred             EEEEccCCCEEEEEecCCCCCeEEEEEccC---CceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcE-
Q psy519          138 SIAFSPCGKYLASGGTGSYDKAVRLWSITD---GASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRV-  212 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-  212 (351)
                      .+.|+..-.+|++|+.   ||.++|||+|+   ++++..++-|..+|+++.|+| +...|++++.|.+|.+||+.-..- 
T Consensus       307 VISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~  383 (440)
T KOG0302|consen  307 VISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE  383 (440)
T ss_pred             eEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence            9999998889999998   99999999986   567889999999999999999 557888899999999999853211 


Q ss_pred             --------------E--EEeeccCCCCEEEEEEcCC-CCEEEEEeCCCe
Q psy519          213 --------------I--SRFHLQEHEPVTSLVWSVT-GETLVTGSLTGT  244 (351)
Q Consensus       213 --------------~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  244 (351)
                                    .  ..|.......+..+.|++. ..++++.+.||-
T Consensus       384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                          0  1111123356888899885 346777777764

>KOG2096|consensus

Probab=99.94  E-value=2.4e-24  Score=169.81  Aligned_cols=258  Identities=20%  Similarity=0.242  Sum_probs=191.8

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee-----eEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEE
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP-----LRIFVGHKQDVTCARFHPKITYIGTGSY-DKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~  118 (351)
                      +.+|...|++++|+.||+. ++++.|+.|++|++++...     ++.- -.-+..+.+.|.||.+.++.... ..++++|
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            8899999999999999988 9999999999999986432     1111 11224578999999876655544 4579999


Q ss_pred             eCCCC---cee---------EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEE
Q psy519          119 SITDG---ASV---------RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF  186 (351)
Q Consensus       119 d~~~~---~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  186 (351)
                      .+...   ...         ..-+.|.-.+..+-....+.+|++++.   |..|.+|+++ |+.+..+......-+..+.
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~---dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL---DTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC---CCcEEEEecC-Cceeeeeccccccccceee
Confidence            76422   111         111335667777777778899999998   9999999998 8888888776677778899


Q ss_pred             CCCCcEEEEEcCCCeEEEEEcCC---C-----cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----
Q psy519          187 SPCGKYLASGGEDGLVLTHELTT---G-----RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA-----  253 (351)
Q Consensus       187 ~~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-----  253 (351)
                      +|+|+++++++-.-.|++|.+--   |     .....+. .|...|..++|+++...+++.+.||.+++||..-.     
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence            99999999999888899998632   2     1222332 45588999999999999999999999999998632     


Q ss_pred             --ceeee---------eecceeEEecCCceeeeeeccceeeEEEeeeceeCce---------EEEeeEEEEecCCceeec
Q psy519          254 --SKIGI---------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPV---------VVVESFIVEIRPDKWYEA  313 (351)
Q Consensus       254 --~~~~~---------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~  313 (351)
                        +.++.         ....++..+|.|..+++....    .++++..+.|+.         ..+.+  +.|+++|+|..
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs----~l~~~~se~g~~~~~~e~~h~~~Is~--is~~~~g~~~a  389 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS----DLKVFASEDGKDYPELEDIHSTTISS--ISYSSDGKYIA  389 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC----ceEEEEcccCccchhHHHhhcCceee--EEecCCCcEEe
Confidence              11121         223378999999988765543    466666666542         22333  68999999987


Q ss_pred             cE
Q psy519          314 NL  315 (351)
Q Consensus       314 ~~  315 (351)
                      .+
T Consensus       390 tc  391 (420)
T KOG2096|consen  390 TC  391 (420)
T ss_pred             ee
Confidence            77

>KOG0270|consensus

Probab=99.94  E-value=5.2e-25  Score=180.52  Aligned_cols=229  Identities=17%  Similarity=0.198  Sum_probs=182.4

Q ss_pred             ccEEEEecCCCceEEEecCCc--------------------------cCCCccceEEEEECCCC--cEEEEeCCCcEEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY--------------------------TSGHDMTVWSVEACSKG--LALTGSRDTTARLW   76 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~--------------------------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw   76 (351)
                      |+++|.|+.+..|.|||+.-.                          ..+|+..|..++|+..-  .+++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            679999999999999998754                          23688899999998764  34999999999999


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEEEecC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASGGTG  154 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~  154 (351)
                      |+.++++...+..|...|.++.|+| ....|++|+.|+++.+.|.+........-...+.|-.++|.|... .++++.. 
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td-  350 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD-  350 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC-
Confidence            9999999999999999999999999 567899999999999999995332222112457899999999654 4556656 


Q ss_pred             CCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcC
Q psy519          155 SYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSV  231 (351)
Q Consensus       155 ~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~  231 (351)
                        ||.++-+|+|+. +++.+++.|..+|.++++++.- .++++++.|+.+++|++...+.-....... -+...++++.|
T Consensus       351 --dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~  428 (463)
T KOG0270|consen  351 --DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP  428 (463)
T ss_pred             --CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence              999999999986 8999999999999999999844 578899999999999986544322111000 13466777777


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCCcee
Q psy519          232 TGE-TLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       232 ~~~-~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +-. +++.|+..+.+++||+.+...+
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CcceEEEecCccceEEEeecccChhH
Confidence            654 5677888889999999876544

>KOG1273|consensus

Probab=99.94  E-value=5.5e-24  Score=167.51  Aligned_cols=242  Identities=15%  Similarity=0.230  Sum_probs=192.1

Q ss_pred             eEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc
Q psy519           53 VWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD  131 (351)
Q Consensus        53 i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  131 (351)
                      ..|+.|++.|.+ +.|+.||.|.+||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            678999999988 999999999999999999888999999999999999999999999999999999999999998887 


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC----CCCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH----VSPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      ..++|....|+|.....+.++.-  +..-.+-++..++....-...    +....+..|.+.|+++++|...|.+.++|.
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            67999999999955433333221  444555555443211111111    111223468899999999999999999999


Q ss_pred             CCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------cee---------eeeecceeEEecCCc
Q psy519          208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA-------SKI---------GIGVYPRCAAQPVGF  271 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-------~~~---------~~~~~~~~~~s~~~~  271 (351)
                      .+.+++..++......|.++.++..|++|+.-+.|..|+.|+++.-       +..         .......+.||.+|.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            9999999888666578999999999999999999999999998621       111         125667899999999


Q ss_pred             eeeeeeccceeeEEEeeeceeCceEEEe
Q psy519          272 EAATLAANSRVRTLREMHEIVGPVVVVE  299 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~  299 (351)
                      ++..++  .+-..+.+|....|..+.+.
T Consensus       263 Yv~a~s--~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  263 YVCAGS--ARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             EEEecc--ccceeEEEEecCCcceeeee
Confidence            987666  55677888888777655543

>KOG1063|consensus

Probab=99.93  E-value=2.2e-24  Score=185.88  Aligned_cols=282  Identities=23%  Similarity=0.221  Sum_probs=215.6

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------------------------------------
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------------------------------------   45 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------------------------------   45 (351)
                      .+..||..-|.++.|+|.  +..|.+++.|.++.+|.....                                       
T Consensus       261 all~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G  338 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG  338 (764)
T ss_pred             hhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence            456678888888888888  777777777777777765544                                       


Q ss_pred             ------------------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC----eeeEEeeCCCCCeEEEEEeCC
Q psy519           46 ------------------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM----YPLRIFVGHKQDVTCARFHPK  102 (351)
Q Consensus        46 ------------------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~i~~i~~~~~  102 (351)
                                        ..+|...|.+++|.|.|.+ ++.+.|.+-|++-.-..    ..+..-+-|...++|+++-+.
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence                              6688899999999999998 99999999999876522    233344568889999999886


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-------------------------------------------c---------------
Q psy519          103 ITYIGTGSYDKAVRLWSITDG-------------------------------------------A---------------  124 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~-------------------------------------------~---------------  124 (351)
                      ...+++|.....+++|+....                                           .               
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            667888888888888886411                                           0               


Q ss_pred             ------------------eeEEeccCCCCeEEEEEccCCCEEEEEecCCC--CCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          125 ------------------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       125 ------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                                        .+.++-+|...|++++.+|+++++|+++..+.  ...|++|+..+....+.+..|.-.|+.+
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                              01223368889999999999999999986321  3469999999888888999999999999


Q ss_pred             EECCCCcEEEEEcCCCeEEEEEcCCCcEEE---EeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeee-
Q psy519          185 AFSPCGKYLASGGEDGLVLTHELTTGRVIS---RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA--SKIGI-  258 (351)
Q Consensus       185 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~-  258 (351)
                      +|+|||++|++.+.|..+.+|.........   .....|..-|....|+|++.+++++|.|..|++|..+..  +.+.. 
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            999999999999999999999875432211   112345567899999999999999999999999999887  33322 


Q ss_pred             ------eecceeEEecCC-----ceeeeeeccceeeEEEee
Q psy519          259 ------GVYPRCAAQPVG-----FEAATLAANSRVRTLREM  288 (351)
Q Consensus       259 ------~~~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~  288 (351)
                            ..++.+++.|.-     ..++++...|.+..++..
T Consensus       659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence                  455666665532     246777777766655543

>KOG0321|consensus

Probab=99.93  E-value=4.3e-24  Score=182.52  Aligned_cols=274  Identities=16%  Similarity=0.210  Sum_probs=198.7

Q ss_pred             cceEEeeecCCc-cccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519           12 KHFIQNSFKPET-VEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus        12 ~~v~~~~~sp~~-~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      .+.++..|++.. ....|+.+..+|.|.++|....           ...|.+.|..+.|.|.... ++++.|.++++||+
T Consensus        50 ~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   50 VPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             CCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence            334667787742 1346888999999999998765           5679999999999994433 99999999999999


Q ss_pred             CCCeeeEE--eeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCce---------------------------eEE
Q psy519           79 EQMYPLRI--FVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGAS---------------------------VRV  128 (351)
Q Consensus        79 ~~~~~~~~--~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~---------------------------~~~  128 (351)
                      ++.+....  +.+|...+.+++|+|. ...|++|+.||.+.|||++....                           +..
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            99888766  8899999999999994 56889999999999999874320                           011


Q ss_pred             eccCCCCeEE---EEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe--------ccC---CCCEEEEEECCCCcEEE
Q psy519          129 FSDHVSPVLS---IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF--------SDH---VSPVLSIAFSPCGKYLA  194 (351)
Q Consensus       129 ~~~~~~~i~~---~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~--------~~~---~~~i~~~~~~~~~~~l~  194 (351)
                      -+.+...|.+   +.+..|...||+++.+  |+.|++||++........        ..|   ...+.++.....|.+|+
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~--D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~  287 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAA--DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF  287 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCC--CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence            1123334444   5566688889888764  999999999976433222        112   23467777777889999


Q ss_pred             EEcCCCeEEEEEcCCCcEEEEeeccCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------eeeecceeE
Q psy519          195 SGGEDGLVLTHELTTGRVISRFHLQEH---EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI------GIGVYPRCA  265 (351)
Q Consensus       195 ~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~  265 (351)
                      +.+.|+.|++|++.+-..-......+.   .....-..+|++.++++|+.|...++|.+.+.+.-      +...++.+.
T Consensus       288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~  367 (720)
T KOG0321|consen  288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR  367 (720)
T ss_pred             EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence            888999999999976432222111111   12233456899999999999999999999876543      347788899


Q ss_pred             EecCCce-eeeeeccceeeEEEe
Q psy519          266 AQPVGFE-AATLAANSRVRTLRE  287 (351)
Q Consensus       266 ~s~~~~~-~~~~~~~~~~~~~~~  287 (351)
                      |.|.... +++...|.+++.|++
T Consensus       368 w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  368 WLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             eccccCCCceeeccCcceEEEec
Confidence            9887654 444455555554544

>KOG1036|consensus

Probab=99.93  E-value=5.9e-24  Score=166.86  Aligned_cols=225  Identities=20%  Similarity=0.266  Sum_probs=183.9

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCC-cEEEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~vw~~~~~   81 (351)
                      .-.|..++.+++|.++   ..+++|+.||.|+.+|++..    ...|..+|.|+.+++.. .+++|+.|++|++||....
T Consensus        50 ~~~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   50 KFKHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             heecCCceeeeeccCC---ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            4457899999999986   66899999999999999988    77899999999999754 5599999999999999875


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      .....+.. ...|.++...  ++.|++|+.+..+.+||+++.......  ...+-+++|+++-|++.-+++++.   ||.
T Consensus       127 ~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi---eGR  200 (323)
T KOG1036|consen  127 VVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI---EGR  200 (323)
T ss_pred             cccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee---cce
Confidence            55555543 3478887665  778999999999999999986644322  234568899999998888888888   999


Q ss_pred             EEEEEccCC----ceeEEeccCC---------CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEE
Q psy519          160 VRLWSITDG----ASVRVFSDHV---------SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS  226 (351)
Q Consensus       160 i~i~d~~~~----~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  226 (351)
                      |.+=.+...    +....|+.|.         .||.+++|+|-...|++|+.||.|.+||+.+.+.+..+. .....|.+
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~s  279 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISS  279 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEE
Confidence            988766554    3334455443         378999999998999999999999999999998888775 33567999


Q ss_pred             EEEcCCCCEEEEEeC
Q psy519          227 LVWSVTGETLVTGSL  241 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~  241 (351)
                      ++|+.+|..||+++.
T Consensus       280 lsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  280 LSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeccCCCeEEEEec
Confidence            999999999999875

>KOG0650|consensus

Probab=99.93  E-value=1.4e-24  Score=184.18  Aligned_cols=275  Identities=17%  Similarity=0.125  Sum_probs=215.6

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~   77 (351)
                      +.+..||++.|.++...|.  |.+|++|+.||+|++|.+.++    .....+.|.|++|+|.+.+  ++......+.|.+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeEeccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            3457899999999999999  999999999999999999998    3344568999999998865  3333333444444


Q ss_pred             CCCC---------------------------------e----eeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEE
Q psy519           78 LEQM---------------------------------Y----PLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRL  117 (351)
Q Consensus        78 ~~~~---------------------------------~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i  117 (351)
                      ..-|                                 +    -+...-.|...|..+.|+..|.+|++...+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            3111                                 0    011223477889999999999999987654   57899


Q ss_pred             EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc
Q psy519          118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                      +++...+...-|+...+.+.++.|+|...+|++++    ...|++||+.....++.+......|..++.+|.|..|+.++
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            99987766666766778899999999999998886    68999999998887777777778899999999999999999


Q ss_pred             CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCceee-----------ee
Q psy519          198 EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP-------SASKIG-----------IG  259 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-------~~~~~~-----------~~  259 (351)
                      .|+.+..||+.-+.........|...+++++|++.-.++++|+.||++.||.-.       +...+.           ..
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~  706 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL  706 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence            999999999976543333333567889999999999999999999999998632       111111           13


Q ss_pred             ecceeEEecCCceeeeeeccceeeE
Q psy519          260 VYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       260 ~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      .+..+.|+|...++.+++.++.++.
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~tirl  731 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGTIRL  731 (733)
T ss_pred             ceEeecccCCCceEEecCCCceEEe
Confidence            4566789999999999988886554

>KOG1063|consensus

Probab=99.93  E-value=4.7e-24  Score=183.82  Aligned_cols=240  Identities=19%  Similarity=0.279  Sum_probs=199.1

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECC-CCcEEEEeCCCcEEEE
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACS-KGLALTGSRDTTARLW   76 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~-~~~~~~~~~d~~i~vw   76 (351)
                      -.||...|..++|+|.  |++|++.+.|-+-+++-....         .+.|....+|++|-+ +-++++|.....+|+|
T Consensus       357 iSGH~~~V~dv~W~ps--GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPS--GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             cccccccceeeeecCC--CCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence            4689999999999999  999999999999999876622         677888999999998 5566999999999999


Q ss_pred             eCCC-------------------------------------------Ce-------------------------------
Q psy519           77 SLEQ-------------------------------------------MY-------------------------------   82 (351)
Q Consensus        77 ~~~~-------------------------------------------~~-------------------------------   82 (351)
                      +...                                           |.                               
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            8521                                           00                               


Q ss_pred             --eeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           83 --PLRIFVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        83 --~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                        .++.+.+|...|.+++.+|+++++++++..     ..|++|+..+-...+.+.+|.-.|+.++|||||++|++.+.  
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--  592 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--  592 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec--
Confidence              011234688999999999999999999865     35999999988888899999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCc----eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC--cEEEE-eeccCCCCEEEEE
Q psy519          156 YDKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG--RVISR-FHLQEHEPVTSLV  228 (351)
Q Consensus       156 ~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~-~~~~~~~~v~~~~  228 (351)
                       |+.+.+|......    .....+.|..-|.+..|+|++++|+++|.|..|++|.....  +.+.. -..+....|+.++
T Consensus       593 -DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  593 -DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             -CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence             9999999975432    12336789999999999999999999999999999998877  44443 2234567899999


Q ss_pred             EcC-----CCCEEEEEeCCCeEEEEeCC
Q psy519          229 WSV-----TGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       229 ~~~-----~~~~l~~~~~dg~i~i~~~~  251 (351)
                      |.|     .+..+++|-..|.|.+|...
T Consensus       672 ~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  672 YLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eeccccccccceEEEEecccEEEEEecc
Confidence            987     23377889999999999966

>KOG1274|consensus

Probab=99.93  E-value=2.3e-23  Score=184.97  Aligned_cols=238  Identities=21%  Similarity=0.246  Sum_probs=200.8

Q ss_pred             CCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC-eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           47 SGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      ..|...-+.++|.|+|.+ ++++.||.|++|+...- +....+..+...|.+++..  +.+|++++.+++|.+|.+.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            368888999999999999 99999999999998765 3334444477778777664  5699999999999999999988


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      .-..+....-++++++++-+|++++.|+.   |-.|++.++.+......+.+|.++|.++.|+|++++||+.+.||.|++
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            77667667789999999999999999998   999999999999989999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEeecc-------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCC
Q psy519          205 HELTTGRVISRFHLQ-------EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVG  270 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~  270 (351)
                      ||+.++.....+..-       ....+..++|+|++..+++.+.|+.|++|+..+.+....       ..+..+.|+|.|
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence            999988766554321       124578899999988888888999999999988766543       336779999999


Q ss_pred             ceeeeeeccceeeEEEeeecee
Q psy519          271 FEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      +++|++..++.   +-+|+..+
T Consensus       245 ~YiAAs~~~g~---I~vWnv~t  263 (933)
T KOG1274|consen  245 KYIAASTLDGQ---ILVWNVDT  263 (933)
T ss_pred             cEEeeeccCCc---EEEEeccc
Confidence            99999988884   55666653

>KOG4283|consensus

Probab=99.93  E-value=2.2e-23  Score=162.81  Aligned_cols=207  Identities=22%  Similarity=0.356  Sum_probs=171.1

Q ss_pred             cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCe------------ee---EEeeCCCCCeEEEEEeC-CCCEEE
Q psy519           46 TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMY------------PL---RIFVGHKQDVTCARFHP-KITYIG  107 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~------------~~---~~~~~~~~~i~~i~~~~-~~~~l~  107 (351)
                      ...|.+.|+++...+. |++ ++|+.||.|.|||++...            ++   ..-.+|+..|..+.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            4568899999998875 577 999999999999997532            10   11236888999999999 666888


Q ss_pred             EEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC---CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       108 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      +++.|.++++||..+.+....|+ .++.|++-+++|-   ..++|+|..   +-.|++-|+.+|...+.+.+|...|.++
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr---~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR---DVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecC---CCcEEEEeccCCcceeeeccccCceEEE
Confidence            99999999999999988877776 5788999999993   457788877   8999999999999999999999999999


Q ss_pred             EECCCCc-EEEEEcCCCeEEEEEcCCC-cEEEEe-------------eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          185 AFSPCGK-YLASGGEDGLVLTHELTTG-RVISRF-------------HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       185 ~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      .|+|... .|++|+.||.|++||++.. .+...+             ...|.+.+.+++|+.++.++++.+.|..+++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            9999765 5778999999999999854 222222             223456899999999999999999999999999


Q ss_pred             CCCCcee
Q psy519          250 WPSASKI  256 (351)
Q Consensus       250 ~~~~~~~  256 (351)
                      ..+|+..
T Consensus       275 ~~~G~nt  281 (397)
T KOG4283|consen  275 MESGRNT  281 (397)
T ss_pred             cccCccc
Confidence            9887543

>KOG2919|consensus

Probab=99.93  E-value=2.6e-23  Score=164.26  Aligned_cols=254  Identities=19%  Similarity=0.271  Sum_probs=193.1

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc-----------cC-------CCccceEEEEEC-------CCCcE-EEEe
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TS-------GHDMTVWSVEAC-------SKGLA-LTGS   68 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~-------~~~~~i~~~~~~-------~~~~~-~~~~   68 (351)
                      ..+.||||  |..|++-+.|..+++|++...           ..       .....|...+|.       |+..+ ++.+
T Consensus        53 kgckWSPD--GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   53 KGCKWSPD--GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             ccceeCCC--CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            45899999  999999999999999999865           11       123456666665       45566 8889


Q ss_pred             CCCcEEEEeCCCCeeeEEeeC--CCC---CeEEEEEeCCCCEEEEEeCCCcEEEEeC-CCCceeEE-------eccCCCC
Q psy519           69 RDTTARLWSLEQMYPLRIFVG--HKQ---DVTCARFHPKITYIGTGSYDKAVRLWSI-TDGASVRV-------FSDHVSP  135 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~--~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~-------~~~~~~~  135 (351)
                      .+.-|++||.-+|+....+.+  |..   ...+++|+|||.+|+.| ....|++||+ +.|.....       ..+..+-
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999988776653  333   34689999999999875 4788999999 55543221       1234677


Q ss_pred             eEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCc-E
Q psy519          136 VLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGR-V  212 (351)
Q Consensus       136 i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~  212 (351)
                      +.+++|+|. ...+++++.   ...+-||.-..+.++..+-+|.+.|+.++|+++|+.|++|+. +-.|..||++..+ +
T Consensus       210 isc~a~sP~~~~~~a~gsY---~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSY---GQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             eeeeeccCCCCcceeeecc---cceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            899999995 458888888   888889888888899999999999999999999999999986 6789999998654 3


Q ss_pred             EEEeeccCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cceee-----eeecceeEEecCCceee
Q psy519          213 ISRFHLQEH--EPVTSLVWSVTGETLVTGSLTGTVQFYGWPS-ASKIG-----IGVYPRCAAQPVGFEAA  274 (351)
Q Consensus       213 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~-----~~~~~~~~~s~~~~~~~  274 (351)
                      +..+..+..  ..-.-+...|++++|++|+.||.|++||++. +..+.     ...++.++++|.-..++
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila  356 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA  356 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence            333322212  2233455568899999999999999999988 44333     35667788888844443

>KOG1034|consensus

Probab=99.93  E-value=5.3e-24  Score=168.44  Aligned_cols=275  Identities=18%  Similarity=0.241  Sum_probs=208.6

Q ss_pred             CCcCCCCccceEEeeecCCc--c-ccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCC----cE-E
Q psy519            4 SHLNHGDHKHFIQNSFKPET--V-EDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKG----LA-L   65 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~--~-~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~----~~-~   65 (351)
                      .++..+|..+|..++|.+-.  . -+.+|+++ ...+.+|.....          ...|...-..++|+-+-    -+ +
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la  109 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA  109 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence            47888999999999999620  0 23455554 446777776654          33477777888887442    34 8


Q ss_pred             EEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEE
Q psy519           66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAF  141 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~  141 (351)
                      .++.-|.|+|.|+.+++....+.+|...|+.+.++|+. +++++++.|..|++|++++..++..+   .+|.+.|.++.|
T Consensus       110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            88899999999999999999999999999999999954 68899999999999999999998887   469999999999


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEccCCceeE----------------------------EeccCCCCEEEEEECCCCcEE
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSITDGASVR----------------------------VFSDHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l  193 (351)
                      +++|.++++++.   |..|++|++...+...                            +-..|..+|-++.|-  |.++
T Consensus       190 ~~~gd~i~ScGm---Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i  264 (385)
T KOG1034|consen  190 SLDGDRIASCGM---DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI  264 (385)
T ss_pred             cCCCCeeeccCC---cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence            999999999999   9999999997432100                            111355556666665  6889


Q ss_pred             EEEcCCCeEEEEEc-CCCcE-------------EEEeeccCCCCEEE--EEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          194 ASGGEDGLVLTHEL-TTGRV-------------ISRFHLQEHEPVTS--LVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       194 ~~~~~dg~i~i~d~-~~~~~-------------~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      ++-+.++.|..|.. +-.+.             +..+.. ....+.-  .+|.|-+++||.|...|.|.+||++......
T Consensus       265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~  343 (385)
T KOG1034|consen  265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK  343 (385)
T ss_pred             eecccCceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence            99888999999987 21211             122221 1123443  4566678999999999999999998765531


Q ss_pred             ---------eeecceeEEecCCceeeeeeccceeeEE
Q psy519          258 ---------IGVYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       258 ---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                               ...+.+.+||.||..++..+.++.+-.|
T Consensus       344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence                     1566788999999999999998865433

>KOG1009|consensus

Probab=99.92  E-value=4.9e-23  Score=167.25  Aligned_cols=277  Identities=19%  Similarity=0.271  Sum_probs=210.2

Q ss_pred             CccceEEeeecCCcccc-EEEEecCCCceEEEecCCc--------------cCCCccceEEEEECCCCcE-EEEeCCCcE
Q psy519           10 DHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY--------------TSGHDMTVWSVEACSKGLA-LTGSRDTTA   73 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~--------------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i   73 (351)
                      ...+|.++.|.++  .. .||+|+.|..|++|.+...              +..|...|+++.|+|+|.+ ++|+.+|.+
T Consensus        12 ~~~pv~s~dfq~n--~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   12 DHEPVYSVDFQKN--SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             CCCceEEEEeccC--cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            5689999999998  55 9999999999999998765              7789999999999999988 999999999


Q ss_pred             EEEeCC--------C--------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeE
Q psy519           74 RLWSLE--------Q--------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL  137 (351)
Q Consensus        74 ~vw~~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  137 (351)
                      .+|...        +        ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+.+|...+.
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            999765        2        234456678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec----------c---------C----CCCEEEEEECCCCcEEE
Q psy519          138 SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS----------D---------H----VSPVLSIAFSPCGKYLA  194 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~----------~---------~----~~~i~~~~~~~~~~~l~  194 (351)
                      .++|.|-++++++-+.   |...+.+++...+.+....          .         |    ..-.+.++|+|||.+++
T Consensus       170 gvawDpl~qyv~s~s~---dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSS---DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             eeecchhhhhhhhhcc---CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            9999999999998877   7777777665432221111          0         1    12245688999999998


Q ss_pred             EEcC----CC-----eEEEEEcCCC-cEEEEeeccCCCCEEEEEEcC------------------CCCEEEEEeCCCeEE
Q psy519          195 SGGE----DG-----LVLTHELTTG-RVISRFHLQEHEPVTSLVWSV------------------TGETLVTGSLTGTVQ  246 (351)
Q Consensus       195 ~~~~----dg-----~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~~~~~dg~i~  246 (351)
                      +...    .+     ..++|+-... ++...+. ....+...+.|+|                  -+..+|.++ .+.|+
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svy  324 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVY  324 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEE
Confidence            7642    22     2345544322 1222221 1123344444433                  233455555 45899


Q ss_pred             EEeCCCCceee------eeecceeEEecCCceeeeeeccceeeEEEeeeceeC
Q psy519          247 FYGWPSASKIG------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       247 i~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +||.++..++.      -..++.++|+++|..++..+.||.-..+.+-..+-|
T Consensus       325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            99999876654      377889999999999999999998877777555555

>KOG0302|consensus

Probab=99.92  E-value=4.8e-23  Score=165.81  Aligned_cols=202  Identities=24%  Similarity=0.431  Sum_probs=162.7

Q ss_pred             CCCccceEEEEECCCC--cE-EEEeCCCcEEEEeCCC----------------CeeeEEeeCCCCCeEEEEEeCC-CCEE
Q psy519           47 SGHDMTVWSVEACSKG--LA-LTGSRDTTARLWSLEQ----------------MYPLRIFVGHKQDVTCARFHPK-ITYI  106 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~--~~-~~~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~i~~i~~~~~-~~~l  106 (351)
                      ..|.+.++.+.-.+.+  .+ ++-+..|.|.||++..                .+++.++.+|...=.+++|||- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3455666666666554  44 7778899999999842                3567788899998999999993 2357


Q ss_pred             EEEeCCCcEEEEeCCCCcee---EEeccCCCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCC
Q psy519          107 GTGSYDKAVRLWSITDGASV---RVFSDHVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSP  180 (351)
Q Consensus       107 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~  180 (351)
                      ++|..-+.|++|...++...   ..+.+|...|..++|||. ...|++|+.   |+.|+|||+|.+.  .....+.|.+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~---DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC---DGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec---CceEEEEEecCCCccceeEeeccCCc
Confidence            78877889999999887643   335669999999999995 457788887   9999999999882  22234789999


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCC---CcEEEEeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTT---GRVISRFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~  252 (351)
                      |+.+.|+.+-.+|++|+.||.++|||++.   ++++..|+ .|..+|+++.|+|. ...|++++.|.+|.+||+..
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999999888999999999999999985   56777886 67899999999995 45778888999999999864

>KOG1445|consensus

Probab=99.91  E-value=3.3e-23  Score=177.29  Aligned_cols=152  Identities=19%  Similarity=0.288  Sum_probs=122.3

Q ss_pred             CeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCC-------ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEE
Q psy519          135 PVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDG-------ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTH  205 (351)
Q Consensus       135 ~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~  205 (351)
                      .|+.+.|+| |...|++++.   ||.|++|.+..+       .....++.|...|+.+.|+| -...|++++.|-+|++|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~d---dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATD---DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             eeeecccCCCChHHeeeccc---CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            567788888 7788999988   999999998754       34456778999999999999 55789999999999999


Q ss_pred             EcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eee------eecceeEEecCCceeeeeec
Q psy519          206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK-IGI------GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       206 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~------~~~~~~~~s~~~~~~~~~~~  278 (351)
                      |+++++....+. .|...|..++|+|+|+.+|+.+.||+|++|+-++++. +..      ...-++.|--+|..+.+.+-
T Consensus       706 Dl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  706 DLANAKLYSRLV-GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             ehhhhhhhheec-cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence            999998877775 6778999999999999999999999999999887643 322      34457888889988665554


Q ss_pred             cc-eeeEEEeeec
Q psy519          279 NS-RVRTLREMHE  290 (351)
Q Consensus       279 ~~-~~~~~~~~~~  290 (351)
                      +. ..+.+.+++.
T Consensus       785 dk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  785 DKSSERQVQMYDA  797 (1012)
T ss_pred             cccchhhhhhhhh
Confidence            44 4445555553

>KOG0307|consensus

Probab=99.91  E-value=6.1e-24  Score=192.88  Aligned_cols=241  Identities=15%  Similarity=0.276  Sum_probs=199.6

Q ss_pred             ccceEEeeecCCccccE----EEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCCc-E-EEEeCCCcE
Q psy519           11 HKHFIQNSFKPETVEDV----LANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKGL-A-LTGSRDTTA   73 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~----l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~~-~-~~~~~d~~i   73 (351)
                      ..+...++|.+.  |+.    ||.|..||.|.+|+....           ...|.+.|..+.|++... + ++|+.||.|
T Consensus        64 ~~rF~kL~W~~~--g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   64 SNRFNKLAWGSY--GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             cccceeeeeccc--CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence            367789999998  765    888899999999998873           778999999999999764 5 999999999


Q ss_pred             EEEeCCCCeeeEEe--eCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEeccCCC--CeEEEEEccCC-CE
Q psy519           74 RLWSLEQMYPLRIF--VGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGASVRVFSDHVS--PVLSIAFSPCG-KY  147 (351)
Q Consensus        74 ~vw~~~~~~~~~~~--~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~  147 (351)
                      .|||++.-+.-..+  ....+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+..  .+..++|+|+. ..
T Consensus       142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            99999875544333  224578999999874 35678888899999999999888877765544  47789999975 45


Q ss_pred             EEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          148 LASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +++++.....-.|.+||+|.. ..++.++.|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+.. ....+.
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~f  300 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCF  300 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCccee
Confidence            666666444567999999875 4667788999999999999955 8999999999999999999999998863 557899


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCc
Q psy519          226 SLVWSVTGE-TLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       226 ~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~  254 (351)
                      .+.|+|... .+++++-||.|.||.+.+..
T Consensus       301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999655 78889999999999998765

>KOG0270|consensus

Probab=99.91  E-value=1.1e-22  Score=166.89  Aligned_cols=270  Identities=19%  Similarity=0.252  Sum_probs=195.0

Q ss_pred             EeeecCCccccEEEEecCCC-----ceEEEecCCc--cCCCc----cceEEEEECCC-------CcE-EEEeCCCcEEEE
Q psy519           16 QNSFKPETVEDVLANLESQK-----NLQSRYLPYY--TSGHD----MTVWSVEACSK-------GLA-LTGSRDTTARLW   76 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~-----~i~i~~~~~~--~~~~~----~~i~~~~~~~~-------~~~-~~~~~d~~i~vw   76 (351)
                      .+..-|+  ..+++++-.+.     .+++|+-...  +..|.    ....|++|..-       |++ +.|..|..|.||
T Consensus       130 e~~V~ps--DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKPS--DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceeccC--CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            4556676  67777664432     2455555443  33333    23356666532       467 999999999999


Q ss_pred             eCCCCe---ee------------------EEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEeccCCC
Q psy519           77 SLEQMY---PL------------------RIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGASVRVFSDHVS  134 (351)
Q Consensus        77 ~~~~~~---~~------------------~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  134 (351)
                      |+.-..   +.                  ..-.+|...|..++|+.. .+.|++|+.|.+|++||+.++++...+..|..
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k  287 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK  287 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence            985211   00                  112357888888888874 45889999999999999999999999999999


Q ss_pred             CeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCC-c
Q psy519          135 PVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTG-R  211 (351)
Q Consensus       135 ~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~  211 (351)
                      +|.+++|+| ...+|++|+.   |+++.+.|.|........-...+.|-.++|.|.. ..+++++.||.++-+|+|+. +
T Consensus       288 ~Vq~l~wh~~~p~~LLsGs~---D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~  364 (463)
T KOG0270|consen  288 KVQTLEWHPYEPSVLLSGSY---DGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK  364 (463)
T ss_pred             ceeEEEecCCCceEEEeccc---cceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence            999999999 5678888888   9999999999543322222345779999999955 57788889999999999976 6


Q ss_pred             EEEEeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcee-------eeeecceeEEecCCce-eeeeecccee
Q psy519          212 VISRFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPSASKI-------GIGVYPRCAAQPVGFE-AATLAANSRV  282 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~-------~~~~~~~~~~s~~~~~-~~~~~~~~~~  282 (351)
                      ++.++. .|..+|.++++++. ..+|++++.|+.|++|++...+..       ......+.++.|+-.. +++++..+  
T Consensus       365 ~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~--  441 (463)
T KOG0270|consen  365 PVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA--  441 (463)
T ss_pred             ceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc--
Confidence            676665 67889999999985 457889999999999999755432       1244455566665543 44444443  


Q ss_pred             eEEEeeeceeCc
Q psy519          283 RTLREMHEIVGP  294 (351)
Q Consensus       283 ~~~~~~~~~~g~  294 (351)
                       .+++|+..++.
T Consensus       442 -~~~vwd~~~~~  452 (463)
T KOG0270|consen  442 -VLRVWDIFTNS  452 (463)
T ss_pred             -eEEEeecccCh
Confidence             78888876654

>KOG4378|consensus

Probab=99.91  E-value=1.5e-22  Score=168.59  Aligned_cols=251  Identities=19%  Similarity=0.297  Sum_probs=195.7

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      ..+.++.|+..  ..++ +..+.|..+++|.-...       .......-.|++......+ ++|+..+.|+|||++...
T Consensus        35 pg~~s~~w~~~--n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   35 PGDFSFNWQRR--NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             Ccceeeecccc--ceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence            45899999987  5432 33355778888876554       1111113334444444566 999999999999999777


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCeEEEEEccCCCEEE-EEecCCCCCeE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLA-SGGTGSYDKAV  160 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~-~~~~~~~d~~i  160 (351)
                      +.+.+++|...|+++.++....+|++++..|.|.+..+.++.....+... ...++-+.|+|..+.++ +++.   +|.|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~V  189 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAV  189 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeE
Confidence            78888999999999999999999999999999999999998877777644 34566899999877655 4455   9999


Q ss_pred             EEEEccCCceeEEe-ccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE
Q psy519          161 RLWSITDGASVRVF-SDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       161 ~i~d~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                      .+||+....+...+ +.|..|...++|+| +..+|++.+.|..|.+||.+..+....+.  ...+...++|.++|.+|+.
T Consensus       190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEe
Confidence            99999876665543 57999999999999 55688889999999999999877776664  3457899999999999999


Q ss_pred             EeCCCeEEEEeCCCCce-eee-----eecceeEEecC
Q psy519          239 GSLTGTVQFYGWPSASK-IGI-----GVYPRCAAQPV  269 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~-~~~-----~~~~~~~~s~~  269 (351)
                      |+..|.|..||++..+. +..     ..+.+++|-|.
T Consensus       268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            99999999999987543 222     44666777665

>KOG2048|consensus

Probab=99.91  E-value=4.9e-21  Score=165.04  Aligned_cols=232  Identities=19%  Similarity=0.270  Sum_probs=184.8

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      +-...|-+++|++   +.+|++.+.+|.|.-||+.+.     .....+.|++++.+|.+.. +.|+.||.+..++...++
T Consensus        67 ~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~  143 (691)
T KOG2048|consen   67 PEDRSIESLAWAE---GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK  143 (691)
T ss_pred             CCCCceeeEEEcc---CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce
Confidence            4467899999994   567888889999999999887     5566789999999999877 889999988888887776


Q ss_pred             ee--EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec-------c-CCCCeEEEEEccCCCEEEEEe
Q psy519           83 PL--RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS-------D-HVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        83 ~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      ..  +.+...++++.+++|+|++..++.|+.||.|++||...+..+....       . ..--|.++.|-. ...|++|.
T Consensus       144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgD  222 (691)
T KOG2048|consen  144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGD  222 (691)
T ss_pred             EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEec
Confidence            44  3344556899999999999999999999999999999887766221       1 223456666664 45788888


Q ss_pred             cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE---EEEeeccCCCCEEEEEE
Q psy519          153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV---ISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~  229 (351)
                      .   .|.|++||...+..++.+..|...|.+++..+++.++++++.|+.+..|...++..   .......|...+.+++.
T Consensus       223 S---~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av  299 (691)
T KOG2048|consen  223 S---AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV  299 (691)
T ss_pred             C---CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence            7   89999999999999999999999999999999999999999999999998776533   22222345567888887


Q ss_pred             cCCCCEEEEEeCCCeEEEEe
Q psy519          230 SVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~  249 (351)
                      .++  .+++|+.|..+.+-.
T Consensus       300 ~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  300 IEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             ecc--eEEecceeeEEEEcc
Confidence            765  677777776665543

>KOG4378|consensus

Probab=99.90  E-value=1.7e-22  Score=168.20  Aligned_cols=252  Identities=13%  Similarity=0.147  Sum_probs=197.7

Q ss_pred             CCCceEEEecCCc-----cC--CCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCC--eeeEEeeCCCCCeEEEEEeC
Q psy519           33 SQKNLQSRYLPYY-----TS--GHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQM--YPLRIFVGHKQDVTCARFHP  101 (351)
Q Consensus        33 ~~~~i~i~~~~~~-----~~--~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~i~~i~~~~  101 (351)
                      ....+++||+...     +.  ...-.+.++.|+....+  ++.+.|..+++|.-...  +....-......-.|++...
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            3446999998876     11  12234899999988766  55567888999974422  11111111122334555444


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC-CCC
Q psy519          102 KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH-VSP  180 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~  180 (351)
                      ...++++|+..+.|+|||++...+.+.+++|.+.|+++.++-...+||+++.   .|.|.|..+.++.....+... ...
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~---gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD---GGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---CCcEEEEecccCccccceecCCCCe
Confidence            5589999999999999999987788889999999999999999999999998   899999999998877777654 345


Q ss_pred             EEEEEECCCCc-EEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcee--
Q psy519          181 VLSIAFSPCGK-YLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPSASKI--  256 (351)
Q Consensus       181 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~--  256 (351)
                      ++-+.|+|..+ +|.+++.+|.|.+||+....+...+...|..+...++|+|. ..+|++.+.|..|.+||..+....  
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~  246 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR  246 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence            66899999776 45678889999999999888888887788899999999994 567888999999999999876544  


Q ss_pred             --eeeecceeEEecCCceeeeeeccceeeEEEe
Q psy519          257 --GIGVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       257 --~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                        ...+...++|+++|.+|+.+.+.|.+..+.+
T Consensus       247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             eeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence              3477889999999999999999998766654

>KOG0321|consensus

Probab=99.90  E-value=2.1e-22  Score=172.32  Aligned_cols=241  Identities=16%  Similarity=0.251  Sum_probs=184.6

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSL   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~   78 (351)
                      ..|...|..+.|-|.  ...|++++.|.++++||+...       ..+|...|.+++|.+.+..  ++|+.||.|.|||+
T Consensus        97 ~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccceeEeeccCCC--ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            358899999999998  999999999999999999987       7799999999999998744  99999999999998


Q ss_pred             CCCe---------------------------eeEEeeCCCCCeEE---EEEeCCCCEEEEEeC-CCcEEEEeCCCCceeE
Q psy519           79 EQMY---------------------------PLRIFVGHKQDVTC---ARFHPKITYIGTGSY-DKAVRLWSITDGASVR  127 (351)
Q Consensus        79 ~~~~---------------------------~~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  127 (351)
                      .-..                           .+..-..+...|.+   +.+..|...|++++. |+.|++||++......
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            5211                           01111234444554   556668889999888 9999999998654322


Q ss_pred             E--------eccC---CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCC--CEEEEEECCCCcE
Q psy519          128 V--------FSDH---VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVS--PVLSIAFSPCGKY  192 (351)
Q Consensus       128 ~--------~~~~---~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~  192 (351)
                      .        +..+   ...+.++..+..|.+|++.+.   |+.|++|++.+-.  ++..+.++..  .-..-..+||+.+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            1        1112   346778888888999999888   9999999998642  3333333221  1122356899999


Q ss_pred             EEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q psy519          193 LASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~  253 (351)
                      +++|+.|...++|.+.+.+........|...|++++|.|.. .-++++++|..+++|++..+
T Consensus       332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999998877666666777899999999843 24667799999999999654

>KOG1034|consensus

Probab=99.90  E-value=5.2e-23  Score=162.87  Aligned_cols=239  Identities=20%  Similarity=0.265  Sum_probs=186.4

Q ss_pred             CCCccceEEeeecCCc--cccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeC
Q psy519            8 HGDHKHFIQNSFKPET--VEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSL   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~--~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~   78 (351)
                      ..|++....++|+-+.  ...+||+++.-|.|+|.|+...     +.+|...|+.+.+.|+. ++ ++++.|..|++|++
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            4578888999998762  2468999999999999999887     88999999999999987 44 99999999999999


Q ss_pred             CCCeeeEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE----------------------------
Q psy519           79 EQMYPLRIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR----------------------------  127 (351)
Q Consensus        79 ~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------  127 (351)
                      ++..++..+   .+|...|.++.|++++.+|++++.|.++++|++...+...                            
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            999998877   5799999999999999999999999999999997332100                            


Q ss_pred             EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEc-cCCc-------------eeEEeccCCCCEEEE--EECCCCc
Q psy519          128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI-TDGA-------------SVRVFSDHVSPVLSI--AFSPCGK  191 (351)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~-~~~~-------------~~~~~~~~~~~i~~~--~~~~~~~  191 (351)
                      +-.-|...|-|+.|-  |+++++=+-   ++.|..|-. +-++             .+..+.-....+.-+  +|.|-++
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSksc---enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~  320 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSC---ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK  320 (385)
T ss_pred             ccccccchHHHHHHH--hhheeeccc---CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence            111245556666663  678887666   889999986 2111             223333334445544  5567788


Q ss_pred             EEEEEcCCCeEEEEEcCCCcEEEEeecc---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          192 YLASGGEDGLVLTHELTTGRVISRFHLQ---EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       192 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .||.|...|.+++||+++..+...-.+.   ....|+..+|+.|+.+|+..++|+.|.-||..
T Consensus       321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999999987653222222   23679999999999999999999999999854

>KOG2445|consensus

Probab=99.90  E-value=2.2e-21  Score=152.45  Aligned_cols=236  Identities=19%  Similarity=0.308  Sum_probs=178.3

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC----CeeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~  118 (351)
                      ..+|.+-|+++.|.+.|+. ++|+.|++++|||.++    ..+....+.|.+.|..+.|-+  -|+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            4578999999999999988 9999999999999653    346667789999999999955  58899999999999999


Q ss_pred             eCCCC---------ceeEEeccCCCCeEEEEEcc--CCCEEEEEecCCCCCeEEEEEccCCc------eeEEec------
Q psy519          119 SITDG---------ASVRVFSDHVSPVLSIAFSP--CGKYLASGGTGSYDKAVRLWSITDGA------SVRVFS------  175 (351)
Q Consensus       119 d~~~~---------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~~~~------~~~~~~------  175 (351)
                      .-...         ....++....+.|+.+.|.|  -|-.+++++.   ||.++||+.-..-      ...+++      
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a---DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA---DGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc---CcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            75211         12445666788999999999  4678888888   9999999865432      222332      


Q ss_pred             -cCCCCEEEEEECCC---CcEEEEEcCC-----CeEEEEEcCCCc----EEEEeeccCCCCEEEEEEcCC----CCEEEE
Q psy519          176 -DHVSPVLSIAFSPC---GKYLASGGED-----GLVLTHELTTGR----VISRFHLQEHEPVTSLVWSVT----GETLVT  238 (351)
Q Consensus       176 -~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~~  238 (351)
                       .+..+..|+.|+|.   ..+|++|+.+     +.++||....+.    .+.++. .+..+|+.++|.|+    ..+||+
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEE
Confidence             35667889999983   4678888765     478888765432    233333 55689999999995    357899


Q ss_pred             EeCCCeEEEEeCCCCc--------------------eee-----eeecceeEEecCCceeeeeeccceeeEEE
Q psy519          239 GSLTGTVQFYGWPSAS--------------------KIG-----IGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~--------------------~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      ++.|| |+||++....                    ++.     ...+-++.|+-.|..|+..+.||.++.|+
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            99999 9999987411                    001     14666789999999888777777554443

>KOG4328|consensus

Probab=99.90  E-value=7.4e-22  Score=162.75  Aligned_cols=243  Identities=18%  Similarity=0.197  Sum_probs=187.2

Q ss_pred             cCCCccceEEEEECCCCc--E-EEEeCCCcEEEEeCCCC----eeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEE
Q psy519           46 TSGHDMTVWSVEACSKGL--A-LTGSRDTTARLWSLEQM----YPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRL  117 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~--~-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i  117 (351)
                      ...+..+|++++|+|...  + ++|...|+|-+||+.+.    .-+..+..|..+|.++.|+| +...+++.+.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            566889999999999864  4 88889999999999532    23456678999999999999 5568899999999999


Q ss_pred             EeCCCCceeE--EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce-eEEeccCCCCEEEEEECC-CCcEE
Q psy519          118 WSITDGASVR--VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSP-CGKYL  193 (351)
Q Consensus       118 ~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l  193 (351)
                      -|++.+..-.  .+......+..+.|+.+...++.+..   =|...+||++++.. ...+..|...|..++++| ...+|
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeec---ccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            9998764332  23234566788899988888888877   67999999998754 555667888999999999 45689


Q ss_pred             EEEcCCCeEEEEEcCCCcEEE---EeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCceeee--------
Q psy519          194 ASGGEDGLVLTHELTTGRVIS---RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP----SASKIGI--------  258 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~----~~~~~~~--------  258 (351)
                      ++++.|++.+|||++.-..-.   .....|...|.+..|||.+-.|++.+.|..|+|||..    .-.+...        
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG  418 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence            999999999999998643222   2234677899999999988889999999999999984    2122111        


Q ss_pred             --eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          259 --GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                        ......+|.|+...++++....   .|.+++...|+
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r---~IDv~~~~~~q  453 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPR---PIDVFDGNGGQ  453 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCc---ceeEEcCCCCE
Confidence              2233578999888877776654   47777766655

>KOG1007|consensus

Probab=99.89  E-value=2.4e-21  Score=150.96  Aligned_cols=242  Identities=19%  Similarity=0.288  Sum_probs=184.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCC-------CceEEEecCCc---------------cCCCccceEEEEECCCCc
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQ-------KNLQSRYLPYY---------------TSGHDMTVWSVEACSKGL   63 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~-------~~i~i~~~~~~---------------~~~~~~~i~~~~~~~~~~   63 (351)
                      ....|.+.|..++-+|.+ ...|++...+       ..+.||.++..               ...+-+.|.|+.|.|++.
T Consensus        58 vf~h~agEvw~las~P~d-~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFD-QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhcCCcceehhhcCCCC-CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            345678999999999971 3445554331       24679998876               224556899999999998


Q ss_pred             EEEEeCCCcEEEEeCCCCee-eEEee-----CCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCC
Q psy519           64 ALTGSRDTTARLWSLEQMYP-LRIFV-----GHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVF-SDHVS  134 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~-~~~~~-----~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~  134 (351)
                      .+.+-.|..|.+|+++.... +..+.     ++....++-+|+|  +++.+++.+ |+++..||+++.+....+ ..|..
T Consensus       137 klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  137 KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcc
Confidence            76666799999999987655 33321     3456678889998  788888765 899999999988776665 45888


Q ss_pred             CeEEEEEccCCCE-EEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCc
Q psy519          135 PVLSIAFSPCGKY-LASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       135 ~i~~~~~~~~~~~-l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      .++.+.|+|+.++ |++++.   ||.|++||.|.. .++..+.+|...+.++.|+| ..+++++++.|..|.+|-..+-.
T Consensus       216 ~vrdlDfNpnkq~~lvt~gD---dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGD---DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             eeeeccCCCCceEEEEEcCC---CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            8999999998765 667777   999999999875 56788899999999999999 55788899999999999653211


Q ss_pred             -----------------------------EEEEeeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q psy519          212 -----------------------------VISRFHLQEHEPVTSLVWSVTGE-TLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       212 -----------------------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~  253 (351)
                                                   .+.++. .|...|.+++|+.-.. ++|+-+.||++.|=.++..
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd-ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD-EHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccccCcchhhHHhccccccccccccc-ccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence                                         122332 4567899999998555 5678899999988776543

>KOG0303|consensus

Probab=99.89  E-value=3.6e-21  Score=156.02  Aligned_cols=206  Identities=19%  Similarity=0.327  Sum_probs=170.2

Q ss_pred             cCCCccceEEEEECCCCc--EEEEeCCCcEEEEeCCCC-------eeeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcE
Q psy519           46 TSGHDMTVWSVEACSKGL--ALTGSRDTTARLWSLEQM-------YPLRIFVGHKQDVTCARFHPK-ITYIGTGSYDKAV  115 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~--~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i  115 (351)
                      ..+|.++|..++|+|-+.  +++|+.|.+|.||++..+       +++..+.+|...|--++|+|. .+.|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            779999999999999664  399999999999998653       456778899999999999994 4688999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCC-CEEEEEECCCCcEEE
Q psy519          116 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS-PVLSIAFSPCGKYLA  194 (351)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~  194 (351)
                      .+||+.+++.+..+. |.+.|.++.|+.+|.++++++.   |..|++||.++++.+..-..|.+ ....+.|-.++.++-
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc---cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999999988887 9999999999999999999999   99999999999999988877765 344566777888555


Q ss_pred             EEc---CCCeEEEEEcCCCcE-EEEeeccCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCce
Q psy519          195 SGG---EDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVTGETLVT-GSLTGTVQFYGWPSASK  255 (351)
Q Consensus       195 ~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~  255 (351)
                      +|-   .+.++-+||..+-+. +...++...+.|.---|.+|.++++. |-.|+.|+.|.+.+..+
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            553   477899999876543 33333445567777788899888755 55599999999987653

>KOG0290|consensus

Probab=99.89  E-value=9.4e-21  Score=147.84  Aligned_cols=271  Identities=16%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             cceEEeeecCC-ccccEEEEecC----CCceEEEecCCc--------cCCCccceEEEEECCCC--cE--EEEeCCCcEE
Q psy519           12 KHFIQNSFKPE-TVEDVLANLES----QKNLQSRYLPYY--------TSGHDMTVWSVEACSKG--LA--LTGSRDTTAR   74 (351)
Q Consensus        12 ~~v~~~~~sp~-~~~~~l~~~~~----~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~--~~--~~~~~d~~i~   74 (351)
                      -++.++.||.. +.+.+||.|+.    .+.|.+..+...        ...|..+++.+.|.|+.  .+  +.++.+..+|
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LR  124 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLR  124 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEE
Confidence            56788999942 11457888864    466777776654        45789999999999986  33  5566667899


Q ss_pred             EEeCCC--Cee--eEEe-----eCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCce---eEEeccCCCCeEEEEE
Q psy519           75 LWSLEQ--MYP--LRIF-----VGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAF  141 (351)
Q Consensus        75 vw~~~~--~~~--~~~~-----~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~  141 (351)
                      +|.+..  .+.  ...+     ..+..+++++.|+. +.++|.+++-|-+..+||++++..   ...+-.|...|..++|
T Consensus       125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence            999873  221  1111     24567899999987 778999999999999999998733   4556679999999999


Q ss_pred             ccCC-CEEEEEecCCCCCeEEEEEccCCcee---EEeccCCCCEEEEEECC-CCcEEEEEcCC-CeEEEEEcCCC-cEEE
Q psy519          142 SPCG-KYLASGGTGSYDKAVRLWSITDGASV---RVFSDHVSPVLSIAFSP-CGKYLASGGED-GLVLTHELTTG-RVIS  214 (351)
Q Consensus       142 ~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~~~-~~~~  214 (351)
                      ...+ +.+++.+.   ||.+++||+|..+.-   .+-.....+...++|++ |-+++|+-..| ..|.|.|++.. ..+.
T Consensus       205 ~~~s~~~FASvga---DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva  281 (364)
T KOG0290|consen  205 LKGSRDVFASVGA---DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA  281 (364)
T ss_pred             ccCccceEEEecC---CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence            9855 56788888   999999999976432   22223356788999998 45777776654 46999999865 4455


Q ss_pred             EeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcee----------eeeecceeEEecCCceeeeeeccceee
Q psy519          215 RFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWPSASKI----------GIGVYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      ++. .|...|+.++|.|. ...|++++.|.++.+||+...-..          ....++.+.|+|....-...+.+....
T Consensus       282 ~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  282 RLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             hhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeee
Confidence            554 67789999999995 568999999999999999865331          236788899998766555555555555


Q ss_pred             EEE
Q psy519          284 TLR  286 (351)
Q Consensus       284 ~~~  286 (351)
                      .+|
T Consensus       361 iLR  363 (364)
T KOG0290|consen  361 ILR  363 (364)
T ss_pred             EEe
Confidence            544

>KOG0307|consensus

Probab=99.89  E-value=1.6e-22  Score=183.79  Aligned_cols=269  Identities=14%  Similarity=0.158  Sum_probs=202.7

Q ss_pred             EEeeecCCcccc-EEEEecC----------CCceEEEecCCc----------cCCCccceEEEEECCCC-----cEEEEe
Q psy519           15 IQNSFKPETVED-VLANLES----------QKNLQSRYLPYY----------TSGHDMTVWSVEACSKG-----LALTGS   68 (351)
Q Consensus        15 ~~~~~sp~~~~~-~l~~~~~----------~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~-----~~~~~~   68 (351)
                      -.++|||.  +. ++|+|..          +.++-+|.+...          ...-..+-+.++|.+.|     .++.|.
T Consensus        10 a~~awSp~--~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   10 ATFAWSPA--SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             ceEEecCC--CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccc
Confidence            45899999  76 6666532          445566655443          11234567889998765     357888


Q ss_pred             CCCcEEEEeCCC---C---eeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEe--ccCCCCeEEE
Q psy519           69 RDTTARLWSLEQ---M---YPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSI  139 (351)
Q Consensus        69 ~d~~i~vw~~~~---~---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~  139 (351)
                      .||.|.+||...   +   ..+..+..|.+.|..+.|++.. ++|++|+.||.|.|||+...+.....  ....+.|.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            999999999865   2   2355667899999999999954 59999999999999999875544443  2245789999


Q ss_pred             EEccCC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCCC--CEEEEEECCCC-cEEEEEcCCC---eEEEEEcCCCcE
Q psy519          140 AFSPCG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS--PVLSIAFSPCG-KYLASGGEDG---LVLTHELTTGRV  212 (351)
Q Consensus       140 ~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~  212 (351)
                      +|+..- ..|++++.   +|.+.|||+|..+.+-.+..+..  .+..+.|+|+. ..+++++.|.   .|.+||+|....
T Consensus       168 sWNrkvqhILAS~s~---sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass  244 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSP---SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS  244 (1049)
T ss_pred             ccchhhhHHhhccCC---CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence            999854 45667766   89999999999887777765443  47789999976 5677776643   699999987654


Q ss_pred             EEEeeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeee-----ecceeEEecCCc-eeeeeeccceeeEE
Q psy519          213 ISRFHLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWPSASKIGIG-----VYPRCAAQPVGF-EAATLAANSRVRTL  285 (351)
Q Consensus       213 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~s~~~~-~~~~~~~~~~~~~~  285 (351)
                      ..+....|...|.++.|++.+ .+|++++.|++|.+|+.++++.+...     .+..+.|+|... .++...-+|.+.++
T Consensus       245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            433334677899999999965 88999999999999999999988763     356789999876 67777888877666


Q ss_pred             Eee
Q psy519          286 REM  288 (351)
Q Consensus       286 ~~~  288 (351)
                      -+-
T Consensus       325 sl~  327 (1049)
T KOG0307|consen  325 SLQ  327 (1049)
T ss_pred             eee
Confidence            553

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=4.7e-19  Score=157.62  Aligned_cols=279  Identities=28%  Similarity=0.452  Sum_probs=220.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCc-cceEEEEE-CCCCc-E-EE-EeCCCcEE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHD-MTVWSVEA-CSKGL-A-LT-GSRDTTAR   74 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~-~~i~~~~~-~~~~~-~-~~-~~~d~~i~   74 (351)
                      ....|...+..+.|.+.  +..++.++.++.+.+|+....      +..+. ..+..+.+ .+++. + +. ...|+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCC--CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            34578899999999999  999999999999999998776      22222 36777777 77776 4 33 34489999


Q ss_pred             EEeCCC-CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEEE
Q psy519           75 LWSLEQ-MYPLRIFVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASG  151 (351)
Q Consensus        75 vw~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  151 (351)
                      +|+... ......+..|...+..++|+|++..++.++. ++.+++|++..+..+..+..|...+.+++|+|++. .++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            999998 7788888999999999999999998888885 99999999999888888988999999999999998 44444


Q ss_pred             ecCCCCCeEEEEEccCCceeE-EeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE-EEEeeccCCCCEEEEEE
Q psy519          152 GTGSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~  229 (351)
                      +.   |+.+++||.+.+.... .+..|.... ...|+|++.++++++.|+.+++|+++.... ...+ ..+...+.++.|
T Consensus       218 ~~---d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~  292 (466)
T COG2319         218 SS---DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAF  292 (466)
T ss_pred             cC---CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEE
Confidence            66   9999999998787777 677777765 448999998999999999999999987665 4444 355688999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeeeee-------cceeEEecCCceeeeee-ccceeeEEEeeeceeCc
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASKIGIGV-------YPRCAAQPVGFEAATLA-ANSRVRTLREMHEIVGP  294 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~g~  294 (351)
                      +|++..+++++.|+.+.+|+...........       +..+.+.+++..+..+. .+   ..+.+|+.....
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~  362 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRTGK  362 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCCCc
Confidence            9988888888889899999988776554432       55666633323444442 33   455556665554

>KOG0303|consensus

Probab=99.88  E-value=7.8e-21  Score=154.11  Aligned_cols=224  Identities=18%  Similarity=0.207  Sum_probs=175.3

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCC-c-EEEEeCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKG-L-ALTGSRDT   71 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~-~-~~~~~~d~   71 (351)
                      +-.||+.+|..++|+|.+ ...||+|+.|.+|.||++...            +.+|...|--++|+|.. + +++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccC-CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            456899999999999972 567899999999999999887            78999999999999976 3 39999999


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCC-CeEEEEEccCCCEEEE
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS-PVLSIAFSPCGKYLAS  150 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~  150 (351)
                      +|.+|++.+++.+.++. |..-|.++.|+.||.+|++++.|..|++||.++++.+..-..|.+ .-..+.|-.+|..+-+
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            99999999999888886 999999999999999999999999999999999999988766654 3344667778886666


Q ss_pred             EecCCCCCeEEEEEccCCce---eEEeccCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEE-Ee-eccCCCCE
Q psy519          151 GGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVIS-RF-HLQEHEPV  224 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~-~~~~~~~v  224 (351)
                      |-....+..+.+||..+-+.   ...+.. ...|.---|.||.+.++.+ -.|+.|+.|.+.+..+.. -+ .+....+-
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ  312 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ  312 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence            65444578999999765432   333433 3456666688888877654 469999999997665322 11 12233455


Q ss_pred             EEEEEcCC
Q psy519          225 TSLVWSVT  232 (351)
Q Consensus       225 ~~~~~~~~  232 (351)
                      +.+.|-|.
T Consensus       313 RG~g~mPK  320 (472)
T KOG0303|consen  313 RGMGFMPK  320 (472)
T ss_pred             cccccccc
Confidence            67777664

>KOG2110|consensus

Probab=99.88  E-value=1.2e-18  Score=140.53  Aligned_cols=283  Identities=15%  Similarity=0.184  Sum_probs=209.4

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEe--CCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGS--RDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~--~d~~i~vw~~~~~~   82 (351)
                      ....+....|..+  ...|..|+.+| .++|+.+..     .......|-.+-|+.. .++..+  .-+.+++++.+.+.
T Consensus         4 ~~~ti~~~~~Nqd--~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    4 KKPTINFIGFNQD--STLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CCcceeeeeeccc--eeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCc
Confidence            4456777789989  88999998887 667887765     2223345556667643 333333  33459999998887


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc---CCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD---HVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      .+..+. ...+|.++.++.+  .|++.-. ..|+|||+++.+.+.++..   +...+.++.+++.+.+++.-+. ...|.
T Consensus        80 ~ICe~~-fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~Gd  154 (391)
T KOG2110|consen   80 TICEIF-FPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGD  154 (391)
T ss_pred             eEEEEe-cCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-CCCce
Confidence            776664 4567889999754  5555544 4599999999999888754   4445666666667778887543 22789


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCe-EEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL-VLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLV  237 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~  237 (351)
                      |.+||+.+-+....+..|.+++.+++|+++|.+||++++.|+ |+++.+.+|+.+.+|+.... ..|.+++|+|++++|+
T Consensus       155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            999999999999999999999999999999999999999886 78999999999999874433 5789999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceee-------------------------------------e------eecceeEEec--CCce
Q psy519          238 TGSLTGTVQFYGWPSASKIG-------------------------------------I------GVYPRCAAQP--VGFE  272 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~-------------------------------------~------~~~~~~~~s~--~~~~  272 (351)
                      +.+..++|++|.++....-.                                     .      ..-..+.+.+  ....
T Consensus       235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~  314 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR  314 (391)
T ss_pred             EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence            99999999999986432110                                     0      0112344553  4556


Q ss_pred             eeeeeccceeeEEEeeeceeCceEEEeeE
Q psy519          273 AATLAANSRVRTLREMHEIVGPVVVVESF  301 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  301 (351)
                      +.+++.+|....+++-....|++..+...
T Consensus       315 v~vas~dG~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  315 VLVASYDGHLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             EEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence            77888888888888765566777666653

>KOG1524|consensus

Probab=99.88  E-value=2.9e-21  Score=162.41  Aligned_cols=258  Identities=15%  Similarity=0.168  Sum_probs=195.5

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEE-ecCCc----cCCCccce-EEEEECC--------CCcEEEEeCCCcE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSR-YLPYY----TSGHDMTV-WSVEACS--------KGLALTGSRDTTA   73 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~-~~~~~----~~~~~~~i-~~~~~~~--------~~~~~~~~~d~~i   73 (351)
                      ..|...+-++.|+.+  ...+.++ +|..+.+| ++...    ..-...-+ +.+..-+        ...++.++.||.+
T Consensus        11 ~r~~e~vc~v~w~~~--eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSN--EEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             cccceeEEeeccccc--ceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            356777888999988  6766665 45555555 44333    00011111 1111111        1245889999999


Q ss_pred             EEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      .+.+ +.++..+....|.+.+.+-.|+|||.-|+++++||.|++|. ++|-...++.....+|+|++|.|+.+.++.+. 
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-  164 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-  164 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence            9988 45667778889999999999999999999999999999999 56666666666778999999999888777664 


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                         .+.+.|=.+.....+-..+.|.+-|.++.|+|..+++++|++|-..++||-. |+.+..-. .|+.+|++++|+|+ 
T Consensus       165 ---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd-  238 (737)
T KOG1524|consen  165 ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPE-  238 (737)
T ss_pred             ---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeeccc-
Confidence               5788888888887788889999999999999999999999999999999974 55555433 56689999999999 


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeecceeEEecCCceeeeeeccceeeE
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      +.++.++. +++++      +....+.+..++|||||..++.+++.|.+-.
T Consensus       239 ~~~~v~S~-nt~R~------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  239 KDYLLWSY-NTARF------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cceeeeee-eeeee------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            66667765 35553      3334566778899999999999999887643

>KOG1538|consensus

Probab=99.88  E-value=9.7e-21  Score=163.25  Aligned_cols=259  Identities=19%  Similarity=0.280  Sum_probs=202.2

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ..|..++|-||  |..|+.+. +..+.+||.+.+     +.+|.+.|++++|+.||+. ++|+.|..|.+|..+-...+ 
T Consensus        13 hci~d~afkPD--GsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-   88 (1081)
T KOG1538|consen   13 HCINDIAFKPD--GTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-   88 (1081)
T ss_pred             cchheeEECCC--CceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence            38899999999  98877764 457999999988     8899999999999999987 99999999999986532222 


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEc
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                      .+ .|...|.|+.|+|-...+++++.. ..-+|...... +...+ ....+.+++|..||++++.|-.   +|+|.+-+-
T Consensus        89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~---nGTIsiRNk  161 (1081)
T KOG1538|consen   89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMF---NGTISIRNK  161 (1081)
T ss_pred             ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEecc---CceEEeecC
Confidence            33 699999999999988889888753 46688866433 22222 3467889999999999999988   999999874


Q ss_pred             cCCceeEEec---cCCCCEEEEEECCCC-----cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          166 TDGASVRVFS---DHVSPVLSIAFSPCG-----KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       166 ~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                       ++++...+.   +.+.+|.+++|+|..     ..+++.....++.+|.+. |+.+..-. .-.....++.+.++|.+++
T Consensus       162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEEE
Confidence             444433333   467899999999943     478888888889888884 54443211 2234568899999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEE
Q psy519          238 TGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      .|+.|+.+++|.- .|-.+.+     ..+..++..|+++..+.++.||++..+
T Consensus       239 iGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             EccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            9999999999964 3444443     566788999999999999999987644

>KOG0642|consensus

Probab=99.88  E-value=1.1e-21  Score=165.86  Aligned_cols=247  Identities=19%  Similarity=0.221  Sum_probs=190.6

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCCccceEEEEECCCCcE-EEEeC
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGHDMTVWSVEACSKGLA-LTGSR   69 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~-~~~~~   69 (351)
                      ......|...|.+++|.|.  ...|++++.+|.+.+|+++..             +.+|.++|.|++..+++.. ++|+.
T Consensus       287 k~tl~s~~d~ir~l~~~~s--ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPS--EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeeeecchhhhhhhhcCCC--CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            3456778899999999999  999999999999999999332             7899999999999999988 99999


Q ss_pred             CCcEEEEeCCCC----------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc--CCCCeE
Q psy519           70 DTTARLWSLEQM----------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD--HVSPVL  137 (351)
Q Consensus        70 d~~i~vw~~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~  137 (351)
                      ||+|+.|++...          .....+.+|.+.++.+++|+....|++++.||++++|+.....+ .++..  ..+...
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999999966421          12346789999999999999989999999999999999876665 33322  122334


Q ss_pred             EEEEccCC-CEEEEEecCCCCCeEEEEEccCCceeEEeccC-------CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          138 SIAFSPCG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDH-------VSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       138 ~~~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      ++.+-... ...++...   -+.-.++++.....+..+...       ...+..+.++|...+.+++..|+.|+++|..+
T Consensus       444 svd~~ss~~a~~~~s~~---~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR---FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             eEeeccchhHhhhhhcc---cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence            45554332 22222222   333344444444444444321       23467788999999999999999999999999


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      +.++.... .|...++++++.|+|.+|++++.|+.+++|.+.....+.
T Consensus       521 ~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  521 GKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cccchhee-eccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            99998775 567889999999999999999999999999987765543

>KOG2919|consensus

Probab=99.87  E-value=8.5e-21  Score=150.20  Aligned_cols=217  Identities=20%  Similarity=0.276  Sum_probs=172.7

Q ss_pred             CCccccEEEEecCCCceEEEecCCc-------cCCCcc---ceEEEEECCCCcEEEEeCCCcEEEEeC-CCCeeeE---E
Q psy519           21 PETVEDVLANLESQKNLQSRYLPYY-------TSGHDM---TVWSVEACSKGLALTGSRDTTARLWSL-EQMYPLR---I   86 (351)
Q Consensus        21 p~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~---~i~~~~~~~~~~~~~~~~d~~i~vw~~-~~~~~~~---~   86 (351)
                      |+  ..++|+.+.+.-|++||.-++       .-.|..   ...+++|+|||..+.++....|+|+|+ +.|+.-.   +
T Consensus       121 P~--t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PS--TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             Cc--cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhh
Confidence            56  778999999999999999887       122333   346899999999999999999999999 4443211   1


Q ss_pred             e----eCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           87 F----VGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        87 ~----~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +    .+..+-+.+++|+| +.+.++.++....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|..  .+..|.
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl  276 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKIL  276 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEE
Confidence            1    23467789999999 4558999999999999998889999999999999999999999999999875  488999


Q ss_pred             EEEccCC-ceeEEeccCCC-CEE--EEEECCCCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          162 LWSITDG-ASVRVFSDHVS-PVL--SIAFSPCGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       162 i~d~~~~-~~~~~~~~~~~-~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      .||+|.. ..+..+..|.. .-.  -....|++++|++|+.||.|++||++. +..+..+. .+...++.++++|--.++
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mpil  355 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMPIL  355 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCccccee
Confidence            9999874 45555655544 222  345578999999999999999999987 56555543 456789999999998888


Q ss_pred             EEEeCC
Q psy519          237 VTGSLT  242 (351)
Q Consensus       237 ~~~~~d  242 (351)
                      ++++..
T Consensus       356 atssGq  361 (406)
T KOG2919|consen  356 ATSSGQ  361 (406)
T ss_pred             eeccCc
Confidence            887654

>KOG0322|consensus

Probab=99.87  E-value=3.5e-21  Score=148.27  Aligned_cols=240  Identities=16%  Similarity=0.196  Sum_probs=184.7

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cC-CCccceEEEEECCCCcEEEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TS-GHDMTVWSVEACSKGLALTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~   77 (351)
                      ....++|.+.|+++.|..+  + +|.+|...|.+.+|.+.+.     +. .+...|+.+.-.|++.+.+-+.|..+.+|+
T Consensus         7 ~fvLRp~~~~v~s~~fqa~--~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQAN--E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT   83 (323)
T ss_pred             eeEeccccchheehhhccc--h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence            4456799999999999987  4 5999999999999999988     44 678899999999998889999999999999


Q ss_pred             CCCCeeeE--------------E-------------ee--------------------------CCCCCeEEEEEeC-CC
Q psy519           78 LEQMYPLR--------------I-------------FV--------------------------GHKQDVTCARFHP-KI  103 (351)
Q Consensus        78 ~~~~~~~~--------------~-------------~~--------------------------~~~~~i~~i~~~~-~~  103 (351)
                      +.....+.              .             +.                          +..+.+.+..+.. .+
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            86421110              0             00                          0112344444322 22


Q ss_pred             C--EEEEEeCCCcEEEEeCCCCcee----------EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC--c
Q psy519          104 T--YIGTGSYDKAVRLWSITDGASV----------RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--A  169 (351)
Q Consensus       104 ~--~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~--~  169 (351)
                      .  +++.|.++|.+.+||+.++..+          .....|..+|.++.|.+.-..=++++.   +..+..|.+...  .
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga---~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA---DDKLVMYSLNHSTGS  240 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc---cccceeeeeccccCc
Confidence            2  4567788999999999987433          333468899999999876555566666   788899987643  1


Q ss_pred             --eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          170 --SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       170 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                        ........+..+..+..-||++.+|+++.|+.|++|..++.+++..+. .|...|++++|+|+..++|+++.|++|.+
T Consensus       241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCCceEEe
Confidence              122222334467889999999999999999999999999999999886 56789999999999999999999999999


Q ss_pred             EeC
Q psy519          248 YGW  250 (351)
Q Consensus       248 ~~~  250 (351)
                      |++
T Consensus       320 WkL  322 (323)
T KOG0322|consen  320 WKL  322 (323)
T ss_pred             eec
Confidence            986

>KOG0650|consensus

Probab=99.87  E-value=4.7e-20  Score=157.01  Aligned_cols=237  Identities=18%  Similarity=0.238  Sum_probs=189.2

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT--YIGTGSYDKAVRLWSITD  122 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~  122 (351)
                      +.+|.+.|.++...|.|.+ ++|+.||+++||.+.+++++++++ ..+.|.|++|+|.+.  .|+++- +..+.+.+..-
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~  473 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIF  473 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccc
Confidence            7899999999999999998 999999999999999999999885 456899999999654  444443 33344444321


Q ss_pred             Cc-------------------------------------eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEc
Q psy519          123 GA-------------------------------------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus       123 ~~-------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                      |.                                     -+...-.|...|..+.|+..|.+|++....+....|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            10                                     01222347788999999999999999876555678999999


Q ss_pred             cCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       166 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      ...+...-|....+.+.++.|+|...+|++++. ..|+|||+.....++.+. .....|..++.+|.|.-|+.|+.|+.+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecCCCee
Confidence            887766667667788999999999999998876 579999998876666553 455689999999999999999999999


Q ss_pred             EEEeCCCCce------eeeeecceeEEecCCceeeeeeccceeeEEE
Q psy519          246 QFYGWPSASK------IGIGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       246 ~i~~~~~~~~------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      ..||+.-...      .+...+.++++++.-..+++++.++.+.++.
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999986532      2446778899999888899999988876654

>KOG0649|consensus

Probab=99.87  E-value=2.9e-19  Score=136.29  Aligned_cols=227  Identities=16%  Similarity=0.206  Sum_probs=177.4

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---------------cCCCccceEEEEECCCCcEEEEeCCCcEEEE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------------TSGHDMTVWSVEACSKGLALTGSRDTTARLW   76 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw   76 (351)
                      ..|.+-+++|.  +++|++|..+|.|.+..+...               .++|.++|+.++|. +..+++|+ ||.|+-|
T Consensus        11 ~tvf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEe
Confidence            35677899999  999999999999999998765               57899999999998 33335544 5999999


Q ss_pred             eCCCCee------eEEee--C-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           77 SLEQMYP------LRIFV--G-----HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        77 ~~~~~~~------~~~~~--~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                      ..+....      ....+  .     .--.|+++-..|..+.+++++.|+.++-||+++|+..+.+++|.+.+.+++--.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            8754321      11111  1     123688899999888888888899999999999999999999999999999866


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC----------CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV----------SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      ....+++|++   ||++++||.++++.+..+....          ..|.+++.  +..++++|+. ..+.+|.+++.+..
T Consensus       167 ~~~qilsG~E---DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t  240 (325)
T KOG0649|consen  167 ANGQILSGAE---DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSEST  240 (325)
T ss_pred             cCcceeecCC---CccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCce
Confidence            6778899999   9999999999999888765322          23444444  5667777764 56999999999998


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ..+.+  ..++..+.|.  .+.+++++..+.|.-|.+..
T Consensus       241 ~vfpi--pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  241 CVFPI--PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             EEEec--ccceeEeeee--cceEEEeccccceeeeeecc
Confidence            88854  4578888885  45677777778899998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=1.6e-17  Score=147.81  Aligned_cols=308  Identities=31%  Similarity=0.474  Sum_probs=224.1

Q ss_pred             cceEEeee-cCCcccc-EEEEecC-CCceEEEecCC-c-----cCCCccceEEEEECCCCcE-EEEeC-CCcEEEEeCCC
Q psy519           12 KHFIQNSF-KPETVED-VLANLES-QKNLQSRYLPY-Y-----TSGHDMTVWSVEACSKGLA-LTGSR-DTTARLWSLEQ   80 (351)
Q Consensus        12 ~~v~~~~~-sp~~~~~-~l~~~~~-~~~i~i~~~~~-~-----~~~~~~~i~~~~~~~~~~~-~~~~~-d~~i~vw~~~~   80 (351)
                      ..+..+.+ +++  +. +++..+. ++.+.+|+... .     ...|...|..+.|+|++.. +.++. |+.+++|++..
T Consensus       110 ~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         110 SSVSKLALSSPD--GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             CceeeEEEECCC--cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            35666666 787  77 5555444 89999999986 2     7889999999999999976 67765 99999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeE-EeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      +..+..+.+|...+.+++|+|++. .+++++.|+.+++||...+.... .+..|.... ...|+|++..+++++.   |+
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---d~  263 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS---DG  263 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC---CC
Confidence            888888888999999999999988 55555899999999998777777 677777775 4489999988888888   99


Q ss_pred             eEEEEEccCCce-eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee-ccCCCCEEEEEEcCCCCEE
Q psy519          159 AVRLWSITDGAS-VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH-LQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       159 ~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l  236 (351)
                      .+++||++.... ...+..|...+.++.|.|++..+++++.|+.+.+||........... ..+...+..+.|.+++..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (466)
T COG2319         264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL  343 (466)
T ss_pred             cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence            999999987664 44445778899999999988888888888889999998877666554 2344568999994332455


Q ss_pred             EEE-eCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee------EEEEe
Q psy519          237 VTG-SLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES------FIVEI  305 (351)
Q Consensus       237 ~~~-~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~  305 (351)
                      +.+ ..|+.+.+|+.........    .....+.+++ . ..... .......+.+|+...........      ....+
T Consensus       344 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (466)
T COG2319         344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF  420 (466)
T ss_pred             EEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEE-EecCCCceEEEecccCeeeeeccCCCCcEEEEEE
Confidence            555 6789999999988772222    1145677777 5 33322 23334456666665544322111      11345


Q ss_pred             cCCceeeccEEEecCCccccceee
Q psy519          306 RPDKWYEANLIVLDDDLKECNLET  329 (351)
Q Consensus       306 ~~~~~~~~~~~~~~~~i~~~~~~~  329 (351)
                      ++++.+... ...+..++.|+...
T Consensus       421 ~~~~~~~~~-~~~~~~~~~~~~~~  443 (466)
T COG2319         421 SPDGKSLAS-GSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEE-ecCCCcEEEEeccC
Confidence            555554433 13455566666555

>KOG0290|consensus

Probab=99.86  E-value=8e-20  Score=142.69  Aligned_cols=235  Identities=17%  Similarity=0.197  Sum_probs=177.2

Q ss_pred             CCCccceEEeeecCCccc---cEEEEecCCCceEEEecCCc--------------cCCCccceEEEEECCCC-cE-EEEe
Q psy519            8 HGDHKHFIQNSFKPETVE---DVLANLESQKNLQSRYLPYY--------------TSGHDMTVWSVEACSKG-LA-LTGS   68 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~---~~l~~~~~~~~i~i~~~~~~--------------~~~~~~~i~~~~~~~~~-~~-~~~~   68 (351)
                      -.|.-+++.+-|.|+..|   ++||+.  +..+++|.+...              ...+..++++..|+.-. ++ .+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            357889999999998322   356654  347999998842              44567889999998654 44 8889


Q ss_pred             CCCcEEEEeCCCCe---eeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEec---cCCCCeEEEEE
Q psy519           69 RDTTARLWSLEQMY---PLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFS---DHVSPVLSIAF  141 (351)
Q Consensus        69 ~d~~i~vw~~~~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~  141 (351)
                      -|.+..|||++++.   ....+-.|..+|..++|...+ +.+++.+.||++++||++..+.-..+-   ....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999863   355667899999999999854 578999999999999999876444332   22467888999


Q ss_pred             cc-CCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcE----EE
Q psy519          142 SP-CGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRV----IS  214 (351)
Q Consensus       142 ~~-~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~----~~  214 (351)
                      ++ |-+++|+-...  ...|.+.|+|.. ..+..+.+|.+.|..++|.| ....|.+++.|..+.+||+...-.    -.
T Consensus       251 nkqDpnymATf~~d--S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  251 NKQDPNYMATFAMD--SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             CcCCchHHhhhhcC--CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            98 45667765541  567999999985 57788999999999999999 457899999999999999975322    00


Q ss_pred             EeeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEE
Q psy519          215 RFHLQEHEPVTSLVWSV-TGETLVTGSLTGTVQF  247 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  247 (351)
                      .+.....+.|+.+.|++ .+.+++.+.. +.+.+
T Consensus       329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            11123456899999996 5678877654 34443

>KOG1009|consensus

Probab=99.86  E-value=5e-20  Score=149.95  Aligned_cols=247  Identities=17%  Similarity=0.217  Sum_probs=187.3

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecC--------C------c-------cCCCccceEEEEECCCCcE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLP--------Y------Y-------TSGHDMTVWSVEACSKGLA   64 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~--------~------~-------~~~~~~~i~~~~~~~~~~~   64 (351)
                      .+..|...|+++.|+|+  |++||+|+.+|.|.+|...        +      .       ..+|...|..++|+|++.+
T Consensus        60 ~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPD--GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             cccCCcceeEEEEEcCC--cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            45679999999999999  9999999999999999877        2      1       6789999999999999999


Q ss_pred             -EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec-------------
Q psy519           65 -LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS-------------  130 (351)
Q Consensus        65 -~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------  130 (351)
                       ++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.+....             
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e  217 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE  217 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence             999999999999999999999999999999999999999999998888877766654332211110             


Q ss_pred             ----------cCCCCeEEEEEccCCCEEEEEecC-CCC-----CeEEEEEccC-CceeEEeccCCCCEEEEEECC-----
Q psy519          131 ----------DHVSPVLSIAFSPCGKYLASGGTG-SYD-----KAVRLWSITD-GASVRVFSDHVSPVLSIAFSP-----  188 (351)
Q Consensus       131 ----------~~~~~i~~~~~~~~~~~l~~~~~~-~~d-----~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~-----  188 (351)
                                ......+.++|+|+|.++++.... ...     +..++|+-.. .++...+.....+...+.++|     
T Consensus       218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el  297 (434)
T KOG1009|consen  218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL  297 (434)
T ss_pred             cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence                      011234568899999999876320 001     2234444221 233344444445555555554     


Q ss_pred             -------------CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          189 -------------CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       189 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                                   -+..+++++. ..+++||.++..++.....-|-..++.++|++||..|+..+.||...+-.++..++
T Consensus       298 rp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  298 RPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             ccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence                         2234566665 56999999988888877766778999999999999999999999988877776544

>KOG4227|consensus

Probab=99.85  E-value=2.3e-19  Score=145.74  Aligned_cols=274  Identities=13%  Similarity=0.105  Sum_probs=203.4

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCCcE-EEEeCCCcEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKGLA-LTGSRDTTAR   74 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~   74 (351)
                      .+|.+.|.++.||.+  +++||+|+.|..+++|++...            ...|...|.|++|...+.+ .+|+.+++|.
T Consensus        53 ~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   53 REHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            579999999999999  999999999999999998765            3456789999999988877 8999999999


Q ss_pred             EEeCCCCeeeEEeeCCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-ee--EEeccCCCCeEEEEEccCC-CE
Q psy519           75 LWSLEQMYPLRIFVGHK---QDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SV--RVFSDHVSPVLSIAFSPCG-KY  147 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~i~~~~~~~~~-~~  147 (351)
                      ..|+++.+.+..+. |.   +.|..+..+|-.+.|++.+.++.|.+||.+... ..  ..+.........+.|+|.. .+
T Consensus       131 ~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  131 KHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             eeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            99999988876663 43   489999999998999999999999999998755 22  2233455677889999954 56


Q ss_pred             EEEEecCCCCCeEEEEEccCCce-eEE------eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          148 LASGGTGSYDKAVRLWSITDGAS-VRV------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                      |++...   .+-+-+||.+.... +..      +......-..+.|+|+|+.|++--....-.+||+-+.++. .+...|
T Consensus       210 i~~~~~---~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~  285 (609)
T KOG4227|consen  210 ILVNSE---TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDH  285 (609)
T ss_pred             EEeccc---cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccC
Confidence            667666   88899999986532 111      1111223367889999999888776666778898764432 233333


Q ss_pred             C-------CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eee----------------------eeecceeE
Q psy519          221 H-------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS------KIG----------------------IGVYPRCA  265 (351)
Q Consensus       221 ~-------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~------~~~----------------------~~~~~~~~  265 (351)
                      .       ..+.+++|.-|.. +++|+.+-.|++|.++...      .+.                      ...+.++.
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR  364 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR  364 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence            2       2577788875544 8999999999999986321      110                      13446788


Q ss_pred             EecCCceeeeeeccceeeEEEeeecee
Q psy519          266 AQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       266 ~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      |+|....++.   .|....+++|....
T Consensus       365 F~~H~~~l~S---SGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  365 FSQHNNLLVS---SGVENSFKLWSDHR  388 (609)
T ss_pred             ecCCcceEec---cchhhheecccccc
Confidence            9887775544   44455788886533

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=9.3e-18  Score=144.46  Aligned_cols=255  Identities=9%  Similarity=0.065  Sum_probs=171.4

Q ss_pred             EEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCC-CCee--eEEeeCCCCCeE
Q psy519           28 LANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLE-QMYP--LRIFVGHKQDVT   95 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~-~~~~--~~~~~~~~~~i~   95 (351)
                      +++...++.|++|++...       ...+.+....++++|++++  +++..++.|.+|+++ +++.  ..... ......
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence            445567899999999632       1123355778899999986  344568899999986 3332  22222 233567


Q ss_pred             EEEEeCCCCEEEEEeC-CCcEEEEeCCCCc----eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce
Q psy519           96 CARFHPKITYIGTGSY-DKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS  170 (351)
Q Consensus        96 ~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~  170 (351)
                      .++++|+++++++++. ++.|.+|++.+..    .+..+. +.....+++++|++++++++..+  ++.|.+||+.+...
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~g~  160 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDDGH  160 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCCCc
Confidence            8999999998888765 7899999996422    222222 23456778999999999776652  79999999976332


Q ss_pred             eE-------EeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCC--Cc--EEEEeecc-----CCCCEEEEEEcCCC
Q psy519          171 VR-------VFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTT--GR--VISRFHLQ-----EHEPVTSLVWSVTG  233 (351)
Q Consensus       171 ~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~  233 (351)
                      +.       ... .......+.|+|++++++++.. ++.|.+|++..  ++  .+..+...     +......+.++|++
T Consensus       161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            21       111 2234578999999999988876 89999999973  32  23332211     11123468899999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCc----eeee----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          234 ETLVTGSL-TGTVQFYGWPSAS----KIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       234 ~~l~~~~~-dg~i~i~~~~~~~----~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ++++++.. ++.|.+|++....    .+..    .....+.++|+|++++++....  ..+.+|+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~--~~v~v~~  302 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS--HHISVYE  302 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC--CcEEEEE
Confidence            99998855 7899999985432    1222    1335789999999988776422  3455554

>KOG1963|consensus

Probab=99.85  E-value=1.2e-18  Score=154.74  Aligned_cols=277  Identities=15%  Similarity=0.104  Sum_probs=209.7

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCC--c-------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY--Y-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~--~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      +...|...+++.++||+  ++++|++..||.|.+|.-..  .       +.=|...|++++|+++|.+ ++|+..+.+.+
T Consensus       200 ~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  200 ITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             hhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence            34557777999999999  99999999999999997655  2       5568899999999999988 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-----------CCCCeEEEEEccC
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-----------HVSPVLSIAFSPC  144 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~  144 (351)
                      |.+++++ .+.+..-..+|..+.++||+.+.+....|..|.+....+.+....+.+           ..+-.+.++++|.
T Consensus       278 Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  278 WQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             EeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence            9999988 445556678999999999999999999999999998866554433322           2345677899997


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEecc-----------CCCCEEEEEECCCCcEEEEEc--------CC--CeEE
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFSD-----------HVSPVLSIAFSPCGKYLASGG--------ED--GLVL  203 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~--------~d--g~i~  203 (351)
                      -+.++..+.   .+.|++||+.+.+.+..+..           +.-.++.++.+..|.++++.-        .|  -.++
T Consensus       357 ~~~~vln~~---~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  357 TNSLVLNGH---PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             CCceeecCC---CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence            777777777   99999999988776655431           223467777777899998863        23  3578


Q ss_pred             EEEcCCC----cEEEEeeccCCCCEEEEEEcC-CC-CEEEEEeCCCeEEEEeCCCCcee---------------eeeecc
Q psy519          204 THELTTG----RVISRFHLQEHEPVTSLVWSV-TG-ETLVTGSLTGTVQFYGWPSASKI---------------GIGVYP  262 (351)
Q Consensus       204 i~d~~~~----~~~~~~~~~~~~~v~~~~~~~-~~-~~l~~~~~dg~i~i~~~~~~~~~---------------~~~~~~  262 (351)
                      +|-....    .....+..+|...+...++.+ .. ...++++.||.+++|-+...+.+               +..++.
T Consensus       434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~  513 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT  513 (792)
T ss_pred             EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence            8876533    334455566665555555443 33 37899999999999998543322               125667


Q ss_pred             eeEEecCCceeeeeeccceeeEEEeeecee
Q psy519          263 RCAAQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       263 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      .++|+.||..++++..+    ++.+|+..+
T Consensus       514 a~~fs~dGslla~s~~~----~Itiwd~~~  539 (792)
T KOG1963|consen  514 ALCFSQDGSLLAVSFDD----TITIWDYDT  539 (792)
T ss_pred             chhhcCCCcEEEEecCC----EEEEecCCC
Confidence            89999999877776665    688888666

>KOG1188|consensus

Probab=99.85  E-value=7.7e-20  Score=145.77  Aligned_cols=258  Identities=17%  Similarity=0.143  Sum_probs=181.4

Q ss_pred             cEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCC--CcE-EEEeCCCcEEEEeCCCCeeeEEe--eCCC-CCe
Q psy519           26 DVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSK--GLA-LTGSRDTTARLWSLEQMYPLRIF--VGHK-QDV   94 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~--~~~-~~~~~d~~i~vw~~~~~~~~~~~--~~~~-~~i   94 (351)
                      ..+|++.++|.|++||..+.     +.++...++.+.|...  ... .+|+.||+|++||++.......+  .++. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            46899999999999999986     7888899999999874  233 89999999999999876654433  3444 466


Q ss_pred             EEEEEeCCCCEEEEEeC----CCcEEEEeCCCCce-eEEe-ccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccC
Q psy519           95 TCARFHPKITYIGTGSY----DKAVRLWSITDGAS-VRVF-SDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        95 ~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      .+++.+..++.+++|..    +-.+.+||++..+. +..+ ..|.+.|+++.|+| +.++|++|+.   ||.+.+||+..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv---DGLvnlfD~~~  197 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV---DGLVNLFDTKK  197 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc---cceEEeeecCC
Confidence            77777777888888754    67899999998766 5544 56999999999999 5678899988   99999999876


Q ss_pred             Cc---eeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----------CCEEEEEEcC-
Q psy519          168 GA---SVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQEH-----------EPVTSLVWSV-  231 (351)
Q Consensus       168 ~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~-  231 (351)
                      ..   .+...-.+...|..+.|..++ +.+.+-+..+...+|+++.+.....+..+..           .-+... .+| 
T Consensus       198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~  276 (376)
T KOG1188|consen  198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPG  276 (376)
T ss_pred             CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCC
Confidence            42   222223577789999999876 4688888889999999998876554432211           011111 223 


Q ss_pred             CCCEEEEEeC-CCeEEEEeCC---CCce------e---eeeecceeEEecCCceeeeeeccceeeEEEe
Q psy519          232 TGETLVTGSL-TGTVQFYGWP---SASK------I---GIGVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       232 ~~~~l~~~~~-dg~i~i~~~~---~~~~------~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      +...++.++. -|...++-+.   ++..      +   +...+..+.|...+..+.+++.+|.+..|+.
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            4445555444 4555554433   2211      1   2345556666666777778877776665554

>KOG0644|consensus

Probab=99.84  E-value=1.7e-20  Score=165.32  Aligned_cols=243  Identities=17%  Similarity=0.288  Sum_probs=192.8

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|...|.|++|...  |.++++|+.|..++||..++.     ..||.+.|+.++.+.++.+ ++++.|..|++|.+.+
T Consensus       186 LlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHhhhhheeeeeeccc--cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            4579999999999999  999999999999999998877     8899999999999988877 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-----ec-------------------------
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-----FS-------------------------  130 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~-------------------------  130 (351)
                      +.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-......     +.                         
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            99999999999999999999964    678899999999871100000     00                         


Q ss_pred             cCCCCeEEEEEccCCCEEEEEec--------CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCe
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGT--------GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGL  201 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~--------~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  201 (351)
                      .......+++|...+-.+++...        ...+-.+.+|++.++...+.+.+|..++..+.++| +.....+++.||.
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence            00011122333322222222221        01156788999999999999999999999999999 5566778899999


Q ss_pred             EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      ..|||+-.|.+++.+.. .+..+..-.||++|..++....-|.++|.....++..
T Consensus       420 t~iwdi~eg~pik~y~~-gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  420 TIIWDIWEGIPIKHYFI-GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             eEeeecccCCcceeeec-ccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            99999999998888764 4677888999999999998888899999887655433

>KOG0322|consensus

Probab=99.84  E-value=1.2e-19  Score=139.80  Aligned_cols=237  Identities=19%  Similarity=0.299  Sum_probs=180.6

Q ss_pred             cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.++++.|..++++.+|...|.+++|++++.+....++ .+...|+.+.--|+ ..+.+-+.|+.+.+|++..+.
T Consensus        10 LRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~   88 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA   88 (323)
T ss_pred             eccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence            3478999999999999999999999999999999998887787 56778999988887 567788999999999986532


Q ss_pred             eeE--------------Ee---------------------------------------ccCCCCeEEEEEcc-CCC--EE
Q psy519          125 SVR--------------VF---------------------------------------SDHVSPVLSIAFSP-CGK--YL  148 (351)
Q Consensus       125 ~~~--------------~~---------------------------------------~~~~~~i~~~~~~~-~~~--~l  148 (351)
                      .+.              .+                                       .+..+.++|..+.. .+.  ++
T Consensus        89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll  168 (323)
T KOG0322|consen   89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL  168 (323)
T ss_pred             eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence            110              00                                       01123445554332 222  45


Q ss_pred             EEEecCCCCCeEEEEEccCCcee----------EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC--c--EEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASV----------RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG--R--VIS  214 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~--~~~  214 (351)
                      ++|.+   +|.+.+||+.++..+          .....|..++.++.+.+....=++|+.+..+..|++...  .  ...
T Consensus       169 laGyE---sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  169 LAGYE---SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEecc---CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            56666   999999999987433          333468899999999986666688888888999988643  2  222


Q ss_pred             EeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          215 RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      .+... +-.+..+.+-||++.+|+++.|++|+||+.++.+.+..     ..++.++|+|+...+|.++.|.++..|++
T Consensus       246 e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22222 34688999999999999999999999999999988754     67788999999999999988887666654

>KOG0771|consensus

Probab=99.84  E-value=1e-19  Score=148.92  Aligned_cols=201  Identities=22%  Similarity=0.237  Sum_probs=159.7

Q ss_pred             EEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-
Q psy519           54 WSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-  131 (351)
Q Consensus        54 ~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  131 (351)
                      .+++|+.+|.. ++++.||++|||+..+...+.....|...|.++.|+|||++|++-+.| ..++|+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            67899999766 999999999999988888787888899999999999999999999999 899999999977665542 


Q ss_pred             -CCCCeEEEEEccCC---CEEEEEecCCCCCeEEEEEccCCce-----eEEeccCCCCEEEEEECCCCcEEEEEcCCCeE
Q psy519          132 -HVSPVLSIAFSPCG---KYLASGGTGSYDKAVRLWSITDGAS-----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       132 -~~~~i~~~~~~~~~---~~l~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  202 (351)
                       .......+.|+.++   .+.+.+.. ..-+.|..||+...+.     .++.......|++++.++||++++.|+.||.|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             33445667787766   33333322 2256677776643221     11222234479999999999999999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      .|++..+.+.++.++..|...|+.+.|+|+.+++++.+.+.+..+..+.-.+..
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~  359 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTM  359 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccc
Confidence            999999999998888778889999999999999999999999998887654333

>KOG1587|consensus

Probab=99.83  E-value=1.7e-18  Score=153.02  Aligned_cols=237  Identities=18%  Similarity=0.166  Sum_probs=181.4

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCC---cEEEEeCCCcEEEE
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKG---LALTGSRDTTARLW   76 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~---~~~~~~~d~~i~vw   76 (351)
                      ..+|.++.|+|.+ ..++|.|..+|.|.+||+...           ...|..++..+.|..+.   .+++++.||.|..|
T Consensus       242 ~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  242 PSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             CCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            5789999999973 677888899999999999887           45688999999998643   47999999999999


Q ss_pred             eCCCCee-e-----EEee------CCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCc--------eeEEeccCCCC
Q psy519           77 SLEQMYP-L-----RIFV------GHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGA--------SVRVFSDHVSP  135 (351)
Q Consensus        77 ~~~~~~~-~-----~~~~------~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~  135 (351)
                      +++.-.. .     ....      .....+++++|.+ +...++.|+..|.|.--+....+        ....+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8764322 1     0111      1224678899988 56688999999998874433221        23345568899


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEcc-CCceeEEeccCCCCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCc--
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGR--  211 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--  211 (351)
                      |+++.++|=+..++..+.   |..++||... ...++..+..+...+++++|||- ...|+++..+|.+.+||+....  
T Consensus       401 v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             eEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence            999999996665555545   9999999987 66777777777888999999994 4688899999999999997543  


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ++.+.... ......+.|++.|+.|++|...|.+++|++..
T Consensus       478 Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  478 PVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             Cccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            33333322 34567788888899999999999999999964

>KOG1524|consensus

Probab=99.83  E-value=3.2e-19  Score=150.29  Aligned_cols=204  Identities=21%  Similarity=0.294  Sum_probs=168.3

Q ss_pred             cEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEe
Q psy519           26 DVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH  100 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~  100 (351)
                      +.++.++.||.+.+.+-...    ...|.+.+.+-.|+|+|.- +++++||.|++|.- +|....++.....+|.|++|.
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEEC
Confidence            56888889999988876655    7789999999999999976 99999999999994 455555555667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC
Q psy519          101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP  180 (351)
Q Consensus       101 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  180 (351)
                      |+.+.++.+. .+.+.+=.+.....+...+.|.+-|.++.|++..+.+++|++   |-..++||- .|..+..-..|+.+
T Consensus       155 p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE---D~kfKvWD~-~G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  155 PNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE---DFRFKIWDA-QGANLFTSAAEEYA  229 (737)
T ss_pred             CCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC---ceeEEeecc-cCcccccCChhccc
Confidence            9888776654 566777777777777778899999999999999999999999   999999995 57777777789999


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      |++++|.|+ +.++.++.+ .++            +.....+.|..++||+||..++.|+..|.+.+=.
T Consensus       230 ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeeeeccc-cceeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            999999999 666666542 233            3334457899999999999999999999876644

>KOG1517|consensus

Probab=99.83  E-value=2e-18  Score=156.14  Aligned_cols=273  Identities=18%  Similarity=0.211  Sum_probs=198.7

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--c------CCCccceEEEEECCCC---cEEEEeCCCcEEEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--T------SGHDMTVWSVEACSKG---LALTGSRDTTARLW   76 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~------~~~~~~i~~~~~~~~~---~~~~~~~d~~i~vw   76 (351)
                      .+...+-..+.|+|-  .+.++++...-.|++||.+.+  +      ......|..+.+..+.   .+++|+.||.|+||
T Consensus      1061 ~~n~~~pk~~~~hpf--~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPF--EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             hcCCCCCceeeecCC--CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence            344456678999999  899999988889999999887  1      1234578888887543   33999999999999


Q ss_pred             eCC-C----CeeeEEeeC-------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec-cCCCCeEEEEEcc
Q psy519           77 SLE-Q----MYPLRIFVG-------HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSP  143 (351)
Q Consensus        77 ~~~-~----~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~  143 (351)
                      +-- +    .+.+..+.+       ..+.-.-+.|.....+|++++.-..|+|||......+..+. +....++++.-+.
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence            742 2    222222211       11111346787766777777778999999998877776664 3345566665443


Q ss_pred             -CCCEEEEEecCCCCCeEEEEEccCCc---eeEEeccCCCC--EEEEEECCCCc-EEEEEcCCCeEEEEEcCCCcEEEEe
Q psy519          144 -CGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSDHVSP--VLSIAFSPCGK-YLASGGEDGLVLTHELTTGRVISRF  216 (351)
Q Consensus       144 -~~~~l~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  216 (351)
                       .|+.+++|..   ||.|++||.|...   .+...+.|...  |..+.+.++|- .|++|+.+|.|++||++.......+
T Consensus      1219 ~~gn~i~AGfa---DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGNIIAAGFA---DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             cCCceEEEeec---CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence             5789999998   9999999998753   45566778776  99999998775 5999999999999999974322222


Q ss_pred             eccC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----------eeecceeEEecCCceeeeeeccce
Q psy519          217 HLQE----HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG-----------IGVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       217 ~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-----------~~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      ....    .+..+++..+++...+|+|+. +.|+||++...+...           .....+++|+|-...+|++..|..
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence            2111    235899999999999999998 999999987544321           255678999999999999988876


Q ss_pred             eeEEE
Q psy519          282 VRTLR  286 (351)
Q Consensus       282 ~~~~~  286 (351)
                      +..+.
T Consensus      1375 V~iYs 1379 (1387)
T KOG1517|consen 1375 VSIYS 1379 (1387)
T ss_pred             EEEee
Confidence            65543

>KOG0771|consensus

Probab=99.83  E-value=3.6e-18  Score=139.98  Aligned_cols=189  Identities=23%  Similarity=0.310  Sum_probs=148.4

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe
Q psy519           95 TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF  174 (351)
Q Consensus        95 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~  174 (351)
                      ..++|+++|..+++++.||.+++|+..+...+.....|...|.++.|+|||++|++.+.   | ..++|+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence            57999999999999999999999998888877777889999999999999999999987   7 9999999999776665


Q ss_pred             cc--CCCCEEEEEECCCC---c--EEEEEcCCCeEEEEEcCCCcE---EEE-eeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy519          175 SD--HVSPVLSIAFSPCG---K--YLASGGEDGLVLTHELTTGRV---ISR-FHLQEHEPVTSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       175 ~~--~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~---~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg  243 (351)
                      ..  .......+.|+.|+   .  .++....-+.|..||+.....   ++. ........|.+++.+++|++++.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            43  22345667787766   2  233333455677766643222   111 1122345899999999999999999999


Q ss_pred             eEEEEeCCCCceee------eeecceeEEecCCceeeeeeccceeeEEEe
Q psy519          244 TVQFYGWPSASKIG------IGVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       244 ~i~i~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      .|.|++..+.+.+.      ...++.+.|+|+.+.++..+.+.....+++
T Consensus       304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            99999999887664      367888999999999998888877666665

>KOG2111|consensus

Probab=99.83  E-value=1.1e-16  Score=126.93  Aligned_cols=232  Identities=12%  Similarity=0.175  Sum_probs=170.4

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCc--cceEEEEECCCCcE-EEEeCC------CcEEEEe
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHD--MTVWSVEACSKGLA-LTGSRD------TTARLWS   77 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~--~~i~~~~~~~~~~~-~~~~~d------~~i~vw~   77 (351)
                      ....+++|+.|  ...++++..+| .++|+.+..     ...+.  -.+..|-|-. +.+ +.|+.+      ..+.|||
T Consensus         6 ~~~lsvs~NQD--~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~-N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    6 PKTLSVSFNQD--HSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS-NYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             CceeEEEEccC--CceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh-ceEEEecCCCCCCCCCceEEEEe
Confidence            45567999999  88899887666 899998875     11111  1222222322 223 555544      5699999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeEEeccC--CCCeEEEEEccCCCEEEEEecC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT-DGASVRVFSDH--VSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      =...+++.++. ...+|.++.+.++  .|++.- .+.|++|... +.+.++.+...  +..+.+++-+.+..+|+.-+  
T Consensus        82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg--  155 (346)
T KOG2111|consen   82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG--  155 (346)
T ss_pred             cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC--
Confidence            76777777764 5678999999875  455544 6789999987 45555555332  33344444443444555433  


Q ss_pred             CCCCeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcCCCe-EEEEEcCCCcEEEEeeccCC-CCEEEEEEc
Q psy519          155 SYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGEDGL-VLTHELTTGRVISRFHLQEH-EPVTSLVWS  230 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~  230 (351)
                      -.-|.|+|-|+...+.  ...+..|...|.+++.+-+|..+|+++..|+ |+|||..+|..+.++..... ..+.+++||
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            3479999999987655  4778899999999999999999999999986 79999999999999875443 689999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCC
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      |++.+|+++|+.|+++||.++..
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999998753

>KOG1538|consensus

Probab=99.83  E-value=5.6e-19  Score=152.52  Aligned_cols=235  Identities=14%  Similarity=0.209  Sum_probs=185.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...++|...|.+++|+.+  |+++|+|+.|..|.+|+..-.   .-.|.+.|.|+.|+|-... ++++- ...-+|..+.
T Consensus        47 qtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~q  123 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQ  123 (1081)
T ss_pred             cccccccceEEEEEEccC--CceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhh
Confidence            457899999999999999  999999999999999987655   5579999999999998876 55543 5677888765


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEEccCC-----CEEEEEe
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSPCG-----KYLASGG  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-----~~l~~~~  152 (351)
                      .... .. .....+.+.+|..||++++.|-.+|+|.+-+-. ++....+   .+..++|.+++|+|..     ..+++..
T Consensus       124 K~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D  200 (1081)
T KOG1538|consen  124 KSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD  200 (1081)
T ss_pred             hhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence            4322 22 234578889999999999999999999998754 4333333   3467899999999953     4566666


Q ss_pred             cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC
Q psy519          153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT  232 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  232 (351)
                      -   ..++..|.+ +|+.+..-+...-...++.+.|+|.+++.|+.|+.+.+|- +.|-.+-++. .....|..++..|+
T Consensus       201 W---~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg-~~D~WIWtV~~~PN  274 (1081)
T KOG1538|consen  201 W---GQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG-EQDSWIWTVQAKPN  274 (1081)
T ss_pred             c---cceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecc-ccceeEEEEEEccC
Confidence            6   777888876 4555544334445567899999999999999999999996 4666666654 35678999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q psy519          233 GETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~  251 (351)
                      ++.++.|+.||+|..|++-
T Consensus       275 sQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  275 SQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CceEEEEEccCeeehhhhH
Confidence            9999999999999999864

>KOG1007|consensus

Probab=99.83  E-value=6.6e-19  Score=137.54  Aligned_cols=198  Identities=23%  Similarity=0.317  Sum_probs=159.6

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECC--CCcEEEEeCC
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACS--KGLALTGSRD   70 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~--~~~~~~~~~d   70 (351)
                      .+|...+-+.|.|+.|.|+  ++.+++-. +..|.+|++...           ..++....++-+|+|  +|..+....|
T Consensus       116 ~~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d  192 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD  192 (370)
T ss_pred             hcCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence            3444455668999999999  99998875 788999999877           234566777888998  5666777889


Q ss_pred             CcEEEEeCCCCeeeEEe-eCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEcc-CCC
Q psy519           71 TTARLWSLEQMYPLRIF-VGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGK  146 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~  146 (351)
                      +++..||+++.++...+ ..|...+..+.|+|+.+ +|++++.||.|++||.+.. .++..+.+|...|.++.|+| ..+
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence            99999999988776655 47888999999999865 6788999999999999864 57888999999999999999 456


Q ss_pred             EEEEEecCCCCCeEEEEEccCC-----------------------------ceeEEeccCCCCEEEEEECC-CCcEEEEE
Q psy519          147 YLASGGTGSYDKAVRLWSITDG-----------------------------ASVRVFSDHVSPVLSIAFSP-CGKYLASG  196 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  196 (351)
                      ++++++.   |..|.+|....-                             ..+.++..|+..|++++|+. |--.||+-
T Consensus       273 LiLs~~S---Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL  349 (370)
T KOG1007|consen  273 LILSGGS---DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL  349 (370)
T ss_pred             EEEecCC---CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence            7788888   999999975321                             12345667999999999997 55578888


Q ss_pred             cCCCeEEEEEc
Q psy519          197 GEDGLVLTHEL  207 (351)
Q Consensus       197 ~~dg~i~i~d~  207 (351)
                      +.||.+.|=.+
T Consensus       350 SYDGRviIs~V  360 (370)
T KOG1007|consen  350 SYDGRVIISSV  360 (370)
T ss_pred             ccCceEEeecC
Confidence            99999887554

>KOG1445|consensus

Probab=99.82  E-value=7e-19  Score=151.12  Aligned_cols=229  Identities=19%  Similarity=0.198  Sum_probs=172.2

Q ss_pred             ccEEEE--ecCCCceEEEecCCc---------cCCCccceEEEEECCCC--cEEEEeCCCcEEEEeCCCC-------eee
Q psy519           25 EDVLAN--LESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQM-------YPL   84 (351)
Q Consensus        25 ~~~l~~--~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~~~~~-------~~~   84 (351)
                      ..++|.  .+.-|.|-||+++..         .......|+.+.|.|-.  +++.++.||.|++|.+..+       .+.
T Consensus       591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe  670 (1012)
T KOG1445|consen  591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE  670 (1012)
T ss_pred             cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence            555553  456789999999876         12245679999999854  5699999999999998643       455


Q ss_pred             EEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE
Q psy519           85 RIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~  163 (351)
                      ..+..|.+.|+++.|+| -...|++++.|-+|++||+++++....+.+|.+.|.+++|+|+|+.+++.+.   ||.|++|
T Consensus       671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy  747 (1012)
T KOG1445|consen  671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVY  747 (1012)
T ss_pred             eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec---CceEEEe
Confidence            67789999999999999 4568999999999999999999999999999999999999999999999999   9999999


Q ss_pred             EccCCc-eeEEeccC-CCCEEEEEECCCCcEEEEEcCC----CeEEEEEcCCC--cEEEEeeccCCCCEEEEEEcCCCC-
Q psy519          164 SITDGA-SVRVFSDH-VSPVLSIAFSPCGKYLASGGED----GLVLTHELTTG--RVISRFHLQEHEPVTSLVWSVTGE-  234 (351)
Q Consensus       164 d~~~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-  234 (351)
                      ..++++ .++.-++. ...-..+.|.-||+++++.+.|    .+|.+||..+-  ..+....+.....+.--.+.+|.. 
T Consensus       748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~  827 (1012)
T KOG1445|consen  748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNV  827 (1012)
T ss_pred             CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCce
Confidence            998764 33332221 1233467788899998887755    46888887643  333333222222233334556655 


Q ss_pred             EEEEEeCCCeEEEEeCCCCcee
Q psy519          235 TLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      ++++|-.|..|.+|.+-..+..
T Consensus       828 lfltGKGD~~v~~yEv~~esPy  849 (1012)
T KOG1445|consen  828 LFLTGKGDRFVNMYEVIYESPY  849 (1012)
T ss_pred             EEEecCCCceEEEEEecCCCce
Confidence            5577878999999998665443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=5.3e-17  Score=139.79  Aligned_cols=232  Identities=13%  Similarity=0.170  Sum_probs=160.1

Q ss_pred             cceEEeeecCCccccEEEEe-cCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEE-eCCCcEEEEeCCC-
Q psy519           12 KHFIQNSFKPETVEDVLANL-ESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTG-SRDTTARLWSLEQ-   80 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~-~~d~~i~vw~~~~-   80 (351)
                      .....++++|+  +++|+++ ..++.|.+|++...       ..........++|+|++++ +++ ..++.|.+|++++ 
T Consensus        35 ~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         35 GQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            45677899999  9988765 45788999998632       1112335678999999987 444 4589999999974 


Q ss_pred             Ce---eeEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeE-------EeccCCCCeEEEEEccCCCEEE
Q psy519           81 MY---PLRIFVGHKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVR-------VFSDHVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        81 ~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~  149 (351)
                      +.   .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.       ... .......++|+|+|++++
T Consensus       113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEE
Confidence            22   222222 334467788999999886555 56999999997633221       111 234467899999999998


Q ss_pred             EEecCCCCCeEEEEEccC--Cc--eeEEeccC------CCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCc-E---EE
Q psy519          150 SGGTGSYDKAVRLWSITD--GA--SVRVFSDH------VSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGR-V---IS  214 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~--~~--~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~---~~  214 (351)
                      ++...  ++.|.+||+..  ++  .+..+..+      ......+.++|++++++++.. ++.|.+|++.... .   +.
T Consensus       191 v~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~  268 (330)
T PRK11028        191 CVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG  268 (330)
T ss_pred             EEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence            87643  79999999974  22  23333211      112346889999999999865 6899999986433 1   22


Q ss_pred             EeeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC
Q psy519          215 RFHLQEHEPVTSLVWSVTGETLVTGSL-TGTVQFYGWP  251 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~  251 (351)
                      .+.  .......+.++|+|++|+++.. ++.|.+|+++
T Consensus       269 ~~~--~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        269 HQP--TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEe--ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            221  1235678999999999998775 8999999875

>KOG0649|consensus

Probab=99.81  E-value=6.3e-17  Score=123.66  Aligned_cols=225  Identities=16%  Similarity=0.184  Sum_probs=168.1

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCC-----ccceEEEEECCCC-cEEEEe
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGH-----DMTVWSVEACSKG-LALTGS   68 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~-----~~~i~~~~~~~~~-~~~~~~   68 (351)
                      .+|..+|..++|.    .++|++++ ||.|+=|..+..             ...|     --.|+++...|.. .+++++
T Consensus        59 qahdgpiy~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             cccCCCeeeeeee----hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence            6799999999999    45677664 599999988765             1112     2457888888765 458888


Q ss_pred             CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC----------CCCeEE
Q psy519           69 RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH----------VSPVLS  138 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~i~~  138 (351)
                      .|+.++-||+++|+..+.+++|.+.+.++.--.....+++|++||++++||.++++.++.+...          ...|.+
T Consensus       134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga  213 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA  213 (325)
T ss_pred             CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE
Confidence            9999999999999999999999999999988555668899999999999999999988876432          223555


Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      ++.  +..++++|+    ...+.+|.++..++...+. ...++..+.|.  .+.++++++.+.+.-|.+ +|........
T Consensus       214 la~--~edWlvCGg----Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~  283 (325)
T KOG0649|consen  214 LAV--NEDWLVCGG----GPKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPV  283 (325)
T ss_pred             Eec--cCceEEecC----CCceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccC
Confidence            555  567888886    6789999999998888774 45678888885  456777887888999987 4544444433


Q ss_pred             cCCCCEEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy519          219 QEHEPVTSLVWSVTG-ETLVTGSLTGTVQFY  248 (351)
Q Consensus       219 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~  248 (351)
                      . .....+..|+... ++|-.++....+.++
T Consensus       284 ~-s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  284 E-STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             C-ccceeeecccCCceEEEEecccceeeeee
Confidence            2 2345566665443 344445556666665

>KOG1272|consensus

Probab=99.81  E-value=1.5e-19  Score=149.58  Aligned_cols=259  Identities=17%  Similarity=0.117  Sum_probs=213.7

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      .-..+.++.+  |.+|+.|+..|.+-.+|+.+.    ...-...|.++.|-.+.++++......++||| ..|..++.++
T Consensus       131 GPY~~~ytrn--GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRN--GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             CCeeeeecCC--ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehh
Confidence            3467889999  999999999999999999887    33445788999999999997778889999999 4567788887


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC
Q psy519           89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      .|. .+..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-...+-+|..   +|+|.+|.....
T Consensus       208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs---nGtVSlWSP~sk  283 (545)
T KOG1272|consen  208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS---NGTVSLWSPNSK  283 (545)
T ss_pred             hcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC---CceEEecCCCCc
Confidence            654 5889999998888999999999999999999999999888899999999999889999988   999999999999


Q ss_pred             ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy519          169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY  248 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  248 (351)
                      +++..+..|.++|.++++.++|.++++.+.|..++|||+++-..+.++..  ..+...+++|..|  +++.+....|.+|
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeee
Confidence            99988889999999999999999999999999999999999887777654  4467788888655  3344455689999


Q ss_pred             eCC-CCc---ee------eeeecceeEEecCCceeeeeecccee
Q psy519          249 GWP-SAS---KI------GIGVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       249 ~~~-~~~---~~------~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      .-. .+.   ..      ....+..+.|.|-...|..+-..|-.
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t  403 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT  403 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence            532 111   00      12567788888877777766666543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=8.5e-18  Score=149.16  Aligned_cols=225  Identities=13%  Similarity=0.088  Sum_probs=152.3

Q ss_pred             CCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCC---CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE
Q psy519           34 QKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRD---TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY  105 (351)
Q Consensus        34 ~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  105 (351)
                      +..|.+||.+..    +..|...+..+.|+|+|+. +..+.+   ..|++||+.+++.... .........++|+|||+.
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCE
Confidence            468999998765    4567788999999999987 554433   4699999988754322 222223346899999998


Q ss_pred             EEEEe-CCCcEEE--EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCE
Q psy519          106 IGTGS-YDKAVRL--WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPV  181 (351)
Q Consensus       106 l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i  181 (351)
                      |+.++ .+|.+.+  ||+.+++. ..+..+...+....|+|||+.|+.++..  ++...||++... .....+ .+..  
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~g~~~I~~~~~~~~~~~~l-~~~~--  335 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDR--SGSPQVYRMSASGGGASLV-GGRG--  335 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECC--CCCceEEEEECCCCCeEEe-cCCC--
Confidence            88764 5776555  56665553 4455566678889999999987766531  677788876532 222233 3333  


Q ss_pred             EEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeee-
Q psy519          182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP--SASKIGI-  258 (351)
Q Consensus       182 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~-  258 (351)
                      ....|+|||++++..+.++ +.+||+.+++...... .  .....+.|+|+|++|+.++.++...+|++.  +++.... 
T Consensus       336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            4578999999998887765 5669998887543221 1  233567899999999999999988877752  3433322 


Q ss_pred             ----eecceeEEecC
Q psy519          259 ----GVYPRCAAQPV  269 (351)
Q Consensus       259 ----~~~~~~~~s~~  269 (351)
                          ..+...+|+|-
T Consensus       412 ~~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 PGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCCCCCCCcccCCC
Confidence                23445667663

>KOG1523|consensus

Probab=99.81  E-value=7.5e-18  Score=133.48  Aligned_cols=221  Identities=20%  Similarity=0.259  Sum_probs=176.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCC-cEEEEeCCCcEEEEeC-C
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKG-LALTGSRDTTARLWSL-E   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~-~~~~~~~d~~i~vw~~-~   79 (351)
                      -..+|+|.+|+++  +..+|.+..+..+.||.....        +..|...|++++|+|.. ++++|+.|..-+||.. .
T Consensus         9 ~~~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            4579999999999  999999999999999988776        77899999999999998 5599999999999998 3


Q ss_pred             CC--eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee----EEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           80 QM--YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV----RVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        80 ~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      .+  ++...+..++...+++.|+|.++.|++|+....|.+|-.+..+--    ..-+.+.+.|.++.|+|++-++++|+.
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            33  455566778999999999999999999999999999988754421    223456788999999999999999998


Q ss_pred             CCCCCeEEEEEcc-----C-------------CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc-EEE
Q psy519          154 GSYDKAVRLWSIT-----D-------------GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR-VIS  214 (351)
Q Consensus       154 ~~~d~~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~  214 (351)
                         |+..++|..-     .             |+.+.++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+.
T Consensus       167 ---D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  167 ---DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             ---CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence               9999999642     1             12233443456789999999999999999999999999886654 233


Q ss_pred             EeeccCCCCEEEEEEcCCCCEE
Q psy519          215 RFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      ... ...-+..++.|-.+...+
T Consensus       244 ~~~-~~~lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  244 SVA-TAQLPLLSVSWISENSVV  264 (361)
T ss_pred             chh-hccCCceeeEeecCCcee
Confidence            332 223577777776554433

>KOG2110|consensus

Probab=99.80  E-value=2e-16  Score=127.74  Aligned_cols=233  Identities=13%  Similarity=0.144  Sum_probs=176.8

Q ss_pred             CccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCcee
Q psy519           49 HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD--KAVRLWSITDGASV  126 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~  126 (351)
                      ....+..+.|+.+..+++.+...-.++|+.+..............|-.+-|+.  .+++..+.+  ..+++++.+.+..+
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34567777898888885555555568888776544322223344566666764  466655554  45999998887777


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc---CCCCEEEEEECCCCcEEEEEc--CCCe
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD---HVSPVLSIAFSPCGKYLASGG--EDGL  201 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~--~dg~  201 (351)
                      ..+. ...+|.++.++.  +.|+++-    ...|+|||+++.+.+.++..   +...+.++.+++.+.+++.-+  ..|.
T Consensus        82 Ce~~-fpt~IL~VrmNr--~RLvV~L----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNR--KRLVVCL----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             EEEe-cCCceEEEEEcc--ceEEEEE----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence            7765 568899999964  4555554    45699999999998888754   334455555555666887533  4689


Q ss_pred             EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeee-------eecceeEEecCCcee
Q psy519          202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT-VQFYGWPSASKIGI-------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~  273 (351)
                      |.+||+.+-+....+. .|.+++.+++|+++|.+||++++.|+ ||||.+++|+++..       ..+.+++|+|++++|
T Consensus       155 V~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999999999999887 78899999999999999999999987 79999999998865       466789999999999


Q ss_pred             eeeeccceeeEEEeeece
Q psy519          274 ATLAANSRVRTLREMHEI  291 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~  291 (351)
                      ++.++.+++..+++-+..
T Consensus       234 ~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEecCCCeEEEEEecccc
Confidence            999999999988876544

>KOG1587|consensus

Probab=99.80  E-value=4.5e-17  Score=144.15  Aligned_cols=251  Identities=16%  Similarity=0.097  Sum_probs=182.7

Q ss_pred             CceEEEecCCc-----cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCee--eEE----eeCCCCCeEEEEEeC
Q psy519           35 KNLQSRYLPYY-----TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYP--LRI----FVGHKQDVTCARFHP  101 (351)
Q Consensus        35 ~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~i~~i~~~~  101 (351)
                      +.+.+|++...     ...-...|.++.|+|.. .+ +.|+.+|.|.+||+..+..  ...    ...|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            46899999876     22346789999999976 34 8889999999999987654  222    236889999999976


Q ss_pred             CCC--EEEEEeCCCcEEEEeCCCCcee------EEec------cCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEcc
Q psy519          102 KIT--YIGTGSYDKAVRLWSITDGASV------RVFS------DHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus       102 ~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      +..  -+++++.||.|..|+++.-...      ....      .....+++++|.+ +.+.+++|+.   +|.|.-=+..
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe---~G~v~~~~r~  378 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE---EGKVYKGCRK  378 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC---CcEEEEEecc
Confidence            444  4889999999999998753321      1111      1234678999988 5567888888   8988774422


Q ss_pred             CC---c-----eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC-CCcEEEEeeccCCCCEEEEEEcCCC-CEE
Q psy519          167 DG---A-----SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT-TGRVISRFHLQEHEPVTSLVWSVTG-ETL  236 (351)
Q Consensus       167 ~~---~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l  236 (351)
                      ..   .     ....+..|.++|+.+.++|=+..++..+.|..++||... ...++..+. .+...+.+++|||.. ..+
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEE
Confidence            21   1     123455688999999999966544444449999999987 555555543 344569999999965 467


Q ss_pred             EEEeCCCeEEEEeCCCCceee-------eeecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          237 VTGSLTGTVQFYGWPSASKIG-------IGVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +++..||.+.+||+.......       ....+.+.|++.|+.++++...|++..+++-+
T Consensus       458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            778889999999997543332       24556788999999999999999888877743

>KOG1188|consensus

Probab=99.80  E-value=1.4e-17  Score=132.94  Aligned_cols=195  Identities=19%  Similarity=0.283  Sum_probs=153.7

Q ss_pred             cEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeEEe--ccCC-CCeE
Q psy519           63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVF--SDHV-SPVL  137 (351)
Q Consensus        63 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-~~i~  137 (351)
                      .++++...|.|++||..+++.+..++++...+..++|..  ....+.+++.||+|++||++.......+  ..+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            348889999999999999999999999999999999976  4678899999999999999986654333  3333 4667


Q ss_pred             EEEEccCCCEEEEEecCC-CCCeEEEEEccCCce-eEEe-ccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          138 SIAFSPCGKYLASGGTGS-YDKAVRLWSITDGAS-VRVF-SDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~-~d~~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      +++.+-.++.+++|.... .+-.+.+||+|..+. +..+ ..|...|++++|+| +.++|++|+.||.|.+||++.....
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            777776788888886422 266799999998765 4443 57999999999999 5689999999999999999754322


Q ss_pred             EEe--eccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceee
Q psy519          214 SRF--HLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       214 ~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      -.+  ...+...|..+.|..++ +.+.+-+......+|+++.+....
T Consensus       202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            111  12345679999999876 457788889999999999887443

>KOG2139|consensus

Probab=99.80  E-value=1.5e-16  Score=128.18  Aligned_cols=237  Identities=16%  Similarity=0.195  Sum_probs=166.3

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC----
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ----   80 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~----   80 (351)
                      ...+.-++|++.  -.-+|++..|..|++|+-...     .......|++++|-|.+.- ++.+-.+-|.+|....    
T Consensus        98 ~~dlr~~aWhqH--~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQH--IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechh--hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc
Confidence            456778999998  777888899999999998765     3344578999999998744 4444446789998642    


Q ss_pred             Cee----------eEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEE
Q psy519           81 MYP----------LRIFVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        81 ~~~----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  149 (351)
                      ++.          +....+| .+|++++|.+||..+++++. |..|.+||+.++..+.......+.+.-+.||||+.+|+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence            111          1122344 68999999999999999886 57899999999987776655667888999999999999


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc---------------EEE
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR---------------VIS  214 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~  214 (351)
                      ++.-   |+..++|+..............+.|...+|+|+|++|+..+. |.-++|.+.-..               .+.
T Consensus       255 aAt~---davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~llia  330 (445)
T KOG2139|consen  255 AATC---DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIA  330 (445)
T ss_pred             Eecc---cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeec
Confidence            9988   999999965433222222233458999999999987765543 333455442110               000


Q ss_pred             Eee----ccC----CCCEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCc
Q psy519          215 RFH----LQE----HEPVTSLVWSVTGETLVTGSLTG--------TVQFYGWPSAS  254 (351)
Q Consensus       215 ~~~----~~~----~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~~~~~~~  254 (351)
                      .+.    ...    .++..+++|+|.|.+||+.-..+        .|..||.+..-
T Consensus       331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            000    011    25789999999999999865543        36667766543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=3.7e-17  Score=145.07  Aligned_cols=210  Identities=16%  Similarity=0.113  Sum_probs=148.4

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (351)
                      +..|.+||..... .+.+..+...+..++|+|||+.|+.++.+   ..|++||+.+++.... ....+....++|+|||+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence            4689999987654 45566778889999999999999887654   4699999988764322 22223345689999999


Q ss_pred             EEEEEecCCCCCeE--EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCC-cEEEEeeccCCC
Q psy519          147 YLASGGTGSYDKAV--RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTG-RVISRFHLQEHE  222 (351)
Q Consensus       147 ~l~~~~~~~~d~~i--~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~  222 (351)
                      .|+.+...  ++.+  ++||+.+++ ...+..+...+....|+|||+.|+..+ .+|...+|++... .....+  .+..
T Consensus       261 ~La~~~~~--~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~  335 (429)
T PRK01742        261 RLAFASSK--DGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG  335 (429)
T ss_pred             EEEEEEec--CCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC
Confidence            98876521  6654  455665555 445556666788899999999777554 5677788876432 222222  2222


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                        ....|+|||+.|+..+.++ +.+||+.+++....   .....+.|+|+|..++++..++....|.+++
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence              4578999999998887764 56699988865432   2335678999999999998888777676665

>KOG1523|consensus

Probab=99.79  E-value=2.7e-17  Score=130.40  Aligned_cols=201  Identities=19%  Similarity=0.215  Sum_probs=164.9

Q ss_pred             ccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC---eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-c
Q psy519           50 DMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM---YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-A  124 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~  124 (351)
                      ..+|+|.+|++|+.. +.+.....|.||.....   +..++++.|...|++++|+|..+.|++++.|..-++|....+ +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            578999999999977 88888889999998754   467888999999999999999999999999999999998433 2


Q ss_pred             --eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee----EEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          125 --SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV----RVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       125 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                        +...+..+....+++.|+|.++.|++|+.   ...|.+|-++..+--    +.-+.+...|.+++|+|++-++++|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSG---ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccC---ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence              34455568899999999999999999988   888999987654322    223456778999999999999999999


Q ss_pred             CCeEEEEEcCC------------------CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          199 DGLVLTHELTT------------------GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       199 dg~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |+..++|...-                  |+.+.++. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999986421                  12222222 334679999999999999999999999999987664

>KOG0644|consensus

Probab=99.78  E-value=2.6e-19  Score=157.97  Aligned_cols=228  Identities=23%  Similarity=0.303  Sum_probs=175.5

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.|.|+.|...|.+ ++|+.|..++||..++..+.....+|...|+.++.+.+...+++++.|..|++|.+..+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            7899999999999999988 999999999999999999999999999999999999988899999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC-Cc-------------eeEEe----------c-----
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD-GA-------------SVRVF----------S-----  175 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-~~-------------~~~~~----------~-----  175 (351)
                      ++..+.+|.+.|++++|+|-.    +.+.   ||++++||.+- ..             ....+          .     
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss~---dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSSD---DGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCCC---CCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence            999999999999999999965    4444   99999999871 10             00000          0     


Q ss_pred             -cCCCCEEEEEECCCCcEEEE-----------EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC-CEEEEEeCC
Q psy519          176 -DHVSPVLSIAFSPCGKYLAS-----------GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG-ETLVTGSLT  242 (351)
Q Consensus       176 -~~~~~i~~~~~~~~~~~l~~-----------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  242 (351)
                       ........++|....-.+++           +-.+..+.+|++.+++..+... .+...+..+.++|-. +...+++.|
T Consensus       339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhhccCC
Confidence             00011112233322222332           3334567788888887777654 566788999999954 455678999


Q ss_pred             CeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccce
Q psy519          243 GTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       243 g~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      |...|||+-.+.+++.     ..+....||++|..++....-|.
T Consensus       418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq  461 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ  461 (1113)
T ss_pred             CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence            9999999998877765     44456789999887766555543

>KOG4497|consensus

Probab=99.78  E-value=8.7e-17  Score=128.06  Aligned_cols=279  Identities=16%  Similarity=0.143  Sum_probs=195.9

Q ss_pred             CCCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEE
Q psy519            1 MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTAR   74 (351)
Q Consensus         1 ~~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~   74 (351)
                      ||++.+.+.-..   -..|||+  |+++|+.+.. .+.|-|.++.    +..--..|.-+.|..+..+  .....++.|.
T Consensus         1 M~Fte~fk~~~~---~c~fSp~--g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vq   74 (447)
T KOG4497|consen    1 MDFTELFKSLNP---FCSFSPC--GNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQ   74 (447)
T ss_pred             CChHHHHHhcCC---ceeECCC--CCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEE
Confidence            666666654322   4689999  9999998765 6777777765    1122356777899988866  4556788999


Q ss_pred             EEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           75 LWSLEQMYPLRIFVGHKQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      +|++...+-...+.....++..++|+|||+.| .+...+-.|.+|.+.+.+....- -.+..+..++|+|||++.+..+.
T Consensus        75 vwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   75 VWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             EEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeec
Confidence            99999888888888888899999999999655 55666899999999887654432 23455688999999999887763


Q ss_pred             C---------------------------------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          154 G---------------------------------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       154 ~---------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      .                                 -.+..+.+||---.-.+..+. ..-.+..+.|+|.+++|++|+.|+
T Consensus       154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccch
Confidence            0                                 123456667632222222222 234678899999999999999999


Q ss_pred             eEEEEEcCCCcEE------------------------------------------------------------EEeec--
Q psy519          201 LVLTHELTTGRVI------------------------------------------------------------SRFHL--  218 (351)
Q Consensus       201 ~i~i~d~~~~~~~------------------------------------------------------------~~~~~--  218 (351)
                      .+++.+--+.+..                                                            +.++.  
T Consensus       233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t  312 (447)
T KOG4497|consen  233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT  312 (447)
T ss_pred             hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence            8877542111000                                                            00000  


Q ss_pred             ---cCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcee----eeeecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          219 ---QEHEPVTSLVWSVTGETLVTGSL--TGTVQFYGWPSASKI----GIGVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       219 ---~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                         .....+.-++|++|..++++-.+  -+.+.+||++..+..    +..++....|.|....++......+   +.+|.
T Consensus       313 D~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr---LY~W~  389 (447)
T KOG4497|consen  313 DFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR---LYFWA  389 (447)
T ss_pred             CCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce---EEEEc
Confidence               00124677899999999998654  378999999987644    4477888999999988887777664   55555


Q ss_pred             c
Q psy519          290 E  290 (351)
Q Consensus       290 ~  290 (351)
                      .
T Consensus       390 p  390 (447)
T KOG4497|consen  390 P  390 (447)
T ss_pred             C
Confidence            4

>KOG0642|consensus

Probab=99.78  E-value=4.3e-18  Score=144.27  Aligned_cols=238  Identities=18%  Similarity=0.251  Sum_probs=179.0

Q ss_pred             cCCCccceEEEEECCCCc-EEEEeCCCcEEEEeCCC--------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy519           46 TSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSLEQ--------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVR  116 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~-~~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  116 (351)
                      ...|...|+.++|.+-.- +++++.|+.+++|+++.        .+++.+|.+|.++|.|+++.+++..+++|+.||+|+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~  369 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR  369 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence            456777888888888664 49999999999999932        357788999999999999999999999999999999


Q ss_pred             EEeCCCC----------ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc--CCCCEEEE
Q psy519          117 LWSITDG----------ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSI  184 (351)
Q Consensus       117 i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~  184 (351)
                      .|++...          .....+.+|.+.+..+++|+....|++++.   ||++++|+...... ..+..  ..+....+
T Consensus       370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~---DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS---DGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC---CceEEeeccCCcCc-cccCCccccCCcceE
Confidence            9976521          123456789999999999999999999998   99999999876655 22322  12233455


Q ss_pred             EECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccCC------CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          185 AFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQEH------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       185 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      .+-... ..+++...-+.-.++++.....+..+.....      ..+..+.++|...+.+++..|+.|+++|..+++.++
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            554322 2333333334444555555555444432111      357888999999999999999999999999998876


Q ss_pred             e-----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          258 I-----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       258 ~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      .     ..+.++++-|+|.+++.+..++.++.+++
T Consensus       526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             heeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            4     56678999999999999999986655444

>KOG1963|consensus

Probab=99.78  E-value=1.4e-15  Score=135.62  Aligned_cols=324  Identities=18%  Similarity=0.170  Sum_probs=219.8

Q ss_pred             CcCCCCccceEEeeecCCccc-cEEEEecCCCceEEEecCCc--------------------------------------
Q psy519            5 HLNHGDHKHFIQNSFKPETVE-DVLANLESQKNLQSRYLPYY--------------------------------------   45 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~-~~l~~~~~~~~i~i~~~~~~--------------------------------------   45 (351)
                      ...++|..++..+.+.|.... .++++.+.+|.|++|+....                                      
T Consensus        51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~  130 (792)
T KOG1963|consen   51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSIL  130 (792)
T ss_pred             hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceee
Confidence            456889999999999987212 46778899999999999876                                      


Q ss_pred             --------------------------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeE----EeeCCCCCeE
Q psy519           46 --------------------------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLR----IFVGHKQDVT   95 (351)
Q Consensus        46 --------------------------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~i~   95 (351)
                                                ...|.. -.++.+++.|.+.....+..+.+|...++....    .-..|...++
T Consensus       131 ~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t  209 (792)
T KOG1963|consen  131 TTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT  209 (792)
T ss_pred             eecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence                                      000000 123444455555444555667777776644111    1124666789


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee
Q psy519           96 CARFHPKITYIGTGSYDKAVRLWSITD----GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV  171 (351)
Q Consensus        96 ~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~  171 (351)
                      +.++||++++++++..||.|.+|.--.    ......+.-|..+|.+++|+++|.+|++|+.   .+.+.+|.+.+++ .
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~-k  285 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQLETGK-K  285 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEeecCCC-c
Confidence            999999999999999999999996432    1234556668899999999999999999999   9999999999988 5


Q ss_pred             EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee---cc-------CCCCEEEEEEcCCCCEEEEEeC
Q psy519          172 RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH---LQ-------EHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       172 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~-------~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +-+....++|..+.++||+.+.+...+|+.|.+..+.+......+.   ..       ..+-.+.++++|.-+.++..+.
T Consensus       286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~  365 (792)
T KOG1963|consen  286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH  365 (792)
T ss_pred             ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence            5566778899999999999999999999999998875543322221   11       1234678899997777888889


Q ss_pred             CCeEEEEeCCCCceeee----------------eecceeEEecCCceeeeeeccc-------eeeEEEeeeceeCceEEE
Q psy519          242 TGTVQFYGWPSASKIGI----------------GVYPRCAAQPVGFEAATLAANS-------RVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~----------------~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~  298 (351)
                      .|.|.+||+.+.+.+..                ..+.+++.+..|.+.+++..--       ....+|+|........+.
T Consensus       366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~  445 (792)
T KOG1963|consen  366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI  445 (792)
T ss_pred             CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence            99999999987665532                2334455566677666654321       133567776533322222


Q ss_pred             eeEE-----------EEecCCcee-eccEEEecCCccccceeeeeee
Q psy519          299 ESFI-----------VEIRPDKWY-EANLIVLDDDLKECNLETYSQM  333 (351)
Q Consensus       299 ~~~~-----------~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~  333 (351)
                      ..-.           ..+.+..+. ....+..+..+++|.+...+..
T Consensus       446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~  492 (792)
T KOG1963|consen  446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI  492 (792)
T ss_pred             EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence            1111           122222222 2223346788999988544443

>KOG1517|consensus

Probab=99.78  E-value=4.5e-17  Score=147.48  Aligned_cols=240  Identities=18%  Similarity=0.195  Sum_probs=176.2

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------cCCCccceEEEEECCC-CcEEEEeCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------TSGHDMTVWSVEACSK-GLALTGSRDT   71 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------~~~~~~~i~~~~~~~~-~~~~~~~~d~   71 (351)
                      -...|+.+.+-.+....++++++.||.|+||+-...                 ..+..+.=.-++|..+ |.+++++.-.
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence            456788888887633678999999999999975433                 1111111234566654 4567777788


Q ss_pred             cEEEEeCCCCeeeEEee-CCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCc---eeEEeccCCCC--eEEEEEccC
Q psy519           72 TARLWSLEQMYPLRIFV-GHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSP--VLSIAFSPC  144 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~~~  144 (351)
                      .|+|||.+..+.+..+. +....++++.-+. .|+.++.|..||.|++||.+...   .+...+.|...  |..+.+.+.
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            99999999877776654 3344566665433 57999999999999999998644   45666777776  999999986


Q ss_pred             CCE-EEEEecCCCCCeEEEEEccCCceeEEe--ccC---CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee-
Q psy519          145 GKY-LASGGTGSYDKAVRLWSITDGASVRVF--SDH---VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH-  217 (351)
Q Consensus       145 ~~~-l~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  217 (351)
                      |-- |++|+.   +|.|++||+|.......+  ..|   .+..+++..+++...+|+|+. +.|+||++. |+.+..+. 
T Consensus      1268 G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1268 GLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKY 1342 (1387)
T ss_pred             CCcceeeecc---CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccccc
Confidence            654 899988   999999999985222211  122   235899999999999999998 999999985 44443332 


Q ss_pred             -----ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          218 -----LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       218 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                           .+..+.+.+++|+|..-++|+|+.|..|.||..+...
T Consensus      1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence                 1222568999999999999999999999999887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.2e-15  Score=136.01  Aligned_cols=215  Identities=13%  Similarity=0.029  Sum_probs=151.2

Q ss_pred             CceEEEecCCc----cCCCccceEEEEECCCCcE-EEEe---CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE
Q psy519           35 KNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGS---RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI  106 (351)
Q Consensus        35 ~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  106 (351)
                      ..|.++|....    +..|...+....|+|||+. +..+   .+..|++||+.+++.. .+..+...+...+|+|||+.|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            36778887655    5567788999999999976 4443   2468999999887653 444556677789999999877


Q ss_pred             E-EEeCCCc--EEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          107 G-TGSYDKA--VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       107 ~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                      + +.+.++.  |++||+.+++. ..+..+........|+|||+.++..+.......|+++|+..++. ..+..+...+..
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~  338 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYST  338 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccC
Confidence            5 4455554  77889887765 44555556667899999999988776422234788899876554 334334455667


Q ss_pred             EEECCCCcEEEEEcCC---CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCc
Q psy519          184 IAFSPCGKYLASGGED---GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT------GTVQFYGWPSAS  254 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~~~~~  254 (351)
                      ..|+|||+.|+..+.+   ..|.+||+..+.. ..+.  ....+..+.|+|||+.|+..+.+      ..+.++|+..+.
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            8999999998876543   3688889865543 3332  22356788999999988775543      257888887654


Q ss_pred             e
Q psy519          255 K  255 (351)
Q Consensus       255 ~  255 (351)
                      .
T Consensus       416 ~  416 (435)
T PRK05137        416 E  416 (435)
T ss_pred             e
Confidence            4

>KOG2139|consensus

Probab=99.77  E-value=7.8e-16  Score=124.15  Aligned_cols=241  Identities=17%  Similarity=0.200  Sum_probs=165.1

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------------cCCCccceEEEEECCCCcE
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------------TSGHDMTVWSVEACSKGLA   64 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~i~~~~~~~~~~~   64 (351)
                      +.|.+.....|.+++|-|.. ++-|+.|+..| |.+|..+..                   ..+| .+|++++|.+||..
T Consensus       133 t~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~  209 (445)
T KOG2139|consen  133 TKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI  209 (445)
T ss_pred             ceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE
Confidence            34566677899999999973 45677776654 889987654                   2334 78999999999977


Q ss_pred             -EEEeC-CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc
Q psy519           65 -LTGSR-DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        65 -~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  142 (351)
                       ++++. |..|.|||+.++..+.......+.++-+.|+||+.+|+.+.-|+..++|+...........-..+.|...+|+
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs  289 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS  289 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence             77665 6789999999988765554455678899999999999999999999999654432222222234589999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCCc---------------eeEEec---------cCCCCEEEEEECCCCcEEEEEcC
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDGA---------------SVRVFS---------DHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~~---------------~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      |.|.+|+.+..    +.=.+|.+.-..               .+..+.         .-.+++.+++|.|.|.+|++.-.
T Consensus       290 pcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  290 PCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             CCCCEEEEEEc----CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            99999887763    444555442110               000110         12457889999999999998765


Q ss_pred             CC--------eEEEEEcCCCcEEEEee--ccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeCC
Q psy519          199 DG--------LVLTHELTTGRVISRFH--LQEHEPVTSLVWSV---TGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       199 dg--------~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .+        .|.+||.+..-......  .........++|+|   ++.+|..+=..|.+.-|++.
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            33        46778876544333221  11123356677766   46677667667777776653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=9.4e-16  Score=136.41  Aligned_cols=214  Identities=14%  Similarity=0.074  Sum_probs=146.6

Q ss_pred             CceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeC---CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE
Q psy519           35 KNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSR---DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI  106 (351)
Q Consensus        35 ~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  106 (351)
                      ..|.+||....    +..+...+...+|+|+|+. +..+.   +..|++||+.+++... +........+.+|+|||+.|
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            35888887654    4556678999999999976 55543   3469999998876543 33344445678999999977


Q ss_pred             E-EEeCCC--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          107 G-TGSYDK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       107 ~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                      + +.+.+|  .|++||+.+++.. .+..+.......+|+|||+.++.++.......|+++|+.+++... +.........
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~  340 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR  340 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence            5 445555  5999999887643 444455555678999999998877642112247777876665433 3223334557


Q ss_pred             EEECCCCcEEEEEcCCC---eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCc
Q psy519          184 IAFSPCGKYLASGGEDG---LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSAS  254 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~  254 (351)
                      ++|+|||++++..+.++   .|.+||+.+++.. .+.  +........|+|||++++..+.+   +.+.++++..+.
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            89999999988765433   6999999877654 332  22244567999999988876653   468888876543

>KOG2394|consensus

Probab=99.76  E-value=3.4e-17  Score=138.19  Aligned_cols=161  Identities=22%  Similarity=0.248  Sum_probs=133.5

Q ss_pred             ccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCC--cEEEEeCCCcEEEEeCCC-------------
Q psy519           25 EDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQ-------------   80 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~~~~-------------   80 (351)
                      +--|..|-..|.+++.+....         .......|+++.|-|.+  .++.+-.+|.+++||.+-             
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k  264 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK  264 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence            555777778888988887654         22234789999998865  457888899999997531             


Q ss_pred             -C--------------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCC
Q psy519           81 -M--------------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        81 -~--------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                       +              .++..+.-....|..++|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|||||
T Consensus       265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG  344 (636)
T KOG2394|consen  265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG  344 (636)
T ss_pred             CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence             1              1111222234578899999999999999999999999999999888888888999999999999


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  188 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  188 (351)
                      ++|++|++   |.-|.+|.+...+.+..-++|...|..++|.|
T Consensus       345 KyIvtGGE---DDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  345 KYIVTGGE---DDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cEEEecCC---cceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99999999   99999999999999999999999999999987

>KOG3881|consensus

Probab=99.76  E-value=3.5e-16  Score=127.24  Aligned_cols=243  Identities=14%  Similarity=0.156  Sum_probs=180.9

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      ...+..++|--+...+.|...+.+..+..+.....           ......+|..++. .++.+++|-.+|.+.+|..+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEecc
Confidence            45677777876622344554445666666655544           1222344444443 36788999999999999988


Q ss_pred             CCe----eeEEeeCCCCCeEEEEEeCCC-CEEEEEeCC--CcEEEEeCCCCceeEEeccC---------CCCeEEEEEcc
Q psy519           80 QMY----PLRIFVGHKQDVTCARFHPKI-TYIGTGSYD--KAVRLWSITDGASVRVFSDH---------VSPVLSIAFSP  143 (351)
Q Consensus        80 ~~~----~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~i~~~~~~~  143 (351)
                      .+.    .+..+..+ .++..+.-++.. ..+++|+..  ..+.+||+.+.+.+..-+.-         +-.++++.|-+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            432    23333333 345566666644 455668888  88999999988655543321         22467788888


Q ss_pred             C--CCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          144 C--GKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       144 ~--~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                      .  ...|++++.   -+.+++||.+.+ +++..+.-.+.+++++...|+++++++|..-|.+..||++.++.........
T Consensus       213 g~~~~~fat~T~---~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  213 GSPNYKFATITR---YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             CCCCceEEEEec---ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            7  788999988   999999999876 5677888888999999999999999999999999999999998887744456


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .+.++++..+|.++++++++.|..++|+|+++.+.++.
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            68999999999999999999999999999999776654

>KOG1310|consensus

Probab=99.76  E-value=1.2e-17  Score=141.35  Aligned_cols=210  Identities=21%  Similarity=0.286  Sum_probs=160.4

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC--cE-EEEeCCCc
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG--LA-LTGSRDTT   72 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~--~~-~~~~~d~~   72 (351)
                      ++..-+.||.+.|.+++|+.+  |.+|++|+.|-.+.|||....      ..+|...|.++.|-|..  .+ ++|..|..
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             chhhhhccccceecceeecCC--CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            344557899999999999999  999999999999999998765      67999999999999853  44 99999999


Q ss_pred             EEEEeCCC----------CeeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCcee----------EEecc
Q psy519           73 ARLWSLEQ----------MYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASV----------RVFSD  131 (351)
Q Consensus        73 i~vw~~~~----------~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~  131 (351)
                      |+++|+..          ....+.+..|...|..++-.|++ ..+.++++||+++-+|++.....          ..+..
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            99999974          23445567788999999999987 78999999999999999874211          11112


Q ss_pred             CCCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCc------------------eeEEec-cCC-----------CC
Q psy519          132 HVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGA------------------SVRVFS-DHV-----------SP  180 (351)
Q Consensus       132 ~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~-~~~-----------~~  180 (351)
                      ..-...|+..+|. ..+|++|+.   |-..++||.|...                  ++..+. +|-           ..
T Consensus       199 ~lielk~ltisp~rp~~laVGgs---dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~  275 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGS---DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC  275 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCC---CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence            2245678999995 567888888   9999999954210                  111111 111           12


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEe
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF  216 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  216 (351)
                      ++-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            566899999987777766678999999887655544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.6e-15  Score=134.31  Aligned_cols=217  Identities=15%  Similarity=0.101  Sum_probs=151.7

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY---DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ..|.++|....... .+..+...+...+|+|||+.|+..+.   +..+++||+.+++..... ........++|+|||+.
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCE
Confidence            36999998765443 34456678999999999998886543   357999999887643322 23344557899999998


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC-C--eEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED-G--LVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      |+.......+..|++||+.+++... +..+...+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+. ......
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~  333 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQN  333 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCc
Confidence            8875432113469999998876544 44444567789999999988776653 3  4555677666543 332 223345


Q ss_pred             EEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeee---ecceeEEecCCceeeeeeccceeeEEEeeecee
Q psy519          225 TSLVWSVTGETLVTGSLT---GTVQFYGWPSASKIGIG---VYPRCAAQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      ....|+|||++|+..+.+   ..|.+||+.+++.....   ......|+|||..+++.+.++....+.+++...
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            678999999999876553   35889999888655432   234678999999999999887766777776533

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.7e-15  Score=133.63  Aligned_cols=205  Identities=14%  Similarity=0.132  Sum_probs=146.0

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY---DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ..|.++|..... .+.+..+...+...+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+...+|+|||+.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            478899986544 4556678888999999999999887764   468999999887653 34445667788999999998


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-C--CeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-D--GLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      |+.......+..|++||+.+++. ..+..+........|+|||+.|+..+. +  ..|+++|+..++.. .+. .....+
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~  336 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRY  336 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcc
Confidence            76543321234588889887754 445555556677899999998887663 3  36888898765543 333 223456


Q ss_pred             EEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeee---eecceeEEecCCceeeeeeccc
Q psy519          225 TSLVWSVTGETLVTGSLT---GTVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ....|+|+|+.|+..+.+   ..|.+||+.++.....   .......|+|||+.+++.....
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~  398 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTP  398 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence            778999999999886653   3688889865543222   2345789999999988776643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.75  E-value=1.2e-14  Score=125.14  Aligned_cols=270  Identities=13%  Similarity=0.075  Sum_probs=175.7

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  144 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  144 (351)
                      ++-..++.|.|.|..+.+.+..+.........+.++||++++++++.||.|.++|+.+++.+..++.. ....++++++|
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~D   88 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPD   88 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--T
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCC
Confidence            56677899999999999999998765544456789999999999999999999999999999988754 45688999999


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEeccC-------CCCEEEEEECCCCcEEE-EEcCCCeEEEEEcCCCcEEEEe
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFSDH-------VSPVLSIAFSPCGKYLA-SGGEDGLVLTHELTTGRVISRF  216 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~  216 (351)
                      |++++++...  .+.+.++|.++.+.++.+...       ...+..+..+|....++ ..-+.+.|.+.|....+.+...
T Consensus        89 G~~~~v~n~~--~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   89 GKYVYVANYE--PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             TTEEEEEEEE--TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCEEEEEecC--CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            9999987642  899999999999888877532       34677888888877554 4555688999898776555433


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeee-------------------------------------
Q psy519          217 HLQEHEPVTSLVWSVTGETLVTG-SLTGTVQFYGWPSASKIGI-------------------------------------  258 (351)
Q Consensus       217 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~-------------------------------------  258 (351)
                      ............|+|++++++++ ..++.|-++|.++++....                                     
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i  246 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI  246 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence            33455678899999999987664 4467888888887654431                                     


Q ss_pred             ----------------------eecceeEEecCCceeeee-eccceeeEEEeeeceeCceEEE-e------eEEEEecCC
Q psy519          259 ----------------------GVYPRCAAQPVGFEAATL-AANSRVRTLREMHEIVGPVVVV-E------SFIVEIRPD  308 (351)
Q Consensus       259 ----------------------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~-~------~~~~~~~~~  308 (351)
                                            ....-+..+|++.++.+. ..+.....+.+++..+-+.... .      ....+|+++
T Consensus       247 g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  247 GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred             cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence                                  000124557777776665 2222234555555544432211 1      123689999


Q ss_pred             ceeeccEEEecC-CccccceeeeeeeeecC
Q psy519          309 KWYEANLIVLDD-DLKECNLETYSQMIPVP  337 (351)
Q Consensus       309 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~  337 (351)
                      |.+.....-..+ .+..+|.++..+...+|
T Consensus       327 G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            987655544444 68888888877766555

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.7e-15  Score=134.80  Aligned_cols=215  Identities=12%  Similarity=0.116  Sum_probs=149.4

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ..|.+||..... .+.+..+...+...+|+||++.|+..+.+   ..|++||+.+++.... ....+...+++|+|+|+.
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence            468999986543 44555677789999999999999887643   4699999988765433 333445567899999998


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      ++.......+..|++||+.+++. ..+..+.......+|+|||+.|+..+. +|  .|+++|+.+++.. .+.. .....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~-~g~~~  338 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF-QGNYN  338 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec-CCCCc
Confidence            87543221134699999988764 445455555567899999998887663 44  4777777666543 3322 22334


Q ss_pred             EEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeee---ecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          225 TSLVWSVTGETLVTGSLTG---TVQFYGWPSASKIGIG---VYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ...+|+|+|++|+..+.++   .|.+||+.+++.....   ......|+|+|+.++.....+....+.+++.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            5789999999998765443   6999999887655332   2345799999999888777655455555554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.3e-15  Score=134.94  Aligned_cols=214  Identities=14%  Similarity=0.140  Sum_probs=147.5

Q ss_pred             CccceEEeeecCCccccEEEEec---CCCceEEEecCCc----cCCCccceEEEEECCCCcE-E-EEeCCC--cEEEEeC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLE---SQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-L-TGSRDT--TARLWSL   78 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~---~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~-~~~~d~--~i~vw~~   78 (351)
                      +...+.+.+||||  |+.|+..+   .+..+.+|++..+    +....+.+..+.|+|||+. + +.+.++  .|++||+
T Consensus       197 ~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        197 SPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            4567889999999  99998754   2457889998766    2223344557899999976 3 334444  5899999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-C--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD-K--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ++++..+ +..+...+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+...........|+|+|++++......
T Consensus       275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccC
Confidence            8876554 33444567889999999988777654 4  4555577666543 3333444556789999999998876522


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCe---EEEEEcCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      ....|.+||+.+++.. .+... .......|+|||++|+.++.++.   +.++++ ++.....+. .+.+.+...+|+|
T Consensus       353 g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~-~~~~~~~~p~Wsp  427 (429)
T PRK03629        353 GQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP-ATDGQVKFPAWSP  427 (429)
T ss_pred             CCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc-cCCCCcCCcccCC
Confidence            2356899999887643 33322 22346789999999998887654   677777 455555554 3456788888887

>KOG2394|consensus

Probab=99.74  E-value=9e-16  Score=129.74  Aligned_cols=210  Identities=21%  Similarity=0.245  Sum_probs=151.4

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEEC-----CCC-cEEEEeCCCcEEEEeCC
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEAC-----SKG-LALTGSRDTTARLWSLE   79 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~-----~~~-~~~~~~~d~~i~vw~~~   79 (351)
                      ....++-.  |++|+..- ...+++|+....         ..-......|-+|+     +.+ .++.|-.-|.+.+.|..
T Consensus       127 ~~~~~~~~--gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  127 TNTNQSGK--GDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             eeccccCC--CCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            34444445  78887753 346888888743         11111222333442     333 34777778899999876


Q ss_pred             CCeeeEEee----CCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCC--------------ce--------------e
Q psy519           80 QMYPLRIFV----GHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDG--------------AS--------------V  126 (351)
Q Consensus        80 ~~~~~~~~~----~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~--------------~~--------------~  126 (351)
                      ..+..+.+.    -.+..++|+.|-|. ...++.+-.+|.+++||....              ..              +
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            532222121    13468999999884 456666778999999976311              11              1


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      ....-..+.|..++|+|||++||+.+.   ||.++|||..+.+.+..++..-+...|++|+|||++|++|++|..|.||.
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEec---CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence            111113457888999999999999999   99999999999888888877778899999999999999999999999999


Q ss_pred             cCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          207 LTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      +...+.+..-. .|.+.|..++|.|
T Consensus       361 f~erRVVARGq-GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQ-GHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEecc-ccccceeeEeecc
Confidence            99998888764 6779999999987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=1.1e-14  Score=125.44  Aligned_cols=250  Identities=13%  Similarity=0.118  Sum_probs=163.3

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEee
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      ..+.|+||  |+++.+.+.||.|.++|+.+.    .-.-.....++++++||++  ++....+.+.++|.++.++++.+.
T Consensus        40 ~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   40 AGLKFSPD--GRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eEEEecCC--CCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            44789999  999999999999999999887    1122334678999999988  445578999999999999888775


Q ss_pred             CC-------CCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeE-EeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           89 GH-------KQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        89 ~~-------~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      ..       ...+.++..+|....++..-. .+.|.+.|....+.+. .............|+|++++++++..+  +..
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~--sn~  195 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG--SNK  195 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG--GTE
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc--cce
Confidence            32       346778888888775555544 5889888987655432 222345677889999999998876543  567


Q ss_pred             EEEEEccCCceeEEe-------------------------------------------------------ccCCCCEEEE
Q psy519          160 VRLWSITDGASVRVF-------------------------------------------------------SDHVSPVLSI  184 (351)
Q Consensus       160 i~i~d~~~~~~~~~~-------------------------------------------------------~~~~~~i~~~  184 (351)
                      |.++|.++++....+                                                       .....+ .-+
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi  274 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI  274 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence            778887665433221                                                       111122 356


Q ss_pred             EECCCCcEEEEE----cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeee
Q psy519          185 AFSPCGKYLASG----GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT--GTVQFYGWPSASKIGI  258 (351)
Q Consensus       185 ~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~  258 (351)
                      ..+|+++++.+.    ...+.|.++|.++.+....+.......+..+.|+++|+.+.....+  +.|.+||..+.+.+..
T Consensus       275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence            779999999988    4458899999999987777754444469999999999977665443  4799999999998887


Q ss_pred             eecceeEEecCCcee
Q psy519          259 GVYPRCAAQPVGFEA  273 (351)
Q Consensus       259 ~~~~~~~~s~~~~~~  273 (351)
                      .+    ..+|.|.+.
T Consensus       355 i~----~~tP~G~f~  365 (369)
T PF02239_consen  355 IP----VPTPTGKFN  365 (369)
T ss_dssp             EE------SEEEEEE
T ss_pred             EE----eeCCCeEec
Confidence            66    556666543

...

>KOG1334|consensus

Probab=99.74  E-value=6.2e-17  Score=135.08  Aligned_cols=285  Identities=17%  Similarity=0.178  Sum_probs=208.9

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC---cEEEEeCCCc
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG---LALTGSRDTT   72 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~---~~~~~~~d~~   72 (351)
                      ++-..+.+|.+.|..|.|...  |+.|++|+.|..|.+||+...      ..+|...|....|-|..   .+++++.||.
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~--Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQR--GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhhhcccCCCCccceeeeccc--CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            445667889999999999999  999999999999999999887      67888888888888754   4599999999


Q ss_pred             EEEEeCCC-Cee--eEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEe---ccCCC---CeEEEEEc
Q psy519           73 ARLWSLEQ-MYP--LRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVF---SDHVS---PVLSIAFS  142 (351)
Q Consensus        73 i~vw~~~~-~~~--~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~i~~~~~~  142 (351)
                      +++=.+.. +.+  ...+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++.+.+...+   ..+..   ....++.+
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            99987653 322  34556799999999998854 57889999999999999887654433   22233   56788999


Q ss_pred             cCCC-EEEEEecCCCCCeEEEEEccCCce------eEEec------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          143 PCGK-YLASGGTGSYDKAVRLWSITDGAS------VRVFS------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       143 ~~~~-~l~~~~~~~~d~~i~i~d~~~~~~------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      |... .+++++.   |..+++||.+.-..      +..+-      .....|++++|+.++.-++++..|-.|+++.-.-
T Consensus       291 P~nt~~faVgG~---dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  291 PRNTNEFAVGGS---DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             CCCccccccCCh---hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            9554 7889988   99999999875322      12221      2234689999998887777777788899985322


Q ss_pred             --C----------cEEEEeeccCC--CCEEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecC
Q psy519          210 --G----------RVISRFHLQEH--EPVTSLV-WSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPV  269 (351)
Q Consensus       210 --~----------~~~~~~~~~~~--~~v~~~~-~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~  269 (351)
                        |          ...+.....|.  ..|..+- |-|...++++|+.-|.|.||+-.+++.+..     ..++++.-+|-
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence              2          12222112232  3466665 467889999999999999999999887754     23444444444


Q ss_pred             CceeeeeeccceeeEEEeeeceeCc
Q psy519          270 GFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      -   -+.++.|.+.-+|+|.....+
T Consensus       448 ~---PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  448 L---PVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             C---chhhccCCccceeeecCCccc
Confidence            3   345566677788899865554

>KOG4227|consensus

Probab=99.74  E-value=9.2e-16  Score=125.01  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=174.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC------CeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ------MYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRL  117 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  117 (351)
                      ..+|.+.|+++.|+.++++ ++|+.|..+++|+++.      .+++.... .|...|.|++|.....++++|..+++|.+
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            6789999999999999998 9999999999999853      35554443 45589999999998899999999999999


Q ss_pred             EeCCCCceeEEecc--CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-e--eEEeccCCCCEEEEEECCC-Cc
Q psy519          118 WSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-S--VRVFSDHVSPVLSIAFSPC-GK  191 (351)
Q Consensus       118 ~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~--~~~~~~~~~~i~~~~~~~~-~~  191 (351)
                      .|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.   ++.|.+||.+... .  +............+.|+|. -.
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~---~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR---AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEec---CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999988877742  3358999999999999999988   9999999998754 2  2223344556778899995 46


Q ss_pred             EEEEEcCCCeEEEEEcCCCcEE-EEe----eccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--------
Q psy519          192 YLASGGEDGLVLTHELTTGRVI-SRF----HLQE-HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG--------  257 (351)
Q Consensus       192 ~l~~~~~dg~i~i~d~~~~~~~-~~~----~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--------  257 (351)
                      +|++.+..+-+.+||.+..+.. ...    .++. ...-.++.|+|+|..+++.-....-.+||+-+.....        
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            7888888888999998754321 111    1111 1234678999999988877666666777776643221        


Q ss_pred             ----eeecceeEEecCCceeeeeeccceeeEEEe
Q psy519          258 ----IGVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       258 ----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                          ...+.++.|--+-. +++++.+-.+.+|++
T Consensus       289 GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL  321 (609)
T ss_pred             cceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence                23445566654433 555555555555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=6.4e-15  Score=130.67  Aligned_cols=212  Identities=15%  Similarity=0.132  Sum_probs=143.5

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++.... ....+.+...+|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            467777874 34444455677789999999999999877643   3599999998875443 334455678999999998


Q ss_pred             EEEE-ecCCCCCeEEEE--EccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEE--cCCCcEEEEeeccCC
Q psy519          148 LASG-GTGSYDKAVRLW--SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHE--LTTGRVISRFHLQEH  221 (351)
Q Consensus       148 l~~~-~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~~~~~~~~~~  221 (351)
                      |+.. ..   ++...||  |+..+. ...+..+........|+|||+.|+..+. +|...+|.  +.++.. ..+... .
T Consensus       254 la~~~~~---~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g  327 (427)
T PRK02889        254 LAVALSR---DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-G  327 (427)
T ss_pred             EEEEEcc---CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-C
Confidence            8754 44   6655555  554443 4555555555667899999998876554 45555554  444443 223222 2


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeee---eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          222 EPVTSLVWSVTGETLVTGSLTG---TVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      .......|+|||++|+..+.++   .|.+||+.+++....   .......|+|+|+.+++....+....+.+.+.
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            2345688999999998877654   699999988765433   12356799999999888887665554554443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=1.5e-15  Score=119.05  Aligned_cols=140  Identities=21%  Similarity=0.407  Sum_probs=104.3

Q ss_pred             cEEEEeCCC-CeeeEEeeC-CCCCeEEEEEeCCCCEEEEE--eCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           72 TARLWSLEQ-MYPLRIFVG-HKQDVTCARFHPKITYIGTG--SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        72 ~i~vw~~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ...+|.++. ......+.- ..++|.+++|+|+++.+++.  ..++.+.+||++ ++.+..+.  ...+..+.|+|+|++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRF  114 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCE
Confidence            344454422 223334432 34579999999999987554  356799999997 66666664  467788999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC------CCeEEEEEcCCCcEEEEee
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE------DGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  217 (351)
                      +++++.+...|.|.+||.++.+.+...+.  ..+..++|+|||+++++++.      |+.++||+. .|+.+....
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence            99998755568899999998888777643  34789999999999998864      678999998 577766553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=1.5e-15  Score=119.03  Aligned_cols=156  Identities=21%  Similarity=0.365  Sum_probs=113.4

Q ss_pred             EEEEEeCCCCEEEEEeC----------CCcEEEEeCCC-CceeEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           95 TCARFHPKITYIGTGSY----------DKAVRLWSITD-GASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        95 ~~i~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ..+.|+|+|++|++-..          -+...+|.++. +.....+. ...++|.+++|+|+|+.+++... ..+..|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-SMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-cCCcccEE
Confidence            35789999987765433          13455555532 22333332 23457999999999999876532 22679999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC---CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE---DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      ||++ ++.+..+.  ...+..+.|+|+|+++++++.   .|.+.+||.++.+.+....   +..+..++|+|+|++++++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCCEEEEE
Confidence            9996 66666664  457789999999999998864   4679999999888876653   3457899999999999987


Q ss_pred             eC------CCeEEEEeCCCCceeee
Q psy519          240 SL------TGTVQFYGWPSASKIGI  258 (351)
Q Consensus       240 ~~------dg~i~i~~~~~~~~~~~  258 (351)
                      +.      |+.++||++. |+.+..
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EeccceeccccEEEEEec-CeEeEe
Confidence            64      7889999986 445443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=8.4e-15  Score=129.95  Aligned_cols=209  Identities=16%  Similarity=0.119  Sum_probs=138.3

Q ss_pred             CceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeC---CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE
Q psy519           35 KNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSR---DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI  106 (351)
Q Consensus        35 ~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  106 (351)
                      ..|.++|....    ...+...+.+.+|+|||+. +..+.   ...|.+||+.+++... +..........+|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            35667776543    3466778999999999976 44443   2459999999887543 33344556789999999988


Q ss_pred             E-EEeCCCcEEEEe--CCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE--EccCCceeEEeccCCCCE
Q psy519          107 G-TGSYDKAVRLWS--ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW--SITDGASVRVFSDHVSPV  181 (351)
Q Consensus       107 ~-~~~~dg~i~i~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i  181 (351)
                      + +.+.+|...+|.  +..+. ...+..+........|+|||+.++..+..  ++...+|  ++.+++.. .+.......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~--~g~~~Iy~~~~~~g~~~-~lt~~g~~~  330 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR--GGAPQIYRMPASGGAAQ-RVTFTGSYN  330 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC--CCCcEEEEEECCCCceE-EEecCCCCc
Confidence            6 456677755554  44444 44555455556678999999998876531  3445555  44444432 222222334


Q ss_pred             EEEEECCCCcEEEEEcCCC---eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q psy519          182 LSIAFSPCGKYLASGGEDG---LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG---TVQFYGWP  251 (351)
Q Consensus       182 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~  251 (351)
                      ....|+|||++++..+.++   .|.+||+.+++... +.  .........|+|||+.|+.++.++   .+.+.++.
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            4678999999998776544   69999998876543 32  222346789999999988877643   35555654

>KOG1310|consensus

Probab=99.73  E-value=9.8e-17  Score=135.86  Aligned_cols=217  Identities=21%  Similarity=0.288  Sum_probs=161.0

Q ss_pred             eEEEecCCccCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe-eCCCCCeEEEEEeC--CCCEEEEEeCC
Q psy519           37 LQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF-VGHKQDVTCARFHP--KITYIGTGSYD  112 (351)
Q Consensus        37 i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~i~~i~~~~--~~~~l~~~~~d  112 (351)
                      ++-.+++..+.+|++-|++++|+.+|.+ ++|+.|-.+.|||.-..+.+..+ .+|...|.+++|-|  +.+++++|..|
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            4444455558999999999999999998 99999999999999887777666 58999999999998  55789999999


Q ss_pred             CcEEEEeCCCC----------ceeEEeccCCCCeEEEEEccCC-CEEEEEecCCCCCeEEEEEccCCcee----------
Q psy519          113 KAVRLWSITDG----------ASVRVFSDHVSPVLSIAFSPCG-KYLASGGTGSYDKAVRLWSITDGASV----------  171 (351)
Q Consensus       113 g~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~----------  171 (351)
                      ..|++||+...          +....+.-|...|..++..|++ +.+.++++   ||.|+-||+|.....          
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE---DGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE---DGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC---CcceeeecccCCccCCccccccHHH
Confidence            99999999742          2344455688889999999988 77889888   999999999874211          


Q ss_pred             EEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCC--------c----------EEEEeeccCC-----------
Q psy519          172 RVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTG--------R----------VISRFHLQEH-----------  221 (351)
Q Consensus       172 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~~-----------  221 (351)
                      ..+...--...++..+| +..+|++|+.|-..++||.+..        .          ++..+...|-           
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            11111223467899999 4578999999999999995321        0          1122211111           


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      ..++-+.|+|+|.-|++.-..-.|+++|+..++..
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            12566788888877666555557888888776544

>KOG1240|consensus

Probab=99.73  E-value=2.1e-15  Score=138.82  Aligned_cols=248  Identities=15%  Similarity=0.166  Sum_probs=175.6

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCCcE-EEEeCC
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKGLA-LTGSRD   70 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~~~-~~~~~d   70 (351)
                      +||.. |...+..++.++.+ +.++++|+.||+|++|+....            ......++.++...+.+.. +.++.|
T Consensus      1042 AhL~E-hs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1042 AHLHE-HSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             ehhhh-ccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            34444 67777788887761 599999999999999999876            2224567888888888866 889999


Q ss_pred             CcEEEEeCCCC--e-----eeEEeeCCC-CC-eEEEEEeC-CCC-EEEEEeCCCcEEEEeCCCCceeEEec--cCCCCeE
Q psy519           71 TTARLWSLEQM--Y-----PLRIFVGHK-QD-VTCARFHP-KIT-YIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVL  137 (351)
Q Consensus        71 ~~i~vw~~~~~--~-----~~~~~~~~~-~~-i~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~  137 (351)
                      |.|++.+++..  +     +.+....+. +. +..-+|.. ... .++.+..-+.|..||+++......++  ...+.|+
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            99999998752  1     112222222 22 33333332 233 67788888999999999876555443  3457899


Q ss_pred             EEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCCCCEEEEEECCC---CcEEEE-Ec-CCCeEEEEEcCCCc
Q psy519          138 SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPC---GKYLAS-GG-EDGLVLTHELTTGR  211 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~-~~-~dg~i~i~d~~~~~  211 (351)
                      +++.+|.+++++.|..   .|.+.+||+|=+.++.... ++..+++.+..+|-   ....++ ++ ..+.|.+|++.+|.
T Consensus      1200 Si~idp~~~WlviGts---~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTS---RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             EEEecCCceEEEEecC---CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            9999999999999999   9999999999888777654 35578888888772   234444 43 57789999999886


Q ss_pred             EEEEeeccCC------------------CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          212 VISRFHLQEH------------------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       212 ~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      .-..+.....                  -.....++...+.++.+|+.|..|+.||....+..
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            6555543211                  01122333344668899999999999998765443

>KOG2321|consensus

Probab=99.72  E-value=4.4e-15  Score=126.62  Aligned_cols=270  Identities=14%  Similarity=0.091  Sum_probs=196.5

Q ss_pred             CCccceEEeeecCCccccEE-EEecCCCceEEEecCCc---cCCCc-cceEEE-EECCCC-cEEEEeCCCcEEEEeCCCC
Q psy519            9 GDHKHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY---TSGHD-MTVWSV-EACSKG-LALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~---~~~~~-~~i~~~-~~~~~~-~~~~~~~d~~i~vw~~~~~   81 (351)
                      .++..-+.+..+||  |+|+ |+|...-.|++||+.+.   +..|. ..+..+ -.+.|- +.+.-..|.+|.+.... |
T Consensus        49 e~p~ast~ik~s~D--GqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPD--GQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G  125 (703)
T ss_pred             CCccccceeEecCC--CcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence            35566688999999  9986 56667889999999887   33332 233333 333332 22555667777665432 2


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ... .+. -...-..++++.-..-|+.++....|+-++++.|..+..+....+.+.++..++-..+|++|+.   +|.|.
T Consensus       126 ~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~---~g~VE  200 (703)
T KOG2321|consen  126 RHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE---DGVVE  200 (703)
T ss_pred             eee-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc---CceEE
Confidence            211 111 1122345666554444555666778999999999999998877899999999999999999999   99999


Q ss_pred             EEEccCCceeEEecc------CCC-----CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          162 LWSITDGASVRVFSD------HVS-----PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       162 i~d~~~~~~~~~~~~------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                      .||.+....+..+..      |.+     .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.....-+|..+.|.
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            999998766655432      222     489999999999999999999999999999988876554444689999997


Q ss_pred             CC--CCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          231 VT--GETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       231 ~~--~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      +.  ++.+++. ....++|||-.+|+....    ..++.+++-|++..+.++..++.+..+.+
T Consensus       281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             ccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            75  4455554 457899999999988765    45677888898888888888777666554

>KOG3881|consensus

Probab=99.72  E-value=1e-15  Score=124.57  Aligned_cols=214  Identities=20%  Similarity=0.243  Sum_probs=165.7

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCccCCCc---------cceEEEEECCCCc-E-EEEeCC--CcEEE
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHD---------MTVWSVEACSKGL-A-LTGSRD--TTARL   75 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---------~~i~~~~~~~~~~-~-~~~~~d--~~i~v   75 (351)
                      ....+|..++..    ...|+++..+|.+++|....+. .|+         ..+..+.-++... + ++|+..  ..+.+
T Consensus       103 l~~~~I~gl~~~----dg~Litc~~sG~l~~~~~k~~d-~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  103 LGTKSIKGLKLA----DGTLITCVSSGNLQVRHDKSGD-LHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccchhhc----CCEEEEEecCCcEEEEeccCCc-cccccceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence            344555555555    3467888899999999987541 122         2333444444433 3 678888  88999


Q ss_pred             EeCCCCeeeEEeeCCC---------CCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEcc
Q psy519           76 WSLEQMYPLRIFVGHK---------QDVTCARFHPK--ITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~---------~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~  143 (351)
                      ||++..+++..-+.-.         --++++.|-+.  ...|++++.-+.+++||.+.+ +++..+.-...+++++...|
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            9999886665443221         13567888876  789999999999999999865 46777877789999999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEE-eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE  222 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  222 (351)
                      +++++++|..   -+.+..||++.++.+.. +++..+.|+++..+|...++++++-|..++|+|+.+.+.+.....  ..
T Consensus       258 ~gn~Iy~gn~---~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks  332 (412)
T KOG3881|consen  258 SGNFIYTGNT---KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--KS  332 (412)
T ss_pred             CCcEEEEecc---cchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--hc
Confidence            9999999998   99999999999988877 888899999999999999999999999999999999777765533  45


Q ss_pred             CEEEEEEcCC
Q psy519          223 PVTSLVWSVT  232 (351)
Q Consensus       223 ~v~~~~~~~~  232 (351)
                      .++.+.+.++
T Consensus       333 ~lt~il~~~~  342 (412)
T KOG3881|consen  333 RLTFILLRDD  342 (412)
T ss_pred             cccEEEecCC
Confidence            5677777654

>KOG1272|consensus

Probab=99.72  E-value=2.6e-17  Score=136.49  Aligned_cols=227  Identities=13%  Similarity=0.183  Sum_probs=187.9

Q ss_pred             ccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q psy519           50 DMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV  128 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  128 (351)
                      ......+.++.+|.. +.|+..|.+..+|..+++....+. -.+.|..+.|-.+.+++|++ ....+++|| ..|..+..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC  205 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC  205 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence            344567899999988 999999999999999998877764 45678999998888888775 467899999 56777777


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      ++.+ ..|..+.|-|..-+|++++.   .|.++--|+.+|+.+..+....+.+..++-+|-...+-+|..+|.|.+|...
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~---~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASE---AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             hhhc-Cchhhhcccchhheeeeccc---CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence            7754 67888999999888888888   9999999999999999998888999999999998999999999999999998


Q ss_pred             CCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeE
Q psy519          209 TGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      ..+++..+. .|.++|.++++.++|+++++.+.|..++|||++....++.    .....+++|..|.  .+++.+..+.+
T Consensus       282 skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl--LA~~~G~~v~i  358 (545)
T KOG1272|consen  282 SKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL--LALSYGDHVQI  358 (545)
T ss_pred             CcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc--eeeecCCeeee
Confidence            888777663 6889999999999999999999999999999998876654    3334566665554  34444444444


Q ss_pred             EE
Q psy519          285 LR  286 (351)
Q Consensus       285 ~~  286 (351)
                      |+
T Consensus       359 w~  360 (545)
T KOG1272|consen  359 WK  360 (545)
T ss_pred             eh
Confidence            43

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=8.9e-14  Score=122.85  Aligned_cols=229  Identities=18%  Similarity=0.134  Sum_probs=145.0

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE--E--EEeCC--CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA--L--TGSRD--TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY  105 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~--~~~~d--~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  105 (351)
                      .|.+.|.+..    +......+....|+|||+.  +  +...+  ..|.+.++.+++.... ..........+|+|||+.
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCE
Confidence            5666666544    3344556778899999852  2  44444  3588889887764433 233444557899999998


Q ss_pred             EEEEeC-CC----cEEEEeCCCC---ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe--EEEEEccC-CceeEEe
Q psy519          106 IGTGSY-DK----AVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA--VRLWSITD-GASVRVF  174 (351)
Q Consensus       106 l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~--i~i~d~~~-~~~~~~~  174 (351)
                      |+..+. +|    .+..|++..+   +..+............+|+|||+.|+..+..  ++.  |+++++.. +.....+
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~--~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK--DGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECC--CCCceEEEEECcccccceEEe
Confidence            877653 22    3444676653   3333333223344678999999988876532  454  55555542 2334445


Q ss_pred             ccCCCCEEEEEECCCCcEEEEEcCC---CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEE
Q psy519          175 SDHVSPVLSIAFSPCGKYLASGGED---GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL---TGTVQFY  248 (351)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~  248 (351)
                      ..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +. .....+....|+|||+.|+....   ...|+++
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-cc-CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            4455567788999999988876543   469999998887543 32 22345678999999998875443   3578889


Q ss_pred             eCCCCceeee----eecceeEEecC
Q psy519          249 GWPSASKIGI----GVYPRCAAQPV  269 (351)
Q Consensus       249 ~~~~~~~~~~----~~~~~~~~s~~  269 (351)
                      |+.+++....    ......+|+|-
T Consensus       401 dl~~g~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        401 SLITKKTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             ECCCCCEEEeecCCCcccCceecCC
Confidence            9887765443    22345566653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.69  E-value=4.4e-14  Score=125.90  Aligned_cols=214  Identities=13%  Similarity=0.134  Sum_probs=150.3

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ..|.++|..... .+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            458888876444 34455566678899999999999887654   4799999988765433 334556677999999998


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      |+.......+..|++||+.+++. ..+..+........|+|||+.|+..+. ++  .|+++|+.+++.. .+. ......
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~  324 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYN  324 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCc
Confidence            87654322244699999887654 334444444557799999998876654 33  6888888776643 332 234456


Q ss_pred             EEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeee---ecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          225 TSLVWSVTGETLVTGSLTG---TVQFYGWPSASKIGIG---VYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ..+.|+|+|++++.++.++   .|.+||+.++......   ......|+|+|..+++....+....+.+..
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence            7889999999999888775   8999999876543321   234568999999988888776655555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497|consensus

Probab=99.69  E-value=3e-14  Score=113.82  Aligned_cols=259  Identities=16%  Similarity=0.201  Sum_probs=180.4

Q ss_pred             ceEEeeecCCccccEEEE-ecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeee
Q psy519           13 HFIQNSFKPETVEDVLAN-LESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~-~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~   84 (351)
                      .|.-+.|+.+  .-+++. ...++.|.+|++...     .......+.++.|+|+|+.  .+...+-.|.||.+.+.+..
T Consensus        50 ki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   50 KIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             Hhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            4566788888  666554 466889999999877     5566778999999999954  67788999999999886654


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCC------------------------------------CcEEEEeCCCCceeEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYD------------------------------------KAVRLWSITDGASVRV  128 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~~~~~~~~  128 (351)
                       .++-.+..+..++|+|||++.+..++.                                    ..+.+||---.-.+..
T Consensus       128 -~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  128 -LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             -EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence             333345567889999999988766542                                    1233443211111111


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce--------------------------------------
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS--------------------------------------  170 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~--------------------------------------  170 (351)
                      . ...-.+..++|+|.++++++|+.   |+.+++.+--+.+.                                      
T Consensus       207 Y-e~~lG~k~v~wsP~~qflavGsy---D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~  282 (447)
T KOG4497|consen  207 Y-ERGLGLKFVEWSPCNQFLAVGSY---DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT  282 (447)
T ss_pred             e-eeccceeEEEeccccceEEeecc---chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence            1 12356788999999999999998   98888765311100                                      


Q ss_pred             ----------------------eEEec------cCCCCEEEEEECCCCcEEEEEcC--CCeEEEEEcCCCcEEEEeeccC
Q psy519          171 ----------------------VRVFS------DHVSPVLSIAFSPCGKYLASGGE--DGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       171 ----------------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                                            +..++      .....+.-++|++|..++++-..  -+.+.+||+++.+.-..+  ..
T Consensus       283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL--iQ  360 (447)
T KOG4497|consen  283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL--IQ  360 (447)
T ss_pred             ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh--hh
Confidence                                  00111      11234667999999999988754  357999999877655444  34


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccc
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ..+|....|+|....|+.+.....+++|.......+..    ..+..+.|..+|..++..+.|.
T Consensus       361 k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            56899999999988888888888999998776444432    4566778888887766655553

>KOG2321|consensus

Probab=99.69  E-value=2.1e-14  Score=122.52  Aligned_cols=246  Identities=14%  Similarity=0.113  Sum_probs=180.2

Q ss_pred             cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      ...+....+.|..+|||++  ++|...-.|++||+..-.....-.-....|.-.-.+.|-..++.--.|.+|-+..- -|
T Consensus        47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G  125 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG  125 (703)
T ss_pred             hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence            4467788889999999988  78888999999999876543322222344555555666666666667888866542 23


Q ss_pred             ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      .... ++ -+..-..++++.-..-|+.++.   ...|+-+++..|+-+..+....+.++++..++-..+|++|+.+|.|.
T Consensus       126 ~hy~-~R-IP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  126 RHYR-TR-IPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             eeee-ee-cCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence            2221 11 2233456777654444444445   67899999999999999888888999999999889999999999999


Q ss_pred             EEEcCCCcEEEEeeccCC----------CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEe
Q psy519          204 THELTTGRVISRFHLQEH----------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQ  267 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s  267 (351)
                      +||.+....+..+.....          ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..      .++..+.|.
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            999998877666643222          2499999999999999999999999999999887754      566778887


Q ss_pred             cCCceeeeeeccceeeEEEeeeceeCceEEEe
Q psy519          268 PVGFEAATLAANSRVRTLREMHEIVGPVVVVE  299 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  299 (351)
                      +.+..-.+.+.+.  +++++|+..+|+.....
T Consensus       281 ~~~~q~~v~S~Dk--~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  281 DTDQQNKVVSMDK--RILKIWDECTGKPMASI  310 (703)
T ss_pred             ccCCCceEEecch--HHhhhcccccCCceeec
Confidence            7655444444444  47899999999865444

>KOG1240|consensus

Probab=99.69  E-value=1.3e-14  Score=133.73  Aligned_cols=209  Identities=17%  Similarity=0.192  Sum_probs=156.8

Q ss_pred             cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCC-------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy519           46 TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQM-------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVR  116 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  116 (351)
                      +..|...+..++.++.. .+ ++|+.||+|++|+...-       +...++.....++.++.+.+.+..+|+++.||.|+
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            66788888888888765 66 99999999999998631       23334444567889999999999999999999999


Q ss_pred             EEeCCCCc-------eeEEecc-CCCCeEE-EEEcc-CCC-EEEEEecCCCCCeEEEEEccCCceeEEec--cCCCCEEE
Q psy519          117 LWSITDGA-------SVRVFSD-HVSPVLS-IAFSP-CGK-YLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLS  183 (351)
Q Consensus       117 i~d~~~~~-------~~~~~~~-~~~~i~~-~~~~~-~~~-~l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~  183 (351)
                      +.++...+       ..+.... ..+.+.+ -+|.. .+. .++.+..   .+.|..||++.......++  ...+.|++
T Consensus      1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~---~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD---LSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe---ccceEEecchhhhhHHhhhcCccccceeE
Confidence            99987621       1111111 1233333 34433 233 5666666   8999999998875544433  34578999


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC---CEEEEE-e-CCCeEEEEeCCCCceee
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG---ETLVTG-S-LTGTVQFYGWPSASKIG  257 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~-~dg~i~i~~~~~~~~~~  257 (351)
                      ++.+|.+.++++|+..|.+.+||++-+.++..+..++..+++.+..+|-.   ...+++ + ..+.|.+|++.+|....
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence            99999999999999999999999999999999887888899999888743   344444 4 47899999999885543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=2.8e-12  Score=110.69  Aligned_cols=263  Identities=14%  Similarity=0.157  Sum_probs=167.8

Q ss_pred             CceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeC----CCcEEEEeCCCC--e--eeEEeeCCCCCeEEE
Q psy519           35 KNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSR----DTTARLWSLEQM--Y--PLRIFVGHKQDVTCA   97 (351)
Q Consensus        35 ~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~----d~~i~vw~~~~~--~--~~~~~~~~~~~i~~i   97 (351)
                      +.|++|+++..        ..........++++|++++ .+...    ++.|..|++...  +  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            56777776332        1112234456788999877 44443    678999988753  3  333333234455679


Q ss_pred             EEeCCCCEEEEEeC-CCcEEEEeCCC-CceeEE---ec----------cCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           98 RFHPKITYIGTGSY-DKAVRLWSITD-GASVRV---FS----------DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        98 ~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      +++|++++|+++.. +|.+.++++.. +.....   +.          .......++.++|+++++++...+  ...|.+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~  170 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYV  170 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEE
Confidence            99999999998875 79999999986 333222   11          123567899999999999988664  568999


Q ss_pred             EEccCCc--ee--EEec-cCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcC--CCc--EEEEeecc-----CCCCEEEE
Q psy519          163 WSITDGA--SV--RVFS-DHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELT--TGR--VISRFHLQ-----EHEPVTSL  227 (351)
Q Consensus       163 ~d~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~-----~~~~v~~~  227 (351)
                      |++....  ..  ..+. ......+.+.|+|+++++++..+ ++.|.++++.  ++.  .+..+...     .......+
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            9997654  21  1221 34456789999999998877654 7789999988  442  22222211     11258899


Q ss_pred             EEcCCCCEEEEEeC-CCeEEEEeCC--CCceeee-------eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          228 VWSVTGETLVTGSL-TGTVQFYGWP--SASKIGI-------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       228 ~~~~~~~~l~~~~~-dg~i~i~~~~--~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                      +++|||++|+++.. .+.|.+|++.  +++....       .....++++|+|++++++..++..-.+.-++..+|....
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            99999999887664 6789999993  3443322       123468999999998887766544333334556666444


Q ss_pred             Ee
Q psy519          298 VE  299 (351)
Q Consensus       298 ~~  299 (351)
                      +.
T Consensus       331 ~~  332 (345)
T PF10282_consen  331 VG  332 (345)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354|consensus

Probab=99.68  E-value=1.9e-15  Score=121.12  Aligned_cols=237  Identities=16%  Similarity=0.258  Sum_probs=168.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCC------------ccceEEEEECCCCcE---EE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGH------------DMTVWSVEACSKGLA---LT   66 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~------------~~~i~~~~~~~~~~~---~~   66 (351)
                      .-|.++.|...  |++||+|..+|.|.++.-...          ++.|            ...|+.+.|.+++..   +.
T Consensus        26 diis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   26 DIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             cceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            56788999999  999999999999998875543          2222            356888999988743   78


Q ss_pred             EeCCCcEEEEeCCCCee-----------------------------------eEEe-eCCCCCeEEEEEeCCCCEEEEEe
Q psy519           67 GSRDTTARLWSLEQMYP-----------------------------------LRIF-VGHKQDVTCARFHPKITYIGTGS  110 (351)
Q Consensus        67 ~~~d~~i~vw~~~~~~~-----------------------------------~~~~-~~~~~~i~~i~~~~~~~~l~~~~  110 (351)
                      ...|.+|++|.+.....                                   .+.+ ..|..-|.++.++.|...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            88999999998753210                                   1111 2577889999999999888876 


Q ss_pred             CCCcEEEEeCCCCce---eEEecc-----CCCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCcee----EE----
Q psy519          111 YDKAVRLWSITDGAS---VRVFSD-----HVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASV----RV----  173 (351)
Q Consensus       111 ~dg~i~i~d~~~~~~---~~~~~~-----~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~----~~----  173 (351)
                      .|=.|-+|+++-...   +-.++.     ...-|++..|+|. .+.++..+.   .|.|++-|+|.....    +.    
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS---KGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS---KGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC---CCcEEEeechhhhhhcchhhhhccc
Confidence            478899999864322   111222     2356888999995 456666666   899999999854211    11    


Q ss_pred             --------eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc-CCCcEEEEeeccCC-----------C---CEEEEEEc
Q psy519          174 --------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL-TTGRVISRFHLQEH-----------E---PVTSLVWS  230 (351)
Q Consensus       174 --------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~-----------~---~v~~~~~~  230 (351)
                              +..--..|..+.|+++|+++++-.. -+|++||+ ...+++..+..+..           .   .-..++|+
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence                    1122346889999999999998754 57999999 45555555542211           1   23567899


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      -++.++++|+..+.+++|+...|..
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             CCcceEecccccceEEEecCCCCcc
Confidence            9999999999999999999665543

>KOG2111|consensus

Probab=99.68  E-value=5.4e-14  Score=111.80  Aligned_cols=233  Identities=13%  Similarity=0.120  Sum_probs=166.7

Q ss_pred             ceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCC--CeEEEEEeCCCCEEEE-EeCC------CcEEEEeCCC
Q psy519           52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ--DVTCARFHPKITYIGT-GSYD------KAVRLWSITD  122 (351)
Q Consensus        52 ~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~-~~~d------g~i~i~d~~~  122 (351)
                      ...+++|+.|..-.+++.|.-.++|+.+--+.....+.+.+  .+..+-|-  .++++. |+.+      ..+.|||=..
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence            45568999888877777788899999876443322222222  22233332  344443 3322      4699999666


Q ss_pred             CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-CCceeEEeccCCCCEEEEEECC--CCcEEEE-EcC
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSP--CGKYLAS-GGE  198 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~-~~~  198 (351)
                      .+++.++. ...+|.++.+.++  .+++.-    .+.|++|... +.+.++.+.....|---++.+|  +..+||. |-.
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC--eEEEEe----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            67777775 6789999999764  455443    7899999987 4566666654433333455555  3344444 345


Q ss_pred             CCeEEEEEcCCCcE--EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeee-------eecceeEEec
Q psy519          199 DGLVLTHELTTGRV--ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT-VQFYGWPSASKIGI-------GVYPRCAAQP  268 (351)
Q Consensus       199 dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~-------~~~~~~~~s~  268 (351)
                      -|+|.|-|+...+.  ...+ ..|.+.|.+++.+.+|.++|++|..|+ |+|||..+|+++.+       ..+..++|||
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             cceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence            69999999986655  2333 478899999999999999999999987 89999999998875       5677899999


Q ss_pred             CCceeeeeeccceeeEEEeeeceeCc
Q psy519          269 VGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ++.++++.+.-|++.++.+-+...+.
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~~~~~~  262 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRDTENTE  262 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeecCCCCc
Confidence            99999999999999988887765444

>KOG2315|consensus

Probab=99.68  E-value=9.2e-14  Score=118.39  Aligned_cols=269  Identities=13%  Similarity=0.147  Sum_probs=176.6

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEE------eC-----CCcEEEEe
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTG------SR-----DTTARLWS   77 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~------~~-----d~~i~vw~   77 (351)
                      .++...++|++  |+++|.+ .+..+.|++....   .......+.++.|+|-|.++..      ..     .-.+.+|+
T Consensus        35 ~~~~v~~~S~~--G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNN--GRLFAYS-DNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCC--CcEEEEE-cCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            33678899999  9988886 5567889888766   2222237889999999876321      12     24577999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC-------------
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-------------  144 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-------------  144 (351)
                      ++++.....++.....-++..|++|..+.+- -..+.+++|++.+.+.... +-|...+..+.++|.             
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCC
Confidence            9997666556544433378888887654433 2356788888765332111 112334444444443             


Q ss_pred             ---------------------------------------CCEEEEEecCCC---------CCeEEEEEccCCceeEEecc
Q psy519          145 ---------------------------------------GKYLASGGTGSY---------DKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       145 ---------------------------------------~~~l~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~  176 (351)
                                                             |.-|++-.....         +..++++++........+ .
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~  268 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-L  268 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-C
Confidence                                                   322111100000         123444444422222222 3


Q ss_pred             CCCCEEEEEECCCCcEEEEE--cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCC
Q psy519          177 HVSPVLSIAFSPCGKYLASG--GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL---TGTVQFYGWP  251 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~  251 (351)
                      ..++|.++.|+|+++-++++  -.--.+.|||++ +..+..+   ..++-+++-|+|.|++++.++-   .|.+.|||+.
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            47899999999999876654  456789999985 5666554   3467789999999999988765   4899999999


Q ss_pred             CCceeeee---ecceeEEecCCceeeeeeccceeeE---EEeeec
Q psy519          252 SASKIGIG---VYPRCAAQPVGFEAATLAANSRVRT---LREMHE  290 (351)
Q Consensus       252 ~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~  290 (351)
                      +.+++...   ...-+.|+|||.++.+++...+.++   +++|+.
T Consensus       345 n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  345 NRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             chhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            98877653   3345899999999999999877664   889984

>KOG2314|consensus

Probab=99.66  E-value=2.3e-13  Score=115.84  Aligned_cols=297  Identities=15%  Similarity=0.103  Sum_probs=207.8

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeC-----------CCcEEEEeC
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSR-----------DTTARLWSL   78 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~-----------d~~i~vw~~   78 (351)
                      +-+.|||.  |.||++-...| |.+|--...    ...|.+ |.-+.|||..++ +|-+.           ...++|||+
T Consensus       214 tyv~wSP~--GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  214 TYVRWSPK--GTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeEEecCC--ceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            56899999  99999987766 779976655    445554 778999999988 65432           367999999


Q ss_pred             CCCeeeEEeeCCCC--Ce-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           79 EQMYPLRIFVGHKQ--DV-TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        79 ~~~~~~~~~~~~~~--~i-~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      .+|...+.+.....  .+ .-+.||.|++++|.-.. .+|.+|+..+..++..-.-....|....|+|.++.||.=....
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            99998888765322  22 34689999999987765 5699999877555443333457889999999999988654311


Q ss_pred             --CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc----------CCCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          156 --YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG----------EDGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       156 --~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                        .-..+.+..+-+++.++.-.-+.-.-..+-|-.+|.+|+.--          .-..+.|+.++.....-. ...-...
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve-~velke~  447 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-VVELKES  447 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-eeecchh
Confidence              124577888888887777665554445677888888887532          122355666655443221 1234568


Q ss_pred             EEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-Ccee------eeeecceeEEecCCceeeeeeccceeeEEEeeecee-
Q psy519          224 VTSLVWSVTGETLVTGSL---TGTVQFYGWPS-ASKI------GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV-  292 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~-~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (351)
                      |...+|-|.|+.+++-+.   ..++.+|.+++ ....      .....+.+.|+|.|+++++++-.+.-+.+.+.|+.- 
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a  527 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA  527 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence            999999999998876544   36799999883 2222      225667899999999999888887777788877653 


Q ss_pred             -----CceEEEeeEEEEecCCceeeccEEE
Q psy519          293 -----GPVVVVESFIVEIRPDKWYEANLIV  317 (351)
Q Consensus       293 -----g~~~~~~~~~~~~~~~~~~~~~~~~  317 (351)
                           +..-......+.+.|.|+|...+..
T Consensus       528 ~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  528 DLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             hhhhccCccccccccceECCCCCEEEEeee
Confidence                 2211222233689999999877644

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.4e-13  Score=120.42  Aligned_cols=212  Identities=13%  Similarity=0.022  Sum_probs=140.7

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCC---CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRD---TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG  107 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  107 (351)
                      .|.++|.+..    ...+...+....|+|+|+. +..+.+   ..|.+|++.+++... +...........|+|||+.|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            3666666544    4456678899999999976 444432   469999998876543 333334455789999999887


Q ss_pred             E-EeCCC--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          108 T-GSYDK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       108 ~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      . ...+|  .|+++|+.+++.. .+..+........|+|||+.++..+.......|+++|+.+++..... .........
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~  336 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARP  336 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccce
Confidence            4 44444  6888899887654 34445555667899999998887654222346888888777643322 222233457


Q ss_pred             EECCCCcEEEEEcCC-C--eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCC
Q psy519          185 AFSPCGKYLASGGED-G--LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSA  253 (351)
Q Consensus       185 ~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~  253 (351)
                      .|+|||+.++..+.+ +  .|.++|+.+++.. .+..  ........|+|+|+.++..+.+   ..+.++++...
T Consensus       337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            899999998876643 3  5888999887643 2321  1222356899999998877654   35777777544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=3.3e-13  Score=120.25  Aligned_cols=210  Identities=13%  Similarity=0.077  Sum_probs=143.7

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCC---CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRD---TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG  107 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  107 (351)
                      .|.++|....    +..+...+....|+|+|+. +.+..+   ..|++||+.+++... +..+...+.+++|+||++.|+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE
Confidence            5777777543    4455667889999999987 444432   579999999876543 334555667789999998776


Q ss_pred             E-EeCCC--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          108 T-GSYDK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       108 ~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      . .+.++  .|++||+.+++.. .+..+........|+|+|+.|+..+.......|+++|+.+++. ..+..+......+
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence            4 34444  5899998876543 3333444555789999999888765422233688889877654 3344445566788


Q ss_pred             EECCCCcEEEEEcCCC---eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q psy519          185 AFSPCGKYLASGGEDG---LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG---TVQFYGWP  251 (351)
Q Consensus       185 ~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~  251 (351)
                      .|+|+|++++.++.++   .|.+||+.++... .+.  .........|+|+++.|+..+.++   .+.+.+..
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            9999999999887765   7899999876543 222  122345668999999888877653   45555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=4e-13  Score=119.94  Aligned_cols=214  Identities=13%  Similarity=0.075  Sum_probs=145.2

Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      .|.++|.+.+.. +.+..+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+|||+.|
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            477888775544 4455667788999999999998776543   369999998876543 33334455678999999988


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-C--CeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-D--GLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +.......+..|++||+.+++.. .+..+........|+|||+.++..+. +  ..|+++|+.+++... +... .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~  334 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNA  334 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCcc
Confidence            75543222346899999877643 45455555667899999998776553 3  357788887776433 3222 22344


Q ss_pred             EEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeee---ecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          226 SLVWSVTGETLVTGSLT-G--TVQFYGWPSASKIGIG---VYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ...|+|+|+.|+..+.+ +  .|.++|+.+++.....   ......|+|+|+.++.....+....+.+.+.
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            67899999999877653 3  5888999887654331   2235689999999888776654444555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=5.2e-13  Score=118.94  Aligned_cols=212  Identities=14%  Similarity=0.082  Sum_probs=135.6

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE-EEEe-CC--CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGS-RD--TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG  107 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~-~d--~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  107 (351)
                      .+.++|....    +..+...+....|+|||+. +..+ .+  ..|++||+.+++... +..........+|+|||+.|+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEE
Confidence            4556665443    3345667889999999976 4333 23  358899998876533 222233345789999999876


Q ss_pred             E-EeCCCc--EEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          108 T-GSYDKA--VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       108 ~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      . .+.+|.  |+++|+.+++.. .+..+.......+|+|||+.++..+.......|+++|+.+++.... ..........
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~  355 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGG  355 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCe
Confidence            5 455664  888898877643 4444555567789999999988765422234677788877764332 2222223457


Q ss_pred             EECCCCcEEEEEcC-CC--eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCC
Q psy519          185 AFSPCGKYLASGGE-DG--LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-G--TVQFYGWPSA  253 (351)
Q Consensus       185 ~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~  253 (351)
                      +|+|||++++..+. ++  .|.++|+.+++... +. .. .......|+|+|+.|+..+.+ |  .+++++....
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            89999998877654 33  46667887776432 22 11 122345899999988776553 3  3777776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=8.4e-13  Score=117.64  Aligned_cols=212  Identities=14%  Similarity=0.128  Sum_probs=140.8

Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      .+.++|...... +.+..+...+....|+|||+.|+..+.+   ..|+++|+.+++.... ..........+|+|||+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence            577778765443 3455567788899999999988876543   3588999988765332 2223344578999999988


Q ss_pred             EEEecCCCCC--eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-C--CeEEEEEcCCCcEEEEeeccCCCC
Q psy519          149 ASGGTGSYDK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-D--GLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       149 ~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      +.....  ++  .|+++|+.+++. ..+..+.......+|+|||+.++..+. +  ..|+++|+.+++... +... ...
T Consensus       277 a~~~~~--~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~  351 (448)
T PRK04792        277 ALVLSK--DGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQ  351 (448)
T ss_pred             EEEEeC--CCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCC
Confidence            765332  44  588889887754 444445555677899999998876553 3  357777887776433 3222 222


Q ss_pred             EEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeee---ecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          224 VTSLVWSVTGETLVTGSLT-G--TVQFYGWPSASKIGIG---VYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ....+|+|||++|+..+.+ +  .|.++|+.+++.....   ......|+|+|..+++....+....+.+++.
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            3457999999998776553 3  4666788777654321   1234589999999888776665555555553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=9.2e-13  Score=116.48  Aligned_cols=222  Identities=14%  Similarity=0.095  Sum_probs=141.7

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE--E-EEEeCC--CcEEEEeCCCCceeEEeccCCCCeEEEEEccCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY--I-GTGSYD--KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l-~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                      ..|.+.|...+... .+.........-+|+|||+.  + ++...+  ..|++.++.+++..+.. ...+.....+|+|||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence            46777887665543 34445556678899999975  2 244444  35888898877644333 244555678999999


Q ss_pred             CEEEEEecC--CCCCeEEEEEccCC---ceeEEeccCCCCEEEEEECCCCcEEEEEc-CCCe--EEEEEcCC-CcEEEEe
Q psy519          146 KYLASGGTG--SYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGG-EDGL--VLTHELTT-GRVISRF  216 (351)
Q Consensus       146 ~~l~~~~~~--~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~  216 (351)
                      +.|+.....  ..+-.+..|++..+   +...............+|+|||+.|+..+ .+|.  |+++++.. +.....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            998876531  11233455777653   32233322223346789999999877655 4564  44445432 2223333


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeee----ecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          217 HLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSASKIGIG----VYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       217 ~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      . .....+....|+|||+.|+..+.+   ..|.+||+.+++.....    ......|+|+|+.++..........+.+++
T Consensus       323 t-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        323 T-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             c-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            2 233456788999999998876543   47999999988765442    345689999999988776665556677777


Q ss_pred             ceeCce
Q psy519          290 EIVGPV  295 (351)
Q Consensus       290 ~~~g~~  295 (351)
                      ...++.
T Consensus       402 l~~g~~  407 (428)
T PRK01029        402 LITKKT  407 (428)
T ss_pred             CCCCCE
Confidence            666653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=1.2e-11  Score=106.81  Aligned_cols=238  Identities=15%  Similarity=0.177  Sum_probs=158.4

Q ss_pred             EEeeecCCccccEEEEecC----CCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEE-eCCCcEEEEeCC
Q psy519           15 IQNSFKPETVEDVLANLES----QKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTG-SRDTTARLWSLE   79 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~----~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~-~~d~~i~vw~~~   79 (351)
                      .-++++|+  +++|.+...    ++.|..|.+...         ..........++++|++++ +++ ..+|.+.++++.
T Consensus        40 s~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   40 SWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            45788999  888887755    568888887753         1112344557899999987 444 468999999998


Q ss_pred             C-CeeeEE---ee----------CCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCc--ee--EEe-ccCCCCeEEE
Q psy519           80 Q-MYPLRI---FV----------GHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGA--SV--RVF-SDHVSPVLSI  139 (351)
Q Consensus        80 ~-~~~~~~---~~----------~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~-~~~~~~i~~~  139 (351)
                      . +.....   +.          .......++.++|+++++++... ...|.+|++....  ..  ..+ .......+.+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            6 433222   21          12345788999999998887654 3579999987654  21  112 2345667899


Q ss_pred             EEccCCCEEEEEecCCCCCeEEEEEcc--CCc--eeEEecc------CCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcC
Q psy519          140 AFSPCGKYLASGGTGSYDKAVRLWSIT--DGA--SVRVFSD------HVSPVLSIAFSPCGKYLASGGE-DGLVLTHELT  208 (351)
Q Consensus       140 ~~~~~~~~l~~~~~~~~d~~i~i~d~~--~~~--~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  208 (351)
                      +|+|+++++++..+.  ++.|.++++.  ++.  .+.....      .......++++|||++|+++.. .+.|.+|++.
T Consensus       198 ~f~pdg~~~Yv~~e~--s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  198 AFSPDGKYAYVVNEL--SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEcCCcCEEEEecCC--CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999887653  8889999998  332  2222221      1125788999999999888764 6789999993


Q ss_pred             --CCcE--EEEeeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC--CCCceee
Q psy519          209 --TGRV--ISRFHLQEHEPVTSLVWSVTGETLVTGSL-TGTVQFYGW--PSASKIG  257 (351)
Q Consensus       209 --~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~--~~~~~~~  257 (351)
                        +++.  +..+.. .....+.+.++|+|++|+++.. ++.|.+|++  .+|.+..
T Consensus       276 ~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  276 PATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             TTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             cCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence              3333  233321 2345899999999999988775 679999976  4555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.59  E-value=1.6e-12  Score=109.78  Aligned_cols=294  Identities=13%  Similarity=0.122  Sum_probs=198.7

Q ss_pred             ccceEEeeecCCccccEEEEecCCC---------------ceEEEecCCc-----cCCCccc--eE-EEEECCCCcEEEE
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQK---------------NLQSRYLPYY-----TSGHDMT--VW-SVEACSKGLALTG   67 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~---------------~i~i~~~~~~-----~~~~~~~--i~-~~~~~~~~~~~~~   67 (351)
                      ...|.-+.|||.  +++|.+-+..+               .+.+||...+     +.+...+  .+ -+.|+-+.+++.-
T Consensus        71 ~~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          71 HPDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             cCCceecccCcc--cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence            357888999999  99999865433               4889999887     3333333  44 6788888877333


Q ss_pred             eCCCcEEEEeCCCCeeeEEeeC-CCCCeEEEEEeCCC--CEEEE-----EeCCCcEEEEeCCCCceeEEeccCCCCeEEE
Q psy519           68 SRDTTARLWSLEQMYPLRIFVG-HKQDVTCARFHPKI--TYIGT-----GSYDKAVRLWSITDGASVRVFSDHVSPVLSI  139 (351)
Q Consensus        68 ~~d~~i~vw~~~~~~~~~~~~~-~~~~i~~i~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  139 (351)
                      -....++|+++...-....+.. ....+....|+|.+  ..|+.     .+..+.+++|.+..+..+.+..-....-..+
T Consensus       149 vv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL  228 (561)
T COG5354         149 VVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL  228 (561)
T ss_pred             hccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence            3556799999732211111111 13568888899853  33432     3557899999998776665543333334568


Q ss_pred             EEccCCCEEEEEecCC--------CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc--CCCeEEEEEcCC
Q psy519          140 AFSPCGKYLASGGTGS--------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG--EDGLVLTHELTT  209 (351)
Q Consensus       140 ~~~~~~~~l~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~  209 (351)
                      .|++.|+++++-....        ....++|++++........ ...++|...+|.|.++.+++.+  .+-.+.++|++.
T Consensus       229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence            9999999877543210        0357899998755443333 5678999999999888776554  678899999976


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceee-e---eecceeEEecCCceeeeeeccce-
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSASKIG-I---GVYPRCAAQPVGFEAATLAANSR-  281 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~-~---~~~~~~~~s~~~~~~~~~~~~~~-  281 (351)
                      . ....+   ....-..+.|+|.+++++.++-|   |.+.+||........ .   .....+.|+|+++++.+...... 
T Consensus       308 N-l~~~~---Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~  383 (561)
T COG5354         308 N-LRFYF---PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL  383 (561)
T ss_pred             c-eEEec---CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc
Confidence            5 44333   23445778999999999887665   789999988765554 2   23345789999999887777665 


Q ss_pred             --eeEEEeeeceeCceEEEeeEEEEecCCceeec
Q psy519          282 --VRTLREMHEIVGPVVVVESFIVEIRPDKWYEA  313 (351)
Q Consensus       282 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  313 (351)
                        +..+++|+........+..  +.+.|.++|..
T Consensus       384 ~~Dn~i~l~~v~g~~~fel~~--~~W~p~~~~~t  415 (561)
T COG5354         384 RVDNSIKLWDVYGAKVFELTN--ITWDPSGQYVT  415 (561)
T ss_pred             ccCcceEEEEecCchhhhhhh--ccccCCcccce
Confidence              4568899976665443433  56677666653

>KOG0974|consensus

Probab=99.59  E-value=1.9e-13  Score=124.37  Aligned_cols=221  Identities=14%  Similarity=0.177  Sum_probs=167.1

Q ss_pred             EEEEecCCCceEEEecCCc-cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCC----eEEEEEe
Q psy519           27 VLANLESQKNLQSRYLPYY-TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQD----VTCARFH  100 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~----i~~i~~~  100 (351)
                      +++++...+.+..-+.... ...-.+.|....+.-+.+. +.+..++.+.+||...+............    ..-+-++
T Consensus        63 ~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s  142 (967)
T KOG0974|consen   63 KIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDS  142 (967)
T ss_pred             eEEEEEeecceeecchhhhhhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEecc
Confidence            4555555444444333332 2223344444444444444 88899999999999887766655432221    1123346


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeE-EeccCCC
Q psy519          101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVR-VFSDHVS  179 (351)
Q Consensus       101 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~  179 (351)
                      ++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||.++++.+.   |..+++|++.+.+... ..-+|..
T Consensus       143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec---CcceeeeecccccccCcccccccc
Confidence            67778999999999999999854444467899999999999999999999999   9999999999987666 5568999


Q ss_pred             CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .+.+++|.|+  .++++++|.+.++|+. ++..+..+..+....+..++..++...+++++.||.+++|++...
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999988  8999999999999976 455565665444578999999999999999999999999998753

>KOG1334|consensus

Probab=99.58  E-value=2.4e-14  Score=119.86  Aligned_cols=246  Identities=17%  Similarity=0.246  Sum_probs=188.9

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcE--EEEeCCCcEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA--LTGSRDTTAR   74 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~   74 (351)
                      ....||...|....|-|......+++.+.||.+++=.+...        +..|.++|..++.-|+...  .+++.|+.+.
T Consensus       179 ~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~  258 (559)
T KOG1334|consen  179 SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF  258 (559)
T ss_pred             ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccccccee
Confidence            45678999999999999755678999999999998776554        6779999999999998744  9999999999


Q ss_pred             EEeCCCCeeeEEe---eCCCC---CeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce------eEEe------ccCCCC
Q psy519           75 LWSLEQMYPLRIF---VGHKQ---DVTCARFHPKI-TYIGTGSYDKAVRLWSITDGAS------VRVF------SDHVSP  135 (351)
Q Consensus        75 vw~~~~~~~~~~~---~~~~~---~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~  135 (351)
                      -+|+....+...+   ..+..   ....++..|.. ..+++++.|-.+++||.+.-..      +..+      ....-.
T Consensus       259 ~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~  338 (559)
T KOG1334|consen  259 HIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVN  338 (559)
T ss_pred             eeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccc
Confidence            9999876544333   22333   56788888854 4899999999999999874321      1222      123457


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccC--C----------ceeEE-eccCCC--CEEEEEE-CCCCcEEEEEcCC
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITD--G----------ASVRV-FSDHVS--PVLSIAF-SPCGKYLASGGED  199 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~--~----------~~~~~-~~~~~~--~i~~~~~-~~~~~~l~~~~~d  199 (351)
                      |++++|+.++.-++++..   |-.|+++.-..  |          ..+.. +++|..  .|..+-| -|...++++|+.-
T Consensus       339 ITgl~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  339 ITGLVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             ceeEEecCCccceeeeec---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence            999999988887777777   89999995322  2          12222 666653  3555644 5788999999999


Q ss_pred             CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          200 GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       200 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |.|.||+-.+++.+..++. ...-|+||.-+|.-..||+.+-|..|+||.-.+.+
T Consensus       416 GhIFiW~K~t~eii~~Meg-Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  416 GHIFIWDKKTGEIIRFMEG-DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ceEEEEecchhHHHHHhhc-ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            9999999999998887664 33489999999999999999999999999875443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.57  E-value=3.1e-12  Score=108.10  Aligned_cols=312  Identities=13%  Similarity=0.094  Sum_probs=212.6

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeC---------------C
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSR---------------D   70 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~---------------d   70 (351)
                      -..++..+.|||.  |.+|++.... .|.+|.-...   ..-....|..+.|+|++++ .+-+.               +
T Consensus        31 ~~~p~~~~~~SP~--G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPL--GTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCc--chheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            4568889999999  9999987665 4888887665   2223356888999999988 54433               2


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCC--eE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-EEecc-CCCCeEEEEEccCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQD--VT-CARFHPKITYIGTGSYDKAVRLWSITDGASV-RVFSD-HVSPVLSIAFSPCG  145 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~  145 (351)
                      +.+.|||+.++..+..+.....+  .+ -+.|+-+.++++-. ....++++++ +.... ..+.. ....+....|+|.+
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            35999999999999888766655  45 67888888877655 3567999997 33211 11111 23678889999964


Q ss_pred             C--EEEEEe--cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc-----------CCCeEEEEEcCCC
Q psy519          146 K--YLASGG--TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG-----------EDGLVLTHELTTG  210 (351)
Q Consensus       146 ~--~l~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~  210 (351)
                      +  .|+.-.  .....+.+++|.+..+..+.+..-....-..+.|.+.|+++++-.           ....+++++++..
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence            3  344322  122378899999987776665443333445789999998776432           1346788888633


Q ss_pred             cEEEEeeccCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCcee--eeeecceeEEecCCceeeeeeccceeeEEE
Q psy519          211 RVISRFHLQEHEPVTSLVWSVTGETLVTG--SLTGTVQFYGWPSASKI--GIGVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      .+.-.  ....++|...+|.|.++.+++.  -.+-.+.++|++..-..  ....-+.+.|||.++++.+++-+..-+.+.
T Consensus       266 ~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~  343 (561)
T COG5354         266 SIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE  343 (561)
T ss_pred             cccee--ccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceE
Confidence            32221  2346899999999998877654  46889999999876222  124556789999999999999999888899


Q ss_pred             eeeceeCceEE-----EeeEEEEecCCceeeccE-----EEecCCcccccee
Q psy519          287 EMHEIVGPVVV-----VESFIVEIRPDKWYEANL-----IVLDDDLKECNLE  328 (351)
Q Consensus       287 ~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~  328 (351)
                      +|+...--.+.     ..+....|+||+.+....     ...|+.+++|++.
T Consensus       344 i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         344 IFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             EeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            98865432111     112234788998765322     2356778888764

>KOG4547|consensus

Probab=99.56  E-value=2.3e-12  Score=110.70  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=149.1

Q ss_pred             ccEEEEecCCCceEEEecCCc--------cCCCccceEEEEEC------C--------------CCcE-EEEeCCCcEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEAC------S--------------KGLA-LTGSRDTTARL   75 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~------~--------------~~~~-~~~~~d~~i~v   75 (351)
                      +.++|....||.+++|+...+        ...-++...+..|.      |              +... +-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            789999999999999999887        11223444444442      2              1122 67788899999


Q ss_pred             EeCCCCeeeEEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           76 WSLEQMYPLRIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      |++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+..+....+.....+..+.+++.+|||..+++++ 
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9999999887775  6889999999999989999999999999999999999999998889999999999999999984 


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCC-----CcEEEEEc-CCCeEEEEEcCC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-----GKYLASGG-EDGLVLTHELTT  209 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~  209 (351)
                          +.|++||+.+++.+..|++|.++|+++.|.-+     |.+++++. .+..+.+|-+..
T Consensus       164 ----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 ----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                69999999999999999999999999999876     66666543 455577776543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.3e-10  Score=94.79  Aligned_cols=259  Identities=14%  Similarity=0.143  Sum_probs=177.6

Q ss_pred             CCceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEe---CCCcEEEEeCCC--Ceee--EEeeCCCCCeEEE
Q psy519           34 QKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGS---RDTTARLWSLEQ--MYPL--RIFVGHKQDVTCA   97 (351)
Q Consensus        34 ~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~---~d~~i~vw~~~~--~~~~--~~~~~~~~~i~~i   97 (351)
                      +.-|++|++.+.        ...+.+.++-++|+|+++. .++-   .+|.|..|.++.  |+..  ........+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999999854        4456778889999999965 4433   367788887764  4432  2222223344789


Q ss_pred             EEeCCCCEEEEEeC-CCcEEEEeCCC-Ccee---EEeccCCCC----------eEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           98 RFHPKITYIGTGSY-DKAVRLWSITD-GASV---RVFSDHVSP----------VLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        98 ~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~---~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ++++++++++++.. .|.|.++-++. |...   ... .|.+.          +....+.|+++++++..-+  ...|.+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~~  171 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRIFL  171 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceEEE
Confidence            99999999998876 48899999865 3321   222 23333          7889999999999998764  568999


Q ss_pred             EEccCCceeEEec---cCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCC-cEEEEee--------ccCCCCEEEEEE
Q psy519          163 WSITDGASVRVFS---DHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTG-RVISRFH--------LQEHEPVTSLVW  229 (351)
Q Consensus       163 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~--------~~~~~~v~~~~~  229 (351)
                      |++..++....-.   ......+.|.|+|++++.++.++ +++|.+|..... ..+..+.        +........+..
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            9999775432211   23445689999999999888776 889999998763 2222221        122356788999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEeCCCC-ceeee-------ee-cceeEEecCCceeeeeeccceeeEEEeeeceeCce
Q psy519          230 SVTGETLVTGSL-TGTVQFYGWPSA-SKIGI-------GV-YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPV  295 (351)
Q Consensus       230 ~~~~~~l~~~~~-dg~i~i~~~~~~-~~~~~-------~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~  295 (351)
                      ++||++|.++.. ...|.+|.+... .++..       .. .....++|.|.+|+++..++.--.+..-+..+|..
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence            999999988755 357888887643 22322       22 34578999999988888777654444455566663

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=4.9e-11  Score=104.92  Aligned_cols=212  Identities=12%  Similarity=0.024  Sum_probs=139.5

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE-EEEEeCC---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY-IGTGSYD---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (351)
                      ..|.+-|....... .+.... ......|+|||+. ++..+.+   ..|+++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            45666666544333 232233 6778999999984 6654433   569999998887655443 455666788999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eEEEEEcCCCcEEEEeeccCCCC
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      .++.......+..|.++|+.+++. ..+..+........|+|||+.|+..+. .+  .|++.|+.+++..+... ...  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--
Confidence            887654433356799999877763 444444433445689999987776653 23  68888988776543321 211  


Q ss_pred             EEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeee---eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          224 VTSLVWSVTGETLVTGSLT---------GTVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                       ....|+|||+.|+..+..         ..|.+.|+.++.....   .......|+|||+.++.....+....+...+.
T Consensus       322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence             124899999988776653         3688889888765433   22335889999999888876655444544443

>KOG0280|consensus

Probab=99.52  E-value=3.2e-12  Score=100.78  Aligned_cols=236  Identities=17%  Similarity=0.161  Sum_probs=156.3

Q ss_pred             CccceEEeeecCC-cccc-EEEEecCCCceEEEecCCc--------cCCCc---cceEEEEECCCCcE-EEEeCCCcEEE
Q psy519           10 DHKHFIQNSFKPE-TVED-VLANLESQKNLQSRYLPYY--------TSGHD---MTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus        10 ~~~~v~~~~~sp~-~~~~-~l~~~~~~~~i~i~~~~~~--------~~~~~---~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      .++.++.+.|+-- ..|. .|+-+...|.|.++.....        +....   ....++.|++.+.- +++..+|.+.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            3445566666631 1144 5666778899999987765        11111   12456788888766 78888899886


Q ss_pred             EeCCCCee--eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCC-CceeEE-eccCCCCeEEEEEcc-CCCEEE
Q psy519           76 WSLEQMYP--LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITD-GASVRV-FSDHVSPVLSIAFSP-CGKYLA  149 (351)
Q Consensus        76 w~~~~~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~~~-~~~~l~  149 (351)
                      -+......  ++..+.|..+++..+|+. +.+.+++|+.|+.+..||++. ++.+.. .+.|...|.++.-+| .+.+++
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence            66554433  347789999999999976 457899999999999999993 333333 456888999998887 577999


Q ss_pred             EEecCCCCCeEEEEEccC-CceeEEeccCCCCEEEEEECCC--CcEEEEEcCCCeEEEEEcCCCcEE----EEeeccCCC
Q psy519          150 SGGTGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHELTTGRVI----SRFHLQEHE  222 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~  222 (351)
                      +|+.   |..|++||.|+ ++++..- .-.+.|..+.++|.  +..++++-.+| .+|-+...+...    ......|.+
T Consensus       228 TGsY---De~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdS  302 (339)
T KOG0280|consen  228 TGSY---DECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDS  302 (339)
T ss_pred             Eecc---ccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccc
Confidence            9998   99999999995 4555443 34578999999993  34455555555 677776654322    122223334


Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCeEE-EEeC
Q psy519          223 PVTSLVWSVTGETLVTGSL-TGTVQ-FYGW  250 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~-dg~i~-i~~~  250 (351)
                      -+..-.|.....+|++++- |+.++ +|-.
T Consensus       303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             eeeccccccccceeeeeeccccceeeeeee
Confidence            4444555444456777553 55533 5543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.51  E-value=5.7e-11  Score=113.42  Aligned_cols=272  Identities=13%  Similarity=0.129  Sum_probs=186.6

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEE----ecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC-
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSR----YLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE-   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~----~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~-   79 (351)
                      ....|.++.|-++  ...++.+..+|.|.+.    +....    ...-...|.+++||||+.+ +....++++.+.... 
T Consensus        74 ~~~~ivs~~yl~d--~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLAD--SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCcEEEEEeccC--CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            4578999999999  8889999999999999    44443    2334678999999999988 777777887776421 


Q ss_pred             --------------C--------CeeeEEeeC------------------------CCCCeEEEEEeCCCCEEEEEeC--
Q psy519           80 --------------Q--------MYPLRIFVG------------------------HKQDVTCARFHPKITYIGTGSY--  111 (351)
Q Consensus        80 --------------~--------~~~~~~~~~------------------------~~~~i~~i~~~~~~~~l~~~~~--  111 (351)
                                    .        |+....|+|                        ....-..++|-.||.++|+.+.  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                          0        110011100                        2223456889999999998875  


Q ss_pred             -C---CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec----cCCCCEEE
Q psy519          112 -D---KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS----DHVSPVLS  183 (351)
Q Consensus       112 -d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~  183 (351)
                       .   ..+++|+-+ |.....-..-.+--.+++|.|.|+++|+.-.......|.+|. |+|.....|.    .....+..
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence             2   579999954 665544443334445789999999999886533356788888 5665555543    34567999


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEE--EEeeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC----C----
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVI--SRFHLQEHEPVTSLVWSVT-GETLVTGSLTGTVQFYGWP----S----  252 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~----~----  252 (351)
                      +.|++|+..||....|. |.+|-..+-.-.  +.+.......+..+.|+|. ...|...+.+|.+..+++.    .    
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            99999999999987665 999998775432  2233333445666999995 4457777766777665542    1    


Q ss_pred             ------------Cceeee--------------------eecceeEEecCCceeeeeeccceeeEEE
Q psy519          253 ------------ASKIGI--------------------GVYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       253 ------------~~~~~~--------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                                  |..+..                    ..+..++|++++..+++...++.+..+.
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                        111110                    3456789999998889999998776666

>KOG2041|consensus

Probab=99.51  E-value=4.2e-12  Score=111.60  Aligned_cols=261  Identities=15%  Similarity=0.098  Sum_probs=184.7

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------cCCCccceEEEEECCCCcE-
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------TSGHDMTVWSVEACSKGLA-   64 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------~~~~~~~i~~~~~~~~~~~-   64 (351)
                      +..+......+++|+.+  ..++|.|+.||.+++..+.+.                    +.+|...|..+.|+.+.+. 
T Consensus         9 i~iPnnvkL~c~~WNke--~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL   86 (1189)
T KOG2041|consen    9 IGIPNNVKLHCAEWNKE--SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL   86 (1189)
T ss_pred             cCCCCCceEEEEEEccc--CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence            44556678899999999  999999999999999988765                    7899999999999987766 


Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIF--VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  142 (351)
                      -+...+|.|.||-+-.+.-....  ...++.|.+++|+.||..++....||.|.+=.++..+ +.-..-.......+.|+
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws  165 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWS  165 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeec
Confidence            67778999999998776543322  2245678999999999999999999999888776443 22111122334578999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCC-------ceeE----EeccCCCCEEEEEEC--------CCCcEEEEEcCCCeEE
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDG-------ASVR----VFSDHVSPVLSIAFS--------PCGKYLASGGEDGLVL  203 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~-------~~~~----~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~  203 (351)
                      +|.+.++.+-.   +|.+.+||.+..       .+..    .+......+..+.|.        ||...|+++-.+|.+.
T Consensus       166 ~D~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  166 EDLEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             ccHHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence            99998888777   999999996532       1111    112222335556663        4778999999999988


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeee-----eecceeEEecC
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---------GTVQFYGWPSASKIGI-----GVYPRCAAQPV  269 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~-----~~~~~~~~s~~  269 (351)
                      +..-.+......+.  ..-.+....|+++|..|++++.+         +.|.+|. +-|+.++.     ..++.+.|...
T Consensus       243 iMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             hhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence            86544444443332  33578899999999999998764         2566664 33443333     34455666655


Q ss_pred             Cceeee
Q psy519          270 GFEAAT  275 (351)
Q Consensus       270 ~~~~~~  275 (351)
                      |-.++.
T Consensus       320 gLriA~  325 (1189)
T KOG2041|consen  320 GLRIAI  325 (1189)
T ss_pred             ceEEEE
Confidence            555443

>KOG2314|consensus

Probab=99.50  E-value=1.6e-11  Score=104.82  Aligned_cols=267  Identities=13%  Similarity=0.136  Sum_probs=182.1

Q ss_pred             CccceEEeeecCCccccEEEEecC-----------CCceEEEecCCc-----cCC--CccceE-EEEECCCCcEEEEeCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLES-----------QKNLQSRYLPYY-----TSG--HDMTVW-SVEACSKGLALTGSRD   70 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~-----------~~~i~i~~~~~~-----~~~--~~~~i~-~~~~~~~~~~~~~~~d   70 (351)
                      ....|.-+.|||.  .+||++-+.           ...++|||+.++     +..  ....++ -..||.|+++++.-..
T Consensus       248 ~Hp~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~  325 (698)
T KOG2314|consen  248 YHPGVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG  325 (698)
T ss_pred             cCCCceeeecCCc--cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc
Confidence            3456888999999  999998653           247899999988     111  122222 3589999999666666


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY-----DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                      ..|.||+..+...+..-.-.-..|....|+|.++.||.=..     -..+.+-.+.+++.+++..-+.-.-..+.|-.+|
T Consensus       326 ~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g  405 (698)
T KOG2314|consen  326 NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG  405 (698)
T ss_pred             ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC
Confidence            89999998775444322233467889999999888875332     2467788888877777665554444557788888


Q ss_pred             CEEEEEecCC-------CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC---CCeEEEEEcCC-Cc---
Q psy519          146 KYLASGGTGS-------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE---DGLVLTHELTT-GR---  211 (351)
Q Consensus       146 ~~l~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~~---  211 (351)
                      .+|+.-....       .-..+.|+.++........-.....|...+|-|.|+.+++-+.   ..++.+|.+.+ ..   
T Consensus       406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~  485 (698)
T KOG2314|consen  406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS  485 (698)
T ss_pred             cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence            8888643200       0234667777665543333345667899999999987776543   35688888763 22   


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCC--ceee---eeecceeEEecCCceeeeeeccce
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGS---LTGTVQFYGWPSA--SKIG---IGVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~~~~~~--~~~~---~~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      .+..+.   ....+.+.|+|.|++++.+.   ..|.+.++|+...  +...   ....+.+.|-|.|+++.+.++..+
T Consensus       486 lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  486 LVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             hhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence            222222   24578999999999987754   4689999999843  2222   245567899999999988877654

>KOG1354|consensus

Probab=99.49  E-value=2.6e-12  Score=103.42  Aligned_cols=259  Identities=16%  Similarity=0.214  Sum_probs=172.0

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------------------------------cCCCc
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------------------------------TSGHD   50 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------------------------------~~~~~   50 (351)
                      ..|..+.|.++.....+...+.|.+|++|.+...                                         ...|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            5788899998843456777789999999987654                                         45688


Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCee---eEEeeCC-----CCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCC
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYP---LRIFVGH-----KQDVTCARFHPK-ITYIGTGSYDKAVRLWSIT  121 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~---~~~~~~~-----~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~  121 (351)
                      ..|+++.++.|+.......|-.|.+|+++--..   +.-++.+     ..-|++..|+|. .+.++..+..|+|++-|++
T Consensus       165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR  244 (433)
T ss_pred             eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence            889999999999887778889999999873221   2222333     346888999994 5677888889999999998


Q ss_pred             CCcee----EE------------eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-CCceeEEeccCCC-----
Q psy519          122 DGASV----RV------------FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-DGASVRVFSDHVS-----  179 (351)
Q Consensus       122 ~~~~~----~~------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~-----  179 (351)
                      .....    +.            +.+--..|..+.|+++|+++++-.    --+|++||+. ..+++..++-|..     
T Consensus       245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----yltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----YLTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----cceeEEEeccccCCcceEEeehHhHHHHH
Confidence            54321    11            112235688999999999999864    3789999994 4566666654431     


Q ss_pred             ----------CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEE-EeeccCCC-CEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          180 ----------PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVIS-RFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       180 ----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                                .-..++|+.++.++++|+....+++|++..|.... ++...... .+..+   ..-+.+.+++......+
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~  397 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEI  397 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcccccc
Confidence                      12468899999999999999999999976654332 11111111 11111   11223333443333111


Q ss_pred             EeCCCCceeeeeecceeEEecCCceeeeeeccc
Q psy519          248 YGWPSASKIGIGVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      +   ....-....+.+.+|+|....+|+++++.
T Consensus       398 ~---vd~ldf~kkilh~aWhp~en~ia~aatnn  427 (433)
T KOG1354|consen  398 S---VDALDFRKKILHTAWHPKENSIAVAATNN  427 (433)
T ss_pred             c---cchhhhhhHHHhhccCCccceeeeeecCc
Confidence            1   11111224456678999888888877764

>KOG4547|consensus

Probab=99.49  E-value=2.1e-11  Score=104.88  Aligned_cols=183  Identities=19%  Similarity=0.262  Sum_probs=151.0

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeC---CCCCeEEEEEe------C--------------CCCEEEEEeCCCcEEEEeC
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVG---HKQDVTCARFH------P--------------KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~i~~i~~~------~--------------~~~~l~~~~~dg~i~i~d~  120 (351)
                      ++....||.+++|+...++....|..   -.+..++..|.      |              +...++-|...|.|.+|++
T Consensus         8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~   87 (541)
T KOG4547|consen    8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV   87 (541)
T ss_pred             EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence            38888999999999999887766642   12344444442      2              3346788888999999999


Q ss_pred             CCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          121 TDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       121 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      ..++....+.  .|.+.|.++.++.+-..|.+++.   |+.+..|+....+.+..++.....+.+++.+||++.+++++ 
T Consensus        88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a---d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA---DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             cCCeEEEEEecCCCCCcceeeecccccCceEecCC---ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9999888775  58899999999999899999998   99999999999999999988888899999999999999986 


Q ss_pred             CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC-----CCEEEE-EeCCCeEEEEeCCC
Q psy519          199 DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT-----GETLVT-GSLTGTVQFYGWPS  252 (351)
Q Consensus       199 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~i~~~~~  252 (351)
                       ++|++||+++++.+..|. +|.++|+++.|-.+     |.++++ ...+.-+.+|-+..
T Consensus       164 -~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 -RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence             579999999999999986 67799999999876     666655 44466677887665

>KOG2315|consensus

Probab=99.48  E-value=9.2e-11  Score=100.45  Aligned_cols=287  Identities=13%  Similarity=0.122  Sum_probs=185.6

Q ss_pred             CCCceEEEecCCc-----cCCC---ccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC
Q psy519           33 SQKNLQSRYLPYY-----TSGH---DMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT  104 (351)
Q Consensus        33 ~~~~i~i~~~~~~-----~~~~---~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~  104 (351)
                      ..-.+.+|+....     ...+   ..+++..+++++|++...+.+..++|++..+...+.+....  ...++.|+|-++
T Consensus         9 sSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~   86 (566)
T KOG2315|consen    9 SSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN   86 (566)
T ss_pred             ccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence            3345778877664     1122   44577889999999988889999999999988654444332  788999999998


Q ss_pred             EEEEE-----eC-----CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe
Q psy519          105 YIGTG-----SY-----DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF  174 (351)
Q Consensus       105 ~l~~~-----~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~  174 (351)
                      +|.+=     ..     .-.+.+|++.++.....+......-.+..|+.|..+.+--.    .+.+++|++.+.+.+.. 
T Consensus        87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----~nev~f~~~~~f~~~~~-  161 (566)
T KOG2315|consen   87 YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----SNEVQFYDLGSFKTIQH-  161 (566)
T ss_pred             ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh----cceEEEEecCCccceee-
Confidence            88542     11     24578999998555444432211115788888876654332    57788888765322111 


Q ss_pred             ccCCCCEEEE----------------------------------------------------EECCCCc-EEEEEcC---
Q psy519          175 SDHVSPVLSI----------------------------------------------------AFSPCGK-YLASGGE---  198 (351)
Q Consensus       175 ~~~~~~i~~~----------------------------------------------------~~~~~~~-~l~~~~~---  198 (351)
                      +-|...+..+                                                    .|++-|. +|+..+.   
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence            1123333344                                                    4444332 1111110   


Q ss_pred             --------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceee--eeecceeEE
Q psy519          199 --------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT--GSLTGTVQFYGWPSASKIG--IGVYPRCAA  266 (351)
Q Consensus       199 --------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~--~~~~~~~~~  266 (351)
                              +..++++++. +. -..+.+...++|.++.|+|+++-+++  |-+-..+.|||++..-...  .++-+.+.|
T Consensus       242 ktn~SYYGEq~Lyll~t~-g~-s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~f  319 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQ-GE-SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFF  319 (566)
T ss_pred             CCCccccccceEEEEEec-Cc-eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEE
Confidence                    1234444443 11 12233455689999999999986654  5567899999988654433  366778999


Q ss_pred             ecCCceeeeeeccceeeEEEeeeceeCceEEE----eeEEEEecCCceeeccEE-----EecCCcccccee
Q psy519          267 QPVGFEAATLAANSRVRTLREMHEIVGPVVVV----ESFIVEIRPDKWYEANLI-----VLDDDLKECNLE  328 (351)
Q Consensus       267 s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~  328 (351)
                      +|.|..++.++-+.--+.+.+||...-+.+.-    .+...+|+|||.|..++.     ..|+.+++|+..
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999999999888999999877442211    123368999999874443     368889999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=7.5e-10  Score=90.37  Aligned_cols=255  Identities=14%  Similarity=0.136  Sum_probs=165.7

Q ss_pred             CCcEEEEeCCCCe-ee--EEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCC--CceeE--EeccCCCCeEEE
Q psy519           70 DTTARLWSLEQMY-PL--RIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITD--GASVR--VFSDHVSPVLSI  139 (351)
Q Consensus        70 d~~i~vw~~~~~~-~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~--~~~~~--~~~~~~~~i~~~  139 (351)
                      +.-|++|++.+.+ .+  ...-.+....+-++|+|+.+.|.++..+   |.|--|.++.  |+...  .......+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            6789999987422 11  1122456678889999999999888654   6677776654  44322  222233444889


Q ss_pred             EEccCCCEEEEEecCCCCCeEEEEEccC-CceeE--EeccCCCC----------EEEEEECCCCcEEEEEcC-CCeEEEE
Q psy519          140 AFSPCGKYLASGGTGSYDKAVRLWSITD-GASVR--VFSDHVSP----------VLSIAFSPCGKYLASGGE-DGLVLTH  205 (351)
Q Consensus       140 ~~~~~~~~l~~~~~~~~d~~i~i~d~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i~  205 (351)
                      +++++|++++++...  .|.|.++-++. |....  ....|.+.          +....+.|+++++++..- .-.|.+|
T Consensus        95 svd~~g~~vf~AnY~--~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          95 SVDEDGRFVFVANYH--SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EECCCCCEEEEEEcc--CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            999999999998774  68999999866 32211  11223333          778899999999988753 3469999


Q ss_pred             EcCCCcEEEE--eeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC--ceeee-------------eecceeEEe
Q psy519          206 ELTTGRVISR--FHLQEHEPVTSLVWSVTGETLVTGSL-TGTVQFYGWPSA--SKIGI-------------GVYPRCAAQ  267 (351)
Q Consensus       206 d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~--~~~~~-------------~~~~~~~~s  267 (351)
                      ++..+.....  .........+.+.|+|++++....++ +++|.+|.....  +....             .....+.++
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            9997764432  22344567899999999999887766 899999999874  22221             233468889


Q ss_pred             cCCceeeeeeccceeeEEEee--eceeCceEEEee--------EEEEecCCceeeccEEEecCCcccccee
Q psy519          268 PVGFEAATLAANSRVRTLREM--HEIVGPVVVVES--------FIVEIRPDKWYEANLIVLDDDLKECNLE  328 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (351)
                      |+|++|.+....-.  .|-.+  +..+|+...+..        +...|.+++.++...-...+++......
T Consensus       253 ~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         253 PDGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            99998765544333  22222  223343332222        1246788888877665556666655543

>KOG1064|consensus

Probab=99.47  E-value=3.3e-13  Score=128.85  Aligned_cols=198  Identities=22%  Similarity=0.293  Sum_probs=163.7

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      ...+-..|.++.-+|...+ ++|+.||.+++|....++.+..++ .....++.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            4455677888888888777 999999999999998888776664 334789999999999999999999999999986 5


Q ss_pred             ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC---ceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      ++....+.|......+.|-.  ..+++++..+.++.+.+||.--.   ..+.  +.|.+.++++++.|..+.|++|+.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            66666777888888888864  77888887777899999996532   2233  67999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG  259 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  259 (351)
                      .|++||++..+.++.+..          +. ...++++|+..|.++||++.....++..
T Consensus      2359 ~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            999999998877766542          43 5678999999999999999987766653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=1.1e-09  Score=92.62  Aligned_cols=248  Identities=11%  Similarity=0.031  Sum_probs=155.3

Q ss_pred             CceEEEecCCc------cCCCccceEEEEECCCCcE--EEEe---------CCCcEEEEeCCCCeeeEEeeCCCC-----
Q psy519           35 KNLQSRYLPYY------TSGHDMTVWSVEACSKGLA--LTGS---------RDTTARLWSLEQMYPLRIFVGHKQ-----   92 (351)
Q Consensus        35 ~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~--~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~-----   92 (351)
                      ++|.+.|..+.      ..+.  .-..+ ++||++.  ++.+         .+..|.+||..+.+.+..+.....     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            78999998877      1121  12234 8999976  5556         689999999999999888764222     


Q ss_pred             --CeEEEEEeCCCCEEEEEe-C-CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC-
Q psy519           93 --DVTCARFHPKITYIGTGS-Y-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD-  167 (351)
Q Consensus        93 --~i~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-  167 (351)
                        ....++++|||+++++.. . +..|.+.|+.+++.+..+.- .+...-...+++...+.+.     ||......+.. 
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~-----Dg~~~~v~~d~~  177 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCR-----DGSLAKVGYGTK  177 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEee-----cCceEEEEecCC
Confidence              234789999999998776 3 68999999999999888764 2233333333333333332     55555443332 


Q ss_pred             Ccee-EE---eccCCCCE-EEEEECC-CCcEEEEEcCCCeEEEEEcCCC-----cEEEEeecc------CCCCEEEEEEc
Q psy519          168 GASV-RV---FSDHVSPV-LSIAFSP-CGKYLASGGEDGLVLTHELTTG-----RVISRFHLQ------EHEPVTSLVWS  230 (351)
Q Consensus       168 ~~~~-~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~------~~~~v~~~~~~  230 (351)
                      ++.. ..   +.....++ ..-.|.+ +|+++.+..+ |.|.+.|+...     .....+...      ....+.-++++
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~  256 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH  256 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence            2211 11   11100000 0013455 8888888877 99999996443     222222111      11234559999


Q ss_pred             CCCCEEEEEe----------CCCeEEEEeCCCCceeee----eecceeEEecCCc-eeeeeeccceeeEEEeeeceeCc
Q psy519          231 VTGETLVTGS----------LTGTVQFYGWPSASKIGI----GVYPRCAAQPVGF-EAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       231 ~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ++++.++++.          ..+.|.++|..+++.+..    .....++++||++ .+.+....  ...+.+.|..+++
T Consensus       257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k  333 (352)
T TIGR02658       257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGK  333 (352)
T ss_pred             CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCe
Confidence            9999888743          125899999999998875    4456899999999 55444422  2235566666665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409|consensus

Probab=99.47  E-value=6.5e-12  Score=101.17  Aligned_cols=243  Identities=14%  Similarity=0.214  Sum_probs=181.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      +..+||...+++...-|.  .+-+++.+.|.++++|--...       ......+++++.+.++... +.|-..|++.-+
T Consensus        18 ~~~eG~~d~vn~~~l~~~--e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPK--EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhcCchhhhhhheeccC--CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            445788888998888888  888999999999999965554       3344678899999988866 788888999988


Q ss_pred             eCC----CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           77 SLE----QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        77 ~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      .+.    .....+.+..|...+..+-|+.....+++.+.|..+.---.+.+..+.... ...+.+++.+.-.  +...|.
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd  172 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGD  172 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecc
Confidence            654    445667777899999999999888999999999887554445554332221 0111112222111  444444


Q ss_pred             cCCCCCeEEEEEc--cCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          153 TGSYDKAVRLWSI--TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       153 ~~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                      .   .+.|.+-.+  ..-..+..+.+|...+.+++|.|....+.+|..|..+.+||+.-.+-+.-....+...|..+...
T Consensus       173 ~---~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  173 H---SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             c---ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            4   566555443  34467788899999999999999999999999999999999976554444334566788999888


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      +.-+.+.+++.||.|.+|+++....
T Consensus       250 ~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhheeeeeccCCCeEEEEeccceee
Confidence            8888999999999999999986543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.47  E-value=3.1e-10  Score=110.43  Aligned_cols=236  Identities=14%  Similarity=0.124  Sum_probs=160.1

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc----cC--C------------CccceEEEEECCCCc-E-EEEeCCCcEE
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY----TS--G------------HDMTVWSVEACSKGL-A-LTGSRDTTAR   74 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~--~------------~~~~i~~~~~~~~~~-~-~~~~~d~~i~   74 (351)
                      ..+++++.. +.++++-..++.|++++....    ..  +            .-.....+++.+++. + ++-..++.|+
T Consensus       571 ~gvavd~~~-g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLN-NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCC-CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            357888751 556666677888999998765    10  1            112357889988775 4 5555567899


Q ss_pred             EEeCCCCeeeEEeeCC-----------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEecc-----
Q psy519           75 LWSLEQMYPLRIFVGH-----------------KQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSD-----  131 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~-----------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  131 (351)
                      ++|+.++.. .++.+-                 -.....++++| ++..+++.+.++.|++||..++... .+.+     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            999887653 333110                 11346799999 5566667677899999998776532 1111     


Q ss_pred             ----------CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe-------------ccC--------CCC
Q psy519          132 ----------HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF-------------SDH--------VSP  180 (351)
Q Consensus       132 ----------~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-------------~~~--------~~~  180 (351)
                                .......++++|+++.|+++...  ++.|++||+.++......             ...        -..
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                      11235679999999866665442  789999999876432111             000        112


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ------------EHEPVTSLVWSVTGETLVTGSLTGTVQFY  248 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  248 (351)
                      ...++++++|+++++-..++.|++||..++.........            .-.....++++++|+++++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            458899999998888889999999999877654332111            01257889999999988888889999999


Q ss_pred             eCCCCce
Q psy519          249 GWPSASK  255 (351)
Q Consensus       249 ~~~~~~~  255 (351)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9988764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=7.8e-10  Score=93.56  Aligned_cols=259  Identities=15%  Similarity=0.031  Sum_probs=161.3

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEeCCCCceeEEeccCCC------
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY----------DKAVRLWSITDGASVRVFSDHVS------  134 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~------  134 (351)
                      ++|.|.|..+++.+..+.....+- .+ ++||++.|+++..          +..|.+||..+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999988887554443 35 9999998877765          68999999999999888763222      


Q ss_pred             -CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC-Cc-
Q psy519          135 -PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT-GR-  211 (351)
Q Consensus       135 -~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~-  211 (351)
                       ....++++|||+++++... +.+..|.+.|+.+++.+.++.-.. ...-...+++..++  -+.||......+.+ ++ 
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             CccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEE--EeecCceEEEEecCCCce
Confidence             2347899999999998753 226899999999999988876422 22222222222221  12344433322221 11 


Q ss_pred             EEEEeec-cC-CCCE-EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-----eeee------------eecceeEEecCC
Q psy519          212 VISRFHL-QE-HEPV-TSLVWSV-TGETLVTGSLTGTVQFYGWPSAS-----KIGI------------GVYPRCAAQPVG  270 (351)
Q Consensus       212 ~~~~~~~-~~-~~~v-~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~------------~~~~~~~~s~~~  270 (351)
                      ....... .. ..++ ..-.|.+ +|+++.+..+ |.|.+.|+....     ....            ..+..++++|++
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg  259 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR  259 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence            1111111 01 0000 0014455 8888877766 999999964432     2221            111238999999


Q ss_pred             ceeeeeeccce-------eeEEEeeeceeCceEEEee-----EEEEecCCce-eeccEEEecCCccccceeeeeeeeec
Q psy519          271 FEAATLAANSR-------VRTLREMHEIVGPVVVVES-----FIVEIRPDKW-YEANLIVLDDDLKECNLETYSQMIPV  336 (351)
Q Consensus       271 ~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~  336 (351)
                      +.+.++...+.       -..+.+++..+++......     ..+.++||++ .+...-..++++..+|..+......+
T Consensus       260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            98777553221       1356666766666443221     2368999998 44434335678999999888776665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.44  E-value=7.9e-10  Score=93.17  Aligned_cols=215  Identities=17%  Similarity=0.154  Sum_probs=159.6

Q ss_pred             ECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeC------CCCC-----eEEEE-EeC-CCCEEEEEeCCCcEEEEeCCCCc
Q psy519           58 ACSKGLALTGSRDTTARLWSLEQMYPLRIFVG------HKQD-----VTCAR-FHP-KITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        58 ~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~-----i~~i~-~~~-~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      .+.||+.+.-+..|.|.+||.++.+....--+      ...+     ..-+. |++ +|.+++..+ .|...+.+...+-
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe
Confidence            45678888888889999999987543221111      0111     11111 333 688888887 4778888876665


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC-eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      .++.  ++...|+-..+.-+++-++.|..   || .+-+||.++++. ..+...-+.|.++..+|+|++++++.....+.
T Consensus       353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~---dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~  426 (668)
T COG4946         353 SIQV--GKKGGVRYRRIQVDPEGDVIGTN---DGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELW  426 (668)
T ss_pred             eEEc--CCCCceEEEEEccCCcceEEecc---CCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence            5544  35666888888888888888888   88 899999887764 44555667899999999999999999999999


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceeeeeec----ceeEEecCCceeee
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG----TVQFYGWPSASKIGIGVY----PRCAAQPVGFEAAT  275 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~~~~~~~~~~~~~~----~~~~~s~~~~~~~~  275 (351)
                      +.|+.+++... +.....+-|..+.|+|+++++|-+--+|    .|+++|+.+++.......    .+.+|-|++++|..
T Consensus       427 vididngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         427 VIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEEecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence            99999987543 4434557899999999999999987765    699999999988766433    35788899998877


Q ss_pred             eeccc
Q psy519          276 LAANS  280 (351)
Q Consensus       276 ~~~~~  280 (351)
                      .+...
T Consensus       506 Ls~Rs  510 (668)
T COG4946         506 LSARS  510 (668)
T ss_pred             Eeccc
Confidence            76544

>KOG1064|consensus

Probab=99.44  E-value=8.4e-13  Score=126.19  Aligned_cols=195  Identities=16%  Similarity=0.210  Sum_probs=157.5

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      +.+-..|.++.=+|.  ..+.++|+.||.+++|.....      .......|+.+.|+.+|.. ..+..||.+.+|.+. 
T Consensus      2205 k~~v~~v~r~~sHp~--~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS--DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             ecccCceeeecCCCC--CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            345577888999999  999999999999999998766      2233378888999998865 888999999999987 


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGS---YDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      .++....+.|+.....+.|-.  ..+++++   .++.+.+||..-.. .-.....|.+.++++++-|..+.|++|+.   
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr--- 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR--- 2356 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC---
Confidence            566777788999999999874  6677765   46899999964321 11122679999999999999999999999   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                      +|.|++||++..+.++.++.         +. ...++++|+..|.++||++..-..++.+...|
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            99999999998887777654         44 56789999999999999998887777765444

>KOG0974|consensus

Probab=99.43  E-value=6.5e-12  Score=114.56  Aligned_cols=185  Identities=20%  Similarity=0.276  Sum_probs=147.9

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc----cCCCccce-----EEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEE
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTV-----WSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i-----~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~   86 (351)
                      ..+.-+  .+.++.+..+..+.+|+....    ...+...+     .-+.++++..+ ++|+.-+.|.+|+....+.-..
T Consensus        93 ~~l~~e--~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   93 AKLFEE--NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             cchhhh--cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence            344445  677888888899999999877    22222222     12234455555 8888899999999874443346


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE-EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEc
Q psy519           87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus        87 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                      +.+|.+.|..+.|+.||+++++.+.|.++++|++.+.+... ..-+|...+..++|.|+  .+++++.   |.+.++|+.
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge---dctcrvW~~  245 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE---DCTCRVWGV  245 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc---ceEEEEEec
Confidence            78999999999999999999999999999999999988776 56679999999999987  8999999   999999975


Q ss_pred             cCCceeEEeccCC-CCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          166 TDGASVRVFSDHV-SPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       166 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                       ++..+..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus       246 -~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  246 -NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence             455566777665 4688999999999999999999999999753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=7.5e-10  Score=93.28  Aligned_cols=175  Identities=13%  Similarity=0.119  Sum_probs=135.6

Q ss_pred             ecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCC-cEEEEeCCCCeeeEEeeCCCCC
Q psy519           19 FKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDT-TARLWSLEQMYPLRIFVGHKQD   93 (351)
Q Consensus        19 ~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~   93 (351)
                      |++-+ |++++..+. |...+.+...+   .-+|.+.|.-..+..++.- +.|..|| .+-|+|.++++.. .+...-+.
T Consensus       327 fa~~~-Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~  403 (668)
T COG4946         327 FAVVN-GDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGN  403 (668)
T ss_pred             hccCC-CcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccc
Confidence            55532 788888765 66777766665   5578888888888777655 8899998 8999999988654 45566778


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC-CCCeEEEEEccCCceeE
Q psy519           94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS-YDKAVRLWSITDGASVR  172 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~d~~i~i~d~~~~~~~~  172 (351)
                      |.++..+|+|++++.+.....+.+.|+.+++....-+...+-|+.++|+|+++++|.+-... ....|++||+..++...
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            99999999999999999999999999999987776677788999999999999999876511 13469999998776544


Q ss_pred             EeccCCCCEEEEEECCCCcEEEEEc
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                      .. .....=.+-+|.||+++|.--+
T Consensus       484 vT-T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         484 VT-TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ec-CCcccccCcccCCCCcEEEEEe
Confidence            43 3333345678999999877554

>KOG4532|consensus

Probab=99.41  E-value=1.6e-10  Score=90.26  Aligned_cols=234  Identities=12%  Similarity=-0.013  Sum_probs=156.8

Q ss_pred             eeecCCc---cccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC--cEEEEeCCCcEEEEeCCCCeeeE
Q psy519           17 NSFKPET---VEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG--LALTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        17 ~~~sp~~---~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~--~~~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      +.|-|..   ...+||.|+..|...+|...+.      ...|...|.-..=.-+.  .+..++.|.++++.+++.+....
T Consensus        73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~  152 (344)
T KOG4532|consen   73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF  152 (344)
T ss_pred             ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc
Confidence            5676630   1358999999999999998865      11222222211111122  33678889999998887554333


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-e-eE-EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-S-VR-VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ......-.+.++++++|++++++.+....|..|.+.... . +. ......+.-.+..|+.....+|++..   ||.+.|
T Consensus       153 ~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q---dg~~~I  229 (344)
T KOG4532|consen  153 AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ---DGTCAI  229 (344)
T ss_pred             eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec---CCcEEE
Confidence            322222347889999999999999999999999986532 2 22 22334455577899999999999999   999999


Q ss_pred             EEccCCceeE-----EeccCCCCEEEEEECCCC--cEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-------CCEEEEE
Q psy519          163 WSITDGASVR-----VFSDHVSPVLSIAFSPCG--KYLASGGEDGLVLTHELTTGRVISRFHLQEH-------EPVTSLV  228 (351)
Q Consensus       163 ~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~  228 (351)
                      ||+|......     +-..|.+.++.+.|++-|  .+|+..-.-+.+.+.|++++...+.+.....       ..+..-.
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence            9999754322     234588999999999865  3555555678899999999876665543222       2366777


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |+.++.-+.+.+++ .+.-|++.+..
T Consensus       310 f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  310 FNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             ccCCCcccccccch-hhheeeccccc
Confidence            77776666555443 44555555443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.5e-09  Score=94.20  Aligned_cols=195  Identities=8%  Similarity=-0.036  Sum_probs=127.9

Q ss_pred             ceEEEEECCCCc-E-EEEeC---CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEE-eC--CCcEEEEeCCCC
Q psy519           52 TVWSVEACSKGL-A-LTGSR---DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTG-SY--DKAVRLWSITDG  123 (351)
Q Consensus        52 ~i~~~~~~~~~~-~-~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~--dg~i~i~d~~~~  123 (351)
                      ......|+|+|+ + +..+.   +..|+++|+.+++..... ...+......|+|||+.++.. +.  +..|+++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            677899999996 3 32222   457999999888765443 345556678899999877654 32  356888898877


Q ss_pred             ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC----
Q psy519          124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED----  199 (351)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  199 (351)
                      +.. .+..+........|+|||+.|+..+.......|+++|+.+++..+.... ..  ....|+|||+.++..+..    
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence            643 3433333344568999999888776422233788899987765443322 11  134899999988766543    


Q ss_pred             -----CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCc
Q psy519          200 -----GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSAS  254 (351)
Q Consensus       200 -----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~  254 (351)
                           ..|.+.|+.++... .+..  ........|+|||+.++..+.+   ..+.+.++....
T Consensus       344 ~~~~~~~I~v~d~~~g~~~-~LT~--~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIR-RLTA--NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             cCCCCcEEEEEECCCCCeE-ECCC--CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence                 36888898877643 3322  2233468999999988776543   236666665543

>KOG4190|consensus

Probab=99.40  E-value=7e-13  Score=113.22  Aligned_cols=233  Identities=17%  Similarity=0.227  Sum_probs=162.1

Q ss_pred             cCCCccceEEEEECCC-CcEEEEeCCCcEEEEeCCC-------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy519           46 TSGHDMTVWSVEACSK-GLALTGSRDTTARLWSLEQ-------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL  117 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~-~~~~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  117 (351)
                      +.+|.+.|..++-..+ +.+++++.|++|++|.++.       ..+..+++.|+.+|..+.|-.+.+++++  .||-|++
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHl  808 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHL  808 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCccee
Confidence            6789998888765444 4669999999999999852       3366788999999999999988877765  4889999


Q ss_pred             EeCCCCceeEEecc-----CCCCeEEEEEccCCCEEEEE-ecCCCCCeEEEEEccCCceeEEec-----cCCCCEEEEEE
Q psy519          118 WSITDGASVRVFSD-----HVSPVLSIAFSPCGKYLASG-GTGSYDKAVRLWSITDGASVRVFS-----DHVSPVLSIAF  186 (351)
Q Consensus       118 ~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~-~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~  186 (351)
                      ||.--++.+..+..     ..+.|.|+. +-+...++.+ +.   ..+++++|.|..+-...++     +.+..+++++.
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa---eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA---ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc---hhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99987777654321     223344332 1134445544 44   8899999999876554443     34456889999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCceeee-e--ecc
Q psy519          187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF-YGWPSASKIGI-G--VYP  262 (351)
Q Consensus       187 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-~~~~~~~~~~~-~--~~~  262 (351)
                      .|.|+.++++-.+|+|.+.|.++|+.+..+. +-.-....++ .|..+.|+....|..+.+ |..-.+...-. .  +-+
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep  962 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP  962 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence            9999999999999999999999999887664 2222333333 255667777777888888 87665533221 1  112


Q ss_pred             eeEEecCCceeeeeeccceeeEEE
Q psy519          263 RCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       263 ~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      ....-..|..++++..+..++++.
T Consensus       963 ahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  963 AHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhhhccCceeEEeccCcEEEEEe
Confidence            223334566677777776665554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.39  E-value=4.3e-09  Score=86.70  Aligned_cols=215  Identities=12%  Similarity=0.026  Sum_probs=146.8

Q ss_pred             EeeecC-CccccEEEEecCCCceEEEecCCc--cCCCccceEEEEEC-CCCcEEEEeCCCcEEEEeCCCCeeeEEeeC--
Q psy519           16 QNSFKP-ETVEDVLANLESQKNLQSRYLPYY--TSGHDMTVWSVEAC-SKGLALTGSRDTTARLWSLEQMYPLRIFVG--   89 (351)
Q Consensus        16 ~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--   89 (351)
                      .+.|.+ +  +.++++--..+.|..|+....  ..........+++. +++.++.+... .+.++|+.+++.......  
T Consensus         4 gp~~d~~~--g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen    4 GPVWDPRD--GRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEET
T ss_pred             ceEEECCC--CEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccC
Confidence            467888 5  777777777899999998877  11111226677777 78887666664 455559988865443332  


Q ss_pred             ---CCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           90 ---HKQDVTCARFHPKITYIGTGSYD--------KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        90 ---~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                         .....+.+++.|+|++.++....        |.+..++.. ++...... .-.....++|+|+++.|+++..  ..+
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds--~~~  156 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS--FNG  156 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET--TTT
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc--ccc
Confidence               34567899999999977776543        567788877 55444333 3456789999999998876543  278


Q ss_pred             eEEEEEccCCce-------eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc-
Q psy519          159 AVRLWSITDGAS-------VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS-  230 (351)
Q Consensus       159 ~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-  230 (351)
                      .|..|++.....       ...+....+..-.+++..+|++.++....+.|.++|.. |+.+..+... ...+++++|. 
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg  234 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGG  234 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEES
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEEC
Confidence            899999864322       11222222347789999999988888788999999987 8888888766 3489999994 


Q ss_pred             CCCCEEEEE
Q psy519          231 VTGETLVTG  239 (351)
Q Consensus       231 ~~~~~l~~~  239 (351)
                      ++.+.|+..
T Consensus       235 ~~~~~L~vT  243 (246)
T PF08450_consen  235 PDGKTLYVT  243 (246)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            666666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.39  E-value=1.2e-09  Score=104.44  Aligned_cols=234  Identities=17%  Similarity=0.212  Sum_probs=154.7

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----------------------------cCC--------------
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------------------------TSG--------------   48 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------------------------~~~--------------   48 (351)
                      ...|.+++||||  +++|+..+.++++.+....-.                            +.|              
T Consensus       120 d~GI~a~~WSPD--~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  120 DSGILAASWSPD--EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             cCcEEEEEECCC--cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            468999999999  999999998888876543221                            100              


Q ss_pred             ----------CccceEEEEECCCCcE-EEEeC------CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy519           49 ----------HDMTVWSVEACSKGLA-LTGSR------DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY  111 (351)
Q Consensus        49 ----------~~~~i~~~~~~~~~~~-~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  111 (351)
                                ....-..+.|-.||.+ ++.+-      -..++||+-+ |....+-..-.+--.+++|.|.|++|++.-.
T Consensus       198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence                      1123456789999988 44432      2579999966 5543333322233357899999999998764


Q ss_pred             ---CCcEEEEeCCCCceeEEec----cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc--eeEEec-cCCCCE
Q psy519          112 ---DKAVRLWSITDGASVRVFS----DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA--SVRVFS-DHVSPV  181 (351)
Q Consensus       112 ---dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i  181 (351)
                         ...|.+|. ++|-....|.    .....|..++|++++..||....   | .|++|-..+..  ..+.+. .....+
T Consensus       277 ~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~---~-~vqLWt~~NYHWYLKqei~~~~~~~~  351 (928)
T PF04762_consen  277 LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE---D-RVQLWTRSNYHWYLKQEIRFSSSESV  351 (928)
T ss_pred             cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec---C-CceEEEeeCCEEEEEEEEEccCCCCC
Confidence               34577776 4454444332    34578999999999999999765   4 49999987653  222222 122334


Q ss_pred             EEEEECC-CCcEEEEEcCCCeEEEEEcC----C----------------CcEE--------------EEeeccCCCCEEE
Q psy519          182 LSIAFSP-CGKYLASGGEDGLVLTHELT----T----------------GRVI--------------SRFHLQEHEPVTS  226 (351)
Q Consensus       182 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~----~----------------~~~~--------------~~~~~~~~~~v~~  226 (351)
                      ..+.|+| +...|...+.+|.+..+++.    .                |..+              ..+.+.-..+|..
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~  431 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND  431 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence            5599999 44567777766666555432    1                1111              1112233468999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ++|++++..+++-..||.+.+|....
T Consensus       432 vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  432 VAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEEeCCCCeEEEEECCCCEEEEEecC
Confidence            99999998899999999999998654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.38  E-value=8.2e-10  Score=97.04  Aligned_cols=249  Identities=12%  Similarity=0.057  Sum_probs=150.6

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeE-----
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT-----   95 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~-----   95 (351)
                      +..+++++.++.+..+|..++    .......+.+.-...++.++.+..++.+..||.++++.+..+........     
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~  184 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA  184 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence            456666777788888877655    11111222211111245557777899999999999988777654332211     


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCC----C---eEEEEEcc--CCCEEEEEecCCCCCeEEEEEcc
Q psy519           96 CARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS----P---VLSIAFSP--CGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus        96 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .....  +..++.+..++.+..+|.++|+.+........    .   ...+.-+|  .+..+++++.   ++.++.||.+
T Consensus       185 sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~  259 (377)
T TIGR03300       185 SPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---QGRVAALDLR  259 (377)
T ss_pred             CCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---CCEEEEEECC
Confidence            11122  24677788889999999999987654321100    0   00011111  3456777777   8999999999


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      +++.+......  ....+.  .++..+++++.+|.+..+|..+++.+-...........+...  .+..+++++.+|.++
T Consensus       260 tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       260 SGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH  333 (377)
T ss_pred             CCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence            99877665421  111222  246678888899999999999998775542111112222222  467889999999999


Q ss_pred             EEeCCCCceeeeeecce--eEEec--CCceeeeeeccceeeE
Q psy519          247 FYGWPSASKIGIGVYPR--CAAQP--VGFEAATLAANSRVRT  284 (351)
Q Consensus       247 i~~~~~~~~~~~~~~~~--~~~s~--~~~~~~~~~~~~~~~~  284 (351)
                      ++|..+++.+.......  +..+|  .+..+.+++.+|.+..
T Consensus       334 ~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~  375 (377)
T TIGR03300       334 WLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA  375 (377)
T ss_pred             EEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence            99999998886644332  22233  2234556666665543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409|consensus

Probab=99.38  E-value=1.2e-10  Score=94.11  Aligned_cols=196  Identities=16%  Similarity=0.198  Sum_probs=148.0

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .+--+.+++++.++++  ...|+.|-..|++.-+.+...         ...|...+..+-|+-.... ++.+.|..+.-.
T Consensus        64 ~~~mP~~~~~~~y~~e--~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~h  141 (404)
T KOG1409|consen   64 YHYMPSPCSAMEYVSE--SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWH  141 (404)
T ss_pred             hhhCCCCceEeeeecc--ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEE
Confidence            3445688999999999  999999999999998887665         6679999999999977777 888888777655


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC--CCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT--DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      -.+.+..+..+.- ....+++.+.-.  +...|...|.+....+.  .-..+..+.+|.+.+++++|.|....+++|.. 
T Consensus       142 c~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-  217 (404)
T KOG1409|consen  142 CTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-  217 (404)
T ss_pred             eeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-
Confidence            5555554433321 111112222111  45566666666655543  34567788999999999999999999999998 


Q ss_pred             CCCCeEEEEEccCCc-eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          155 SYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                        |..+.+||+--++ ....+.+|...+..+...+--+.+.+++.||.|.+|+++..
T Consensus       218 --d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  218 --DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             --cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence              9999999986543 34456788899999988888899999999999999998754

>KOG2041|consensus

Probab=99.33  E-value=9.5e-11  Score=103.29  Aligned_cols=228  Identities=12%  Similarity=0.049  Sum_probs=167.1

Q ss_pred             CccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe---------------eeEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy519           49 HDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY---------------PLRIFVGHKQDVTCARFHPKITYIGTGSYD  112 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  112 (351)
                      ......|+.|+.+..+ +.|+.||.++|..+.+..               .-+++.+|+..|.-+.|+.+.+.|-++..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3456789999988777 999999999999886421               124567999999999999999999999999


Q ss_pred             CcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC
Q psy519          113 KAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  190 (351)
Q Consensus       113 g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  190 (351)
                      |.|.+|-+-.+.....+.  ..++-|.+++|+.+|..++....   ||.|.+=.+...+ +..-.-.......+.|++|.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---DGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---DGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---cCCEEEEeeccce-ecchhcchheccceeecccH
Confidence            999999998877554442  35678999999999999999999   9999887775433 22111112234578999999


Q ss_pred             cEEEEEcCCCeEEEEEcCCCc-------EEEEee---ccCCCCEEEEEEc--------CCCCEEEEEeCCCeEEEEeCCC
Q psy519          191 KYLASGGEDGLVLTHELTTGR-------VISRFH---LQEHEPVTSLVWS--------VTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       191 ~~l~~~~~dg~i~i~d~~~~~-------~~~~~~---~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +.++.+-.+|.+.+||....-       +.-...   ......+..+.|.        |+...|+++-.+|.+.+-.-.+
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            999988899999999975321       100000   0111235566664        4778999999999998876554


Q ss_pred             Cceeee----eecceeEEecCCceeeeeeccc
Q psy519          253 ASKIGI----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       253 ~~~~~~----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ......    ..+....|+|+|..+++.+.+.
T Consensus       249 D~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  249 DPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             CCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence            432221    4556789999999999887765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=8.9e-11  Score=93.63  Aligned_cols=234  Identities=16%  Similarity=0.225  Sum_probs=162.2

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCc------------cceEEEEECCCCc---EE
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHD------------MTVWSVEACSKGL---AL   65 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~------------~~i~~~~~~~~~~---~~   65 (351)
                      ...|+++.|...  |.+|++|...|.|.++.-...          +++|.            ..|..+.|..++.   ++
T Consensus        26 ad~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccc--cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            467899999999  999999999999999876654          33443            5688888887653   47


Q ss_pred             EEeCCCcEEEEeCCCCe------------------------------------------eeEEe-eCCCCCeEEEEEeCC
Q psy519           66 TGSRDTTARLWSLEQMY------------------------------------------PLRIF-VGHKQDVTCARFHPK  102 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~------------------------------------------~~~~~-~~~~~~i~~i~~~~~  102 (351)
                      ..+.|.+|++|.+....                                          +.+.+ ..|...|.++.++.|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            88899999999874310                                          00111 346677888999988


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce---eEEeccC-----CCCeEEEEEccCC-CEEEEEecCCCCCeEEEEEccCCce---
Q psy519          103 ITYIGTGSYDKAVRLWSITDGAS---VRVFSDH-----VSPVLSIAFSPCG-KYLASGGTGSYDKAVRLWSITDGAS---  170 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~---  170 (351)
                      ...++++ .|-.|.+|++.-...   +-.++.|     ..-|++..|+|.. +.+...+.   .|.|++-|+|....   
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS---kG~Ikl~DlRq~alcdn  259 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS---KGEIKLNDLRQSALCDN  259 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC---CCcEEehhhhhhhhccC
Confidence            8777765 578899999864322   2222333     3467889999954 44444455   89999999985321   


Q ss_pred             ---eE----------EeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC-cEEEEeeccC-----------CC---
Q psy519          171 ---VR----------VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG-RVISRFHLQE-----------HE---  222 (351)
Q Consensus       171 ---~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-----------~~---  222 (351)
                         +.          -+......|..+.|+++|+++++-.. -++++||.+.. .+++++....           ..   
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence               11          11223456889999999999988764 57999999754 4455543211           11   


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .-..+.|+-|.+.+++|+..+..-+|-..
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeEEEEecCCcccccccccccceeeeccc
Confidence            12457888888899999988888887644

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=1.6e-08  Score=88.89  Aligned_cols=256  Identities=14%  Similarity=0.066  Sum_probs=157.2

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccce-EEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEE-EE
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTV-WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC-AR   98 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i-~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~-i~   98 (351)
                      ++.+++++.++.+.-+|..++    ...-...+ ..+.. .++.++.++.++.+..+|.++|+.+....... .+.+ ..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~  142 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPL  142 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCE
Confidence            667888888899999997766    00111111 12222 24556788889999999999999887664332 2221 11


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeE-----EEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE
Q psy519           99 FHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL-----SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV  173 (351)
Q Consensus        99 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~  173 (351)
                      .  .+..++.++.++.++.+|.++++.+..+........     +...  .+..++.+..   ++.+..+|.++|+.+..
T Consensus       143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~---~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFA---GGKLVALDLQTGQPLWE  215 (377)
T ss_pred             E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECC---CCEEEEEEccCCCEeee
Confidence            2  245677778899999999999998877653322111     1112  2346667766   89999999999987654


Q ss_pred             eccCCC----CE---EEEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe
Q psy519          174 FSDHVS----PV---LSIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT  244 (351)
Q Consensus       174 ~~~~~~----~i---~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  244 (351)
                      ......    .+   ..+.-+|  .+..+++++.+|.++.+|.++++.+-.....   ......  ..+..+++++.+|.
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~  290 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGV  290 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCce--EeCCEEEEECCCCe
Confidence            321100    00   0111112  3557777888999999999999877655321   112222  24677888889999


Q ss_pred             EEEEeCCCCceeeee-ecc-eeEEe--cCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          245 VQFYGWPSASKIGIG-VYP-RCAAQ--PVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       245 i~i~~~~~~~~~~~~-~~~-~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                      +..+|..+++.+-.. ... ....+  ..+..+.++..++   .+..++..+|+...
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G---~l~~~d~~tG~~~~  344 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEG---YLHWLSREDGSFVA  344 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCC---EEEEEECCCCCEEE
Confidence            999999998766432 111 11111  1345666666665   45556666777543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=3.5e-08  Score=96.40  Aligned_cols=233  Identities=14%  Similarity=0.114  Sum_probs=150.5

Q ss_pred             EEEEECCC-CcE-EEEeCCCcEEEEeCCCCeeeEEeeC-C-------------CCCeEEEEEeCCCCEEEEEe-CCCcEE
Q psy519           54 WSVEACSK-GLA-LTGSRDTTARLWSLEQMYPLRIFVG-H-------------KQDVTCARFHPKITYIGTGS-YDKAVR  116 (351)
Q Consensus        54 ~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~~~~~~~-~-------------~~~i~~i~~~~~~~~l~~~~-~dg~i~  116 (351)
                      ..+++++. +.+ ++-..++.|+++|... +.+..+.+ .             -.....+++.++++.|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35777764 555 7777888999999764 33333321 1             12357899999888665554 457899


Q ss_pred             EEeCCCCceeEEeccC-----------------CCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCceeEEecc--
Q psy519          117 LWSITDGASVRVFSDH-----------------VSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSD--  176 (351)
Q Consensus       117 i~d~~~~~~~~~~~~~-----------------~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--  176 (351)
                      .+|..++. +.++.+.                 -.....++++|+ +.++++...   ++.|++||..++... .+.+  
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---~~~I~v~d~~~g~v~-~~~G~G  724 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---QHQIWEYNISDGVTR-VFSGDG  724 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---CCeEEEEECCCCeEE-EEecCC
Confidence            99987654 3332110                 113367999995 445555444   889999998776432 1111  


Q ss_pred             -------------CCCCEEEEEECCCCcEE-EEEcCCCeEEEEEcCCCcEEEEe-----------ecc---------CCC
Q psy519          177 -------------HVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRF-----------HLQ---------EHE  222 (351)
Q Consensus       177 -------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~-----------~~~---------~~~  222 (351)
                                   .-.....++++|+++.| ++-+.++.|++||+.++......           ...         ...
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                         01234679999998844 45566789999999876532111           000         011


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------------------eecceeEEecCCceeeeeeccceeeE
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------------------GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------------------~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      ....++++++|+++++-+.+++|++||..++.....                  .....++++++|..+++-..+   ..
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N---n~  881 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN---SL  881 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC---CE
Confidence            356899999999888888899999999987765432                  134468999999855544333   36


Q ss_pred             EEeeeceeCce
Q psy519          285 LREMHEIVGPV  295 (351)
Q Consensus       285 ~~~~~~~~g~~  295 (351)
                      +++|+..++..
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            77777777664

>KOG3914|consensus

Probab=99.27  E-value=1.2e-10  Score=95.88  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=118.3

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce----eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc
Q psy519           94 VTCARFHPKITYIGTGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA  169 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~  169 (351)
                      ...+..++.+++++.+..+....+++.+....    ..... -...-+++.+..+......+........+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34556678888999888888877777765433    11111 12223445555555555555542224555666555444


Q ss_pred             eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          170 SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       170 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      ... +-+|-..+..++|+||+++++++..|..|++-.......+..+.+.|..-|..++.-++ ..|++++.|+++++||
T Consensus       144 ~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 CEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             cch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            433 34899999999999999999999999999998888778888888888899999999764 5589999999999999


Q ss_pred             CCCCceeee
Q psy519          250 WPSASKIGI  258 (351)
Q Consensus       250 ~~~~~~~~~  258 (351)
                      +.+++.++.
T Consensus       222 ~~sgk~L~t  230 (390)
T KOG3914|consen  222 ITSGKLLDT  230 (390)
T ss_pred             cccCCcccc
Confidence            999998875

>KOG0280|consensus

Probab=99.26  E-value=1.1e-09  Score=86.74  Aligned_cols=216  Identities=15%  Similarity=0.095  Sum_probs=149.3

Q ss_pred             CCCceEEEecCCccCC--------CccceEEEEECC---CCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCC------CC
Q psy519           33 SQKNLQSRYLPYYTSG--------HDMTVWSVEACS---KGLA--LTGSRDTTARLWSLEQMYPLRIFVGHK------QD   93 (351)
Q Consensus        33 ~~~~i~i~~~~~~~~~--------~~~~i~~~~~~~---~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~   93 (351)
                      ..|.+.+|++......        ....+..+.|..   +|.+  +-+-..|.|.++..........+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            4567888988776222        234455666653   3332  666778889998876544433333221      12


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCC-c
Q psy519           94 VTCARFHPKITYIGTGSYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDG-A  169 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~-~  169 (351)
                      ..++.|++.+..++++..+|.+.+-+......  ++..+.|..++....|+. +.+.+.+|+.   |+.+..||+|.. +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD---D~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD---DGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC---CceEEEEEecCCcc
Confidence            45788999899999999999999766555443  347788999999999987 4467888888   999999999943 3


Q ss_pred             eeEE-eccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEEEEEEcCCCC-EEEEEeCCCeE
Q psy519          170 SVRV-FSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVTSLVWSVTGE-TLVTGSLTGTV  245 (351)
Q Consensus       170 ~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  245 (351)
                      .+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-  ...+.|..+.++|.-. .++.++.-+-.
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~  278 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGA  278 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCc
Confidence            3322 456888899998877 678999999999999999995 5555443  3347899999999432 33333444445


Q ss_pred             EEEeCCCC
Q psy519          246 QFYGWPSA  253 (351)
Q Consensus       246 ~i~~~~~~  253 (351)
                      +|-+.+.+
T Consensus       279 ki~~~~~~  286 (339)
T KOG0280|consen  279 KILDSSDK  286 (339)
T ss_pred             eEEEeccc
Confidence            66665544

>KOG4714|consensus

Probab=99.26  E-value=1.4e-10  Score=90.24  Aligned_cols=200  Identities=12%  Similarity=0.109  Sum_probs=127.6

Q ss_pred             eEEEEECCCCcEEEEeCCCcEEEEeCCCCeee------------EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy519           53 VWSVEACSKGLALTGSRDTTARLWSLEQMYPL------------RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        53 i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  120 (351)
                      +..+.+..+-.++++..++.+......++.+.            +.+..|.++-.+-+.+-.++.++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            67777777777788888877777665443332            222223322222222234567899999999999997


Q ss_pred             CCCcee-EEeccCCCCeEEEEEccCCCEEEEEecCC--CCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEE
Q psy519          121 TDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGS--YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASG  196 (351)
Q Consensus       121 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  196 (351)
                      +.-..+ .........-.+.++-..++.+.++.-+.  .-+..+.|+++..+.+..-......+.+++-+| +.+.+++|
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg  198 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG  198 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEe
Confidence            652111 11111111112233333556665543210  134567777665433222222233488999999 45677888


Q ss_pred             cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy519          197 GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-TGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +.||.+.+||.++...+..+...|+.++..+.|+| ++..|+++++||.+..||..+
T Consensus       199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999999999998777666667889999999999 678899999999999999875

>KOG4190|consensus

Probab=99.24  E-value=5e-11  Score=102.14  Aligned_cols=233  Identities=15%  Similarity=0.136  Sum_probs=162.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCCcEEEEeCCCcEE
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKGLALTGSRDTTAR   74 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~   74 (351)
                      ..||...|.+++--.+  .+-+++++.|.+|++|.+...            ++.|..+|.++.|-.+.++ .++.|+.|.
T Consensus       731 f~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~-i~ScD~giH  807 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS-IASCDGGIH  807 (1034)
T ss_pred             ccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce-eeeccCcce
Confidence            4689999999876666  788999999999999999776            6789999999999877655 345689999


Q ss_pred             EEeCCCCeeeEEee--CCCCCeEEEEEeC--CCCEEEEE-eCCCcEEEEeCCCCceeEEec-----cCCCCeEEEEEccC
Q psy519           75 LWSLEQMYPLRIFV--GHKQDVTCARFHP--KITYIGTG-SYDKAVRLWSITDGASVRVFS-----DHVSPVLSIAFSPC  144 (351)
Q Consensus        75 vw~~~~~~~~~~~~--~~~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~  144 (351)
                      +||.--++.+....  ...+.+..+..-+  +...+..+ +...+|+++|.+..+....++     +....+++++..+.
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~  887 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK  887 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence            99987666554321  1112233333333  33344444 678899999999887655543     34467899999999


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE-EEcCCCcEEEEeeccCCCC
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT-HELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~  223 (351)
                      |++++++-.   +|.|.+.|.|+|+.+..+...+.....++ .|..+.++....|..+.+ |..-++....+.. +...+
T Consensus       888 GN~lAa~LS---nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k-pppep  962 (1034)
T KOG4190|consen  888 GNKLAAALS---NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK-PPPEP  962 (1034)
T ss_pred             cchhhHHhc---CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC-CCCcc
Confidence            999999988   99999999999999888877766665554 466677777777888888 8776665443332 11111


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          224 VTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      ..-+  -.-|.-|+++...+.+.+|.
T Consensus       963 ahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  963 AHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhh--hccCceeEEeccCcEEEEEe
Confidence            1100  01244566666666666664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.23  E-value=2.1e-08  Score=82.21  Aligned_cols=186  Identities=17%  Similarity=0.082  Sum_probs=124.4

Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCC---CC
Q psy519           60 SKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHV---SP  135 (351)
Q Consensus        60 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~  135 (351)
                      .++.+++++.++.+..||..+|+.+..+... ..+..... .++..+++++.++.++.+|..+|+.+... ....   ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            4566677789999999999999988877642 22211112 23456666778889999999999988874 3221   11


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC----------E-EEEEECCCCcEEEEEcCCCeEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP----------V-LSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      ........+++.++++..   ++.|..+|+++|+.+.........          + ..+.+. ++ .++.++.++.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             B--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEE
T ss_pred             ccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEE
Confidence            222333334788888887   899999999999988777653322          1 233333 44 6777777775444


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +|+.+++.+-..  . ...+..+ ...++..|+.++.++.+..||+.+++.+
T Consensus       188 ~d~~tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  188 VDLATGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EETTTTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            499999866422  2 2223332 3467788888889999999999999764

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.23  E-value=4.5e-08  Score=77.84  Aligned_cols=224  Identities=15%  Similarity=0.142  Sum_probs=133.3

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ++.+++  |++||.. .|..|.+-.....          .....-.=+.++|+||+.+ +.+...|+|+++|+.... +.
T Consensus         3 ~~~~~~--Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf   78 (282)
T PF15492_consen    3 LALSSD--GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF   78 (282)
T ss_pred             eeecCC--CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence            567788  9988876 6677877776665          2222233467999999988 888899999999987533 33


Q ss_pred             EeeC-------CCCCeEEEEEeCCC------CEEEEEeCCCcEEEEeCCCC-----ceeEEe--c-cCCCCeEEEEEccC
Q psy519           86 IFVG-------HKQDVTCARFHPKI------TYIGTGSYDKAVRLWSITDG-----ASVRVF--S-DHVSPVLSIAFSPC  144 (351)
Q Consensus        86 ~~~~-------~~~~i~~i~~~~~~------~~l~~~~~dg~i~i~d~~~~-----~~~~~~--~-~~~~~i~~~~~~~~  144 (351)
                      .+..       -...|.++.|.+..      ..|++-..+|.++-|-+..+     +....+  . .+...|.++.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            3322       12456677775421      24556677888887776322     222222  2 24678999999999


Q ss_pred             CCEEEEEecCCCCC--------eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEe
Q psy519          145 GKYLASGGTGSYDK--------AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF  216 (351)
Q Consensus       145 ~~~l~~~~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  216 (351)
                      .++|++|+....+.        -+.-|-+-++.          |-.....+-+...-......   .+|.+-+.+... .
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~~fs-~  224 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----------PYYKQVTSSEDDITASSKRR---GLLRIPSFKFFS-R  224 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCC----------CcEEEccccCcccccccccc---ceeeccceeeee-c
Confidence            99998887622110        11111111110          11111111111111111111   233332222211 1


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          217 HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       217 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .......|..+..||||..||+...+|.|.+|++++....+.
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            123456899999999999999999999999999998766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.23  E-value=1.7e-07  Score=77.17  Aligned_cols=212  Identities=15%  Similarity=0.051  Sum_probs=135.7

Q ss_pred             EEEECC-CCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeEEecc
Q psy519           55 SVEACS-KGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH-PKITYIGTGSYDKAVRLWSITDGASVRVFSD  131 (351)
Q Consensus        55 ~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  131 (351)
                      ++.|.+ ++.+ ++--..+.|..|+..+++... +....  ...+++. +++ .++.+... .+.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            567887 6777 666678999999998876543 32222  6778888 565 45555544 456669988865443332


Q ss_pred             -----CCCCeEEEEEccCCCEEEEEecCCC---C--CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEE-EEcCCC
Q psy519          132 -----HVSPVLSIAFSPCGKYLASGGTGSY---D--KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGEDG  200 (351)
Q Consensus       132 -----~~~~i~~~~~~~~~~~l~~~~~~~~---d--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  200 (351)
                           .......+++.|+|++.++......   .  +.|..++.. ++..... ..-.....++|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence                 3456788999999997776543110   1  567778876 4433333 3345578999999998766 556788


Q ss_pred             eEEEEEcCCCcE-E---EEe-eccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-----ceeEEe-c
Q psy519          201 LVLTHELTTGRV-I---SRF-HLQEH-EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY-----PRCAAQ-P  268 (351)
Q Consensus       201 ~i~i~d~~~~~~-~---~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~~s-~  268 (351)
                      .|..|++..... +   ..+ ..... .....+++..+|++.++....+.|.+++.+ ++.+....+     ..++|. |
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~  235 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence            899999863221 1   112 22222 248899999999988888788999999977 777665333     355663 4


Q ss_pred             CCceee
Q psy519          269 VGFEAA  274 (351)
Q Consensus       269 ~~~~~~  274 (351)
                      +...|.
T Consensus       236 ~~~~L~  241 (246)
T PF08450_consen  236 DGKTLY  241 (246)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            444433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532|consensus

Probab=99.22  E-value=1.1e-08  Score=80.20  Aligned_cols=237  Identities=11%  Similarity=-0.029  Sum_probs=153.2

Q ss_pred             cCCCceEEEecCCccCCCccceEEEEECCC------CcEEEEeCCCcEEEEeCCCCeee-EEeeCCCCCeEEEEEeC-CC
Q psy519           32 ESQKNLQSRYLPYYTSGHDMTVWSVEACSK------GLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHP-KI  103 (351)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~i~~i~~~~-~~  103 (351)
                      +....+-+|+...+..+-..--..+.|.|.      +.++.|+..|...+|...+.+.. .....|...|+-+.=.. ..
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~  128 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK  128 (344)
T ss_pred             cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc
Confidence            344566777776543222222245666653      34588889999999999866532 22233444332221111 12


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-ceeEE--eccCCCC
Q psy519          104 TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-ASVRV--FSDHVSP  180 (351)
Q Consensus       104 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~--~~~~~~~  180 (351)
                      .-+..++.|.++++.++..+..........-.+.+++++++++++++.+.   ...|..|.+... +.+..  .......
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCC
Confidence            24566788888888888655433333222233788999999999999988   889999988653 22222  2233344


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEe----eccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF----HLQEHEPVTSLVWSVTGE--TLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~~~~~~~  254 (351)
                      -.+..|+.....+|++..||.+.|||++....+...    +..|.+.++.+.|++.|.  +|+..-.-+.+.+.|++++.
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            567889999999999999999999999976544322    234568899999998664  45544456899999999987


Q ss_pred             eeeeeecc-eeEEecCCc
Q psy519          255 KIGIGVYP-RCAAQPVGF  271 (351)
Q Consensus       255 ~~~~~~~~-~~~~s~~~~  271 (351)
                      ......++ ...++|..+
T Consensus       286 ~~q~I~i~~d~~~~~~tq  303 (344)
T KOG4532|consen  286 NHQVIVIPDDVERKHNTQ  303 (344)
T ss_pred             eeeEEecCcccccccccc
Confidence            76654333 344555544

>KOG1912|consensus

Probab=99.21  E-value=6.6e-09  Score=92.72  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=169.0

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC-----------c-E-EEEeCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG-----------L-A-LTGSRDT   71 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~-----------~-~-~~~~~d~   71 (351)
                      |...-.++.|+|.   .++|.|+. ..|.+.|....     ...|...|+.+.|.|..           . + +++...|
T Consensus        14 ~~sN~~A~Dw~~~---GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   14 SRSNRNAADWSPS---GLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             CcccccccccCcc---ceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            4455678999988   46777754 46777776655     67789999999998742           1 2 6777789


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeC---CC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCC
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHP---KI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGK  146 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~  146 (351)
                      .|.+||...+..+..++.|..++..++|-+   +. ..|+.-....++.+|+..+|+.............|+.+.| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            999999999988888999999999999976   33 3556656678999999999999988876677788899999 666


Q ss_pred             EEEEEecCCCCCeEEEEEccC-------CceeEEeccCCC-------------------------CEEEEEECCCCcEEE
Q psy519          147 YLASGGTGSYDKAVRLWSITD-------GASVRVFSDHVS-------------------------PVLSIAFSPCGKYLA  194 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~  194 (351)
                      .+..-+.   .|.+.+-+.-.       ++..+.-..|..                         ....++|+|.-+.++
T Consensus       170 h~~~l~s---~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  170 HFCVLGS---KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             eEEEEcc---CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            6666555   67666665421       222222222211                         012367788665555


Q ss_pred             EEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCC
Q psy519          195 SGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT--GETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       195 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ...-...+.++|++-...+..+.++. +.+.-+.+-|+  ...|++.-.||.+.+|--+.
T Consensus       247 fi~~prellv~dle~~~~l~vvpier-~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIER-GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEecc-CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            55566789999999888888776543 33445556565  45799999999999997654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.18  E-value=2.6e-07  Score=75.76  Aligned_cols=210  Identities=16%  Similarity=0.134  Sum_probs=149.7

Q ss_pred             ceEEEEECCCC-cE-EEEeCCCc-EEEEeCCCCeeeEEeeCCCCCeE--EEEEeCCCCEEEEEeC-----CCcEEEEeCC
Q psy519           52 TVWSVEACSKG-LA-LTGSRDTT-ARLWSLEQMYPLRIFVGHKQDVT--CARFHPKITYIGTGSY-----DKAVRLWSIT  121 (351)
Q Consensus        52 ~i~~~~~~~~~-~~-~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~i~--~i~~~~~~~~l~~~~~-----dg~i~i~d~~  121 (351)
                      ....++.+|.. .. +.+-.-|+ ..+||..+++....+....+...  .-.|++||++|++.-.     .|.|-+||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            44567788844 44 56666554 77899999988877755444332  3579999999998744     4789999998


Q ss_pred             -CCceeEEeccCCCCeEEEEEccCCCEEEEEecC---------------CCCCeEEEEEccCCceeEEec----cCCCCE
Q psy519          122 -DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG---------------SYDKAVRLWSITDGASVRVFS----DHVSPV  181 (351)
Q Consensus       122 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---------------~~d~~i~i~d~~~~~~~~~~~----~~~~~i  181 (351)
                       +.+.+..+..+.-....+.+.|||+.|+++.-+               .++..+...|.++|+.+.+..    .|...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             667788888777777889999999888887421               235677888888898777633    377789


Q ss_pred             EEEEECCCCcEEEEEcCCC-------eEEEEEcCCCcEEEEeecc------CCCCEEEEEEcCCCCEEEEEeC-CCeEEE
Q psy519          182 LSIAFSPCGKYLASGGEDG-------LVLTHELTTGRVISRFHLQ------EHEPVTSLVWSVTGETLVTGSL-TGTVQF  247 (351)
Q Consensus       182 ~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  247 (351)
                      +.+++.++|..++..-..|       .+.+++  .++.+..+...      -..-+-++++++++.++++.+- -|.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            9999999987766553332       233333  33333333221      1246899999999998866655 689999


Q ss_pred             EeCCCCceeeeeecce
Q psy519          248 YGWPSASKIGIGVYPR  263 (351)
Q Consensus       248 ~~~~~~~~~~~~~~~~  263 (351)
                      ||..+++.+....+..
T Consensus       244 ~d~~tg~~~~~~~l~D  259 (305)
T PF07433_consen  244 WDAATGRLLGSVPLPD  259 (305)
T ss_pred             EECCCCCEeeccccCc
Confidence            9999999998766553

>KOG0309|consensus

Probab=99.18  E-value=4.3e-10  Score=99.54  Aligned_cols=235  Identities=18%  Similarity=0.185  Sum_probs=166.1

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCC--ccceEEEEECCCC--cE-EEEeCCCcEEEEeCCC-
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGH--DMTVWSVEACSKG--LA-LTGSRDTTARLWSLEQ-   80 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~--~~~i~~~~~~~~~--~~-~~~~~d~~i~vw~~~~-   80 (351)
                      .++.++..+|.  |+-+|.++.-| +.+.|+...     ...|  .-.|-...|++..  .+ ++......-.+|++.. 
T Consensus        25 ~~~~a~si~p~--grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   25 GGFNAVSINPS--GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             Ccccceeeccc--cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            56788899999  99999888776 556676655     2222  2345667888765  33 6666677788898853 


Q ss_pred             --CeeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           81 --MYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        81 --~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                        ......+.+|...|+.+-|+|+. ..+++++.|-.+..||+++.. ++.....-......++|+.....+++.+.   
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---  178 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---  178 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---
Confidence              33445667999999999999854 578999999999999998754 34444444455677999985555555555   


Q ss_pred             CCeEEEEEccCC-ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          157 DKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       157 d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      .+.|.+||++.+ .++..+++|...+..+.|.. --..+.+++.||.|+.||................++..-++-|-|+
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            788999999986 56777888888888888876 3356788899999999998765544444445567888888888654


Q ss_pred             E--EEEEeCCCeEEEEeCCC
Q psy519          235 T--LVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       235 ~--l~~~~~dg~i~i~~~~~  252 (351)
                      -  +.---.+..+.+++.++
T Consensus       259 g~~~mp~~G~n~v~~~~c~n  278 (1081)
T KOG0309|consen  259 GYCIMPMVGGNMVPQLRCEN  278 (1081)
T ss_pred             eeEeccccCCeeeeeccccc
Confidence            3  22222233555555443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.17  E-value=2.7e-07  Score=75.67  Aligned_cols=223  Identities=15%  Similarity=0.081  Sum_probs=149.8

Q ss_pred             ceEEeeecCCccccEEEEecCCCc-eEEEecCCc-------------cCCCccceEEEEECCCCcE-EEE-----eCCCc
Q psy519           13 HFIQNSFKPETVEDVLANLESQKN-LQSRYLPYY-------------TSGHDMTVWSVEACSKGLA-LTG-----SRDTT   72 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~-i~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~-~~~-----~~d~~   72 (351)
                      ....++.+|.. ...++.+-.-|+ ..+||..+.             +.+|      -.|++||++ ++.     ...|.
T Consensus         6 RgH~~a~~p~~-~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    6 RGHGVAAHPTR-PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             cccceeeCCCC-CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence            34567778841 555666666554 456676665             3333      469999988 433     23578


Q ss_pred             EEEEeCC-CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC------------------CCcEEEEeCCCCceeEE--e--
Q psy519           73 ARLWSLE-QMYPLRIFVGHKQDVTCARFHPKITYIGTGSY------------------DKAVRLWSITDGASVRV--F--  129 (351)
Q Consensus        73 i~vw~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~--~--  129 (351)
                      |-|||.. +.+.+..+..|.-....+.+.||++.|+++..                  +.++...|..+|+.+..  +  
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999998 67778888888777788999999988877632                  23567778888887766  4  


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCC----CCeEEEEEccCCceeEEec-------cCCCCEEEEEECCCCcEEEEEc-
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSY----DKAVRLWSITDGASVRVFS-------DHVSPVLSIAFSPCGKYLASGG-  197 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~----d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-  197 (351)
                      ..|...|+.+++.++|..++..-....    ---+.+++.  ++.+..+.       .....+-++++++++..+++.+ 
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            337778999999999877665533100    112444442  33233322       3456799999999998776665 


Q ss_pred             CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          198 EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      ..+.+.+||..+++.+....+   ..+..++-.+++ ++++. ..|.+....
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l---~D~cGva~~~~~-f~~ss-G~G~~~~~~  283 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPL---PDACGVAPTDDG-FLVSS-GQGQLIRLS  283 (305)
T ss_pred             CCCEEEEEECCCCCEeecccc---CceeeeeecCCc-eEEeC-CCccEEEcc
Confidence            577899999999998876543   346777777666 55554 345544433

>KOG4714|consensus

Probab=99.17  E-value=4.5e-10  Score=87.41  Aligned_cols=190  Identities=15%  Similarity=0.146  Sum_probs=114.7

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEEC-----------CCCcEEEEeCCCcEEE
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEAC-----------SKGLALTGSRDTTARL   75 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~-----------~~~~~~~~~~d~~i~v   75 (351)
                      +..+.++-+   ..|+++..++.+........       .....++.++++.+           ++...+++..||.+.+
T Consensus        39 ~~~~~~v~~---~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE---YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh---heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence            556666644   45666666666655544333       11122333444432           2335588899999999


Q ss_pred             EeCCCCeee-EEeeCCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE-E
Q psy519           76 WSLEQMYPL-RIFVGHKQDVTCARFHPKITYIGTGSY-----DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY-L  148 (351)
Q Consensus        76 w~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l  148 (351)
                      ++.+.-..+ +.+..-...-.+.++...++.+.++.-     -+..+.|+++..+.+..-+.....|.+++-+|..+. +
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v  195 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV  195 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence            997652111 111111111122233334555544321     234566666544332222223345899999996554 5


Q ss_pred             EEEecCCCCCeEEEEEccCCce-eEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCC
Q psy519          149 ASGGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      ++|+.   ||.+.+||.|+... ...++.|+.++..+-|+| ++..|+++++||.+..||..+
T Consensus       196 ~cgt~---dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  196 CCGTD---DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEecC---CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            55555   99999999998743 344678999999999999 778999999999999999864

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=2.7e-08  Score=79.08  Aligned_cols=190  Identities=16%  Similarity=0.132  Sum_probs=117.4

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCCC-------cEEEEeCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKG-------LALTGSRDT   71 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~-------~~~~~~~d~   71 (351)
                      -..+-..++||||  +.+||.+...|+|+++|+...           ...-...|..+.|.+..       .++.-..+|
T Consensus        42 ~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G  119 (282)
T PF15492_consen   42 PNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG  119 (282)
T ss_pred             CCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence            3445577999999  999999999999999999865           11224567777776543       346667788


Q ss_pred             cEEEEeCCC-----CeeeEEee---CCCCCeEEEEEeCCCCEEEEEeCCCc-----------EEEEeCCCCceeEEeccC
Q psy519           72 TARLWSLEQ-----MYPLRIFV---GHKQDVTCARFHPKITYIGTGSYDKA-----------VRLWSITDGASVRVFSDH  132 (351)
Q Consensus        72 ~i~vw~~~~-----~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~  132 (351)
                      .++-|-+..     .+....+.   .+...|.++.++|..++|++|+....           +.-|.+-++.+...    
T Consensus       120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk----  195 (282)
T PF15492_consen  120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK----  195 (282)
T ss_pred             eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE----
Confidence            888776532     23333332   24678999999999888888765322           22222222211111    


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV  212 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  212 (351)
                            ...+.+...-..      ..+..+|.+-+.+...........|..|..+|||+.|++...+|.|.+|++.+-+.
T Consensus       196 ------~v~~~~~~~~~~------~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  196 ------QVTSSEDDITAS------SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ------EccccCcccccc------ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence                  000111111111      11122333222221111223456799999999999999999999999999988777


Q ss_pred             EEEee
Q psy519          213 ISRFH  217 (351)
Q Consensus       213 ~~~~~  217 (351)
                      ...+.
T Consensus       264 ~~~W~  268 (282)
T PF15492_consen  264 QRSWK  268 (282)
T ss_pred             hcccc
Confidence            66664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.16  E-value=7.9e-08  Score=78.80  Aligned_cols=218  Identities=15%  Similarity=0.086  Sum_probs=138.4

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           70 DTTARLWSLEQMYPLRIFVGHK--QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      +++|..||..+++.+.......  ....+. ..+++..+++++.++.++.||..+|+.+..+.. ...+..... ..+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccc
Confidence            6899999999999988875421  222221 233466777778999999999999998877764 222211112 24555


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEe-ccCC---CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC-
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVF-SDHV---SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-  222 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  222 (351)
                      ++++..   ++.+..+|..+|+.+... ....   ..........++..++++..++.+..+|+++|+.+-........ 
T Consensus        79 v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGTS---DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEET---TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             cccccc---eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            666656   889999999999988874 3221   11122222224778888888999999999999998877653321 


Q ss_pred             --C------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecceeE--EecCCceeeeeeccceeeEEEeeecee
Q psy519          223 --P------VTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCA--AQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       223 --~------v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                        .      +..-....++ .++.++.++.+.-+|+.+++.+-........  ..+.+..+.+...++   .+..++..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~---~l~~~d~~t  231 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDG---RLYALDLKT  231 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTT---EEEEEETTT
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCC---EEEEEECCC
Confidence              1      1122222244 7777777775444499999865433333322  456666666666444   677778888


Q ss_pred             CceEE
Q psy519          293 GPVVV  297 (351)
Q Consensus       293 g~~~~  297 (351)
                      |+..+
T Consensus       232 G~~~W  236 (238)
T PF13360_consen  232 GKVVW  236 (238)
T ss_dssp             TEEEE
T ss_pred             CCEEe
Confidence            87554

...

>KOG0309|consensus

Probab=99.15  E-value=4.2e-10  Score=99.63  Aligned_cols=243  Identities=17%  Similarity=0.221  Sum_probs=168.0

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCc--EEEEeCCCcEEE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGL--ALTGSRDTTARL   75 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~--~~~~~~d~~i~v   75 (351)
                      |.+-.+..|-.+.|||....++-++......-.+|++...        +.+|...|+.+.|+|+..  +++++-|..+..
T Consensus        62 l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~  141 (1081)
T KOG0309|consen   62 LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHA  141 (1081)
T ss_pred             eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccccee
Confidence            3444556777889998744566666666666778988765        789999999999999874  389999999999


Q ss_pred             EeCCCCe-eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEccC-CCEEEEEe
Q psy519           76 WSLEQMY-PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPC-GKYLASGG  152 (351)
Q Consensus        76 w~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  152 (351)
                      ||+.+.. ++..+..-......++|+-....+.+.+....|++||.+.| .++..+++|...+..++|+.- ...+.+.+
T Consensus       142 wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~  221 (1081)
T KOG0309|consen  142 WDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS  221 (1081)
T ss_pred             eeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC
Confidence            9998754 44444444455678999875555556677889999999865 467788889899999998762 34566776


Q ss_pred             cCCCCCeEEEEEccCCcee-EEeccCCCCEEEEEECCCC--cEEEEEcCCCeEEEEEcCC----------CcEEEEeecc
Q psy519          153 TGSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFSPCG--KYLASGGEDGLVLTHELTT----------GRVISRFHLQ  219 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~  219 (351)
                      .   |++|+.||....... ........++..-++-|-|  .++.-.-.+..+.+++.++          .+.++.|. .
T Consensus       222 ~---d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-G  297 (1081)
T KOG0309|consen  222 N---DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-G  297 (1081)
T ss_pred             C---CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-C
Confidence            7   999999998764322 2222345677777777743  3333222233444444332          24566664 5


Q ss_pred             CCCCEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCC
Q psy519          220 EHEPVTSLVWSVTG----------ETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       220 ~~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~~~~~  252 (351)
                      |...|..+.|-..+          -.|++=+.|..+++|-+.+
T Consensus       298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            55666666664422          2588999999999998764

>KOG1275|consensus

Probab=99.13  E-value=2.5e-09  Score=96.99  Aligned_cols=182  Identities=16%  Similarity=0.183  Sum_probs=140.0

Q ss_pred             cEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEc
Q psy519           63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        63 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  142 (351)
                      .++.|+....+..+|+.+.+..+...-....+.-++.  +++.+.+|...|+|.+-|.++.+.+.++..|.+.|.++.. 
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-  225 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-  225 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence            3466777778888999988877766554545655544  5789999999999999999999999999999999987666 


Q ss_pred             cCCCEEEEEecCC------CCCeEEEEEccCCceeEEeccCCCCEEEEEECCC-CcEEEEEcCCCeEEEEE---cCCCcE
Q psy519          143 PCGKYLASGGTGS------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHE---LTTGRV  212 (351)
Q Consensus       143 ~~~~~l~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d---~~~~~~  212 (351)
                       .|+.|++++...      .|..|++||+|..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+-|   +.+...
T Consensus       226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~  303 (1118)
T KOG1275|consen  226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA  303 (1118)
T ss_pred             -cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence             789999987522      2677999999998777666555544 45788884 46788888899999998   333321


Q ss_pred             EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          213 ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       213 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      -..........+.+++++++++.|+.|..+|.|.+|.
T Consensus       304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            1111112334599999999999999999999999997

>KOG1920|consensus

Probab=99.13  E-value=1.7e-07  Score=88.05  Aligned_cols=236  Identities=13%  Similarity=0.104  Sum_probs=153.8

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC----CC-
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL----EQ-   80 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~----~~-   80 (351)
                      ...|.++.|.-+  +.-++.+...|.|.+-|..+.    ...-.+.|.+++|+||+.+ +.....+++.+-.-    -. 
T Consensus        68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEecc--cceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            468999999999  888988999999999988877    3345678999999999988 66666666665432    00 


Q ss_pred             ------------------CeeeEEeeCC---------------------CCCeEEEEEeCCCCEEEEEe-----CCCcEE
Q psy519           81 ------------------MYPLRIFVGH---------------------KQDVTCARFHPKITYIGTGS-----YDKAVR  116 (351)
Q Consensus        81 ------------------~~~~~~~~~~---------------------~~~i~~i~~~~~~~~l~~~~-----~dg~i~  116 (351)
                                        |+....+.+.                     .+.=+.+.|--||.++++..     ....++
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence                              1111112210                     11123588999999998842     237899


Q ss_pred             EEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE----eccCCCCEEEEEECCCCcE
Q psy519          117 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV----FSDHVSPVLSIAFSPCGKY  192 (351)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~  192 (351)
                      +||.+ |..-..-....+.-.+++|-|.|..+++......|+.|.+|. ++|-....    +.....++..++|+.++..
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdi  303 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDI  303 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCc
Confidence            99976 443333333334446799999999999887655577899998 45533332    2333445899999999999


Q ss_pred             EEE---EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q psy519          193 LAS---GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       193 l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~  251 (351)
                      |++   ......|++|-+.+-.-..+....... ..-+.|+|.. ..|..-..+|...++++.
T Consensus       304 LAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~-~~~~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  304 LAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ-KALLMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             eeeeecccccceEEEEEecCeEEEEEEEEeccc-cccccccCCCceeEEEEecCCcEEEEEEE
Confidence            987   445556999998765433222222221 1228888842 234444466666666543

>KOG3914|consensus

Probab=99.13  E-value=9.6e-10  Score=90.69  Aligned_cols=154  Identities=17%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCccC--------CCccceEEEEECCCCcE----EEEeCCCcEEEEeCCCCe
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYYTS--------GHDMTVWSVEACSKGLA----LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~--------~~~~~i~~~~~~~~~~~----~~~~~d~~i~vw~~~~~~   82 (351)
                      ..+..+|.  +++||.+..+....++++.....        .-...-+++.|..+...    ...+....+.+|....+.
T Consensus        66 ~~~~~s~~--~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   66 ALVLTSDS--GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccCCC--ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34567777  88888888877776776655411        11122233334333322    234455566677766654


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +. .+.+|-.-+..++|+||+++|+++..|..|++-....-..+..+ -+|...|..++.-++ ..|++++.   |++++
T Consensus       144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG---D~tlr  218 (390)
T KOG3914|consen  144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG---DKTLR  218 (390)
T ss_pred             cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC---CCcEE
Confidence            43 44589999999999999999999999999999887665555444 569999999999864 45788877   99999


Q ss_pred             EEEccCCceeEEec
Q psy519          162 LWSITDGASVRVFS  175 (351)
Q Consensus       162 i~d~~~~~~~~~~~  175 (351)
                      +||+++++.+..+.
T Consensus       219 ~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  219 LWDITSGKLLDTCD  232 (390)
T ss_pred             EEecccCCcccccc
Confidence            99999999887664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.12  E-value=1.1e-07  Score=83.96  Aligned_cols=252  Identities=12%  Similarity=0.013  Sum_probs=150.9

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEE-EEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC-ARF   99 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~-i~~   99 (351)
                      +..++.++.++.+.-+|..++    ...-...+.+--...++.++.+..++.+.-+|.++|+.+..+......... ..-
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            456777778889999998776    111112222111112566677888999999999999988777532111100 001


Q ss_pred             eC--CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCC-------CeEEEEEcc--CCCEEEEEecCCCCCeEEEEEccCC
Q psy519          100 HP--KITYIGTGSYDKAVRLWSITDGASVRVFSDHVS-------PVLSIAFSP--CGKYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus       100 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      +|  .+..++.++.+|.+..+|..+++.+........       ....+..+|  .+..++.++.   ++.+..+|..++
T Consensus       200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~---~g~l~ald~~tG  276 (394)
T PRK11138        200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY---NGNLVALDLRSG  276 (394)
T ss_pred             CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc---CCeEEEEECCCC
Confidence            12  123566777899999999999887665431100       011111222  3456666666   899999999999


Q ss_pred             ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy519          169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY  248 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  248 (351)
                      +.+-.....  ....+..  .+..++.++.+|.+..+|..+++.+-...........+...  .+..|+.++.+|.+.+.
T Consensus       277 ~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        277 QIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             CEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence            876554321  1112222  46677788889999999999998654332111111222222  25678888999999999


Q ss_pred             eCCCCceeeeeecc--eeEEec--CCceeeeeeccceeeEE
Q psy519          249 GWPSASKIGIGVYP--RCAAQP--VGFEAATLAANSRVRTL  285 (351)
Q Consensus       249 ~~~~~~~~~~~~~~--~~~~s~--~~~~~~~~~~~~~~~~~  285 (351)
                      |..+++.+....+.  .+.-+|  .+..+.+++.++.+..+
T Consensus       351 d~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        351 NREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAI  391 (394)
T ss_pred             ECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEE
Confidence            99999887654442  122222  23355556666655444

>KOG1912|consensus

Probab=99.11  E-value=2e-08  Score=89.75  Aligned_cols=230  Identities=13%  Similarity=0.154  Sum_probs=169.1

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCC------------CEEEEEeCCCcEEEE
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI------------TYIGTGSYDKAVRLW  118 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~------------~~l~~~~~dg~i~i~  118 (351)
                      ..-.++.|+|.|.++-|+. ..|.|-|..+-+.++.+..|...|+.+.|.|..            -.|+++...|.|.+|
T Consensus        16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             ccccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            3366789999998877664 578899999999999999999999999998721            256777788999999


Q ss_pred             eCCCCceeEEeccCCCCeEEEEEcc---CC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC-CCcEE
Q psy519          119 SITDGASVRVFSDHVSPVLSIAFSP---CG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYL  193 (351)
Q Consensus       119 d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  193 (351)
                      |...+..+..+..+..++..++|-+   +. ..|++-..   ...+.+|+..+|+.............++.+.| |.+.+
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~---ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG---SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC---CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence            9999988888888999999999977   23 34554444   78999999999998888776666778899999 66777


Q ss_pred             EEEcCCCeEEEEEcCC-------CcEEEEeeccCCC-------------------------CEEEEEEcCCCCEEEEEeC
Q psy519          194 ASGGEDGLVLTHELTT-------GRVISRFHLQEHE-------------------------PVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~  241 (351)
                      ...+..|.+.+-+.-.       ++..+ +...+..                         -...++|+|.-+-++....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~  250 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF  250 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence            7666677777665421       12221 1111111                         0233577887666666667


Q ss_pred             CCeEEEEeCCCCceeeeeecc-----eeEEecCCce--eeeeeccceeeEE
Q psy519          242 TGTVQFYGWPSASKIGIGVYP-----RCAAQPVGFE--AATLAANSRVRTL  285 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~~~~~-----~~~~s~~~~~--~~~~~~~~~~~~~  285 (351)
                      ...+.++|++-...+...++.     -+.+-|+++.  +.++-.+|....+
T Consensus       251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence            789999999988877764443     4677787764  6777777766544

>KOG1832|consensus

Probab=99.11  E-value=5.6e-11  Score=107.09  Aligned_cols=210  Identities=17%  Similarity=0.258  Sum_probs=156.8

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeC-C-CcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSR-D-TTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~-d-~~i~vw~~   78 (351)
                      .+.|+...+|++||-+  .++|+.|+..|.|+++++..+     ...|..+|+-+.=+.+|.. ++.+. . -...+|++
T Consensus      1097 frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhccccceeeEEeecC--CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            3557789999999999  999999999999999999988     7789999999999989966 44433 2 35789998


Q ss_pred             CC-CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-cc---CCCCeEEEEEccCCCEEEEEec
Q psy519           79 EQ-MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SD---HVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        79 ~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      .+ +...+.|.    .-.++.|+.....-+.|.......+||++++.++.++ .+   ....-.+..|+|+..+++-   
T Consensus      1175 ~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--- 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--- 1247 (1516)
T ss_pred             ccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---
Confidence            64 44444443    3457888876555566666678999999998877663 21   1223367889999888874   


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                         ||  .+||.|..+.++.|......+ .=.|+|+|..++.-++     |||+++-+.++....   -.-..+.|+..|
T Consensus      1248 ---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~---Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS---LDQCAVTFNSTG 1313 (1516)
T ss_pred             ---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcc---ccceEEEeccCc
Confidence               66  689999988888876555333 3369999999988775     899999887765431   123678888888


Q ss_pred             CEEEEE
Q psy519          234 ETLVTG  239 (351)
Q Consensus       234 ~~l~~~  239 (351)
                      ..++..
T Consensus      1314 ~VmYa~ 1319 (1516)
T KOG1832|consen 1314 DVMYAM 1319 (1516)
T ss_pred             cchhhh
Confidence            876543

>KOG0882|consensus

Probab=99.09  E-value=6.6e-09  Score=87.10  Aligned_cols=241  Identities=14%  Similarity=0.120  Sum_probs=171.0

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeC-CCcEEEEeCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSR-DTTARLWSLE   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~-d~~i~vw~~~   79 (351)
                      |+..|+.+..+-   .+++.+++.||.++.|.-...        +..|...|.+++.+-++.+ .+.+. |..++++|++
T Consensus         8 hrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeeh---hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            666777766554   489999999999999987662        6678889999999999988 78777 9999999998


Q ss_pred             CCeeeEEeeCCCCCeEEEEEe-CCC---CEEEE-EeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           80 QMYPLRIFVGHKQDVTCARFH-PKI---TYIGT-GSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~-~~~---~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      +...+..++...-+ ..+.|. ..|   ..+++ .-.++.+.++|-....  ....-.-|..+|.++.++|.+..+++..
T Consensus        85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            76544333211111 122222 122   13333 3457899999976543  2233345889999999999999999988


Q ss_pred             cCCCCCeEEEEEccC------Ccee---------EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          153 TGSYDKAVRLWSITD------GASV---------RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~------~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      .   .|.|.-|....      .+..         ..+........++.|+|++..+.+-+.|..|++++.++++.++.+.
T Consensus       164 ~---~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  164 I---SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             c---cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            7   89999998762      1111         1122234567899999999999999999999999999887555442


Q ss_pred             c--------------------------------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          218 L--------------------------------QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       218 ~--------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .                                .....-..++|...|++|+.|+.= -|++.++.++...+.
T Consensus       241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri  312 (558)
T KOG0882|consen  241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRI  312 (558)
T ss_pred             ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEE
Confidence            1                                001124567888899999988764 488888888877654

>KOG0882|consensus

Probab=99.08  E-value=5e-09  Score=87.83  Aligned_cols=206  Identities=13%  Similarity=0.072  Sum_probs=146.2

Q ss_pred             CccceEEEEECCCCcEEEEeCCCcEEEEeCCC---CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCc
Q psy519           49 HDMTVWSVEACSKGLALTGSRDTTARLWSLEQ---MYPLRIFVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGA  124 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~  124 (351)
                      |...|+.+.-....-.++++.||.++.|.-..   -+.+..+..|-..+.+++.+-++.++.+.+. |..++++|+.+-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            66777776655444449999999999998543   2344556778888999999999999999777 9999999998766


Q ss_pred             eeEEecc--CCCCeEEEEEccCCC--EEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          125 SVRVFSD--HVSPVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       125 ~~~~~~~--~~~~i~~~~~~~~~~--~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      .+..++.  .++.+. ...+|...  .+++...  .++.+.++|-+...  ....-.-|..+|..+.+.|-+..+++...
T Consensus        88 minmiKL~~lPg~a~-wv~skGd~~s~IAVs~~--~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAE-WVTSKGDKISLIAVSLF--KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             hhhhcccccCCCceE-EecCCCCeeeeEEeecc--cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            5433322  222222 22233211  3333322  38899999976543  33344568999999999999999999999


Q ss_pred             CCeEEEEEcCC------CcEEEEee--------ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          199 DGLVLTHELTT------GRVISRFH--------LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       199 dg~i~i~d~~~------~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      .|.|.-|....      .+....++        ........++.|+|++..+.+-+.|..|+++++.+++.++
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            99999998762      11111111        1223467899999999999999999999999999887664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=1.2e-08  Score=81.66  Aligned_cols=231  Identities=17%  Similarity=0.232  Sum_probs=154.4

Q ss_pred             CCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe-----eeEEeeCCC------------CCeEEEEEeCCC--CEEE
Q psy519           48 GHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY-----PLRIFVGHK------------QDVTCARFHPKI--TYIG  107 (351)
Q Consensus        48 ~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~i~~i~~~~~~--~~l~  107 (351)
                      .....|+++.|...|.+ ++|...|.|.++.-+...     ....+++|.            ..|..+.|..++  ..++
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            34577999999999988 888888999999866432     222345553            357788887644  3566


Q ss_pred             EEeCCCcEEEEeCCCCce------------------------------------------eEEe-ccCCCCeEEEEEccC
Q psy519          108 TGSYDKAVRLWSITDGAS------------------------------------------VRVF-SDHVSPVLSIAFSPC  144 (351)
Q Consensus       108 ~~~~dg~i~i~d~~~~~~------------------------------------------~~~~-~~~~~~i~~~~~~~~  144 (351)
                      ..+.|.+|++|.+.....                                          .+.. ..|.-.+.++.++.|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            677899999999864310                                          0011 235667788999999


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCce---eEEeccCC-----CCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcE---
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHV-----SPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRV---  212 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---  212 (351)
                      .+.++++.    |-.|.+|++.-...   +..+++|.     .-|++..|+| ....+.-.+..|.|++-|++....   
T Consensus       184 ~et~lSaD----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         184 KETLLSAD----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             hheeeecc----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence            98888875    78899999865422   22333333     3578889999 446666677789999999984321   


Q ss_pred             ---EEEeec---------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeee--------------------
Q psy519          213 ---ISRFHL---------QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS-KIGIG--------------------  259 (351)
Q Consensus       213 ---~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~--------------------  259 (351)
                         +.....         ..-..|..+.|+++|+++++-+. -++++||++..+ ++.+.                    
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence               111100         11146888999999999988654 589999998654 23321                    


Q ss_pred             ecceeEEecCCceeeeeeccceee
Q psy519          260 VYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       260 ~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      .--.+.||-+...+.+++......
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfg  362 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFG  362 (460)
T ss_pred             eeEEEEecCCccccccccccccee
Confidence            112467777777766666655443

>KOG2695|consensus

Probab=99.07  E-value=8.1e-10  Score=89.41  Aligned_cols=161  Identities=14%  Similarity=0.154  Sum_probs=123.0

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----ceeEEeccCCCCeEEE
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-----ASVRVFSDHVSPVLSI  139 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~  139 (351)
                      ++.+.+..+-+-+++++.. +.|. ....|.++.|...++++..|..+|.|..+|++.+     .+...+ -|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            6667778888889888753 3343 5678999999988899999999999999999875     233344 388999998


Q ss_pred             EEcc-CCCEEEEEecCCCCCeEEEEEccCCce---eEEeccCCCCEEE--EEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          140 AFSP-CGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLS--IAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       140 ~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      ..-. ++++|++.+.   +|.|++||+|--++   +.++.+|...-..  +-..+....+++++.|...+||.++.+..+
T Consensus       305 q~Lq~s~q~LmaS~M---~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  305 QILQFSQQKLMASDM---TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhccccceEeeccC---cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            8776 7888888888   99999999997666   8888888654332  334556678888999999999999999999


Q ss_pred             EEeeccCC---CCEEEEEEcC
Q psy519          214 SRFHLQEH---EPVTSLVWSV  231 (351)
Q Consensus       214 ~~~~~~~~---~~v~~~~~~~  231 (351)
                      .++..+..   ..+.+++|..
T Consensus       382 ~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eccCCCCccccccccceehhc
Confidence            88764332   2345555543

>KOG2695|consensus

Probab=99.06  E-value=1.1e-09  Score=88.66  Aligned_cols=167  Identities=11%  Similarity=0.083  Sum_probs=125.4

Q ss_pred             EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-----ceeEEeccCCCCE
Q psy519          107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-----ASVRVFSDHVSPV  181 (351)
Q Consensus       107 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~i  181 (351)
                      ++.+.+-.+-+-|+.++-. +.+. ..+.|.++.|...++++..|+.   +|.|..+|+|.+     .+...+ -|...|
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRL-YHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence            4455677788889887643 3333 5678899999998999999999   999999999875     233333 478888


Q ss_pred             EEEEECC-CCcEEEEEcCCCeEEEEEcCCCcE---EEEeeccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          182 LSIAFSP-CGKYLASGGEDGLVLTHELTTGRV---ISRFHLQEH-EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       182 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +++..-. ++.+|++.+.+|.|++||++--+.   +..++.+.+ ....-+...+....+++++.|-..+||.+..+..+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            8887766 788999999999999999987666   666653222 23334455667778888999999999999999999


Q ss_pred             eeeecceeEEecCCceeeeeecc
Q psy519          257 GIGVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       257 ~~~~~~~~~~s~~~~~~~~~~~~  279 (351)
                      .+.+.+..+..-|...++.....
T Consensus       382 ~tipf~~s~~e~d~~sv~~~sr~  404 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFDSRL  404 (425)
T ss_pred             eccCCCCccccccccceehhccc
Confidence            98887776666666655444333

>KOG3621|consensus

Probab=98.98  E-value=3e-07  Score=81.69  Aligned_cols=269  Identities=13%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      ++..|.--+++..  +++++.|++.|.+++|+...+      ..+..+.+..+..+++..+ +.|+..|.|.|+-++...
T Consensus        32 ~~~~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            4455555677777  999999999999999998877      2234556666778888888 888899999999887643


Q ss_pred             eeE-----E-eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc----eeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           83 PLR-----I-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        83 ~~~-----~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      +..     . -+.|...|++++|++++..+++|...|.|..-.+.+..    ..+.+....+.|..+.+. ++.+|++..
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl  188 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL  188 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence            221     1 12478899999999999999999999999998887621    223333356777777765 333444332


Q ss_pred             cCCCCCeEEEEEccCCceeEEec-cCCC-CEEEEEECCC----C-cEEEEEcCCCeEEEEEcC-CCcEEEEeeccCC---
Q psy519          153 TGSYDKAVRLWSITDGASVRVFS-DHVS-PVLSIAFSPC----G-KYLASGGEDGLVLTHELT-TGRVISRFHLQEH---  221 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~-~~~~-~i~~~~~~~~----~-~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~---  221 (351)
                      .     ...+++...++..+.-+ ...+ .-...+|-|.    . .+|+++ .-| .++|... .|..+++..+...   
T Consensus       189 ~-----r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG-~RlWead~~G~V~~Thqfk~ala~  261 (726)
T KOG3621|consen  189 T-----RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPG-LRLWEADFAGEVIKTHQFKDALAR  261 (726)
T ss_pred             h-----hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCC-CceEEeecceeEEEeeehhhhhcc
Confidence            2     44555655433211111 1111 1234455553    2 344444 433 5677654 2333333221100   


Q ss_pred             --------------------CCEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeee-ec-ceeEEecCCceeee
Q psy519          222 --------------------EPVTSLVWSV----TGETLVTGSLTGTVQFYGWPSASKIGIG-VY-PRCAAQPVGFEAAT  275 (351)
Q Consensus       222 --------------------~~v~~~~~~~----~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~-~~~~~s~~~~~~~~  275 (351)
                                          ..-..+.|..    .+..+++-++-| |+|+|.++.+.+.-. .. --+.++..+..+.+
T Consensus       262 ~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFv  340 (726)
T KOG3621|consen  262 PPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFV  340 (726)
T ss_pred             CCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCceEEE
Confidence                                0111111111    122233322333 788887776655432 22 23456677777777


Q ss_pred             eeccceeeEEEeee
Q psy519          276 LAANSRVRTLREMH  289 (351)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (351)
                      ...++.++.+.+..
T Consensus       341 L~~d~~l~~~sv~s  354 (726)
T KOG3621|consen  341 LNLDRGLKVESVAS  354 (726)
T ss_pred             EecCCceeEEEeeh
Confidence            77777666666544

>KOG2114|consensus

Probab=98.94  E-value=4.7e-07  Score=82.17  Aligned_cols=198  Identities=12%  Similarity=0.110  Sum_probs=133.2

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCC-cE-EEEeCCC-----cEEEEeCCCC----
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKG-LA-LTGSRDT-----TARLWSLEQM----   81 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~-~~-~~~~~d~-----~i~vw~~~~~----   81 (351)
                      -+|++.  +..+|.|+.+|.|.+++-.-.    +..+...+-..-|.-++ .+ ++.+.|+     .++||+++..    
T Consensus        29 sc~~s~--~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSS--TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCC--CceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            457777  899999999999988876544    45555553333344444 44 6655554     4999998643    


Q ss_pred             --eeeE--EeeC-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC----CCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           82 --YPLR--IFVG-----HKQDVTCARFHPKITYIGTGSYDKAVRLWSIT----DGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        82 --~~~~--~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                        +++.  .+..     ...++.+++.+.+-+.+|+|-.+|.|..+.-+    .+...........+|+.+++..++..+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              2221  1112     24578899999999999999999999988532    122222233456899999999988873


Q ss_pred             EEEecCCCCCeEEEEEccCCce-eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          149 ASGGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                      +.+.+   ...|.+|.+....+ ...+..|..++.|..+++....+++++. ..+.+||.........+...+
T Consensus       187 lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  187 LFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             EEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence            33333   67899999974442 4446778888999999975554665543 469999987666666665333

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.90  E-value=3.2e-06  Score=73.44  Aligned_cols=256  Identities=13%  Similarity=0.108  Sum_probs=148.5

Q ss_pred             cCCccccEEEEec---------CCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy519           20 KPETVEDVLANLE---------SQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        20 sp~~~~~~l~~~~---------~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~   86 (351)
                      |||  +++++...         ..+.+.++|+.+.    +......+....|+|+|+.++--.++.|.+++..+++..+.
T Consensus         1 S~d--~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPD--GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TT--SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES
T ss_pred             CCC--CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEe
Confidence            678  88777632         3467889999887    32335678889999999997777789999999887754432


Q ss_pred             eeCC-----------------CCCeEEEEEeCCCCEEEEEeCCC------------------------------------
Q psy519           87 FVGH-----------------KQDVTCARFHPKITYIGTGSYDK------------------------------------  113 (351)
Q Consensus        87 ~~~~-----------------~~~i~~i~~~~~~~~l~~~~~dg------------------------------------  113 (351)
                      -...                 -..-..+-|+||+++|+....|.                                    
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2211                 11234688999999988653221                                    


Q ss_pred             cEEEEeCCCCceeEE--e---ccCCCCeEEEEEccCCCEEEEEec--CCCCCeEEEEEccCCceeEEecc-CCCC---EE
Q psy519          114 AVRLWSITDGASVRV--F---SDHVSPVLSIAFSPCGKYLASGGT--GSYDKAVRLWSITDGASVRVFSD-HVSP---VL  182 (351)
Q Consensus       114 ~i~i~d~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l~~~~~--~~~d~~i~i~d~~~~~~~~~~~~-~~~~---i~  182 (351)
                      .+.++|+.+++....  .   ......+..+.|.++++.++..-.  ......+.++|..++........ ....   ..
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            244566655543221  1   123456788999999884444332  22234577778877654333321 1121   22


Q ss_pred             EEEEC-CCCc-EEEEEcCCCe--EEEEEcCCCcEEEEeeccCCCCEEE-EEEcCCCCEEE-EEeCC----CeEEEEeCC-
Q psy519          183 SIAFS-PCGK-YLASGGEDGL--VLTHELTTGRVISRFHLQEHEPVTS-LVWSVTGETLV-TGSLT----GTVQFYGWP-  251 (351)
Q Consensus       183 ~~~~~-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~d----g~i~i~~~~-  251 (351)
                      ...|. +++. ++.....+|.  |.+++...+. ...+. .+.-.|.. +.|+++++.|+ ++..+    ..+..-++. 
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~  316 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS  316 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence            44554 5554 5555556664  5566665554 33343 34456744 77888877664 44442    245555666 


Q ss_pred             CCceeee---eecc-eeEEecCCceeeeeecc
Q psy519          252 SASKIGI---GVYP-RCAAQPVGFEAATLAAN  279 (351)
Q Consensus       252 ~~~~~~~---~~~~-~~~~s~~~~~~~~~~~~  279 (351)
                      .++....   ...+ ...|||+|++++...++
T Consensus       317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  317 GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             TTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            4454443   3334 78999999887766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.90  E-value=2.6e-06  Score=75.30  Aligned_cols=259  Identities=11%  Similarity=0.030  Sum_probs=151.1

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCCcc--------ceE-EEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGHDM--------TVW-SVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~~~--------~i~-~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..+++++.++.+.-+|..++       ......        .+. .+.. .++.++.++.++.+.-+|.++|+.+....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            566777777788888887655       111000        000 0111 24566778889999999999999887765


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEE-EEEcc--CCCEEEEEecCCCCCeEEEEEc
Q psy519           89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS-IAFSP--CGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                      ...........  .+..++.+..++.+.-+|..+|+.+............ ..-+|  .+..++.+..   ++.+..+|.
T Consensus       148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~---~g~v~a~d~  222 (394)
T PRK11138        148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD---NGRVSAVLM  222 (394)
T ss_pred             CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC---CCEEEEEEc
Confidence            43321111122  2346667788999999999999988776532111100 00112  2334566666   899999999


Q ss_pred             cCCceeEEeccCCC-------CEEEEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          166 TDGASVRVFSDHVS-------PVLSIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       166 ~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      .+++.+........       ....+.-+|  .+..+++++.+|.+..+|+.+|+.+-+.....   ...+..  .+..+
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~--~~~~v  297 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAV--DGGRI  297 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEE--ECCEE
Confidence            99876655431110       011112233  34566777788999999999998775543221   112222  46678


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeee-c-ceeEEec--CCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          237 VTGSLTGTVQFYGWPSASKIGIGV-Y-PRCAAQP--VGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~~~-~-~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                      +.++.+|.+..+|..+++.+-... . ....-+|  .+..+.++..++.   +...+..+|+...
T Consensus       298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~---l~~ld~~tG~~~~  359 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGY---LHWINREDGRFVA  359 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCE---EEEEECCCCCEEE
Confidence            888889999999999887653211 1 1111112  2344555555553   4445666676443

>KOG1832|consensus

Probab=98.85  E-value=1.8e-09  Score=97.65  Aligned_cols=220  Identities=16%  Similarity=0.203  Sum_probs=154.6

Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +..+.+..|....+|++|+-+.++|+.|+..|.|++|++.+|........|.++|+-+.-+.+|..+++.+.. ...-..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~-S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS-SSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc-cCchHH
Confidence            3445667788899999999999999999999999999999999999999999999999999999988877651 133578


Q ss_pred             EEEccC-CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC---CCCEEEEEEcCCCCEEE
Q psy519          162 LWSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE---HEPVTSLVWSVTGETLV  237 (351)
Q Consensus       162 i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~  237 (351)
                      +|++.+ +...+.+..    -.++.|+.....-+.|+......+||+.++..+.++....   ...-+...|+|+..+++
T Consensus      1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            999865 344444433    3578888765556667666778999999998776642111   12336788999988775


Q ss_pred             EEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEeeEEEEecCCceeec
Q psy519          238 TGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEA  313 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  313 (351)
                      -   ||  .+||++..+.++.    .....-.|+|.|..++.-+.--..+++++.+    ++-.+..|.+.|...|....
T Consensus      1247 n---dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh----~VP~Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLH----SVPSLDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             e---Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHh----cCccccceEEEeccCccchh
Confidence            3   44  5799998877654    2223457889888766554433344444332    12233345577777665443


Q ss_pred             cE
Q psy519          314 NL  315 (351)
Q Consensus       314 ~~  315 (351)
                      ..
T Consensus      1318 a~ 1319 (1516)
T KOG1832|consen 1318 AM 1319 (1516)
T ss_pred             hh
Confidence            33

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.8e-08  Score=56.72  Aligned_cols=39  Identities=26%  Similarity=0.605  Sum_probs=36.9

Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS  119 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  119 (351)
                      ++++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617|consensus

Probab=98.82  E-value=4.3e-07  Score=82.38  Aligned_cols=103  Identities=12%  Similarity=0.037  Sum_probs=82.7

Q ss_pred             eeecCCccccEEEEec----CCCceEEEecCCccCC---CccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee
Q psy519           17 NSFKPETVEDVLANLE----SQKNLQSRYLPYYTSG---HDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~----~~~~i~i~~~~~~~~~---~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      ..|+|.  ..++|+++    +.|+|.||--......   ..-.+++++|+|...+ +.|-.-|.+.+|...+.+.-....
T Consensus        21 ~SWHPs--ePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPS--EPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCC--CceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            689999  88888775    4578888854433111   1234567999999866 888889999999998877666667


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy519           89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT  121 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  121 (351)
                      .|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            899999999999999999999999999999875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.80  E-value=9.5e-06  Score=73.02  Aligned_cols=215  Identities=14%  Similarity=0.040  Sum_probs=138.2

Q ss_pred             ECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeEEecc
Q psy519           58 ACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD----KAVRLWSITDGASVRVFSD  131 (351)
Q Consensus        58 ~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~  131 (351)
                      +.|||+.  .+.-..+.+.+.|.++.+....+.-.. ....++++|+++++++.+.+    .++..-+..+...+..+.-
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            3456654  344456778888988887776665333 44678899999999888642    2233333222211111110


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC-----CceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEE
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD-----GASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTH  205 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  205 (351)
                      .  .+  -++.++|++...+     ++.|.+.|.++     .+.+..+. -......+.++|||+++++++. +..+.++
T Consensus       279 ~--~i--ea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        279 A--RI--EEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             H--HH--HHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence            0  00  1334577776652     67899999988     34455443 3445678999999999887765 8899999


Q ss_pred             EcCCCcE------------EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------Cceeeeeec--
Q psy519          206 ELTTGRV------------ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS----------ASKIGIGVY--  261 (351)
Q Consensus       206 d~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~----------~~~~~~~~~--  261 (351)
                      |+.+.+.            ..+..+  .......+|+++|....+..-|.+|..|++..          ...+....+  
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y  426 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY  426 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence            9987552            333332  34567789999999888888899999999876          122221111  


Q ss_pred             --------ceeEEecCCceeeeeeccceeeEE
Q psy519          262 --------PRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       262 --------~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                              ..-.-.|+|++++++.--+.++.+
T Consensus       427 ~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl  458 (635)
T PRK02888        427 QPGHNHASMGETKEADGKWLVSLNKFSKDRFL  458 (635)
T ss_pred             ccceeeecCCCcCCCCCCEEEEcccccccccc
Confidence                    112347899999888887777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.80  E-value=2.3e-06  Score=75.52  Aligned_cols=219  Identities=11%  Similarity=-0.006  Sum_probs=126.4

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCccCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCC
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ   92 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~   92 (351)
                      ....+.++|+  |++++. ..+|...++..........+.-....|.+.+++++-..+++|.++.--+.+....++.. .
T Consensus        34 ~p~~ls~npn--gr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~  109 (443)
T PF04053_consen   34 YPQSLSHNPN--GRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP-F  109 (443)
T ss_dssp             --SEEEE-TT--SSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S-S
T ss_pred             CCeeEEECCC--CCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC-c
Confidence            4578999999  999888 46788888885444334456667789999889988888999999732222322233222 2


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC----
Q psy519           93 DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG----  168 (351)
Q Consensus        93 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~----  168 (351)
                      .+..+-.   |.+|...+. +.|.+||+.+++.++.+.-  .+|..+.|+++|++++..+    +..+.+++....    
T Consensus       110 ~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t----~~~i~il~~~~~~~~~  179 (443)
T PF04053_consen  110 SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVT----KDSIYILKYNLEAVAA  179 (443)
T ss_dssp             -EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE-HHHHHH
T ss_pred             ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEe----CCeEEEEEecchhccc
Confidence            3444322   777777664 4899999999999999863  2489999999999999887    567787765332    


Q ss_pred             -------ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          169 -------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       169 -------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                             .....+......|.+.+|..+  .++-.+.. +++.  +.+|+.....  .-..++.=+.+.++.+.+.....
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~--~ld~~~yllgy~~~~~~ly~~Dr  252 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA--HLDKPLYLLGYLPKENRLYLIDR  252 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE--E-SS--EEEEEETTTTEEEEE-T
T ss_pred             ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE--EcCCceEEEEEEccCCEEEEEEC
Confidence                   123333332567888999865  44444444 7775  4455533322  22456777788887788888888


Q ss_pred             CCeEEEEeCCC
Q psy519          242 TGTVQFYGWPS  252 (351)
Q Consensus       242 dg~i~i~~~~~  252 (351)
                      |+.+..+.++.
T Consensus       253 ~~~v~~~~ld~  263 (443)
T PF04053_consen  253 DGNVISYELDL  263 (443)
T ss_dssp             T--EEEEE--H
T ss_pred             CCCEEEEEECH
Confidence            88888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.80  E-value=1.3e-06  Score=76.81  Aligned_cols=205  Identities=17%  Similarity=0.178  Sum_probs=132.7

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe---CC-CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS---YD-KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (351)
                      ..+.+-|.+ +.....+......+..-+|+|++..++...   .. ..++++|+.+++...... ..+.-...+|+|||+
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            334444544 444555555556677789999988765442   22 469999999887666554 334445688999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eEEEEEcCCCcEEEEeeccCCCC
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      .|+.+......-.|+++|+..+...+ +....+.-..-.|+|||+.++-.+. .|  .|.++++..+.. ..+...... 
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-  327 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-  327 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-
Confidence            99888765445568888988776433 5444444457789999998876553 44  466777765544 444333322 


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCceeee----eecceeEEecCCceeeeeeccc
Q psy519          224 VTSLVWSVTGETLVTGSL-TGT--VQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~-dg~--i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      -..-.|+|||++|+..+. +|.  |.+.|+.++.....    .......+.|+|..+......+
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            237889999999988764 344  77777766653322    2233567888888776655544

>KOG1275|consensus

Probab=98.78  E-value=2.5e-07  Score=84.42  Aligned_cols=175  Identities=17%  Similarity=0.145  Sum_probs=128.3

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCAR   98 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~   98 (351)
                      +..++.|+-...+..+|+.+.     ..-....|.-|..  ++++ .+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            445666666667777888776     1122223555553  4555 8899999999999999999999999999998765


Q ss_pred             EeCCCCEEEEEeC---------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccC-CCEEEEEecCCCCCeEEEEE---c
Q psy519           99 FHPKITYIGTGSY---------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWS---I  165 (351)
Q Consensus        99 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d---~  165 (351)
                      .  .|+.|++++.         |.-|++||++..+.+.-+.-+.++ .-+.|.|. ...+++++.   .|...+-|   +
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~---sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ---SGQFQFVDTATL  298 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec---ccceeecccccc
Confidence            5  5889998876         456899999987766555444444 44677874 345667766   89999999   4


Q ss_pred             cCC-ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          166 TDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       166 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      .+. ..+..+......+..+++++++..++.|..+|.|.+|--
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            443 223334444556999999999999999999999999973

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.75  E-value=3.5e-08  Score=55.47  Aligned_cols=38  Identities=45%  Similarity=0.722  Sum_probs=36.0

Q ss_pred             ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      +++..+.+|..+|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066|consensus

Probab=98.74  E-value=4.6e-07  Score=81.64  Aligned_cols=177  Identities=14%  Similarity=0.112  Sum_probs=128.8

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      ..+.|++++    +++|+.|+-+|.+++++.+..   ...|+..      ..+|.+ ++|+.||+|.|-.+-+.+....+
T Consensus        40 D~is~~av~----~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH----DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh----cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            345667777    789999999999999998765   2223322      457887 99999999999999888776666


Q ss_pred             eCCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEeCCC--CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           88 VGHKQDVTCARFHPK-----ITYIGTGSYDKAVRLWSITD--GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      . ...++.+++++|+     .+.+++|+..| +.++.-+-  .+....+....++|.++.|  .|+++|-+.    |--|
T Consensus       110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan----d~Gv  181 (846)
T KOG2066|consen  110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN----DDGV  181 (846)
T ss_pred             e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec----CCCc
Confidence            4 4568999999997     56889999888 77776431  1111235567799999999  588999886    6679


Q ss_pred             EEEEccCCceeEEeccCCCCE------EEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          161 RLWSITDGASVRVFSDHVSPV------LSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      ++||+.+++.+..++.....+      ..+.|.++ ..|+.|=. .+|++..++
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWG-DSVKICSIK  233 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecC-CeEEEEEEe
Confidence            999999888777665433322      35677754 45555543 468888877

>KOG1920|consensus

Probab=98.74  E-value=1.1e-05  Score=76.40  Aligned_cols=236  Identities=11%  Similarity=0.037  Sum_probs=146.4

Q ss_pred             CccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           49 HDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      ....|.++.|..+..- +.+..+|.|.+-|.++... .....-...|.+++|+||...++..+..+++.+-. .+..++.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~  144 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA  144 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence            3468999999888755 8888899999999887643 23333467899999999999999988877775543 3333222


Q ss_pred             Eecc-----CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce-eEEeccCCCCEEEEEECCCCcEEEEEc----
Q psy519          128 VFSD-----HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSPCGKYLASGG----  197 (351)
Q Consensus       128 ~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~----  197 (351)
                      ...-     ..+....+-|-.....+ -|+    .|.....+...... ......+.. =..+.|--||.++++..    
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs----~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQF-RGS----EGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             ccccccccccccccceecccccceee-ecc----hhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEecc
Confidence            1111     11222234443222121 111    22222222111111 011111222 24689999999999842    


Q ss_pred             -CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCc--------eeeeeecceeE
Q psy519          198 -EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS---LTGTVQFYGWPSAS--------KIGIGVYPRCA  265 (351)
Q Consensus       198 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~~~~~~~--------~~~~~~~~~~~  265 (351)
                       ....|++||.. |.. .....+....-.+++|-|.|.++++-.   .|+.|.+|.-+...        +.....+..++
T Consensus       219 ~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             CCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence             23789999976 432 222223334557899999999998843   35679999854322        12234588999


Q ss_pred             EecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          266 AQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       266 ~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      |+.++..|++..+...-..+++|.....|
T Consensus       297 Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ecCCCCceeeeecccccceEEEEEecCeE
Confidence            99999999998888877788999865555

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.72  E-value=1.5e-05  Score=69.23  Aligned_cols=244  Identities=14%  Similarity=0.117  Sum_probs=136.2

Q ss_pred             CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC----------------
Q psy519           69 RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH----------------  132 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------  132 (351)
                      ..+.+.++|+++++...... ....+....|+|+|+.++... ++.|++.+..+++..+.-...                
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             cceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            34779999999976554333 356788899999999998876 688999998777544322111                


Q ss_pred             -CCCeEEEEEccCCCEEEEEecC-------------------------------CCCC--eEEEEEccCCceeEE--e--
Q psy519          133 -VSPVLSIAFSPCGKYLASGGTG-------------------------------SYDK--AVRLWSITDGASVRV--F--  174 (351)
Q Consensus       133 -~~~i~~~~~~~~~~~l~~~~~~-------------------------------~~d~--~i~i~d~~~~~~~~~--~--  174 (351)
                       -+.-..+-||||+++|+.....                               ..+.  .+.++|+.+++....  .  
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~  178 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS  178 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred             ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence             1123568899999999877431                               0011  244456655543211  1  


Q ss_pred             -ccCCCCEEEEEECCCCcEEEEE--cCC---CeEEEEEcCCCcEEEEeeccCCC---CEEEEEEc-CCCC-EEEEEeCCC
Q psy519          175 -SDHVSPVLSIAFSPCGKYLASG--GED---GLVLTHELTTGRVISRFHLQEHE---PVTSLVWS-VTGE-TLVTGSLTG  243 (351)
Q Consensus       175 -~~~~~~i~~~~~~~~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~-~~~~-~l~~~~~dg  243 (351)
                       ......+..+.|.++++.|+..  ..+   ..+.++|..++............   .-....|. +++. ++.....+|
T Consensus       179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G  258 (353)
T PF00930_consen  179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG  258 (353)
T ss_dssp             HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred             cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence             1234457889999998844433  222   24677788776554433323332   22355554 6555 444455666


Q ss_pred             e--EEEEeCCCCceeee----eec-ceeEEecCCceeeeeeccce--eeEEEeeece-eCceEEEee-----EEEEecCC
Q psy519          244 T--VQFYGWPSASKIGI----GVY-PRCAAQPVGFEAATLAANSR--VRTLREMHEI-VGPVVVVES-----FIVEIRPD  308 (351)
Q Consensus       244 ~--i~i~~~~~~~~~~~----~~~-~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~~~~~~-----~~~~~~~~  308 (351)
                      .  |.+++...+.....    ..+ .-+.+.+++..+...+....  .+.+...+.. .|....+.+     ....|+|+
T Consensus       259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd  338 (353)
T PF00930_consen  259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD  338 (353)
T ss_dssp             SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred             CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence            4  55666666654332    222 24677888777665555433  2222222333 333333332     14678888


Q ss_pred             ceeecc
Q psy519          309 KWYEAN  314 (351)
Q Consensus       309 ~~~~~~  314 (351)
                      +.|...
T Consensus       339 g~y~v~  344 (353)
T PF00930_consen  339 GKYYVD  344 (353)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066|consensus

Probab=98.72  E-value=1.7e-06  Score=78.12  Aligned_cols=182  Identities=20%  Similarity=0.252  Sum_probs=131.7

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  130 (351)
                      ..+.|++++ +.-++.|..+|.+++++.+.. . .....|...      ..+|.++++++.||.|.+..+-+.+...++.
T Consensus        40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             hHHHHHHhh-cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            345555553 223488999999999997643 2 233344443      5689999999999999999998888777665


Q ss_pred             cCCCCeEEEEEccC-----CCEEEEEecCCCCCeEEEEEccC--CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          131 DHVSPVLSIAFSPC-----GKYLASGGTGSYDKAVRLWSITD--GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       131 ~~~~~i~~~~~~~~-----~~~l~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                       ...++.+++++|+     .+.+++|+.   .| +.++.-+-  .+....+....++|.++.|.  |+++|-++.+| |+
T Consensus       111 -f~rpiksial~Pd~~~~~sk~fv~GG~---ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  111 -FKRPIKSIALHPDFSRQQSKQFVSGGM---AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             -cCCcceeEEeccchhhhhhhheeecCc---ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence             5688999999997     567888887   66 77776321  12222455678899999996  88999998877 89


Q ss_pred             EEEcCCCcEEEEeeccCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          204 THELTTGRVISRFHLQEHE-----PVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +||+..++.+..+..++..     -...+.|.++.+ |+.| ...+|+|..++
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            9999999888877644431     245678876544 5554 44588888887

>KOG1645|consensus

Probab=98.71  E-value=1.2e-06  Score=72.81  Aligned_cols=240  Identities=13%  Similarity=0.080  Sum_probs=141.7

Q ss_pred             CcCCCCccceEEeeecCCcccc-EEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCc-E-EEEeCCCcEEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGL-A-LTGSRDTTARLW   76 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~-~-~~~~~d~~i~vw   76 (351)
                      .+..++...|..++|||.  .. ++..++.+..|.|.|+++.     ...+ ..+++++|.-+.. + ..|..+|.|.||
T Consensus       187 q~lp~~g~~IrdlafSp~--~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPF--NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             hcccccchhhhhhccCcc--ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            456778899999999998  65 7888889999999999988     4444 8899999998774 3 778889999999


Q ss_pred             eCCCCee-eEEeeC--CCCCeEEEEE------eCCCCEEEEEeCCCcEEEEeCCC--CceeEEec-cCCCCeEEEEEccC
Q psy519           77 SLEQMYP-LRIFVG--HKQDVTCARF------HPKITYIGTGSYDKAVRLWSITD--GASVRVFS-DHVSPVLSIAFSPC  144 (351)
Q Consensus        77 ~~~~~~~-~~~~~~--~~~~i~~i~~------~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~-~~~~~i~~~~~~~~  144 (351)
                      |+...+- +..+.+  ...+|..++.      .+.+.+++....+  +..|.+.-  +.....+. +..+...++++.+.
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~  341 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV  341 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence            9975431 222211  1234444333      2234455444432  44565432  22222221 23566677777776


Q ss_pred             CCEEEEEecCCCC----CeEEE-EEccCCceeEEec-cC-CCC---E--EEEEE-CCCCcEEE-EEcCCCeEEEEEcCCC
Q psy519          145 GKYLASGGTGSYD----KAVRL-WSITDGASVRVFS-DH-VSP---V--LSIAF-SPCGKYLA-SGGEDGLVLTHELTTG  210 (351)
Q Consensus       145 ~~~l~~~~~~~~d----~~i~i-~d~~~~~~~~~~~-~~-~~~---i--~~~~~-~~~~~~l~-~~~~dg~i~i~d~~~~  210 (351)
                      .+.++.......+    ..+-. -|-++|..+-..+ .+ ..+   .  ...-+ .++.++++ .+...+.+.+||..+.
T Consensus       342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            6666665441000    01111 1222332221111 11 000   0  11122 33445554 4455678999999999


Q ss_pred             cEEEEeeccCCCCEEEEEEcC-C-CCEEEEEeCCCeEEEEeCCC
Q psy519          211 RVISRFHLQEHEPVTSLVWSV-T-GETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~-~-~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +.++.+..  ..++..++... + +.+|++-. |..++||..++
T Consensus       422 evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  422 EVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             heeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            99988754  46788887654 2 44666664 56889987654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.70  E-value=8.6e-05  Score=60.24  Aligned_cols=196  Identities=17%  Similarity=0.199  Sum_probs=118.1

Q ss_pred             CCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEeeCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           47 SGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFVGH-KQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      .+-...+..++|+|+. .+ ++....+.|..++.+ |+.++.+.-. ....-+|++..++.++++.-.++.+.++++...
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            3445569999999975 45 777788889888864 7777776433 356788999888877777666899999998432


Q ss_pred             c------eeEEe-----ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC---CceeEEe--------ccCCCCE
Q psy519          124 A------SVRVF-----SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD---GASVRVF--------SDHVSPV  181 (351)
Q Consensus       124 ~------~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~---~~~~~~~--------~~~~~~i  181 (351)
                      .      ....+     ..+...+-.++|+|.++.|+++-.   ..-..+|.++.   ...+...        ......+
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccccceeccc
Confidence            1      11112     124456899999999888888766   66666776654   2211111        1233457


Q ss_pred             EEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--------CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy519          182 LSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--------EPVTSLVWSVTGETLVTGSLTGTVQFY  248 (351)
Q Consensus       182 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~  248 (351)
                      .++.++| .+.+++.+..+..+..+| .+|+.+..+.+...        .+...++|.++|++.++ ++-+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            8999999 456777777888999999 57887776665442        36889999999975544 466666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.65  E-value=0.00012  Score=65.47  Aligned_cols=252  Identities=15%  Similarity=0.087  Sum_probs=141.9

Q ss_pred             CCCCcCCCC-ccceEEeeecCCccccEEEEec-CC----CceEEEecCCc--cCCC-cc-ceEEEEECCCCcE-EEEeC-
Q psy519            2 DLSHLNHGD-HKHFIQNSFKPETVEDVLANLE-SQ----KNLQSRYLPYY--TSGH-DM-TVWSVEACSKGLA-LTGSR-   69 (351)
Q Consensus         2 ~~~~~~~~~-~~~v~~~~~sp~~~~~~l~~~~-~~----~~i~i~~~~~~--~~~~-~~-~i~~~~~~~~~~~-~~~~~-   69 (351)
                      |+..+..++ ...+....+||+  |+++|.+- ..    ..++++|+.++  .... .. .-..+.|.+++.. +.... 
T Consensus       113 D~n~l~~~~~~~~~~~~~~Spd--g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~  190 (414)
T PF02897_consen  113 DPNELAKDGGYVSLGGFSVSPD--GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFD  190 (414)
T ss_dssp             EGGGGSTTSS-EEEEEEEETTT--SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECS
T ss_pred             cchHhhccCceEEeeeeeECCC--CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeC
Confidence            344555555 344446899999  99998652 23    35999999887  1111 11 1223899999765 33322 


Q ss_pred             ----------CCcEEEEeCCCCeee--EEeeCCCCC--eEEEEEeCCCCEEEEEeCC----CcEEEEeCCCC----ceeE
Q psy519           70 ----------DTTARLWSLEQMYPL--RIFVGHKQD--VTCARFHPKITYIGTGSYD----KAVRLWSITDG----ASVR  127 (351)
Q Consensus        70 ----------d~~i~vw~~~~~~~~--~~~~~~~~~--i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~----~~~~  127 (351)
                                ...|+.|.+.+....  ..+......  ...+..++|+++++.....    ..+++.|+..+    ....
T Consensus       191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~  270 (414)
T PF02897_consen  191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK  270 (414)
T ss_dssp             TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred             cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence                      234788888766432  344443333  5678889999988754332    45888888774    2333


Q ss_pred             EeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce---eEEeccCCC--CEEEEEECCCCcEEE-EEcCCC-
Q psy519          128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHVS--PVLSIAFSPCGKYLA-SGGEDG-  200 (351)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~dg-  200 (351)
                      .+......+....-+..+.+++.......++.|.-.++.....   ...+..+..  .+..+..  .+.+|+ ....++ 
T Consensus       271 ~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  271 LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS  348 (414)
T ss_dssp             EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred             EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence            3333344444333333555555554444467888888887652   224444444  3444444  344444 444444 


Q ss_pred             -eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE--EeC--CCeEEEEeCCCCceee
Q psy519          201 -LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT--GSL--TGTVQFYGWPSASKIG  257 (351)
Q Consensus       201 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~--dg~i~i~~~~~~~~~~  257 (351)
                       .|+++++..+.....+.....+.+..+...++++.+..  .+.  -+++.-||+.+++...
T Consensus       349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             cEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence             58899987455566665555566777766666654432  222  3688999998887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.64  E-value=2.3e-05  Score=68.35  Aligned_cols=223  Identities=17%  Similarity=0.109  Sum_probs=131.3

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------------------------------------
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------------------------------------   45 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------------------------------------   45 (351)
                      .|..+.|+++  ..-|+++..+|.|-+|.+..+                                               
T Consensus         3 ~v~~vs~a~~--t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAPE--TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEETT--TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecCC--CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            5788999999  888999999999998876443                                               


Q ss_pred             -cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe--eC------CCCCeEEEEEeC-----CC---CEEEE
Q psy519           46 -TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF--VG------HKQDVTCARFHP-----KI---TYIGT  108 (351)
Q Consensus        46 -~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~------~~~~i~~i~~~~-----~~---~~l~~  108 (351)
                       .....++|++++.+.-|-.+.|..+|.+.|.|++....+..-  ..      ....++++.|.-     |+   -.+++
T Consensus        81 l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             EE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             heeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence             222357888999887777799999999999999877665442  11      234678888863     33   47888


Q ss_pred             EeCCCcEEEEeCC--C-Cce----eEEeccCCCCeEEEE-EccC-C--------------------CEEEEEecCCCCCe
Q psy519          109 GSYDKAVRLWSIT--D-GAS----VRVFSDHVSPVLSIA-FSPC-G--------------------KYLASGGTGSYDKA  159 (351)
Q Consensus       109 ~~~dg~i~i~d~~--~-~~~----~~~~~~~~~~i~~~~-~~~~-~--------------------~~l~~~~~~~~d~~  159 (351)
                      |...|.+.+|.+.  . +..    ......+.+++..+. ++.+ |                    .+++++ .   +..
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-S---e~~  236 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-S---ESD  236 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-----SSE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-c---ccc
Confidence            9999999999874  1 211    111223556666554 3221 1                    134444 3   789


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEEC-----CCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC---CCEEEEEEcC
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH---EPVTSLVWSV  231 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~  231 (351)
                      ++++..-+.+..+...........+.+-     ..+..|++-..+|.+++|.+..-+.+........   ..+...++++
T Consensus       237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            9999988777665544222233344453     2566788888999999999999888887765322   2344566677


Q ss_pred             CCCEEEEEeC
Q psy519          232 TGETLVTGSL  241 (351)
Q Consensus       232 ~~~~l~~~~~  241 (351)
                      +|+.++-.+.
T Consensus       317 ~Gdi~~~~gp  326 (395)
T PF08596_consen  317 NGDIFYWTGP  326 (395)
T ss_dssp             TS-EEEE-SS
T ss_pred             CCCEEEEeCc
Confidence            7776665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.64  E-value=0.00015  Score=60.80  Aligned_cols=226  Identities=14%  Similarity=0.112  Sum_probs=137.3

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe-------------
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF-------------   87 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~-------------   87 (351)
                      ++.|+.|..+| +.+++....    ...+...|..+...++-..+..-.|+.++++++.........             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~   85 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT   85 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccc
Confidence            78999998888 899998332    222344599999998877755556799999998754433210             


Q ss_pred             -eCCCCCeEEEE--EeCCC-CEEEEEeCCCcEEEEeCCCC-----ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           88 -VGHKQDVTCAR--FHPKI-TYIGTGSYDKAVRLWSITDG-----ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        88 -~~~~~~i~~i~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                       ......+..++  -...+ ..|+++ ....|.+|.....     +..+.+. ....+.+++|.  ++.++.+.    ..
T Consensus        86 ~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~----~~  157 (275)
T PF00780_consen   86 KLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT----SK  157 (275)
T ss_pred             cccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe----CC
Confidence             11223444444  11233 344444 4568888887653     3445554 45788899998  66777776    46


Q ss_pred             eEEEEEccCCceeEEeccC------------CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEE
Q psy519          159 AVRLWSITDGASVRVFSDH------------VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS  226 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  226 (351)
                      ...+.|+.++.....+...            ..++..+.. +++.+|++.  +..-.+.|. .|+..+.....=...+.+
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~  233 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQS  233 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhE
Confidence            6889999877554433211            123333333 345666654  333334444 454433111222345666


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecceeEE
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAA  266 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  266 (351)
                      +++.  ..+|++... +.|.||++.+++.++....+.+.+
T Consensus       234 ~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~  270 (275)
T PF00780_consen  234 VAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPNIRL  270 (275)
T ss_pred             EEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCCEEE
Confidence            7763  457777655 569999999999988876665544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=0.00019  Score=63.01  Aligned_cols=237  Identities=13%  Similarity=0.096  Sum_probs=161.8

Q ss_pred             eEEeeecCCccccEEEEe-cCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeE
Q psy519           14 FIQNSFKPETVEDVLANL-ESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ...+...|+  +..+... .....+...+....     .......-..++.++.+..  +....++.|.+.|..+.+...
T Consensus        33 ~~~v~~~~~--g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~  110 (381)
T COG3391          33 PGGVAVNPD--GTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CceeEEcCc--cCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence            345677777  6443333 22224544444422     0111133346677777763  666668999999988777666


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSY---DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ...-.. ....++++|+++.+..+..   ++++.+.|..+++..........+ ..++++|+|+.++++..  .++.|.+
T Consensus       111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~--~~~~v~v  186 (381)
T COG3391         111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS--DDNTVSV  186 (381)
T ss_pred             Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec--CCCeEEE
Confidence            554333 5678999999988877665   688999999988888775544345 88999999998887763  2899999


Q ss_pred             EEccCCceeE-----EeccCCCCEEEEEECCCCcEEEEEcCC---CeEEEEEcCCCcEEEE-eeccCCCCEEEEEEcCCC
Q psy519          163 WSITDGASVR-----VFSDHVSPVLSIAFSPCGKYLASGGED---GLVLTHELTTGRVISR-FHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       163 ~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~  233 (351)
                      .|.+.....+     .... ......+.++|+|+++.+....   +.+...|..++..... ...... ....+..+|+|
T Consensus       187 i~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g  264 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG  264 (381)
T ss_pred             EeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC
Confidence            9976655443     1222 2334678999999977766543   5899999988776654 222222 56788999999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCceeee
Q psy519          234 ETLVTGSL-TGTVQFYGWPSASKIGI  258 (351)
Q Consensus       234 ~~l~~~~~-dg~i~i~~~~~~~~~~~  258 (351)
                      +.+.+... .+.+.+.|..+......
T Consensus       265 ~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         265 KAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CEEEEEecCCCeEEEEeCCCCceeee
Confidence            99988754 48999999988777654

>KOG1008|consensus

Probab=98.63  E-value=1.8e-08  Score=88.22  Aligned_cols=237  Identities=14%  Similarity=0.208  Sum_probs=150.3

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCC-cE-EEEe----CCCcEEE
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKG-LA-LTGS----RDTTARL   75 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~-~~-~~~~----~d~~i~v   75 (351)
                      .....+.|++++-+.....+++|..+|.|.+-.....       ..++...+++++|++-. .. ++|-    .|..+.|
T Consensus        54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            3456778888877632457889999999999887665       56778899999999864 33 4442    3567999


Q ss_pred             EeCCCC--eee--EEeeC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEcc-CCCEE
Q psy519           76 WSLEQM--YPL--RIFVG-HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSP-CGKYL  148 (351)
Q Consensus        76 w~~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l  148 (351)
                      ||+.++  .+.  ..+.+ ......+++|..+.+++.+|.....+.++|++... ....+  ....+..+..+| .++++
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCce
Confidence            999876  222  12222 33445688898888999999999999999998432 22222  234566788888 77888


Q ss_pred             EEEecCCCCCeEEEEE-ccCCc-eeEEecc----CCCCEEEEEECCCC-cEEEEEcC-CCeEEEEEcCCC--------c-
Q psy519          149 ASGGTGSYDKAVRLWS-ITDGA-SVRVFSD----HVSPVLSIAFSPCG-KYLASGGE-DGLVLTHELTTG--------R-  211 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d-~~~~~-~~~~~~~----~~~~i~~~~~~~~~-~~l~~~~~-dg~i~i~d~~~~--------~-  211 (351)
                      +.-.    |+.|.+|| .++-+ ++..+..    ....+..++|+|-. ..+++... .+.|++||+..-        . 
T Consensus       212 cs~~----dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~  287 (783)
T KOG1008|consen  212 CSNS----DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV  287 (783)
T ss_pred             eccc----cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence            7654    89999999 44322 2222211    12348899999943 34444444 578999998531        0 


Q ss_pred             ---EEEEeeccCC---CCEEEEEEcCCC--CEEEEEeCCCeEEEEeCC
Q psy519          212 ---VISRFHLQEH---EPVTSLVWSVTG--ETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       212 ---~~~~~~~~~~---~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~  251 (351)
                         ....+..++.   ..|..+.|++..  ....++..+-++.-+++.
T Consensus       288 ~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  288 FVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH  335 (783)
T ss_pred             eeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence               1111122333   457777787754  234444444455544443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.62  E-value=0.00031  Score=62.13  Aligned_cols=220  Identities=11%  Similarity=0.080  Sum_probs=124.7

Q ss_pred             EeeecCCccccEEEEecCC----------C-ceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519           16 QNSFKPETVEDVLANLESQ----------K-NLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~----------~-~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      .++.+|.  |..+|....+          . .|++|+....    ..-..+.+.++.|+.+..++....||.++++|+..
T Consensus        33 ~va~a~~--gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   33 IVAVAPY--GGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             eEEEcCC--CceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence            3566777  7777766443          1 4889988877    11112789999999998998889999999999863


Q ss_pred             CeeeEEe-------eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeE----------EEEEc
Q psy519           81 MYPLRIF-------VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVL----------SIAFS  142 (351)
Q Consensus        81 ~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~----------~~~~~  142 (351)
                      .. ...+       .-....+....+..+|-.++  ..++.+.+..-.... ..+.+........          ...++
T Consensus       111 ~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  111 EF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             ce-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence            33 1111       11111222223333453333  334555444322211 1111111011000          01233


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE  222 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  222 (351)
                      .+....+....   ++.+.+.+-...+.   + ...+++..++.||+++++|.-..+|.+.+.+..-.+....+......
T Consensus       188 ~~~~~~i~~~~---g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  188 SDRVVEILLAN---GETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             cCcceEEEEec---CCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence            33333333333   44555443222111   2 12468999999999999999999999999887666777777655556


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      .+..+.|.-+...++.-  +..+.+..
T Consensus       261 ~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  261 PPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            78889998664433332  34555555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=0.00028  Score=64.17  Aligned_cols=265  Identities=14%  Similarity=0.081  Sum_probs=148.8

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCcc------ce--EEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDM------TV--WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK   91 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~------~i--~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~   91 (351)
                      +..+..++.++.+.-.|..++     ......      .+  ..+....++.++.++.++.|+-+|.++++.+..+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            445666777888888888766     111110      00  01112112566888889999999999999988775433


Q ss_pred             CC--eEEEEEeC--CCCEEEEEe---------CCCcEEEEeCCCCceeEEeccCCCC--------------------e-E
Q psy519           92 QD--VTCARFHP--KITYIGTGS---------YDKAVRLWSITDGASVRVFSDHVSP--------------------V-L  137 (351)
Q Consensus        92 ~~--i~~i~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~--------------------i-~  137 (351)
                      ..  -..+.-+|  .+..++.++         .++.+.-+|..+|+.+..+......                    + .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            21  00111112  124455553         3678999999999988776432110                    0 1


Q ss_pred             EEEEccCCCEEEEEecCC---------------CCCeEEEEEccCCceeEEeccCCCCEE------EEEEC----CCCc-
Q psy519          138 SIAFSPCGKYLASGGTGS---------------YDKAVRLWSITDGASVRVFSDHVSPVL------SIAFS----PCGK-  191 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~---------------~d~~i~i~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~-  191 (351)
                      ..++.+.+..++.+....               .++.|.-+|.++++.+-.++.......      ...+.    -++. 
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            244555566777775400               123799999999998877642111110      01111    1333 


Q ss_pred             --EEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE------------------eCCCeEEEEeCC
Q psy519          192 --YLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG------------------SLTGTVQFYGWP  251 (351)
Q Consensus       192 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~i~~~~  251 (351)
                        .+++++.+|.+...|.++|+.+-......    ..+..+|  ..++.+                  ..+|.+.-.|..
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~  374 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK  374 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence              67888899999999999999887654321    1223333  223222                  235778888888


Q ss_pred             CCceeeeeecce-------------eEEecCCceeeeeeccceeeEEEeeeceeCceEEE
Q psy519          252 SASKIGIGVYPR-------------CAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       252 ~~~~~~~~~~~~-------------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      +++.+=......             ......+..+.++..++   .+..++..+|+...-
T Consensus       375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG---~l~ald~~tG~~lW~  431 (488)
T cd00216         375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG---YFRAFDATTGKELWK  431 (488)
T ss_pred             CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC---eEEEEECCCCceeeE
Confidence            887664433220             01112344555555555   455555666664443

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.60  E-value=9.2e-05  Score=61.87  Aligned_cols=232  Identities=14%  Similarity=0.065  Sum_probs=139.6

Q ss_pred             eeecCCccccEEEEec----------CCCceEEEecCCc-------cC-CCc----cceEEEEECCCCcE-EE--EeCCC
Q psy519           17 NSFKPETVEDVLANLE----------SQKNLQSRYLPYY-------TS-GHD----MTVWSVEACSKGLA-LT--GSRDT   71 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~----------~~~~i~i~~~~~~-------~~-~~~----~~i~~~~~~~~~~~-~~--~~~d~   71 (351)
                      +..||+  ++.+.+++          +...|.+||..+.       +. .|.    ...+.++++.+|++ +.  .+-..
T Consensus        41 ~~~spd--gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   41 VALSPD--GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEE-TT--SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             eeECCC--CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            678999  88877643          3456899999887       11 111    12233577788877 22  23356


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeEE----eccCCCCeE-EEEEccCC
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT-DGASVRV----FSDHVSPVL-SIAFSPCG  145 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~----~~~~~~~i~-~~~~~~~~  145 (351)
                      .|.|.|++.++.+..+.-.  .+..+--.++ +.+.+-+.||.+.-..+. .|+..+.    |.....++. .-++...+
T Consensus       119 SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            7888899988888777532  2222222222 457777889999988887 4554322    222223332 33455555


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCcee--EEecc----------CCCCEEEEEECCCCcEEEEEcC--------C--CeEE
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASV--RVFSD----------HVSPVLSIAFSPCGKYLASGGE--------D--GLVL  203 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~~~~--------d--g~i~  203 (351)
                      ..++..+.   +|.|+-.|+......  ..+..          ..+.-..+++++..+.|++.-.        |  ..|.
T Consensus       196 ~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW  272 (342)
T PF06433_consen  196 GRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW  272 (342)
T ss_dssp             TEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred             CeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence            55554556   899999998765422  11110          0122334778776655554321        1  2588


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCceeee
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWSVTGE-TLVTG-SLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~~~~~~~~~~~  258 (351)
                      ++|+.+++.+.++.+.+  ++.++..+.+.+ +|++. ..++.+.+||..+++.++.
T Consensus       273 v~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  273 VYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            99999999999987643  577999999766 56554 4579999999999988875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649|consensus

Probab=98.59  E-value=0.00016  Score=57.30  Aligned_cols=252  Identities=12%  Similarity=0.025  Sum_probs=138.4

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF   99 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~   99 (351)
                      ..+++.|+..+.+.-.|...+    ...-..+|.+-+.- -|.+ +.|+..|.+++.+.++|.+...+..-..--.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            456777888888877777766    22223333333322 3445 99999999999999999888777543322223445


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc--C
Q psy519          100 HPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD--H  177 (351)
Q Consensus       100 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~  177 (351)
                      .+++..+..++.|++.+..|.++..++...+-..+-..+-+..|-...|..+..   .|.+.--..+.... .++-.  .
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t---~G~vlavt~~~~~~-~~~w~~~~  177 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAIT---AGAVLAVTKNPYSS-TEFWAATR  177 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEec---cceEEEEccCCCCc-ceehhhhc
Confidence            778999999999999999999999888887654444455666773333333334   56555544443311 11111  1


Q ss_pred             CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE-----------EEEEEcCCCCEEEEEeCCCeEE
Q psy519          178 VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV-----------TSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       178 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      .+|+.+--.. -+..+..++-||.+.-+| ..|+++.++.  ..++|           ..+.+..++-+.+..-.. .-.
T Consensus       178 ~~PiF~splc-v~~sv~i~~VdG~l~~f~-~sG~qvwr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~-ghL  252 (354)
T KOG4649|consen  178 FGPIFASPLC-VGSSVIITTVDGVLTSFD-ESGRQVWRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIA-GHL  252 (354)
T ss_pred             CCccccCcee-ccceEEEEEeccEEEEEc-CCCcEEEeec--CCCceecccccCCCcceEEEEecCCeEEEecccc-ceE
Confidence            2233221000 134455555667666666 4555554332  12221           223332222222222222 335


Q ss_pred             EEeCCCCceeeeeecceeEE---ecCC---ceeeeeeccceeeEEE
Q psy519          247 FYGWPSASKIGIGVYPRCAA---QPVG---FEAATLAANSRVRTLR  286 (351)
Q Consensus       247 i~~~~~~~~~~~~~~~~~~~---s~~~---~~~~~~~~~~~~~~~~  286 (351)
                      +|..++|...+...-+.+.|   +|.+   +.+...+.++++..++
T Consensus       253 ~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~  298 (354)
T KOG4649|consen  253 LWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILM  298 (354)
T ss_pred             EEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEE
Confidence            67777765554433232222   2222   2456666777666554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.58  E-value=1e-05  Score=71.13  Aligned_cols=113  Identities=21%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             EEEEEeC-CCCEEEEE----eCCCc----EEEEeCCCCceeEE---eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           95 TCARFHP-KITYIGTG----SYDKA----VRLWSITDGASVRV---FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        95 ~~i~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      .++.|+. +...+.+.    +.+|.    -.+|++..++..+.   --..+..+.+++++|+...++.|+.   ||.|.+
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~---DgSiiL  285 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE---DGSIIL  285 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec---CCeEEE
Confidence            4667765 44455443    23343    35666655442211   1236789999999999999999999   999999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV  212 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  212 (351)
                      ||...+...  +....-.+..++|+|+|.++++|+..|.+.+||+.-...
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            998766333  223445678899999999999999999999999875443

>KOG2114|consensus

Probab=98.57  E-value=3.6e-05  Score=70.42  Aligned_cols=192  Identities=17%  Similarity=0.182  Sum_probs=124.2

Q ss_pred             ECCCC-cEEEEeCCCcEEEEeCCCCeeeEEeeCCCCC-eEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC------c
Q psy519           58 ACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQD-VTCARFHPKITYIGTGSYDK-----AVRLWSITDG------A  124 (351)
Q Consensus        58 ~~~~~-~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~------~  124 (351)
                      |++.+ .++.|+.+|.|.+++- ..+.++.++.+... +..+....+.++|++.+.|+     .+++|+++..      .
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            44555 4599999999988873 34455777777776 44443333446777777764     4899998642      2


Q ss_pred             ee---EEec----cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc---C-CceeEEeccCCCCEEEEEECCCCcEE
Q psy519          125 SV---RVFS----DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT---D-GASVRVFSDHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       125 ~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~~~~~~~l  193 (351)
                      ++   +.+.    ....++.+++.+.+-+.+++|-.   +|.|..+.-.   . +....-......+|+.+.+..+++.+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~---nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT---NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEec---CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence            22   1111    13578899999999999999998   9999988521   1 22222223456799999999888763


Q ss_pred             EEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          194 ASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      +-......|.+|.+....+.....-.+..+..+..+++...-+++++ +..+.+|+.+..+
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            32333457999999744422222224446788888887555344443 3589999987543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.57  E-value=8e-06  Score=71.89  Aligned_cols=189  Identities=13%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             CccceEEEEECCCCcE---EEEeCC--CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe-CCC--cEEEEeC
Q psy519           49 HDMTVWSVEACSKGLA---LTGSRD--TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS-YDK--AVRLWSI  120 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~---~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg--~i~i~d~  120 (351)
                      ....+..-.|+|+++.   ++-...  ..+.++++++++...... ....-...+|+|||+.|+... .||  .|++.|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            3456677789999854   222222  469999999887555443 233334578999998876554 455  4777788


Q ss_pred             CCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-C
Q psy519          121 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-D  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d  199 (351)
                      ..+...+ +....+.-..-.|+|||++++..+.....-.|.++|+..+.. ..+......-..-.|+|||++++..+. +
T Consensus       270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            7766433 544444444678999999999887543334678888766554 333333333337789999999887764 3


Q ss_pred             Ce--EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          200 GL--VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       200 g~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                      |.  |.+.|+.++.....+  ........-.|.++++.+...+..
T Consensus       348 g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         348 GQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEEeccC
Confidence            44  677777666643333  233344566788888877665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.54  E-value=0.00019  Score=65.26  Aligned_cols=225  Identities=14%  Similarity=0.130  Sum_probs=136.7

Q ss_pred             cEEEEecCCCceEEEecCCc-------cCCCc---cceE-EEEECCCCcEEEEe---------CCCcEEEEeCCCCeeeE
Q psy519           26 DVLANLESQKNLQSRYLPYY-------TSGHD---MTVW-SVEACSKGLALTGS---------RDTTARLWSLEQMYPLR   85 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-------~~~~~---~~i~-~~~~~~~~~~~~~~---------~d~~i~vw~~~~~~~~~   85 (351)
                      ..++.++.++.|.-+|..++       ...+.   ..+. ...+. ++.++.++         .++.+.-+|.++++.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            67777788899998888776       11110   0011 11111 24444443         46789999999999887


Q ss_pred             EeeCCCCC--------------------e-EEEEEeCCCCEEEEEeCCC------------------cEEEEeCCCCcee
Q psy519           86 IFVGHKQD--------------------V-TCARFHPKITYIGTGSYDK------------------AVRLWSITDGASV  126 (351)
Q Consensus        86 ~~~~~~~~--------------------i-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~  126 (351)
                      .+......                    + ...++.+.+..++.++.++                  .+.-+|..+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            76542110                    1 1234444566777776554                  7999999999988


Q ss_pred             EEeccCCCCeE------EEEEc----cCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEE
Q psy519          127 RVFSDHVSPVL------SIAFS----PCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       127 ~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  193 (351)
                      ..++.......      ...+.    -++.   .+++++.   +|.+..+|.++|+.+-.....   ...+..+|  ..+
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~---~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~v  341 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK---NGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLV  341 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC---CceEEEEECCCCcEeeEeEee---ccccccCC--ceE
Confidence            87642211110      01111    1333   5667777   999999999999988765421   11233444  223


Q ss_pred             EEE------------------cCCCeEEEEEcCCCcEEEEeeccCC-------CCE--EEEEEcCCCCEEEEEeCCCeEE
Q psy519          194 ASG------------------GEDGLVLTHELTTGRVISRFHLQEH-------EPV--TSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       194 ~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~-------~~v--~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      +.+                  ..+|.+.-.|+.+++.+-+......       .+.  ..+.  ..+..+++++.||.++
T Consensus       342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~  419 (488)
T cd00216         342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFR  419 (488)
T ss_pred             EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEE
Confidence            322                  2357888899999987766543310       111  1122  2467888999999999


Q ss_pred             EEeCCCCceeeeeec
Q psy519          247 FYGWPSASKIGIGVY  261 (351)
Q Consensus       247 i~~~~~~~~~~~~~~  261 (351)
                      .+|..+|+.+-...+
T Consensus       420 ald~~tG~~lW~~~~  434 (488)
T cd00216         420 AFDATTGKELWKFRT  434 (488)
T ss_pred             EEECCCCceeeEEEC
Confidence            999999998866444

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=0.00057  Score=60.04  Aligned_cols=260  Identities=13%  Similarity=0.072  Sum_probs=165.7

Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEE
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      +.+++..+.+....+..+. ....+...+++..+.... ....+...+................-..++.++.++.++..
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            6777766666555554343 456678888885554443 22345555555222222222111344678889988866555


Q ss_pred             ecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC---CCeEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE---DGLVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                      ...  +..|.+.|..+.+......... ....++++|+++.+.++..   ++.+.+.|..+++...... ....+ ..++
T Consensus        92 ~~~--~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a  166 (381)
T COG3391          92 TGD--SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVA  166 (381)
T ss_pred             cCC--CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEE
Confidence            431  6899999988777776664333 5678999999987777665   6889999999888888743 33334 8999


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEeCCCCceee-e--------eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEE
Q psy519          229 WSVTGETLVTGS-LTGTVQFYGWPSASKIG-I--------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       229 ~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~-~--------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      ++|+|..++... .++.|.+.|.......+ .        .....+.++|+|..+.+.........+...+...+.....
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            999999776655 68999999988776663 1        2224689999999766666655333444444444333322


Q ss_pred             -------eeEEEEecCCceeeccEEEecCCccccceeeeeeeeecCC
Q psy519          299 -------ESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQMIPVPS  338 (351)
Q Consensus       299 -------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  338 (351)
                             ......+.|++.+........+.+..++..+.......+.
T Consensus       247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence                   1123577888877665544557777777766554444333

>KOG1645|consensus

Probab=98.51  E-value=5.8e-06  Score=68.93  Aligned_cols=159  Identities=13%  Similarity=0.151  Sum_probs=105.0

Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEE
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLAS  150 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  150 (351)
                      +++.+..+.+....+..+...|..++|+|..+ ++..++.+..|++.|+++...+..+..+ ..+.+++|.-+.. +++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66666666666666677888999999999766 7888999999999999999888888766 8899999998765 4555


Q ss_pred             EecCCCCCeEEEEEccCCcee-EEecc--CCCCEEEEEE------CCCCcEEEEEcCCCeEEEEEcC--CCcEEEEeecc
Q psy519          151 GGTGSYDKAVRLWSITDGASV-RVFSD--HVSPVLSIAF------SPCGKYLASGGEDGLVLTHELT--TGRVISRFHLQ  219 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~-~~~~~--~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~  219 (351)
                      |..   +|.|.+||++..+-. ..+.+  ...+|..++.      .+.|.+++....+  +..|+..  .+......+..
T Consensus       254 Gl~---nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele  328 (463)
T KOG1645|consen  254 GLQ---NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE  328 (463)
T ss_pred             ecc---CceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence            555   999999999976422 11211  1223333322      2345555555544  3455543  23333334444


Q ss_pred             CCCCEEEEEEcCCCCEEE
Q psy519          220 EHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       220 ~~~~v~~~~~~~~~~~l~  237 (351)
                      ..+...++.+.+-.+.++
T Consensus       329 ~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  329 PPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCcceeeeeecCccceEE
Confidence            456667777776444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=0.00022  Score=63.20  Aligned_cols=176  Identities=11%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  130 (351)
                      .....+.++|+|++++.+.||...++.....+....     +.-..+.|.+.+ .+|+-.....|.++.--..+....++
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence            346789999999997778899999998555444322     233467898854 46666668889997432333333343


Q ss_pred             cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      . +..+..+-.   |..|+..+    ++.|.+||+.+++.++.+...  +|..+.|++++++++..+.+ .+.+++....
T Consensus       107 ~-~~~~~~If~---G~LL~~~~----~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  107 L-PFSVEKIFG---GNLLGVKS----SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEE----TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             C-CcccceEEc---CcEEEEEC----CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            2 223444433   88888776    568999999999999998643  48999999999999999865 5777765432


Q ss_pred             -----------cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          211 -----------RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       211 -----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                                 .....+. .....|.+.+|..+  .++-.+.. .++.
T Consensus       176 ~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             HHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             hcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence                       0222221 22467889999765  44444444 6666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.48  E-value=0.0004  Score=59.24  Aligned_cols=221  Identities=13%  Similarity=0.039  Sum_probs=110.3

Q ss_pred             EECCCCcE--EEEeCC--CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC
Q psy519           57 EACSKGLA--LTGSRD--TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH  132 (351)
Q Consensus        57 ~~~~~~~~--~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  132 (351)
                      +|.++|+.  +.+..|  ..+.+.|+++++..+.-.+.........++|+.+.++.......++-.|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            56778854  444444  45777899998866554433233335667888888876666678999999998866665555


Q ss_pred             CCCeEEEEEc--cCCCEEEEEec-------------------CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCc
Q psy519          133 VSPVLSIAFS--PCGKYLASGGT-------------------GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK  191 (351)
Q Consensus       133 ~~~i~~~~~~--~~~~~l~~~~~-------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  191 (351)
                      ...+-...|.  .++..++-.-.                   +.....|.-.|+++|+....+. ....+..+.|+|...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            5555445553  35555443321                   1123467777888887655554 456678899999554


Q ss_pred             -EEEEEcC------CCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeee
Q psy519          192 -YLASGGE------DGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTG-----SLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       192 -~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~  258 (351)
                       .|+-|-+      |..|.+.+.. +.....+..... ..+..=-|.|||..|..-     +.+..|.-+|..+++....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence             4444432      2234444432 333333321211 334555789999876542     2244677788888765443


Q ss_pred             e---ecceeEEecCCceeeeeecc
Q psy519          259 G---VYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       259 ~---~~~~~~~s~~~~~~~~~~~~  279 (351)
                      .   .......++||..++--+.+
T Consensus       280 ~~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  280 MEMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EeCCceeeeEEcCCCCEEEecCCC
Confidence            2   33456678888877554443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.44  E-value=0.00032  Score=57.00  Aligned_cols=187  Identities=14%  Similarity=0.177  Sum_probs=106.6

Q ss_pred             ccceEEeeecCCcccc-EEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcEEEEe-CCCcEEEEeCCCCe
Q psy519           11 HKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLALTGS-RDTTARLWSLEQMY   82 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~-~d~~i~vw~~~~~~   82 (351)
                      ...+..++|.|+  .+ ++++....+.|..++....      +.+ .+..-.+++..++.++... .++.+.++++....
T Consensus        21 ~~e~SGLTy~pd--~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   21 LDELSGLTYNPD--TGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             -S-EEEEEEETT--TTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             cCCccccEEcCC--CCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            456899999997  55 5566667788877777644      222 3456778888888885444 58899999884321


Q ss_pred             ------eeEEee-----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---CceeEE--------eccCCCCeEEEE
Q psy519           83 ------PLRIFV-----GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD---GASVRV--------FSDHVSPVLSIA  140 (351)
Q Consensus        83 ------~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~~~~~i~~~~  140 (351)
                            ....+.     .++..+-.++|.|.++.|+.+-...-..+|.++.   ...+..        .......+.+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                  111221     3456689999999888887777766666666543   111111        112335678899


Q ss_pred             EccCC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCC---------CCEEEEEECCCCcEEEEEcCCCeEEEE
Q psy519          141 FSPCG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHV---------SPVLSIAFSPCGKYLASGGEDGLVLTH  205 (351)
Q Consensus       141 ~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~  205 (351)
                      ++|.. .+++....   +..|..+| .+|+.+..+.-..         ...-.++|.++|++.+++ +-+..+.|
T Consensus       178 ~~p~t~~lliLS~e---s~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  178 YDPRTGHLLILSDE---SRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EETTTTEEEEEETT---TTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             EcCCCCeEEEEECC---CCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            99965 45555555   88899999 6777666554222         356789999998655544 66655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=4.9e-05  Score=68.60  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCC-----CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce----
Q psy519          100 HPKITYIGTGSYDKAVRLWSITD-----GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS----  170 (351)
Q Consensus       100 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~----  170 (351)
                      .++|++...  .++.|.+.|.++     .+.+..+. -......++++|||+++++++..  +..+.+.|+++.+.    
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhhc
Confidence            447776665  367899999988     34444444 45566889999999999887653  88999999987542    


Q ss_pred             --------eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC----------CcEEEEeeccCCCCEEEEEE---
Q psy519          171 --------VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT----------GRVISRFHLQEHEPVTSLVW---  229 (351)
Q Consensus       171 --------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~---  229 (351)
                              ..+.+...+| ...+|.++|+...+..-|..|..|++..          ...+.++..  +-.+-.+.-   
T Consensus       360 ~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV--~y~pgh~~~~~g  436 (635)
T PRK02888        360 KIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDV--HYQPGHNHASMG  436 (635)
T ss_pred             cCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccC--CCccceeeecCC
Confidence                    3333333333 4678999998777888899999999875          233333322  122222222   


Q ss_pred             ---cCCCCEEEEEeC
Q psy519          230 ---SVTGETLVTGSL  241 (351)
Q Consensus       230 ---~~~~~~l~~~~~  241 (351)
                         .|+|++|++...
T Consensus       437 ~t~~~dgk~l~~~nk  451 (635)
T PRK02888        437 ETKEADGKWLVSLNK  451 (635)
T ss_pred             CcCCCCCCEEEEccc
Confidence               578888887643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.40  E-value=0.00095  Score=57.04  Aligned_cols=256  Identities=14%  Similarity=0.097  Sum_probs=122.8

Q ss_pred             eeecCCccccEEEEec-CCC--ceEEEecCCc----cCCCc-cceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           17 NSFKPETVEDVLANLE-SQK--NLQSRYLPYY----TSGHD-MTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~-~~~--~i~i~~~~~~----~~~~~-~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      =+|.++  |+.|+.++ .+|  .+.+.|+.+.    +.... .......++++.+. +-...+..++-.|+++.+....+
T Consensus        41 ~~ft~d--G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   41 NCFTDD--GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             --B-TT--S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CCcCCC--CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            478888  86665544 454  5666677666    22221 21223455677665 44455678899999998876666


Q ss_pred             eCCCCCeEEEEE--eCCCCEEEEEe----------------------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           88 VGHKQDVTCARF--HPKITYIGTGS----------------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        88 ~~~~~~i~~i~~--~~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                      .....-+-...|  +.++..++-.-                      ....|.-.|+.+|+....+. ....+..+.|+|
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP  197 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP  197 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence            666655544555  34566554321                      12356677888877655554 457788899999


Q ss_pred             C-CCEEEEEecCCCCCe-EEEEEccC-CceeEEeccCC--CCEEEEEECCCCcEEEEEc-----CCCeEEEEEcCCCcEE
Q psy519          144 C-GKYLASGGTGSYDKA-VRLWSITD-GASVRVFSDHV--SPVLSIAFSPCGKYLASGG-----EDGLVLTHELTTGRVI  213 (351)
Q Consensus       144 ~-~~~l~~~~~~~~d~~-i~i~d~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~  213 (351)
                      . ...|+.|-++..+.. -+||-+++ +.....+..+.  ..+..=-|.|||..+.--+     .+..|.-+|+.+++..
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            5 455555554433332 35565543 33333333222  2234456899998665422     2445777788877654


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCC----------------eEEEEeCCCCceeeee---------------ecc
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTG----------------TVQFYGWPSASKIGIG---------------VYP  262 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~i~~~~~~~~~~~~---------------~~~  262 (351)
                      .....   .....+--++||++++-=+.|.                -|++++++.+......               .-+
T Consensus       278 ~~~~~---p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  278 RLMEM---PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             EEEeC---CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            32221   2355666778999876633332                4566777665543210               124


Q ss_pred             eeEEecCCceeeeeec
Q psy519          263 RCAAQPVGFEAATLAA  278 (351)
Q Consensus       263 ~~~~s~~~~~~~~~~~  278 (351)
                      ...|+|||+.++..+.
T Consensus       355 hp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             --EE-TTSSEEEEEE-
T ss_pred             CCccCCCCCEEEEECC
Confidence            5677777776554443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.37  E-value=0.0011  Score=57.93  Aligned_cols=235  Identities=18%  Similarity=0.135  Sum_probs=132.5

Q ss_pred             ceEEEEECCC-CcEEEEeCCCcEEEEeCCCCe-------------------------------------------eeEEe
Q psy519           52 TVWSVEACSK-GLALTGSRDTTARLWSLEQMY-------------------------------------------PLRIF   87 (351)
Q Consensus        52 ~i~~~~~~~~-~~~~~~~~d~~i~vw~~~~~~-------------------------------------------~~~~~   87 (351)
                      .|+.+.|.++ +.++.+...|.|-||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5788888887 466889999999998653211                                           11112


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe--cc------CCCCeEEEEEcc-----CC---CEEEEE
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF--SD------HVSPVLSIAFSP-----CG---KYLASG  151 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l~~~  151 (351)
                      ....++|++++.+ |-.+++.|..+|.+.+.|++....+..-  ..      ....++++.|.-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2346788999887 5569999999999999999877765442  22      334678888863     33   367788


Q ss_pred             ecCCCCCeEEEEEccC---Cce----eEEeccCCCCEEEEE-ECCC-----------------C---cEEEEEcCCCeEE
Q psy519          152 GTGSYDKAVRLWSITD---GAS----VRVFSDHVSPVLSIA-FSPC-----------------G---KYLASGGEDGLVL  203 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~---~~~----~~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~i~  203 (351)
                      ..   .|.+.+|.+--   +.-    ......+.+++..+. ++.+                 +   .-+++...+..++
T Consensus       162 Tn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  162 TN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             ET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             eC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            77   89999998751   211    111224555655554 3211                 0   1233334467799


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCceeeeeec---------ceeEEecC
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWS-----VTGETLVTGSLTGTVQFYGWPSASKIGIGVY---------PRCAAQPV  269 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---------~~~~~s~~  269 (351)
                      ++...+.+..++.. ........+++-     ..+..|++-..+|.+++|.++..+.+....+         ....++++
T Consensus       239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~  317 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN  317 (395)
T ss_dssp             EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred             EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence            99998877766553 332333444552     3567788889999999999999888865333         45788888


Q ss_pred             CceeeeeeccceeeEEEeeecee
Q psy519          270 GFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      |..+.. ........+.+|....
T Consensus       318 Gdi~~~-~gpsE~~l~sv~~~~~  339 (395)
T PF08596_consen  318 GDIFYW-TGPSEIQLFSVWGEGR  339 (395)
T ss_dssp             S-EEEE--SSSEEEEEEEES---
T ss_pred             CCEEEE-eCcccEEEEEEEccCC
Confidence            885543 3445566666766433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.36  E-value=0.0017  Score=58.01  Aligned_cols=211  Identities=16%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             eEEEecCCccCCC-ccceEEEEECCCCcE--EEEeCCC----cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEE
Q psy519           37 LQSRYLPYYTSGH-DMTVWSVEACSKGLA--LTGSRDT----TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTG  109 (351)
Q Consensus        37 i~i~~~~~~~~~~-~~~i~~~~~~~~~~~--~~~~~d~----~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  109 (351)
                      -.+.|.+....++ ...+....++|+|++  ++.+..|    .++++|+++++.+...-. ......+.|.++++.|+..
T Consensus       109 evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  109 EVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEE
T ss_pred             EEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEE
Confidence            4566776654444 344446889999987  3333434    499999999977643211 1112349999998877666


Q ss_pred             eCCC-----------cEEEEeCCCCcee--EEeccCCCC--eEEEEEccCCCEEEEEecCCCC-CeEEEEEccCC----c
Q psy519          110 SYDK-----------AVRLWSITDGASV--RVFSDHVSP--VLSIAFSPCGKYLASGGTGSYD-KAVRLWSITDG----A  169 (351)
Q Consensus       110 ~~dg-----------~i~i~d~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~~~~d-~~i~i~d~~~~----~  169 (351)
                      ..+.           .|+.|.+.+...-  ..+......  ...+..++++++++.......+ ..+.+.|+..+    .
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~  267 (414)
T PF02897_consen  188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA  267 (414)
T ss_dssp             ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred             EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence            5433           3788888766432  344433322  5688999999998876554335 67899998874    2


Q ss_pred             eeEEeccCCCCE-EEEEECCCCcEEEEEc---CCCeEEEEEcCCCcE--EEEeeccCCC--CEEEEEEcCCCCEEEE-Ee
Q psy519          170 SVRVFSDHVSPV-LSIAFSPCGKYLASGG---EDGLVLTHELTTGRV--ISRFHLQEHE--PVTSLVWSVTGETLVT-GS  240 (351)
Q Consensus       170 ~~~~~~~~~~~i-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~  240 (351)
                      ....+......+ ..+... ++.+++...   .++.|...++.+...  .......+..  .+..+..  .+.+|+. ..
T Consensus       268 ~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~  344 (414)
T PF02897_consen  268 KPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR  344 (414)
T ss_dssp             SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE
T ss_pred             CcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE
Confidence            334443333334 334433 444444443   246777778876652  2212223443  3555544  4455544 44


Q ss_pred             CCC--eEEEEeCC
Q psy519          241 LTG--TVQFYGWP  251 (351)
Q Consensus       241 ~dg--~i~i~~~~  251 (351)
                      .++  .|+++++.
T Consensus       345 ~~~~~~l~v~~~~  357 (414)
T PF02897_consen  345 ENGSSRLRVYDLD  357 (414)
T ss_dssp             ETTEEEEEEEETT
T ss_pred             ECCccEEEEEECC
Confidence            443  68899998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008|consensus

Probab=98.35  E-value=1.6e-07  Score=82.56  Aligned_cols=195  Identities=17%  Similarity=0.229  Sum_probs=128.3

Q ss_pred             cceEEEEECCCCc--E-EEEeCCCcEEEEeCCCCee--eEEeeCCCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEeC
Q psy519           51 MTVWSVEACSKGL--A-LTGSRDTTARLWSLEQMYP--LRIFVGHKQDVTCARFHP-KITYIGTGS----YDKAVRLWSI  120 (351)
Q Consensus        51 ~~i~~~~~~~~~~--~-~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~----~dg~i~i~d~  120 (351)
                      ..+.|+++.-+..  + +.|..+|.|.+-.+....-  -....++...+++++|++ |.+.||.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4566777655443  3 7888899999887764321  223456778899999998 556776663    2567999999


Q ss_pred             CCC--cee--EEecc-CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce-eEEeccCCCCEEEEEECC-CCcEE
Q psy519          121 TDG--ASV--RVFSD-HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSP-CGKYL  193 (351)
Q Consensus       121 ~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l  193 (351)
                      .++  .+.  ..+.+ ......+++|-.+.+.+++|..   .+.++++|+|.... ...+  ....+..+...| .+.++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~---sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT---SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccc---cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCce
Confidence            876  211  12222 3345568899988888998887   88999999984321 1222  234566788888 77887


Q ss_pred             EEEcCCCeEEEEE-cCCCcEEEEeeccCC----CCEEEEEEcCCCC-EEEEEeC-CCeEEEEeCC
Q psy519          194 ASGGEDGLVLTHE-LTTGRVISRFHLQEH----EPVTSLVWSVTGE-TLVTGSL-TGTVQFYGWP  251 (351)
Q Consensus       194 ~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~-~l~~~~~-dg~i~i~~~~  251 (351)
                      ++-. ||.|.+|| .++-+..........    ..+..++|+|... .+++... .++|+.+++.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7766 89999999 433222211111111    3589999999543 4455554 4789999975

>KOG3617|consensus

Probab=98.26  E-value=2.2e-05  Score=71.73  Aligned_cols=109  Identities=18%  Similarity=0.250  Sum_probs=88.0

Q ss_pred             EEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce
Q psy519           95 TCARFHPKITYIGTGSY----DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS  170 (351)
Q Consensus        95 ~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~  170 (351)
                      +-..|+|...++++++.    .|+|.||- ++|++.+... .+-.+++++|+|..-.|+.|-.   -|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe---~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWE---MGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccc---cceeEEEecCCcee
Confidence            44679998888888764    57888885 5676544433 3445678999999888888887   89999999877766


Q ss_pred             eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       171 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      -.....|..+|..+.|+|+|..++++..-|.+.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66667899999999999999999999999999999764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.23  E-value=0.0041  Score=57.03  Aligned_cols=231  Identities=12%  Similarity=0.118  Sum_probs=132.0

Q ss_pred             cEEEEecCCCceEEEecCCc-------cCCCc--cceEEEEECCCCcEEEEe------CCCcEEEEeCCCCeeeEEeeCC
Q psy519           26 DVLANLESQKNLQSRYLPYY-------TSGHD--MTVWSVEACSKGLALTGS------RDTTARLWSLEQMYPLRIFVGH   90 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-------~~~~~--~~i~~~~~~~~~~~~~~~------~d~~i~vw~~~~~~~~~~~~~~   90 (351)
                      ..++.++.++.+.-.|..++       ...+.  ..+.+.-..-++.++.+.      .+|.|.-+|.++|+.+..+..-
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            45666777788877777666       11111  111110001145554443      2689999999999887665321


Q ss_pred             CC-------------------------------CeE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEeCCC
Q psy519           91 KQ-------------------------------DVT-CARFHPKITYIGTGSYD-----K-----------AVRLWSITD  122 (351)
Q Consensus        91 ~~-------------------------------~i~-~i~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~  122 (351)
                      ..                               .+. .+++.|+..+++.+..+     +           +|.-.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence            11                               111 23556656666655421     2           677889999


Q ss_pred             CceeEEeccCCCC---------eEEEEEccCCC---EEEEEecCCCCCeEEEEEccCCceeEE--------ec---c-CC
Q psy519          123 GASVRVFSDHVSP---------VLSIAFSPCGK---YLASGGTGSYDKAVRLWSITDGASVRV--------FS---D-HV  178 (351)
Q Consensus       123 ~~~~~~~~~~~~~---------i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~--------~~---~-~~  178 (351)
                      |+....++.....         ..-+.+..+|+   .++.+..   +|.+++.|-++|+.+..        ..   . ..
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K---~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR---NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC---CceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            9987766542221         12233334665   6677777   99999999999987521        10   0 00


Q ss_pred             -CCE----------------------------EEEEECCCCcEEEEEcCC------------------------------
Q psy519          179 -SPV----------------------------LSIAFSPCGKYLASGGED------------------------------  199 (351)
Q Consensus       179 -~~i----------------------------~~~~~~~~~~~l~~~~~d------------------------------  199 (351)
                       .++                            ..++++|+..++++...+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence             000                            125566665555543322                              


Q ss_pred             ---CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy519          200 ---GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       200 ---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                         |.+.-+|+.+++..-+...... ...+. ..-.+.+++.++.+|.++.+|.++|+.+-...+
T Consensus       438 ~~~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       438 DHMGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence               4577778877776655432211 11111 112456777788899999999999998866444

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.18  E-value=0.00042  Score=59.53  Aligned_cols=174  Identities=15%  Similarity=0.185  Sum_probs=108.4

Q ss_pred             CcEEEEeCCCCeeeEEeeC-CCCCeEEEEE---eCC----CCEEEEEeC----------CCcEEEEeCCCC----ceeEE
Q psy519           71 TTARLWSLEQMYPLRIFVG-HKQDVTCARF---HPK----ITYIGTGSY----------DKAVRLWSITDG----ASVRV  128 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~-~~~~i~~i~~---~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~  128 (351)
                      ..|++.|..+.+.+..+.- ..+.+.+++.   ..+    ..+|++|+.          .|.+.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4688889888877665542 2334444443   322    467777643          288999999884    22222


Q ss_pred             e--ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-eeEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          129 F--SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-SVRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       129 ~--~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      +  ....++|++++-- ++. ++++.    .+.|.+|++...+ ....-. .....+.++...  ++++++|.....+.+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee----cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence            2  2357889988776 444 55543    6899999998887 333322 223356666655  568999988777887


Q ss_pred             EEcCC-CcEEEEeec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          205 HELTT-GRVISRFHL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       205 ~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +..+. ...+..+.. .....+.++.+-++++.++++..+|.+.++..+.
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            75543 232333321 2235688888886767999999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.18  E-value=0.0029  Score=53.35  Aligned_cols=214  Identities=15%  Similarity=0.091  Sum_probs=127.6

Q ss_pred             eecCCccccE-EEEecCCCceEEEecCCc---cCCCccceEEEE-ECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeC---
Q psy519           18 SFKPETVEDV-LANLESQKNLQSRYLPYY---TSGHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQMYPLRIFVG---   89 (351)
Q Consensus        18 ~~sp~~~~~~-l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~-~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---   89 (351)
                      .|.|+  ... +.+--..+.|.-|+..++   ...+...+.++. ....+.++++..  .+.+++.+++..+..+..   
T Consensus        31 ~w~~~--~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPD--RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCC--CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            56777  554 444445677888887644   222233333333 344445555443  355566655544222211   


Q ss_pred             --CCCCeEEEEEeCCCCEEEEEeC-----------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           90 --HKQDVTCARFHPKITYIGTGSY-----------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        90 --~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                        .....+.....|+|.+.++...           -|.++.+|. .+...+.+..+-..-..++||||++.++.+.+.  
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~--  183 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP--  183 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC--
Confidence              1234567888899887665443           133555554 466666666555566789999999998887651  


Q ss_pred             CCeEEEEEccC--C----c-eeEEeccCCCCEEEEEECCCCcEEEEEcCCC-eEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          157 DKAVRLWSITD--G----A-SVRVFSDHVSPVLSIAFSPCGKYLASGGEDG-LVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       157 d~~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                      .+.|.-|++..  +    + ....+....+..-.++...+|.+.+++..+| .|..|+.. ++.+..+.++. ..+.+++
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~  261 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPA  261 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccce
Confidence            47888887752  1    1 1122222344555677788888776555444 89999987 99999887654 5677777


Q ss_pred             EcC-CCCEEEEEe
Q psy519          229 WSV-TGETLVTGS  240 (351)
Q Consensus       229 ~~~-~~~~l~~~~  240 (351)
                      |-- +.+.|++.+
T Consensus       262 FgG~~~~~L~iTs  274 (307)
T COG3386         262 FGGPDLNTLYITS  274 (307)
T ss_pred             EeCCCcCEEEEEe
Confidence            743 445554443

>KOG4649|consensus

Probab=98.18  E-value=0.0016  Score=51.89  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  144 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  144 (351)
                      +.|+..+.+.--|.++|+.+..-. -..++.+-+.- -|++++.|...|.+++.+..+|.....+.....-=......++
T Consensus        27 ~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~  104 (354)
T KOG4649|consen   27 VIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD  104 (354)
T ss_pred             EEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC
Confidence            788889999999999988765432 22233332222 3678999999999999999999888877643322233556779


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      +..+..++.   |+..+..|.++...+...+-..+...+-+..|-...|+.+...|.+.--..+
T Consensus       105 ~glIycgsh---d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  105 GGLIYCGSH---DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             CceEEEecC---CCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            999999999   9999999999998888876555444555666733334444445555444433

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.14  E-value=0.0049  Score=54.63  Aligned_cols=185  Identities=10%  Similarity=0.011  Sum_probs=97.7

Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-------ccCCCCeEEEEEccC
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-------SDHVSPVLSIAFSPC  144 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~  144 (351)
                      .|+||+.. |+.+..+.-..+.+.++.|..+.. |++...||.+++||+. |+....+       .-....+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            58889865 455555543347899999988655 4455689999999986 3331111       111122222333335


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCc-eeEEec---cCCC------CEE-EEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGA-SVRVFS---DHVS------PVL-SIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~---~~~~------~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      |-.+++  .   ++.+.+.+--... ..+.+.   ....      ... ...++.+....+....++.+.+.+-...+. 
T Consensus       139 GivvLt--~---~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-  212 (410)
T PF04841_consen  139 GIVVLT--G---NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-  212 (410)
T ss_pred             CEEEEC--C---CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence            533343  2   4444444321111 111111   0000      000 022333444444444445555333222111 


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEecC
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPV  269 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~  269 (351)
                          ....+++..++.||+++++|.-..+|.+.+....-.+....      .....+.|.-+
T Consensus       213 ----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  213 ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             ----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence                12346899999999999999999999999987655544433      23345556544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=0.0055  Score=54.49  Aligned_cols=114  Identities=23%  Similarity=0.244  Sum_probs=79.9

Q ss_pred             eEEEEEcc-CCCEEEEEec-CCCCCe----EEEEEccCCceeEE---eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          136 VLSIAFSP-CGKYLASGGT-GSYDKA----VRLWSITDGASVRV---FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       136 i~~~~~~~-~~~~l~~~~~-~~~d~~----i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      ..++.|+- +...+.+... .+.+|.    -.+|++..++....   --.....+.+++++|+...++.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35677776 4445554432 111222    45666654432111   114667899999999999999999999999999


Q ss_pred             cCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          207 LTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ...+.....   ...-.+..++|+|+|.++++|+..|.+.+||+.-
T Consensus       288 ~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  288 TTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            876533322   3345678999999999999999999999999853

>KOG4640|consensus

Probab=98.10  E-value=2.7e-05  Score=68.83  Aligned_cols=95  Identities=18%  Similarity=0.293  Sum_probs=81.9

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEE-EEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVL-SIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      ...+.-+.|+|.-..+|++..   +|.+.+.-+. .+.+..+.-+..+++ +++|.|||+.+++|-.||.|++.|..++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~---~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTE---KGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheecc---CCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            456788999999999999998   9999999887 777888876777777 99999999999999999999999999998


Q ss_pred             EEEEeeccCCCCEEEEEEcC
Q psy519          212 VISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~  231 (351)
                      .+..+.......|.++.|++
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            88875555567888888864

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.05  E-value=0.00035  Score=64.41  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe------CCC--cEEEEeCCCCceeEEeccCCCCeEEEEE
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS------YDK--AVRLWSITDGASVRVFSDHVSPVLSIAF  141 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~  141 (351)
                      +|.+.-.+-..-.++.-..+....+...+++|+|+.++...      .|.  .+.+++.. +.......+  .......|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence            55555443222222222223334678899999999887665      243  45555642 333222222  23788999


Q ss_pred             ccCCCEEEEEecC---------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE---EEcCC
Q psy519          142 SPCGKYLASGGTG---------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT---HELTT  209 (351)
Q Consensus       142 ~~~~~~l~~~~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~  209 (351)
                      +|+|..+++...+         ...+.+.+.++..+....   .....|..+.|+|||+.++... +|.|++   -....
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            9999888777531         012334444554443322   2345799999999999888766 467776   34334


Q ss_pred             CcE-E---EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          210 GRV-I---SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       210 ~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      |.. +   ..+.......+.++.|..++.++ ++..++...+|.+
T Consensus       481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            431 1   11211122346889999998855 5555544444543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.02  E-value=0.0064  Score=52.25  Aligned_cols=170  Identities=12%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             CcEEEEeCCCC----eeeEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEec-cCCCCeEEEEEc
Q psy519           71 TTARLWSLEQM----YPLRIF--VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFS-DHVSPVLSIAFS  142 (351)
Q Consensus        71 ~~i~vw~~~~~----~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~i~~~~~~  142 (351)
                      |.|.++++.+.    ..+..+  ....++|.+++-. ++. |+.+. ++.|.+|++...+ ....-. .....+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            88999999884    122222  2346789888776 344 54443 5889999998777 333222 12335555555 


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccC-CceeEEec--cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC-------C--
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITD-GASVRVFS--DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT-------G--  210 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~--  210 (351)
                       .++++++|..   ...+.++..+. +..+..+.  .....+.++.+-++++.++++..+|.+.++....       +  
T Consensus       138 -~~~~I~vgD~---~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~  213 (321)
T PF03178_consen  138 -FKNYILVGDA---MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDP  213 (321)
T ss_dssp             -ETTEEEEEES---SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTT
T ss_pred             -cccEEEEEEc---ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccc
Confidence             4679999887   78888875554 23233332  2344578888886667999999999999988752       1  


Q ss_pred             cEEEEeeccCCCCEEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q psy519          211 RVISRFHLQEHEPVTSL---VWSV--TGE------TLVTGSLTGTVQFY  248 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~i~  248 (351)
                      +............|+++   ++.|  .+.      .++.++.+|.|...
T Consensus       214 ~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  214 KLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             BEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            22222223344567777   4444  121      36677778877743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621|consensus

Probab=98.02  E-value=0.0002  Score=64.35  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             CccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe-eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q psy519           49 HDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF-VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV  126 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  126 (351)
                      +...|.--++...+++ +.|+.-|.+++|+-..++....- .+....+.....+++..++|.|+..|.|.++.+..+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            4455555556667777 88999999999998876543222 223445566677888889999999999999988764332


Q ss_pred             EE------eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC----ceeEEeccCCCCEEEEEECCCCcEEEEE
Q psy519          127 RV------FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG----ASVRVFSDHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       127 ~~------~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~  196 (351)
                      ..      -+.|+..|++++|++++..+++|..   .|.|.+-.+...    -..+.+....+.|..+.+. ++..|++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~---~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt  187 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS---QGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST  187 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCC---CceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence            11      1237889999999999999999988   899998887662    1122233345677777775 44444443


Q ss_pred             cCCCeEEEEEcCC
Q psy519          197 GEDGLVLTHELTT  209 (351)
Q Consensus       197 ~~dg~i~i~d~~~  209 (351)
                      .. .. .++++..
T Consensus       188 l~-r~-~Lc~tE~  198 (726)
T KOG3621|consen  188 LT-RC-ILCQTEA  198 (726)
T ss_pred             hh-hh-heeecch
Confidence            33 22 3455543

>KOG4640|consensus

Probab=97.97  E-value=5.9e-05  Score=66.79  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeE-EEEEccCCCEEEEEecCCCCCeEEEEEccCCc
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL-SIAFSPCGKYLASGGTGSYDKAVRLWSITDGA  169 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~  169 (351)
                      ...+.-+.|+|.-.++|.+..+|.+.+..+. .+.+.++.-+...++ +++|.|||+.+++|-.   ||+|++.|..++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccCCC
Confidence            3457789999999999999999999999987 677788876666676 9999999999999999   9999999999988


Q ss_pred             eeEEe-ccCCCCEEEEEECC
Q psy519          170 SVRVF-SDHVSPVLSIAFSP  188 (351)
Q Consensus       170 ~~~~~-~~~~~~i~~~~~~~  188 (351)
                      .+... .....+|..+.|+|
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            77663 23456778888863

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.0039  Score=50.43  Aligned_cols=205  Identities=15%  Similarity=0.167  Sum_probs=124.5

Q ss_pred             CeEEEEEeCCC-CEEEEEeCCCc-EEEEeCCCCceeEEeccCCC--CeEEEEEccCCCEEEEEecC--CCCCeEEEEEcc
Q psy519           93 DVTCARFHPKI-TYIGTGSYDKA-VRLWSITDGASVRVFSDHVS--PVLSIAFSPCGKYLASGGTG--SYDKAVRLWSIT  166 (351)
Q Consensus        93 ~i~~i~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~--~~d~~i~i~d~~  166 (351)
                      ....++++|.. .-++.+-.-|+ ..++|....+....+...++  .--.=.|||||.+|+..-..  ..-|.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            34467787743 34555555554 56889887776665533222  11224699999999876431  113779999998


Q ss_pred             CC-ceeEEeccCCCCEEEEEECCCCcEEEEEcC------------------CCeEEEEEcCCCcEEEEeecc---CCCCE
Q psy519          167 DG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGE------------------DGLVLTHELTTGRVISRFHLQ---EHEPV  224 (351)
Q Consensus       167 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~---~~~~v  224 (351)
                      .+ +.+.++..|.-....+.|.+||+.++.+..                  .-++.+.|..+|+.+.+..++   +.-.+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            64 556677778777889999999999887743                  123455566667666655444   22468


Q ss_pred             EEEEEcCCCCEEEEEeCCC----------------eEEEEeCCCCceeee-eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          225 TSLVWSVTGETLVTGSLTG----------------TVQFYGWPSASKIGI-GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg----------------~i~i~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ..++..+||..++.+-..|                -+.+.+++..+.... ..+-+++.+.+...++..+..|  ...-+
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G--N~~vi  306 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG--NRAVI  306 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC--CeEEE
Confidence            8888888888666543322                122222222111111 3444667766555555444444  35678


Q ss_pred             eeceeCceEEEe
Q psy519          288 MHEIVGPVVVVE  299 (351)
Q Consensus       288 ~~~~~g~~~~~~  299 (351)
                      |+..+|.+....
T Consensus       307 ~da~tG~vv~~a  318 (366)
T COG3490         307 WDAATGAVVSEA  318 (366)
T ss_pred             EEcCCCcEEecc
Confidence            888888865443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.90  E-value=0.0023  Score=59.11  Aligned_cols=185  Identities=14%  Similarity=0.074  Sum_probs=101.1

Q ss_pred             CccceEEEEECCCCcE-EEEe------CCC--cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-------
Q psy519           49 HDMTVWSVEACSKGLA-LTGS------RDT--TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD-------  112 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~------~d~--~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------  112 (351)
                      ....+...+.+|+|.. +...      .|.  .|.+++.. +.......+  ...+.-.|+|+|+.+++....       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            3346788999999977 2222      233  45555653 222222232  237888999998877776532       


Q ss_pred             -----CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE---EEccCCce-e---EEec-cCCC
Q psy519          113 -----KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL---WSITDGAS-V---RVFS-DHVS  179 (351)
Q Consensus       113 -----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i---~d~~~~~~-~---~~~~-~~~~  179 (351)
                           +.+.+.+++.++...   .....|..+.|||||..++...    ++.|++   -....|.. +   ..+. ....
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                 233333444433322   2356799999999999998875    567777   34334431 1   1122 2233


Q ss_pred             CEEEEEECCCCcEEEEEcCCCeEEEEEcC-CCcEEEEeec-cCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          180 PVLSIAFSPCGKYLASGGEDGLVLTHELT-TGRVISRFHL-QEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      .+..+.|.+++.++ ++..++...+|.+. .|.....+.. ....++..++=+++  .++....+|.+.
T Consensus       498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            45789999988855 54444444444432 1222221110 01245666665542  344555555333

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.00084  Score=63.08  Aligned_cols=135  Identities=14%  Similarity=0.100  Sum_probs=94.7

Q ss_pred             eCCCcEEEEeCCCCeeeEEeeCCCCC-eEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCc--eeEE-e--ccCCCCe
Q psy519           68 SRDTTARLWSLEQMYPLRIFVGHKQD-VTCARFHP-----KITYIGTGSYDKAVRLWSITDGA--SVRV-F--SDHVSPV  136 (351)
Q Consensus        68 ~~d~~i~vw~~~~~~~~~~~~~~~~~-i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--~~~~~~i  136 (351)
                      .....|+-.|++.|+.+..+..+... |..++-..     ....-+.|-.+..++.||++-..  .+.. .  -......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34578999999999999999877654 55443221     12345667778899999998643  2211 1  1234567


Q ss_pred             EEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          137 LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      .|++-+.+| +||+|+.   +|.|++||--..+....+.+...||..++.+.||+++++.+. ..+.+++.
T Consensus       581 s~~aTt~~G-~iavgs~---~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSN---KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeC---CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            788887666 7788888   999999994322333445667889999999999999888775 45667765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.79  E-value=0.0011  Score=62.33  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=91.5

Q ss_pred             CCCcEEEEeCCCCceeEEeccCCCC-eEEEEEcc-----CCCEEEEEecCCCCCeEEEEEccCCc-eeEEec----cCCC
Q psy519          111 YDKAVRLWSITDGASVRVFSDHVSP-VLSIAFSP-----CGKYLASGGTGSYDKAVRLWSITDGA-SVRVFS----DHVS  179 (351)
Q Consensus       111 ~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~----~~~~  179 (351)
                      ....|+-.|+..|+.+.....+... |..++-..     .....++|-.   +..+..||.|-.. .+..-.    ....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEEC---CCceEEeccCCCCCceeeccccccccCC
Confidence            4578999999999999988766543 55544321     1234455556   8899999998642 222111    2334


Q ss_pred             CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      ...+++-+.+| +||+|+.+|.|++||- .+..-++.-..-..+|..|..+.||+++++.+. ..+.+++.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            56777777555 6899999999999994 444333332233579999999999999887764 57777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.76  E-value=0.019  Score=48.45  Aligned_cols=255  Identities=12%  Similarity=0.061  Sum_probs=146.5

Q ss_pred             CceEEEecCCc-cCC--CccceEEEEECCCCcE-EEE----------eCCCcEEEEeCCCCeeeEEeeCCCC-------C
Q psy519           35 KNLQSRYLPYY-TSG--HDMTVWSVEACSKGLA-LTG----------SRDTTARLWSLEQMYPLRIFVGHKQ-------D   93 (351)
Q Consensus        35 ~~i~i~~~~~~-~~~--~~~~i~~~~~~~~~~~-~~~----------~~d~~i~vw~~~~~~~~~~~~~~~~-------~   93 (351)
                      +.++++|.+.. ..+  ..+-.-.+..+|+++. .++          -..-.|.+||.++-++...+.-...       .
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            46777777665 111  1122223567899876 332          2345699999999877665432211       1


Q ss_pred             eEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-CCce
Q psy519           94 VTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-DGAS  170 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-~~~~  170 (351)
                      ...++++.|++++++...  .-+|.+.|+..++.+..+.. .+ +..+--++. +-+.+-+.   ||.+.-..+. .|+.
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~~-~~F~~lC~---DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSGN-RGFSMLCG---DGSLLTVTLDADGKE  170 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEET-TEEEEEET---TSCEEEEEETSTSSE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEecCC-CceEEEec---CCceEEEEECCCCCE
Confidence            234678889988877543  45799999999988887753 22 222222222 34555556   9999999987 4554


Q ss_pred             eEEe----ccCCCCEE-EEEECCCCcEEEEEcCCCeEEEEEcCCCcEE--EEeeccC------C---CCEEEEEEcCCCC
Q psy519          171 VRVF----SDHVSPVL-SIAFSPCGKYLASGGEDGLVLTHELTTGRVI--SRFHLQE------H---EPVTSLVWSVTGE  234 (351)
Q Consensus       171 ~~~~----~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~------~---~~v~~~~~~~~~~  234 (351)
                      ....    .....++. .-.+...+..++--+.+|.|+--|+......  ..+....      .   +...-+++++..+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            3221    11222222 3344445555555778899998888765422  2222111      0   2345678887666


Q ss_pred             EEEEEeC---C-------CeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          235 TLVTGSL---T-------GTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       235 ~l~~~~~---d-------g~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      .|++.-.   +       ..|.++|+.+++++..    ..+.++.++.+.+-+.++.+. ....+.+++..+|+..
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EE
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEE
Confidence            6655321   1       2689999999998865    455688999988865554433 2246788888888744

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.74  E-value=0.045  Score=52.32  Aligned_cols=197  Identities=12%  Similarity=0.066  Sum_probs=122.0

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCC--------CeEEEEEeC----------------CCCEEEEEeCCCcEE
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ--------DVTCARFHP----------------KITYIGTGSYDKAVR  116 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~--------~i~~i~~~~----------------~~~~l~~~~~dg~i~  116 (351)
                      ++.+..++.++.|.-.|..+|+.+..+.....        ..+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45667778889999999999998887753321        122333321                234788888999999


Q ss_pred             EEeCCCCceeEEeccCCCCe-------------EEEEEcc--CCCEEEEEecCC-------CCCeEEEEEccCCceeEEe
Q psy519          117 LWSITDGASVRVFSDHVSPV-------------LSIAFSP--CGKYLASGGTGS-------YDKAVRLWSITDGASVRVF  174 (351)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~~~-------~d~~i~i~d~~~~~~~~~~  174 (351)
                      -.|.++|+.+..+.. .+.+             ..+.-.|  .+..+++++...       .+|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876632 1111             0111122  244566664211       2588999999999987765


Q ss_pred             ccC---------CC--------CE-EEEEECCCCcEEEEEc------------------CCCeEEEEEcCCCcEEEEeec
Q psy519          175 SDH---------VS--------PV-LSIAFSPCGKYLASGG------------------EDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       175 ~~~---------~~--------~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      ...         .+        .+ ..+++.|+...++.+.                  ..+.|.-.|.++|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            421         00        01 2345555444444422                  134567778888887766654


Q ss_pred             cCCC--------CEEEEEEcC-CCC---EEEEEeCCCeEEEEeCCCCceeee
Q psy519          219 QEHE--------PVTSLVWSV-TGE---TLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       219 ~~~~--------~v~~~~~~~-~~~---~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .++.        +..-+.+.. +|+   .++.++.+|.++++|-++++.+-.
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            3321        122223333 553   788999999999999999987753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=0.00014  Score=39.71  Aligned_cols=39  Identities=31%  Similarity=0.566  Sum_probs=34.2

Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS  119 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  119 (351)
                      +++...+..|...+.++.|++++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.71  E-value=0.037  Score=50.87  Aligned_cols=194  Identities=12%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeE----------EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHK-QDVT----------CARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~----------~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      ++.++.++.++.|+-+|.++++.+..+.... ..+.          .+++.  +..++.++.++.+.-+|.++|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            5666777888899999999999887764321 1111          12222  346777888999999999999988766


Q ss_pred             ccCCCC-eEEEEEcc--CCCEEEEEecC---CCCCeEEEEEccCCceeEEeccCCC------------------------
Q psy519          130 SDHVSP-VLSIAFSP--CGKYLASGGTG---SYDKAVRLWSITDGASVRVFSDHVS------------------------  179 (351)
Q Consensus       130 ~~~~~~-i~~~~~~~--~~~~l~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~------------------------  179 (351)
                      ...... -..+.-+|  .+..++++...   ..++.|..+|.++|+.+-.+.....                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421110 01111122  13345554321   1268999999999987765432110                        


Q ss_pred             -------CE-EEEEECCCCcEEEEEcCC-----C-----------eEEEEEcCCCcEEEEeeccCCC--------CEEEE
Q psy519          180 -------PV-LSIAFSPCGKYLASGGED-----G-----------LVLTHELTTGRVISRFHLQEHE--------PVTSL  227 (351)
Q Consensus       180 -------~i-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~--------~v~~~  227 (351)
                             .+ ..+++.|...+++.+..+     +           .|.-.|+++|+..-.+...++.        ...-+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   11 134666666666666522     2           5777888999887666543331        22223


Q ss_pred             EEcCCCC---EEEEEeCCCeEEEEeCCCCcee
Q psy519          228 VWSVTGE---TLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       228 ~~~~~~~---~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      .+..+|+   .++.+..+|.+++.|-.+++.+
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            3334666   7788999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.71  E-value=0.0068  Score=41.98  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             eEEEEEcc---CC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          136 VLSIAFSP---CG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       136 i~~~~~~~---~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      |++|++..   +| +.|++|+.   |..|++|+  ..+.+.++.. ...+..++-... ..|+.+..+|+|-+|+-.  +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~---D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSD---DFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--Q   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecC---CcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--c
Confidence            55666654   32 57888888   99999998  4466777754 345777776655 668888899999999852  2


Q ss_pred             EEEEeeccCCCCEEEEEEcC-CC---CEEEEEeCCCeEEE
Q psy519          212 VISRFHLQEHEPVTSLVWSV-TG---ETLVTGSLTGTVQF  247 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~i  247 (351)
                      .+  +..+....+.++++.. ++   .-|++|-.+|.|-+
T Consensus        73 Rl--WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 RL--WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ee--eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            22  2334445566666544 32   36888888888753

>KOG4441|consensus

Probab=97.70  E-value=0.014  Score=53.99  Aligned_cols=224  Identities=14%  Similarity=0.106  Sum_probs=120.3

Q ss_pred             ccEEEEecCCC------ceEEEecCCc------cCCCccceEEEEECCCCcEEEEeCC------CcEEEEeCCCCeeeE-
Q psy519           25 EDVLANLESQK------NLQSRYLPYY------TSGHDMTVWSVEACSKGLALTGSRD------TTARLWSLEQMYPLR-   85 (351)
Q Consensus        25 ~~~l~~~~~~~------~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~d------~~i~vw~~~~~~~~~-   85 (351)
                      +.+++.|+..+      .+..||....      .......-.+++...+..+++|+.|      .++..||..+++-.. 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            66778887763      5677777766      1112223344555554445999998      347778887665332 


Q ss_pred             -EeeCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeEEeccCCCCeEEEEE-ccCCCEEEEEecCCCC-
Q psy519           86 -IFVGHKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITDGASVRVFSDHVSPVLSIAF-SPCGKYLASGGTGSYD-  157 (351)
Q Consensus        86 -~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~d-  157 (351)
                       .+........ ++ .-+|...++|+.||     ++-.||..+.+....-.-.. ...+.+. .-+|...++|+..... 
T Consensus       365 a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  365 APMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             CCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcc
Confidence             1111111211 11 22678888999886     47788887765432221111 2222222 2267777887752222 


Q ss_pred             --CeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcCCC-----eEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          158 --KAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGEDG-----LVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       158 --~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                        ..+..||..+++  .+..+........ ++.- ++.+.++|+.|+     .+..||..+.+-...-.......-..++
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence              568889887653  2222222222222 2222 678888888776     3777888776654432122221111122


Q ss_pred             EcCCCCEEEEEeCCC-----eEEEEeCCCCc
Q psy519          229 WSVTGETLVTGSLTG-----TVQFYGWPSAS  254 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg-----~i~i~~~~~~~  254 (351)
                      . -+++..++|+.||     +|..||..+.+
T Consensus       520 ~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  520 V-LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             E-ECCEEEEEecccCccccceeEEcCCCCCc
Confidence            1 2566677777775     56677666553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0039  Score=43.12  Aligned_cols=100  Identities=12%  Similarity=-0.041  Sum_probs=70.8

Q ss_pred             eEEeeecC-C-ccccEEEEecCCCceEEEecCCc--cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeC
Q psy519           14 FIQNSFKP-E-TVEDVLANLESQKNLQSRYLPYY--TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG   89 (351)
Q Consensus        14 v~~~~~sp-~-~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~   89 (351)
                      |.++++.. + +..+.|++|+.|..|++|+-...  .....+.|.++.-...++++.+..+|+|-+|+-.  +.+...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKS   79 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKS   79 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeecc
Confidence            56766665 2 11368999999999999998766  3445678889988888899999999999999853  33444443


Q ss_pred             CCCCeEEEEEeC-C--C-CEEEEEeCCCcEE
Q psy519           90 HKQDVTCARFHP-K--I-TYIGTGSYDKAVR  116 (351)
Q Consensus        90 ~~~~i~~i~~~~-~--~-~~l~~~~~dg~i~  116 (351)
                      .. .+.++.+.. +  | .-|++|-.+|.|-
T Consensus        80 K~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 KN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33 366666543 2  2 3677887788764

>smart00320 WD40 WD40 repeats

Probab=97.66  E-value=0.00021  Score=38.95  Aligned_cols=38  Identities=42%  Similarity=0.732  Sum_probs=33.0

Q ss_pred             ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      +....+..|...+.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079|consensus

Probab=97.66  E-value=0.00084  Score=63.45  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             ccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i   97 (351)
                      +..++.|++.|.+-..|+..+      -..-.++|++++|+.+|.+ +.|-.+|.|.+||+..++..+.+..|..+.+++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            557888889999988888775      2234689999999999998 788889999999999999998888777666554


Q ss_pred             E---EeCCCCEEEEEeCCCcEEEEeC
Q psy519           98 R---FHPKITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        98 ~---~~~~~~~l~~~~~dg~i~i~d~  120 (351)
                      -   +..++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4   3445667888777776  4543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.022  Score=46.30  Aligned_cols=230  Identities=12%  Similarity=0.104  Sum_probs=139.1

Q ss_pred             cceEEEEECCCCcE--EEEeCCCc-EEEEeCCCCeeeEEeeCCCCCe--EEEEEeCCCCEEEEEeCC-----CcEEEEeC
Q psy519           51 MTVWSVEACSKGLA--LTGSRDTT-ARLWSLEQMYPLRIFVGHKQDV--TCARFHPKITYIGTGSYD-----KAVRLWSI  120 (351)
Q Consensus        51 ~~i~~~~~~~~~~~--~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~d-----g~i~i~d~  120 (351)
                      .....++|+|.-..  +.+-.-|+ ..++|.++.+...++...++.-  -.=.|||||.+|+..-.|     |.|-+||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            34456788887654  44445454 6789998887766554333221  123589999999876443     78999998


Q ss_pred             CCC-ceeEEeccCCCCeEEEEEccCCCEEEEEecC---------------CCCCeEEEEEccCCceeEEec----cCCCC
Q psy519          121 TDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGTG---------------SYDKAVRLWSITDGASVRVFS----DHVSP  180 (351)
Q Consensus       121 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---------------~~d~~i~i~d~~~~~~~~~~~----~~~~~  180 (351)
                      +.+ +.+..+..|.-....+.+.+||+.++.+.-+               +..-.+.+.|..+|+.+.+..    .+.-.
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            753 3456677777777889999999999887421               123345566655665544322    24456


Q ss_pred             EEEEEECCCCcEEEEEcCCCe-----EEEEEcCCCcEEEEeeccCC------CCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy519          181 VLSIAFSPCGKYLASGGEDGL-----VLTHELTTGRVISRFHLQEH------EPVTSLVWSVTGETLVTGSL-TGTVQFY  248 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~-dg~i~i~  248 (351)
                      ++.++..+||..++.+-..|.     -.+=-...++.+..+....+      .-|-+++.+.+..+++..+- .+...+|
T Consensus       228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~  307 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW  307 (366)
T ss_pred             eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence            888888888876655432221     11111223444443332221      24677888766666655554 5678999


Q ss_pred             eCCCCceeeeeeccee-EEecCCceeeeeeccc
Q psy519          249 GWPSASKIGIGVYPRC-AAQPVGFEAATLAANS  280 (351)
Q Consensus       249 ~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~  280 (351)
                      |..++..+....+..+ -+-+...-+++.+..|
T Consensus       308 da~tG~vv~~a~l~daaGva~~~~gf~vssg~G  340 (366)
T COG3490         308 DAATGAVVSEAALPDAAGVAAAKGGFAVSSGQG  340 (366)
T ss_pred             EcCCCcEEecccccccccceeccCceEEecCCc
Confidence            9999999887666543 2334444444444444

>PHA02713 hypothetical protein; Provisional

Probab=97.65  E-value=0.016  Score=53.68  Aligned_cols=186  Identities=6%  Similarity=0.013  Sum_probs=94.5

Q ss_pred             CCcE-EEEeCC------CcEEEEeCCCCeeeE--EeeCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCcee
Q psy519           61 KGLA-LTGSRD------TTARLWSLEQMYPLR--IFVGHKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITDGASV  126 (351)
Q Consensus        61 ~~~~-~~~~~d------~~i~vw~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  126 (351)
                      ++.+ +.||.+      ..+..||+.+.+-..  .+....... +++ .-+++..+.|+.++     ++..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            4455 788754      347788887664321  111111122 222 22577778888754     4888998876543


Q ss_pred             EE--eccCCCCeEEEEEccCCCEEEEEecCCC--------------------CCeEEEEEccCCc--eeEEeccCCCCEE
Q psy519          127 RV--FSDHVSPVLSIAFSPCGKYLASGGTGSY--------------------DKAVRLWSITDGA--SVRVFSDHVSPVL  182 (351)
Q Consensus       127 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~--------------------d~~i~i~d~~~~~--~~~~~~~~~~~i~  182 (351)
                      ..  +.........+++  +|...+.|+....                    -..+..||.++.+  .+..+....... 
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-  457 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-  457 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-
Confidence            21  1111111122222  6777777765110                    1347788876642  222221111111 


Q ss_pred             EEEECCCCcEEEEEcCC------CeEEEEEcCC-CcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCC
Q psy519          183 SIAFSPCGKYLASGGED------GLVLTHELTT-GRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLTG--TVQFYGWPS  252 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~  252 (351)
                      +++. -++++.+.|+.+      ..+..||..+ .+-...-..+.. .....+.+  ++++.++|+.+|  .+..||..+
T Consensus       458 ~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        458 GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            2222 257777777653      2467899886 443322222222 12222222  678888898887  677777766


Q ss_pred             Cc
Q psy519          253 AS  254 (351)
Q Consensus       253 ~~  254 (351)
                      .+
T Consensus       535 ~~  536 (557)
T PHA02713        535 YE  536 (557)
T ss_pred             cc
Confidence            54

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.031  Score=47.30  Aligned_cols=200  Identities=15%  Similarity=0.084  Sum_probs=119.3

Q ss_pred             EECCCCc-E-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc---
Q psy519           57 EACSKGL-A-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD---  131 (351)
Q Consensus        57 ~~~~~~~-~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  131 (351)
                      .|.++.. + .+--..+.|.-|+..+++.. .+... ..+.++..-..+..|+++.  ..+.+++.+++.....+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            4566655 3 55556788889988866532 33322 2334444433444454432  3466777766555333211   


Q ss_pred             --CCCCeEEEEEccCCCEEEEEec-----C---CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC
Q psy519          132 --HVSPVLSIAFSPCGKYLASGGT-----G---SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG  200 (351)
Q Consensus       132 --~~~~i~~~~~~~~~~~l~~~~~-----~---~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg  200 (351)
                        ...........|+|.+.++...     .   ..-|.++.+|. .+...+.+..+-...+.++||||++.|+.+-. .+
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence              1234567888899887665432     0   11244555554 46666666555555678999999987776654 57


Q ss_pred             eEEEEEcCC--C----cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeeeecc
Q psy519          201 LVLTHELTT--G----RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-TVQFYGWPSASKIGIGVYP  262 (351)
Q Consensus       201 ~i~i~d~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~  262 (351)
                      .|.-|++..  +    +....+.....+..-.++...+|.+.+++-.+| .|..|+.. ++++....++
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            888887752  1    111111112345677888888999886555554 99999988 8888765554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.57  E-value=0.036  Score=46.45  Aligned_cols=143  Identities=14%  Similarity=0.177  Sum_probs=91.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe------
Q psy519          102 KITYIGTGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF------  174 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~------  174 (351)
                      .++.|+.|+.+| ++++++.. .+......  ...|..+...|+-+.+++-+    |+.+.++++..-......      
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccc
Confidence            567899998888 99999833 33333332  34499999999888877764    899999998764333210      


Q ss_pred             --------ccCCCCEEEEE--ECCCC-cEEEEEcCCCeEEEEEcCCC-----cEEEEeeccCCCCEEEEEEcCCCCEEEE
Q psy519          175 --------SDHVSPVLSIA--FSPCG-KYLASGGEDGLVLTHELTTG-----RVISRFHLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       175 --------~~~~~~i~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                              ......+...+  -.+.+ .+|+++. ...|.+|.....     +..+.+.  -...+..++|.  ++.++.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEE
Confidence                    01222344444  11233 4455444 458888887653     3445554  34788999998  567777


Q ss_pred             EeCCCeEEEEeCCCCceee
Q psy519          239 GSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~~  257 (351)
                      |.. ....+.|+.++....
T Consensus       154 ~~~-~~f~~idl~~~~~~~  171 (275)
T PF00780_consen  154 GTS-KGFYLIDLNTGSPSE  171 (275)
T ss_pred             EeC-CceEEEecCCCCceE
Confidence            764 458888988765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.023  Score=46.44  Aligned_cols=163  Identities=14%  Similarity=0.169  Sum_probs=105.9

Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .+-...++++.|+|+.+.|++......-.++=-.+|+.++.+.-. -.....+++..++++.++--.   ++.+.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---~~~l~~~~vd  158 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---DRALYLFTVD  158 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---cceEEEEEEc
Confidence            345556999999999998888887777777776788888876421 233456888877777776555   8888888776


Q ss_pred             CCceeEEe----------ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cC-------CCCEEEE
Q psy519          167 DGASVRVF----------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QE-------HEPVTSL  227 (351)
Q Consensus       167 ~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~-------~~~v~~~  227 (351)
                      ........          ...+.....++|.|....|..+-+-.-+.||.............  .+       -..+.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            54222111          11255677899999888888887777677776653321111100  00       0246778


Q ss_pred             EEcCC-CCEEEEEeCCCeEEEEeCCCC
Q psy519          228 VWSVT-GETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       228 ~~~~~-~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .|++. +.+|+.+.+++.+.-.|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            88874 455566666677777665543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.54  E-value=0.032  Score=45.39  Aligned_cols=158  Identities=9%  Similarity=0.015  Sum_probs=105.6

Q ss_pred             CeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeEEeccC-CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc
Q psy519           93 DVTCARFHPKITYIGTGSYDK--AVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA  169 (351)
Q Consensus        93 ~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~  169 (351)
                      -..++.|..++.++-+.+.-|  .|+.+|+.+++......-. .---..++... ++.....-.   ++...+||..+-+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk---~~~~f~yd~~tl~  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWK---EGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESS---SSEEEEEETTTTE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEec---CCeEEEEccccce
Confidence            346788877788888877766  7999999999876554321 22223455543 334444445   8999999999988


Q ss_pred             eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          170 SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       170 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      .+.++.- .+.-..++  .|++.|+.+.....++++|..+-+....+.....    ..++.+.|- +|...|-.=....|
T Consensus       122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            8888753 34567777  3677788777778899999988887777765433    356777775 67766666667889


Q ss_pred             EEEeCCCCceeee
Q psy519          246 QFYGWPSASKIGI  258 (351)
Q Consensus       246 ~i~~~~~~~~~~~  258 (351)
                      ...|..+|+....
T Consensus       198 ~~Idp~tG~V~~~  210 (264)
T PF05096_consen  198 VRIDPETGKVVGW  210 (264)
T ss_dssp             EEEETTT-BEEEE
T ss_pred             EEEeCCCCeEEEE
Confidence            9999999988865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.52  E-value=0.056  Score=47.53  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC-----------------CCEE-EEEe
Q psy519          179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT-----------------GETL-VTGS  240 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l-~~~~  240 (351)
                      ..+.+++.+|++++.++...-|.|.++|+.++..++.++..-+..+.=+.....                 ..+| +-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            457789999999999988888999999999887776554322221111111100                 1123 3356


Q ss_pred             CCCeEEEEeCCCCceeeeeec
Q psy519          241 LTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       241 ~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      .-|.|.||.++.+.++....+
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            678999999998887765433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.50  E-value=0.037  Score=45.04  Aligned_cols=183  Identities=12%  Similarity=0.044  Sum_probs=115.4

Q ss_pred             cceEEEEECCCCcE-EEEeCCC--cEEEEeCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q psy519           51 MTVWSVEACSKGLA-LTGSRDT--TARLWSLEQMYPLRIFVGHK-QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV  126 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~--~i~vw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  126 (351)
                      .-...+.|..+|.+ -+.+.-|  .|+.+|+++++......-.. .---.++...| +.....=.++...+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence            34456788777777 6666555  69999999998776554322 22234555533 44445567899999999999888


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC-----CCCEEEEEECCCCcEEEEEcCCCe
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH-----VSPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      ..+. ....=..++.  +++.|+....   ...|+.+|..+.+..+.++-.     -..+..+.|. +|...|=.=....
T Consensus       124 ~~~~-y~~EGWGLt~--dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFP-YPGEGWGLTS--DGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE--SSS--EEEE--CSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEe-cCCcceEEEc--CCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence            8875 3345566773  6777777655   678999998887766665432     1245567776 6776666666778


Q ss_pred             EEEEEcCCCcEEEEeecc--------------CCCCEEEEEEcCCCCEEEEEeC
Q psy519          202 VLTHELTTGRVISRFHLQ--------------EHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      |...|..+|+....+.+.              ...-.+.++|.|..+.|...+.
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            888899999888766321              1235789999987766555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=97.48  E-value=0.1  Score=49.69  Aligned_cols=240  Identities=8%  Similarity=-0.000  Sum_probs=123.8

Q ss_pred             cceEEeeecCCccccEEEEecCC-----CceEEEecCCcc--C-CCccceEEEEECCCCcE--EEEeCC-----CcEEEE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQ-----KNLQSRYLPYYT--S-GHDMTVWSVEACSKGLA--LTGSRD-----TTARLW   76 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~-----~~i~i~~~~~~~--~-~~~~~i~~~~~~~~~~~--~~~~~d-----~~i~vw   76 (351)
                      -.+..+.+||+  +++|+.+.+.     ..+++.++.++.  . .....-..++|.+|+..  ++...+     ..|+.+
T Consensus       127 ~~l~~~~~Spd--g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPD--NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCC--CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45667899999  9999876432     357888887651  1 11111246899998854  333222     468888


Q ss_pred             eCCCC--eeeEEeeCCCCCeE-EEEEeCCCCEEEEEeC---CCcEEEEeCC--CCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           77 SLEQM--YPLRIFVGHKQDVT-CARFHPKITYIGTGSY---DKAVRLWSIT--DGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        77 ~~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      ++.++  +....+........ .+..+.++++++..+.   ++.+.+++..  .++....+.........+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88887  33334443333333 2233447777655443   4578888853  3433222322222223332 3333343


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccC-C-CCEEEEEECCCCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDH-V-SPVLSIAFSPCGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVT  225 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~  225 (351)
                      +....+.....|...++........+-.+ . ..+..+.+. .+.++++...+|.-.++-+.. +..+..+.......+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~  362 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVT  362 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEe
Confidence            33332222344555566532222333333 2 367778877 345566666677655544332 2334443322222233


Q ss_pred             EEEEc--CCCC-EEEEEeC---CCeEEEEeCCCCce
Q psy519          226 SLVWS--VTGE-TLVTGSL---TGTVQFYGWPSASK  255 (351)
Q Consensus       226 ~~~~~--~~~~-~l~~~~~---dg~i~i~~~~~~~~  255 (351)
                      .+.++  +++. ++++.+.   -+.+..+|..+++.
T Consensus       363 ~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~  398 (686)
T PRK10115        363 WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER  398 (686)
T ss_pred             eecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence            33444  3433 4444333   47899999887653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.46  E-value=0.019  Score=51.39  Aligned_cols=150  Identities=9%  Similarity=0.078  Sum_probs=92.4

Q ss_pred             CCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC----CCEEEEEecCCCCCeEEEE
Q psy519           91 KQDVTCARFHPKITYIGTGS---YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC----GKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~~~~d~~i~i~  163 (351)
                      -.++.+++|. ||+.++...   .+|.+++=|   .+.+.    .-..|..+.|.|-    -..+++.-.   ...|.+|
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQH---kkhVtVW   87 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQH---KKHVTVW   87 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence            3478899997 566554432   234443332   12233    3356889999994    223444445   7899999


Q ss_pred             EccC-----CceeEEecc-C----CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          164 SITD-----GASVRVFSD-H----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       164 d~~~-----~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                      .+.-     ++.+..... .    .--...+.|+|....|++-.....-.+++++.....-+......+.|.+.+|.+||
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            9852     222222111 1    11124578999999988877666556777765554444555677899999999999


Q ss_pred             CEEEEEeCC-CeEEEEeCC
Q psy519          234 ETLVTGSLT-GTVQFYGWP  251 (351)
Q Consensus       234 ~~l~~~~~d-g~i~i~~~~  251 (351)
                      +.|+++-.. =.-++||-.
T Consensus       168 ~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CEEEEEeCCeEEEEEecCc
Confidence            988776433 245666643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.44  E-value=0.067  Score=46.60  Aligned_cols=190  Identities=12%  Similarity=0.106  Sum_probs=93.0

Q ss_pred             EEEeCCCcEEEEeCCC----CeeeEEeeC---CC----CCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeE
Q psy519           65 LTGSRDTTARLWSLEQ----MYPLRIFVG---HK----QDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVR  127 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~----~~~~~~~~~---~~----~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~  127 (351)
                      +-|-.++.|+|.|+.+    .+..+.+..   +.    .....+..-|+|+.++++-.      -|.+.++|-++.+...
T Consensus        92 ~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g  171 (461)
T PF05694_consen   92 LPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKG  171 (461)
T ss_dssp             EEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEE
T ss_pred             eeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccc
Confidence            4455788999999973    233333332   11    12233445678888877522      2568888888777666


Q ss_pred             EeccC---CCCeEEEEEccCCCEEEEEec-----------------CCCCCeEEEEEccCCceeEEeccCCC--CEEEEE
Q psy519          128 VFSDH---VSPVLSIAFSPCGKYLASGGT-----------------GSYDKAVRLWSITDGASVRVFSDHVS--PVLSIA  185 (351)
Q Consensus       128 ~~~~~---~~~i~~~~~~~~~~~l~~~~~-----------------~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~  185 (351)
                      .....   ...-+.+-|.|..+.+++..-                 +.+...+.+||+.+.+.++.+.-...  ....+.
T Consensus       172 ~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvR  251 (461)
T PF05694_consen  172 RWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVR  251 (461)
T ss_dssp             E--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEE
T ss_pred             eeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEE
Confidence            55432   234567888998888888752                 12457899999999999988865432  244566


Q ss_pred             EC--CCCcEEEEEc-CCCeEEEEEc-CCCcEE--EEeeccC------------------CCCEEEEEEcCCCCEEEEEeC
Q psy519          186 FS--PCGKYLASGG-EDGLVLTHEL-TTGRVI--SRFHLQE------------------HEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       186 ~~--~~~~~l~~~~-~dg~i~i~d~-~~~~~~--~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      |.  |+..+-++++ -.+.|..|-. ..++-.  +.+....                  ..-++.+..|.|.++|...+.
T Consensus       252 flH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W  331 (461)
T PF05694_consen  252 FLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW  331 (461)
T ss_dssp             E-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET
T ss_pred             ecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc
Confidence            65  4455444333 3445554433 333211  1111111                  134789999999999987766


Q ss_pred             -CCeEEEEeCCCCc
Q psy519          242 -TGTVQFYGWPSAS  254 (351)
Q Consensus       242 -dg~i~i~~~~~~~  254 (351)
                       .|.|+.||+....
T Consensus       332 ~~GdvrqYDISDP~  345 (461)
T PF05694_consen  332 LHGDVRQYDISDPF  345 (461)
T ss_dssp             TTTEEEEEE-SSTT
T ss_pred             cCCcEEEEecCCCC
Confidence             8999999998754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.42  E-value=0.052  Score=44.80  Aligned_cols=203  Identities=18%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             ceEEEEECCCCcE-EEEeCCCcEEEEeCC------CCee-eEEeeC-----CCCCeEEEEEeCCC------------CEE
Q psy519           52 TVWSVEACSKGLA-LTGSRDTTARLWSLE------QMYP-LRIFVG-----HKQDVTCARFHPKI------------TYI  106 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~~i~vw~~~------~~~~-~~~~~~-----~~~~i~~i~~~~~~------------~~l  106 (351)
                      .-+.|+++|.+.+ ++....+...+||..      ..+. +..+..     .....+.+.|+...            ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3467888888877 777777888888875      1111 222221     12356677776422            235


Q ss_pred             EEEeCCCcEEEEeCCCCce-----eEEec-cCCCCe-EEEEEcc--CCCEEEEEecCCCCCeEEEEEccCCceeEE---e
Q psy519          107 GTGSYDKAVRLWSITDGAS-----VRVFS-DHVSPV-LSIAFSP--CGKYLASGGTGSYDKAVRLWSITDGASVRV---F  174 (351)
Q Consensus       107 ~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~~i-~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~---~  174 (351)
                      +.+++||+|.-|...-+..     ...+. .....| ..+++..  .+++|..+.-.  +++|.+||-.-. ++..   +
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~--~g~IDVFd~~f~-~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR--QGRIDVFKGSFR-PPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC--CCceEEecCccc-cccCCCCc
Confidence            7788999999998533222     11222 112222 3455543  46677766542  789999985322 2211   1


Q ss_pred             ccCC-----C-----------CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcC------
Q psy519          175 SDHV-----S-----------PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSV------  231 (351)
Q Consensus       175 ~~~~-----~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~------  231 (351)
                      ....     .           .|+-..-.++++.=+.+..-|.|-+||+ +++.++++..... .....|+..|      
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            1000     0           0111111222222333444578999997 6788887743222 4567788766      


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .+.+|+---.||+|..||..+++.+..
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeee
Confidence            466776666699999999988876643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.38  E-value=0.065  Score=45.09  Aligned_cols=223  Identities=14%  Similarity=0.118  Sum_probs=108.8

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----c---CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe-e
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----T---SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY-P   83 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~---~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~-~   83 (351)
                      ...++.|..+   ..+++| ..+ +.+...+.+     .   ..-.+....+....++....++..|.|..=. +.++ -
T Consensus        63 ~l~~I~f~~~---~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN---EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTW  136 (302)
T ss_dssp             EEEEEEEETT---EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSE
T ss_pred             eEEEEEecCC---ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCe
Confidence            4667787644   344444 344 323333333     1   1112233334444444443344444433222 2222 1


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~  163 (351)
                      ..........+..+.-+++|++++++.......-||.-...-...-+.....|..|.|+|++.+.+++ .   .+.|+.=
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~---Gg~~~~s  212 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R---GGQIQFS  212 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T---TTEEEEE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C---CcEEEEc
Confidence            22233455678888889999999888766666678754332333333356889999999998877765 5   7888887


Q ss_pred             Ec-cCCceeEE----eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCEEEEEEcCCCCEE
Q psy519          164 SI-TDGASVRV----FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       164 d~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l  236 (351)
                      +. ...+....    .......+..++|.+++...++|+. |.+ +.....|+.-++...  .....+..+.|.+..+-+
T Consensus       213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred             cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence            72 11221111    1122234789999998888777764 433 456666765555443  223568899998766656


Q ss_pred             EEEeCCCeEEEE
Q psy519          237 VTGSLTGTVQFY  248 (351)
Q Consensus       237 ~~~~~dg~i~i~  248 (351)
                      +.| .+|.+.=|
T Consensus       291 ~lG-~~G~ll~~  301 (302)
T PF14870_consen  291 VLG-QDGVLLRY  301 (302)
T ss_dssp             EE--STTEEEEE
T ss_pred             EEC-CCcEEEEe
Confidence            555 67776544

>KOG2395|consensus

Probab=97.34  E-value=0.0061  Score=53.52  Aligned_cols=137  Identities=12%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEeCCCCce--eEEecc----
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-------YIGTGSYDKAVRLWSITDGAS--VRVFSD----  131 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~~~----  131 (351)
                      .++.....++-.|++.|+.+....-+.. |+-+.+.|+.+       .-+.|-.+..|+-||++-...  +..-.+    
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            4556667788889999999988887766 77778888543       224566688999999874322  211122    


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      ......|++-..+| ++++|+.   +|.|++||--..+....+++...+|..+..+.||+++++.+. ..+.+.++
T Consensus       429 ~k~nFsc~aTT~sG-~IvvgS~---~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  429 TKNNFSCFATTESG-YIVVGSL---KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             cccccceeeecCCc-eEEEeec---CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            22345666666554 7788888   999999996333444456778889999999999999887765 45666655

>KOG2079|consensus

Probab=97.29  E-value=0.00096  Score=63.09  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=76.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC
Q psy519          102 KITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP  180 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  180 (351)
                      .+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|..++.|-.   +|.|.+||+..++.++.+..+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcceeeeeecCCc
Confidence            3557888888899999988653 112222335689999999999999999988   999999999999999888877766


Q ss_pred             EEEE---EECCCCcEEEEEcCCCeEEEEEc
Q psy519          181 VLSI---AFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       181 i~~~---~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      ...+   .+..++..++++...|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5554   44446667888877775  5544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.28  E-value=0.11  Score=45.40  Aligned_cols=214  Identities=12%  Similarity=0.080  Sum_probs=101.3

Q ss_pred             ccEEEEec-CCCceEEEecCCc---------cC-------CCccceEEEEECCCCcE-EEE--eCC----CcEEEEeCCC
Q psy519           25 EDVLANLE-SQKNLQSRYLPYY---------TS-------GHDMTVWSVEACSKGLA-LTG--SRD----TTARLWSLEQ   80 (351)
Q Consensus        25 ~~~l~~~~-~~~~i~i~~~~~~---------~~-------~~~~~i~~~~~~~~~~~-~~~--~~d----~~i~vw~~~~   80 (351)
                      .++|+..+ .++.|++.|+.+.         ..       ..-.....+..-|+|.+ +++  ..+    |-+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45565554 7889999999865         00       01122333444578865 543  333    4588888888


Q ss_pred             CeeeEEeeCCC---CCeEEEEEeCCCCEEEEEeC--------------------CCcEEEEeCCCCceeEEeccCCC--C
Q psy519           81 MYPLRIFVGHK---QDVTCARFHPKITYIGTGSY--------------------DKAVRLWSITDGASVRVFSDHVS--P  135 (351)
Q Consensus        81 ~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~--~  135 (351)
                      .+.........   .--..+-|.|..+.++++..                    ..++.+||+.+.+.++++.-...  .
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            77776664322   23456778898888887743                    35899999999999988864322  2


Q ss_pred             eEEEEE--ccCCCEEEEEecCCCCCeEEEEEc-cCCc----eeEEecc----------C-------CCCEEEEEECCCCc
Q psy519          136 VLSIAF--SPCGKYLASGGTGSYDKAVRLWSI-TDGA----SVRVFSD----------H-------VSPVLSIAFSPCGK  191 (351)
Q Consensus       136 i~~~~~--~~~~~~l~~~~~~~~d~~i~i~d~-~~~~----~~~~~~~----------~-------~~~i~~~~~~~~~~  191 (351)
                      ...+.|  .|+..+-++++.-  ...|..|-- ..++    .+-.+..          .       ..-|+.+..|.|.+
T Consensus       247 pLEvRflH~P~~~~gFvg~aL--ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCAL--SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             eEEEEecCCCCccceEEEEec--cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            344555  4455554444321  455555543 3331    1222211          0       24578999999999


Q ss_pred             EEEEEc-CCCeEEEEEcCCCcE---EEEeeccC---------------CCCEEEEEEcCCCCEEEEEe
Q psy519          192 YLASGG-EDGLVLTHELTTGRV---ISRFHLQE---------------HEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       192 ~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~  240 (351)
                      +|..++ ..|.++.||+.+...   ..++.+..               .+...-+..|-||+.|...+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            998776 489999999986533   22222211               12345566777777776653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.27  E-value=0.016  Score=53.64  Aligned_cols=182  Identities=6%  Similarity=-0.056  Sum_probs=93.2

Q ss_pred             ccEEEEecCC------CceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCC-----cEEEEeCCCCeeeE
Q psy519           25 EDVLANLESQ------KNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDT-----TARLWSLEQMYPLR   85 (351)
Q Consensus        25 ~~~l~~~~~~------~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~-----~i~vw~~~~~~~~~   85 (351)
                      +.+++.|+.+      ..+..||....       ........ +++. -+|++ +.||.++     .+..||..+.+-..
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            5667777753      24667776655       11111111 2222 24555 8888754     47889987654322


Q ss_pred             --EeeCCCCCeEEEEEeCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeEEeccCCCCeE-EE
Q psy519           86 --IFVGHKQDVTCARFHPKITYIGTGSYDK-----------------------AVRLWSITDGASVRVFSDHVSPVL-SI  139 (351)
Q Consensus        86 --~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~i~-~~  139 (351)
                        .+.........+.  -++...+.|+.++                       .+..||..+.+....-.-...... ++
T Consensus       382 ~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~  459 (557)
T PHA02713        382 LPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV  459 (557)
T ss_pred             CCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence              2211111122222  2577777777542                       477888887654322211111111 12


Q ss_pred             EEccCCCEEEEEecCCC---CCeEEEEEccC-C--ceeEEeccCCCCEEEEEECCCCcEEEEEcCCC--eEEEEEcCCCc
Q psy519          140 AFSPCGKYLASGGTGSY---DKAVRLWSITD-G--ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG--LVLTHELTTGR  211 (351)
Q Consensus       140 ~~~~~~~~l~~~~~~~~---d~~i~i~d~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  211 (351)
                      + .-++++.+.|+....   ...+..||..+ .  ..+..+.........+.+  ++++.++|+.+|  .+..||..+.+
T Consensus       460 ~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        460 V-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             E-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            2 225667777764110   12467899876 3  223333322222222333  688888998887  67778877665


Q ss_pred             EE
Q psy519          212 VI  213 (351)
Q Consensus       212 ~~  213 (351)
                      -.
T Consensus       537 W~  538 (557)
T PHA02713        537 WN  538 (557)
T ss_pred             cc
Confidence            43

>KOG2444|consensus

Probab=97.27  E-value=0.00063  Score=53.04  Aligned_cols=140  Identities=14%  Similarity=0.051  Sum_probs=78.5

Q ss_pred             EEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee-EEeccCCCCEEE
Q psy519          106 IGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV-RVFSDHVSPVLS  183 (351)
Q Consensus       106 l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~  183 (351)
                      +...+.+|.|.-++++..+.... -..+...-.-+.   -+..+++|+.   +|.|++|........ .........+.+
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~---dg~v~~~n~n~~g~~~d~~~s~~e~i~~  106 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTS---DGAVYVFNWNLEGAHSDRVCSGEESIDL  106 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecc---cceEEEecCCccchHHHhhhccccccee
Confidence            33445678887777654332111 111111111112   3466888888   999999987632111 111112222322


Q ss_pred             E-EECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCC
Q psy519          184 I-AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTG--SLTGTVQFYGWPS  252 (351)
Q Consensus       184 ~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~~  252 (351)
                      + .--.++.+..+++.+|.|+.|++.-.+.+.... +|. .+...+..+..+++++.+  |.|..++.|++..
T Consensus       107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2 222355688899999999999998777666543 344 455555555556666666  6666777777654

>KOG2280|consensus

Probab=97.22  E-value=0.086  Score=48.73  Aligned_cols=192  Identities=14%  Similarity=0.190  Sum_probs=107.9

Q ss_pred             CceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe----eCCCCCeEEEEEeCCCCE
Q psy519           35 KNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF----VGHKQDVTCARFHPKITY  105 (351)
Q Consensus        35 ~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~  105 (351)
                      ..|+|++....     .-.|. .+-.+.|+.+..++....+|+++||++.... +..+    ......|....+..+|-.
T Consensus        64 ~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEeccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCceE
Confidence            45888888776     22333 7889999999999999999999999986322 2221    122334555555555533


Q ss_pred             EEEEeCCCcEEEEeCCCCceeEEecc-CCCCe--EEEEEccCCC---EEEEEecCCCCCeEEEEEccCC-ceeEEeccCC
Q psy519          106 IGTGSYDKAVRLWSITDGASVRVFSD-HVSPV--LSIAFSPCGK---YLASGGTGSYDKAVRLWSITDG-ASVRVFSDHV  178 (351)
Q Consensus       106 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i--~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~  178 (351)
                      +++  .+|.+.+-+-.....++.++. .....  .|-...+++.   .++-...   .-...++..... .....+....
T Consensus       142 vlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~---~v~~~~~q~~~~~~q~~~~~~~~  216 (829)
T KOG2280|consen  142 VLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV---AVGLHICQVEESRVQLHALSWPN  216 (829)
T ss_pred             EEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech---hhhhcccceecccccccccCCCC
Confidence            333  455555543222222333322 11111  2222222211   1111110   000111111111 1122222234


Q ss_pred             CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                      ..+..+..||+.++|+.-...|.+.+-+....++...+....+.+...++|.-+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            5678899999999999999999999999888888877765556666678886554

>KOG2395|consensus

Probab=97.19  E-value=0.008  Score=52.84  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=94.7

Q ss_pred             CCCEE-EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE-------EEEEecCCCCCeEEEEEccCCce--e
Q psy519          102 KITYI-GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY-------LASGGTGSYDKAVRLWSITDGAS--V  171 (351)
Q Consensus       102 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~~~~d~~i~i~d~~~~~~--~  171 (351)
                      +.+.| ..+.....++-.|++.|+.+...+-+.. |.-+.+.|+.+.       -+.|-.   +..|.-||.|-...  +
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs---~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS---DNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeec---CCceEEecccccCccee
Confidence            34444 3444556788899999999988876555 777778776432       233444   88999999885322  2


Q ss_pred             EEeccC----CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          172 RVFSDH----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       172 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                      ...+.|    .....|.+-..+ -++++|+.+|.|++||. .+..-++.-..-..+|..+..+.+|++++..+ +..+.+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            222222    223445554444 47899999999999997 55544443334457899999999999987765 456766


Q ss_pred             EeCC
Q psy519          248 YGWP  251 (351)
Q Consensus       248 ~~~~  251 (351)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            6654

>KOG4499|consensus

Probab=97.18  E-value=0.078  Score=41.93  Aligned_cols=209  Identities=12%  Similarity=0.086  Sum_probs=113.8

Q ss_pred             cEEEEecCCCceEEEecCCc---cCCCccc-eEEEEECCCC---cE-EEEeCCCcEEEEeCC--CCeeeEEee-----CC
Q psy519           26 DVLANLESQKNLQSRYLPYY---TSGHDMT-VWSVEACSKG---LA-LTGSRDTTARLWSLE--QMYPLRIFV-----GH   90 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~---~~~~~~~-i~~~~~~~~~---~~-~~~~~d~~i~vw~~~--~~~~~~~~~-----~~   90 (351)
                      .++..--..+.|.-||..++   ...-..+ ..++.+--.+   .+ +.++..-.|--||-.  .....+++.     ..
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            34444444566777887765   1111111 2333332222   33 455544445557732  223333321     11


Q ss_pred             CCCeEEEEEeCCCCEEEEEeC---------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           91 KQDVTCARFHPKITYIGTGSY---------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +.+.+.-..+|+|++++-.-.         .|.++.|-..  ..+..+...-.--..++|+.+.+.+.....  .+-.|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEcc--CceEEe
Confidence            345566677899988432211         2344444432  122222222233356899988887776543  266776


Q ss_pred             EEE--ccCCc-----eeEEecc----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          162 LWS--ITDGA-----SVRVFSD----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       162 i~d--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                      -||  ..+|.     .+..++.    .....-.++...+|++.++.-..+.|...|..+|+.+.++.++ ...++++||-
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg  262 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG  262 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence            777  44442     2222221    1111234556668888888888899999999999999999876 5689999995


Q ss_pred             C-CCCEEEEE
Q psy519          231 V-TGETLVTG  239 (351)
Q Consensus       231 ~-~~~~l~~~  239 (351)
                      - +-..|++.
T Consensus       263 Gkn~d~~yvT  272 (310)
T KOG4499|consen  263 GKNLDILYVT  272 (310)
T ss_pred             CCCccEEEEE
Confidence            3 22344443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.17  E-value=0.0017  Score=37.50  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      ...|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            357999999999999999999999999998 4443

>KOG2444|consensus

Probab=97.16  E-value=0.0032  Score=49.26  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             ccEEEEecCCCceEEEecCCc------cCCCccceEE-EEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeE
Q psy519           25 EDVLANLESQKNLQSRYLPYY------TSGHDMTVWS-VEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHK-QDVT   95 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~-~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~   95 (351)
                      +.-++.|+.+|.|.+|+....      ...-...|-+ +.-..++.+ .+++.|+.|+.|+++-++.+.....|. .+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            345888999999999998743      1122223322 222234456 899999999999999888877776777 5666


Q ss_pred             EEEEeCCCCEEEEE--eCCCcEEEEeCCC
Q psy519           96 CARFHPKITYIGTG--SYDKAVRLWSITD  122 (351)
Q Consensus        96 ~i~~~~~~~~l~~~--~~dg~i~i~d~~~  122 (351)
                      .+..+..++.++.+  +.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            66666666677776  7777788887754

>PHA03098 kelch-like protein; Provisional

Probab=97.15  E-value=0.049  Score=50.51  Aligned_cols=187  Identities=11%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             CCcE-EEEeCCC------cEEEEeCCCCeeeEEe--eCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCcee
Q psy519           61 KGLA-LTGSRDT------TARLWSLEQMYPLRIF--VGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGASV  126 (351)
Q Consensus        61 ~~~~-~~~~~d~------~i~vw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  126 (351)
                      ++.+ +.|+.++      .+..||..+.+-...-  .........+.  -++..++.|+.+     ..+..||..+.+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            3444 7776542      5778888776543211  11111222222  256777788765     35778888776543


Q ss_pred             EEecc-CCCCeEEEEEccCCCEEEEEecCCCC---CeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcCC-
Q psy519          127 RVFSD-HVSPVLSIAFSPCGKYLASGGTGSYD---KAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGED-  199 (351)
Q Consensus       127 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d---~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  199 (351)
                      ..-.. ....-.+++ .-+++..+.|+....+   ..+..||..+.+=  +..+....... +++. .++++++.|+.+ 
T Consensus       372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccC
Confidence            22110 111111222 2256677777631111   4688899876431  11111111111 2222 256666766542 


Q ss_pred             -------CeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy519          200 -------GLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSAS  254 (351)
Q Consensus       200 -------g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~  254 (351)
                             ..+.+||..+.+-...-..... .....+.+  ++++++.|+.+     +.+.+||..+.+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                   2378899877654322111111 11112222  56666666654     356777766553

>PRK10115 protease 2; Provisional

Probab=97.14  E-value=0.25  Score=47.13  Aligned_cols=209  Identities=8%  Similarity=-0.026  Sum_probs=109.4

Q ss_pred             EEEecCCccCCC-ccceEEEEECCCCcEEE--EeC----CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe
Q psy519           38 QSRYLPYYTSGH-DMTVWSVEACSKGLALT--GSR----DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS  110 (351)
Q Consensus        38 ~i~~~~~~~~~~-~~~i~~~~~~~~~~~~~--~~~----d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  110 (351)
                      .++|.+....++ .-.+..+.|+|+|+++.  ...    ...|++.|+.+++.+....... . ..++|.+|++.|+...
T Consensus       113 ~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~  190 (686)
T PRK10115        113 TLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVR  190 (686)
T ss_pred             EEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEE
Confidence            455655432222 25567789999998732  222    2458899998886432221111 1 4599999988776654


Q ss_pred             CC------CcEEEEeCCCC--ceeEEeccCCCCeE-EEEEccCCCEEEEEecCCCCCeEEEEEcc--CCceeEEeccCCC
Q psy519          111 YD------KAVRLWSITDG--ASVRVFSDHVSPVL-SIAFSPCGKYLASGGTGSYDKAVRLWSIT--DGASVRVFSDHVS  179 (351)
Q Consensus       111 ~d------g~i~i~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~d~~i~i~d~~--~~~~~~~~~~~~~  179 (351)
                      .+      ..|+.+++.++  +-...+........ ....+.++++++..+....++.+.+++..  .+.....+.....
T Consensus       191 ~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (686)
T PRK10115        191 KHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD  270 (686)
T ss_pred             ecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC
Confidence            32      36888888877  33344443333333 33344488887766654456789999953  3332222222222


Q ss_pred             CEEEEEECCCCcEEEEEcC---CCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          180 PVLSIAFSPCGKYLASGGE---DGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      ....+. +..+.+++....   ...|...++.+......+... ....+..+.+. .+.++++...+|.-+++-+
T Consensus       271 ~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        271 HEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             CEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            222222 323333333322   223444455421112222222 12467888887 3345566666766544443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.13  E-value=0.11  Score=42.81  Aligned_cols=139  Identities=14%  Similarity=0.031  Sum_probs=87.9

Q ss_pred             ceEEeeecCCccccEEEEec---CCCceEEEecCCc--cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe-CCCCeee-
Q psy519           13 HFIQNSFKPETVEDVLANLE---SQKNLQSRYLPYY--TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS-LEQMYPL-   84 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~---~~~~i~i~~~~~~--~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~-~~~~~~~-   84 (351)
                      .+.+.+.||+  ++.+|+..   ....++++.....  .......+....|++++.+ +....+...+++. ..+++.. 
T Consensus        25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCC--CCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            6788999999  99887765   3345666655444  1112347788899999988 5555566666663 2333221 


Q ss_pred             EEeeCC-C-CCeEEEEEeCCCCEEEEEe---CCCcEEEEeCC---CC------ceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           85 RIFVGH-K-QDVTCARFHPKITYIGTGS---YDKAVRLWSIT---DG------ASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        85 ~~~~~~-~-~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      ...... . ..|..++++|||..++...   .++.|.+--+.   .+      ............+..++|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            112111 1 2899999999999887665   34677766543   22      112222234568899999999887777


Q ss_pred             Eec
Q psy519          151 GGT  153 (351)
Q Consensus       151 ~~~  153 (351)
                      +..
T Consensus       183 ~~~  185 (253)
T PF10647_consen  183 GRS  185 (253)
T ss_pred             eCC
Confidence            654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.09  E-value=0.16  Score=43.85  Aligned_cols=227  Identities=12%  Similarity=0.110  Sum_probs=117.8

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCC----CcE-EEEeCC------
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSK----GLA-LTGSRD------   70 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~----~~~-~~~~~d------   70 (351)
                      ...+|+|.|+  |+++++- ..|.|++++....           ..........++++|+    +.+ +.....      
T Consensus         3 ~P~~~a~~pd--G~l~v~e-~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPD--GRLLVAE-RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETT--SCEEEEE-TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCC--CcEEEEe-CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            4578999999  9887764 5899999983322           2234456789999994    555 444421      


Q ss_pred             --CcEEEEeCCCC-------eee-EEeeC---CCCCeEEEEEeCCCCEEEEEeCCC-------------cEEEEeCCCCc
Q psy519           71 --TTARLWSLEQM-------YPL-RIFVG---HKQDVTCARFHPKITYIGTGSYDK-------------AVRLWSITDGA  124 (351)
Q Consensus        71 --~~i~vw~~~~~-------~~~-~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg-------------~i~i~d~~~~~  124 (351)
                        ..|.-|.....       +.+ ..+..   ....-..|.|.|||.+.++.+..+             .|.-.+.. ++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence              23444444332       111 11122   223456799999997776665433             33333322 11


Q ss_pred             e-------------eEEeccCCCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCC----------------------
Q psy519          125 S-------------VRVFSDHVSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDG----------------------  168 (351)
Q Consensus       125 ~-------------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~----------------------  168 (351)
                      .             ...+...-.....++|+|. |.++ ++..+. +..=.|.-++.+                      
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~-~~d~G~-~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLW-AADNGP-DGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEE-EEEE-S-SSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEE-EEccCC-CCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            0             0111111123467999998 5444 443321 222222222221                      


Q ss_pred             -------ceeEEeccCCCCEEEEEECC-------CCcEEEEEcCCCeEEEEEcCCCcEEEEe-e--ccCCCCEEEEEEcC
Q psy519          169 -------ASVRVFSDHVSPVLSIAFSP-------CGKYLASGGEDGLVLTHELTTGRVISRF-H--LQEHEPVTSLVWSV  231 (351)
Q Consensus       169 -------~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~v~~~~~~~  231 (351)
                             .+...+..| ..+..+.|.+       .+.++++.-..+.|....+..+..+... .  ......+..+++.|
T Consensus       237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                   112233333 4566676653       4556777666778888887655333221 1  12224799999999


Q ss_pred             CCCEEEEEeCCCeEE
Q psy519          232 TGETLVTGSLTGTVQ  246 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~  246 (351)
                      ||.+.++...+|.|+
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999888877788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.07  E-value=0.0019  Score=37.27  Aligned_cols=32  Identities=16%  Similarity=0.019  Sum_probs=27.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLP   43 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~   43 (351)
                      ...+|.+++|+|.  .++||.+..+|.|.+++++
T Consensus        10 l~~~v~~~~w~P~--mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPT--MDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCC--CCEEEEEECCCeEEEEECC
Confidence            4567889999999  9999999999999998874

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.86  E-value=0.2  Score=41.24  Aligned_cols=186  Identities=16%  Similarity=0.181  Sum_probs=116.4

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGH-KQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      ..+-...+.++.|+|+.+. ++......-.|+=-.+|+.++++.-. -...-.+.+..++++.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3444556999999999876 55555566666655678888776421 223456788888888888778888888887655


Q ss_pred             ceeEEe----------ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-e--eEEeccC-------CCCEEE
Q psy519          124 ASVRVF----------SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-S--VRVFSDH-------VSPVLS  183 (351)
Q Consensus       124 ~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~--~~~~~~~-------~~~i~~  183 (351)
                      ..+...          .........++|+|....|+.+-+   -.-+.||...... .  ......+       -..+..
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE---r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE---RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc---cCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            322111          112456788999999888888866   6667777765332 1  1111111       134677


Q ss_pred             EEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--------CCEEEEEEcCCCCE
Q psy519          184 IAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--------EPVTSLVWSVTGET  235 (351)
Q Consensus       184 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~  235 (351)
                      +.|++ .+..++.+.+++.+.-.|.. |..+..+.+...        .+...++..++|.+
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            88887 55667777778888877764 444443332111        23456677666653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.83  E-value=0.5  Score=45.45  Aligned_cols=154  Identities=14%  Similarity=0.096  Sum_probs=96.3

Q ss_pred             cEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEE
Q psy519           63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT-------------CARFHP--KITYIGTGSY----------DKAVRL  117 (351)
Q Consensus        63 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~-------------~i~~~~--~~~~l~~~~~----------dg~i~i  117 (351)
                      +++.++.|+.+.-.|.++|+....+.. ...+.             .+.-.|  .+..+++|+.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            557888899999999999998876632 21110             111122  1345556642          688999


Q ss_pred             EeCCCCceeEEeccC---------CC--------Ce-EEEEEccCCCEEEEEec---------------CCCCCeEEEEE
Q psy519          118 WSITDGASVRVFSDH---------VS--------PV-LSIAFSPCGKYLASGGT---------------GSYDKAVRLWS  164 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~---------~~--------~i-~~~~~~~~~~~l~~~~~---------------~~~d~~i~i~d  164 (351)
                      +|.++|+.+..+...         .+        .+ ..++++++...++.+..               ..+.+.|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            999999988766321         00        11 23455665555554321               12356788889


Q ss_pred             ccCCceeEEeccCCC---------CEEEEEECC-CCc---EEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          165 ITDGASVRVFSDHVS---------PVLSIAFSP-CGK---YLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       165 ~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      .++|+..-.++....         ...-+.+.. +|+   .++.++.+|.++++|.++|+.+...+
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            999988776654111         112223332 553   78899999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4441|consensus

Probab=96.77  E-value=0.47  Score=44.23  Aligned_cols=188  Identities=16%  Similarity=0.124  Sum_probs=102.8

Q ss_pred             CcE-EEEeCC------CcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeE
Q psy519           62 GLA-LTGSRD------TTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYD------KAVRLWSITDGASVR  127 (351)
Q Consensus        62 ~~~-~~~~~d------~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  127 (351)
                      +.+ +.|+.+      ..+..+|..+++...... .....-.+++.. ++...++|+.|      .++..||....+...
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            444 777776      357788888764332221 122223445554 45788888888      367889988877443


Q ss_pred             Ee--ccCCCCeEEEEEccCCCEEEEEecCCCCC-----eEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          128 VF--SDHVSPVLSIAFSPCGKYLASGGTGSYDK-----AVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       128 ~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~d~-----~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      .-  ...........+  +|...++|+.   ||     .+..||.++.+  .+..+...........+  +|++.++|+.
T Consensus       364 ~a~M~~~R~~~~v~~l--~g~iYavGG~---dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~  436 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVL--DGKLYAVGGF---DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGG  436 (571)
T ss_pred             cCCccCccccceeEEE--CCEEEEEecc---ccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCc
Confidence            21  111111111222  6788888887   64     47778876543  12111111111222222  6788888875


Q ss_pred             CC------eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeee
Q psy519          199 DG------LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-----TVQFYGWPSASKIGI  258 (351)
Q Consensus       199 dg------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~  258 (351)
                      ++      .+..||..++.-...-.......-..++. -++.+.+.|+.|+     +|..||..+.+-...
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            43      56788887765433222221111122322 2577778888776     377888887765544

>PHA02790 Kelch-like protein; Provisional

Probab=96.75  E-value=0.28  Score=44.78  Aligned_cols=181  Identities=10%  Similarity=-0.000  Sum_probs=87.1

Q ss_pred             CcE-EEEeCCC-----cEEEEeCCCCeeeE--EeeCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceeEE--e
Q psy519           62 GLA-LTGSRDT-----TARLWSLEQMYPLR--IFVGHKQDVTCARFHPKITYIGTGSYD--KAVRLWSITDGASVRV--F  129 (351)
Q Consensus        62 ~~~-~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~--~  129 (351)
                      +.+ ++|+.++     .+..||..+++-..  .+.........+  .-++...+.|+.+  ..+..||..+++....  +
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            444 7777543     46678887654322  111111112222  2356777777754  4588888776543322  1


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCE--EEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      .........++  -+|+..+.|+.......+..||.++.+ -........+.  .+++ .-++++.+.|+   .+.+||.
T Consensus       350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp  422 (480)
T PHA02790        350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCE  422 (480)
T ss_pred             CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEE-EECCEEEEECC---ceEEecC
Confidence            11111112222  267777777752223457788876542 11111111111  1122 22566666663   4678888


Q ss_pred             CCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q psy519          208 TTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSA  253 (351)
Q Consensus       208 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~  253 (351)
                      ++.+-...-..... .....+.  -++++.+.|+.+     ..+..||..+.
T Consensus       423 ~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            76654332211111 1222222  256777777654     24556665543

>KOG4499|consensus

Probab=96.71  E-value=0.16  Score=40.25  Aligned_cols=142  Identities=9%  Similarity=0.007  Sum_probs=87.4

Q ss_pred             ccceEEEEECCCCcEEEEeCC----------CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEE
Q psy519           50 DMTVWSVEACSKGLALTGSRD----------TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI-GTGSYDKAVRLW  118 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~~~~~~d----------~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~  118 (351)
                      ..+.+.-..+|+|++..|...          |.++.|-...  .+..+...-.--+.++|+.+.+.+ ++-+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            455666677899998555432          3344443321  112222222233578898776655 455667778777


Q ss_pred             e--CCCCce-----eEEecc----CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEEC
Q psy519          119 S--ITDGAS-----VRVFSD----HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS  187 (351)
Q Consensus       119 d--~~~~~~-----~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  187 (351)
                      |  ..+|..     +..++.    .....-.++..-+|++.+++-.   .++|...|..+|+.+.+++-....+++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            7  555432     222221    1111234556668888888877   8999999999999999998888999999996


Q ss_pred             CC-CcEEEEE
Q psy519          188 PC-GKYLASG  196 (351)
Q Consensus       188 ~~-~~~l~~~  196 (351)
                      -. -..|++.
T Consensus       263 Gkn~d~~yvT  272 (310)
T KOG4499|consen  263 GKNLDILYVT  272 (310)
T ss_pred             CCCccEEEEE
Confidence            42 2344443

>PHA03098 kelch-like protein; Provisional

Probab=96.67  E-value=0.15  Score=47.41  Aligned_cols=179  Identities=12%  Similarity=0.001  Sum_probs=86.1

Q ss_pred             ccEEEEecCCC------ceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC-----CcEEEEeCCCCeeeE
Q psy519           25 EDVLANLESQK------NLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD-----TTARLWSLEQMYPLR   85 (351)
Q Consensus        25 ~~~l~~~~~~~------~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d-----~~i~vw~~~~~~~~~   85 (351)
                      +.+++.|+.++      .+..||..+.       ........ +++. -++.+ +.||.+     ..+..||..+.+-..
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            55667776532      4667777665       11111111 2222 24555 778765     347778887654322


Q ss_pred             --EeeCCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCC
Q psy519           86 --IFVGHKQDVTCARFHPKITYIGTGSYD------KAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        86 --~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                        .+....... +++. -+++..+.|+.+      ..+..||+.+.+....-.  ..... .+++ ..++..++.|+...
T Consensus       373 ~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~  448 (534)
T PHA03098        373 EPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISY  448 (534)
T ss_pred             CCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccC
Confidence              111111111 2222 256677777632      458899988765433211  11111 1222 22566667766411


Q ss_pred             CC-----CeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCc
Q psy519          156 YD-----KAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGR  211 (351)
Q Consensus       156 ~d-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  211 (351)
                      .+     ..+.+||..+.+=  +..+.........+.+  ++++++.|+.+     ..+.+||..+.+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            11     2388899876531  1111111111112222  66777777653     467788876654

>KOG3630|consensus

Probab=96.64  E-value=0.027  Score=54.26  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=105.0

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc---------------------c-CCCccceEEEEECCCCcE-E-E-EeCCC
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY---------------------T-SGHDMTVWSVEACSKGLA-L-T-GSRDT   71 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------------~-~~~~~~i~~~~~~~~~~~-~-~-~~~d~   71 (351)
                      ++.++.  ..++++++..+.+.++-....                     + -...-++..+...+|+.+ + . .+.+-
T Consensus        47 la~sn~--ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   47 LAISNS--YSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhcccc--cceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            566666  566666667776666655443                     1 111234555666677766 2 2 23334


Q ss_pred             cEEEEeCCCCeee-----EEeeC------CCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCce-eEEeccCCCCeEE
Q psy519           72 TARLWSLEQMYPL-----RIFVG------HKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLS  138 (351)
Q Consensus        72 ~i~vw~~~~~~~~-----~~~~~------~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~  138 (351)
                      .|.+||+++...-     .-+..      ...-..++.|+|.-. ..+....|+.|++..+..... +..+ ......++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Ta  203 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTA  203 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Ccccceee
Confidence            7889998753211     11111      123345788888432 345566788888887754332 2222 34567899


Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec---cC-CCCEEEEEECCCCcEEEEE
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS---DH-VSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~l~~~  196 (351)
                      ++|+|.|+.++.|-.   .|.+.-|... .+....+.   .. ...|.+++|-....++++-
T Consensus       204 v~WSprGKQl~iG~n---nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRN---NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             EEeccccceeeEecC---CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            999999999999988   8999888753 33222221   11 3678999998766666653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.64  E-value=0.3  Score=40.30  Aligned_cols=146  Identities=17%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             ceEEEEECCCCcE-EEEe---CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe-CCCCcee
Q psy519           52 TVWSVEACSKGLA-LTGS---RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS-ITDGASV  126 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  126 (351)
                      .+.+.+.++++.. +...   ....++++...  ....... ....+....|++++...+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            6888999999976 3322   33445555543  3222221 223678889999977776666566666663 3333322


Q ss_pred             E-Eec-c-CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC---C------ceeEEeccCCCCEEEEEECCCCcEEE
Q psy519          127 R-VFS-D-HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD---G------ASVRVFSDHVSPVLSIAFSPCGKYLA  194 (351)
Q Consensus       127 ~-~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~---~------~~~~~~~~~~~~i~~~~~~~~~~~l~  194 (351)
                      . ... . ....|..+.+||||..++.......++.|.+--+..   +      ............+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 111 1 112899999999999988877433357777765532   2      11122223345788999999998877


Q ss_pred             EEcCCC
Q psy519          195 SGGEDG  200 (351)
Q Consensus       195 ~~~~dg  200 (351)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.60  E-value=0.22  Score=43.67  Aligned_cols=141  Identities=13%  Similarity=0.161  Sum_probs=79.7

Q ss_pred             CCeEEEEEeCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           92 QDVTCARFHPKITYIGTGS-----------YDK-AVRLWSITD--GA--SVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        92 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      .....|+|.++|+++++-.           ..+ .|.+++-..  ++  ....+.........+++.+++ +++ +..  
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~--   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATP--   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCC--
Confidence            3456789999998777643           223 677776443  22  223443334456889999888 444 433  


Q ss_pred             CCCeEEEE-EccCC-----c--eeE-Eecc----CCCCEEEEEECCCCcEEEEEcCC-------------------CeEE
Q psy519          156 YDKAVRLW-SITDG-----A--SVR-VFSD----HVSPVLSIAFSPCGKYLASGGED-------------------GLVL  203 (351)
Q Consensus       156 ~d~~i~i~-d~~~~-----~--~~~-~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~  203 (351)
                       . .|..| |....     +  .+. .+..    +......++|.|||.+.++-+..                   |.+.
T Consensus        90 -~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        90 -P-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             -C-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence             3 45444 54211     1  111 1222    12346789999999866644411                   3455


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      -++...++ ...+. ........++|+++|+++++-.
T Consensus       168 r~~pdg~~-~e~~a-~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       168 RYNPDGGK-LRVVA-HGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEecCCCe-EEEEe-cCcCCCccceECCCCCEEEEcc
Confidence            55554433 22232 3335568899999999877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.54  E-value=0.14  Score=44.97  Aligned_cols=135  Identities=10%  Similarity=-0.008  Sum_probs=76.8

Q ss_pred             cceEEeeecCCccccEEEEec-----------CCC-ceEEEecCCc---------cCCCccceEEEEECCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANLE-----------SQK-NLQSRYLPYY---------TSGHDMTVWSVEACSKGLALTGSRD   70 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~-----------~~~-~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~d   70 (351)
                      .....|+|.++  |.++++-.           ..+ .|.+++-...         +.......+.+++.++| ++.+...
T Consensus        14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP   90 (367)
T ss_pred             CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCC
Confidence            55688999999  99887753           123 6666654322         22223345788999999 5444444


Q ss_pred             CcEEEEeCCC-----CeeeE---EeeC----CCCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEe
Q psy519           71 TTARLWSLEQ-----MYPLR---IFVG----HKQDVTCARFHPKITYIGTGSYD-------------------KAVRLWS  119 (351)
Q Consensus        71 ~~i~vw~~~~-----~~~~~---~~~~----~~~~i~~i~~~~~~~~l~~~~~d-------------------g~i~i~d  119 (351)
                      ...++.+.+.     ++...   .+..    +......++|.|||.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            3333445432     12111   1211    12346789999999876654421                   4466666


Q ss_pred             CCCCceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519          120 ITDGASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      ...++. ..+.........++|+|+|+++++
T Consensus       171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             cCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence            655443 233222344567999999888765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.40  E-value=0.21  Score=46.25  Aligned_cols=112  Identities=15%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCCCCEEEEEEC--CCCcEEEEEcCCCeEEEEEcC---
Q psy519          135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFS--PCGKYLASGGEDGLVLTHELT---  208 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~---  208 (351)
                      ...-+.-+.-++..++-..   ...+.|||.+.+.....-. .....|..+.|.  |+++.+++.+-.+.|.+|--.   
T Consensus        31 ~~~li~gss~~k~a~V~~~---~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSS---RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECC---CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3344444554555444433   6789999998876443322 346789999996  588888888888889888531   


Q ss_pred             ------CCcEEEEeecc--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          209 ------TGRVISRFHLQ--EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       209 ------~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                            +...+..+...  ...+|....|.++|.+++.++  +++.|++-.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence                  11234444332  225799999999998665543  588888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.36  E-value=0.59  Score=40.42  Aligned_cols=151  Identities=17%  Similarity=0.123  Sum_probs=87.4

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA  169 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~  169 (351)
                      ...+..+.+.|++.+++++. .|.+..-.-..++ ...........++++.+.++++.++++.    .|.+.+=....+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCCC
Confidence            45688899999887666554 5655432112222 2222233457889999999998877764    5665432233443


Q ss_pred             eeEEecc----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCEEEEEEcCCCCEEEEEeCCC
Q psy519          170 SVRVFSD----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPVTSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       170 ~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg  243 (351)
                      .-.....    ....+..+.+.|++..++++ .+|.+. .....++.-.....  ........+.|..+++.+++| ..|
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G  323 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG  323 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence            3222211    12357788999887766555 566554 44444444333321  112357788887777766655 578


Q ss_pred             eEEEEe
Q psy519          244 TVQFYG  249 (351)
Q Consensus       244 ~i~i~~  249 (351)
                      .|.-|+
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence            887665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.36  E-value=0.29  Score=45.44  Aligned_cols=112  Identities=15%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec-cCCCCeEEEEEc--cCCCEEEEEecCCCCCeEEEEEccC
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFS--PCGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      -....-+.-+.-++..++.+....+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.+.   .+.|.+|--..
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf---~~~v~l~~Q~R  105 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF---PHHVLLYTQLR  105 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc---CcEEEEEEccc
Confidence            3344555555555555555556789999998876433222 357889999985  58888888888   89999986421


Q ss_pred             -----C----ceeEEe--ccCC-CCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          168 -----G----ASVRVF--SDHV-SPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       168 -----~----~~~~~~--~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                           .    ..++.+  ..++ .+|.+..|.++|.+++.++  +.+.|+|-
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                 1    122222  2333 5789999999987665553  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.29  E-value=0.17  Score=45.62  Aligned_cols=147  Identities=11%  Similarity=0.038  Sum_probs=87.1

Q ss_pred             cceEEeeecCCccccEEEEec--CCCceEEEecCCccCCCccceEEEEECCCC-----cEEEEeCCCcEEEEeCC-----
Q psy519           12 KHFIQNSFKPETVEDVLANLE--SQKNLQSRYLPYYTSGHDMTVWSVEACSKG-----LALTGSRDTTARLWSLE-----   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~--~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~d~~i~vw~~~-----   79 (351)
                      .++..++|.-.  .+.+.+.-  .+|.+++=|-.  ..+.-..|..+.|.|-+     .+++......|.||.+.     
T Consensus        20 HPvhGlaWTDG--kqVvLT~L~l~~gE~kfGds~--viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e   95 (671)
T PF15390_consen   20 HPVHGLAWTDG--KQVVLTDLQLHNGEPKFGDSK--VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE   95 (671)
T ss_pred             ccccceEecCC--CEEEEEeeeeeCCccccCCcc--EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc
Confidence            45677788633  33344331  23333332221  33455679999999864     45777888999999885     


Q ss_pred             CCeeeEEeeCC---CCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-ee-EEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           80 QMYPLRIFVGH---KQD--VTCARFHPKITYIGTGSYDKAVRLWSITDGA-SV-RVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        80 ~~~~~~~~~~~---~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      +++.+.....+   .-+  -.+..|+|....|++-.....=.+++++... .+ ..+ ...+.|.|.+|.+||+.|+++-
T Consensus        96 ~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAv  174 (671)
T PF15390_consen   96 RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAV  174 (671)
T ss_pred             cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEe
Confidence            22222111111   111  2356799988887766555444566665332 23 334 4568899999999999988764


Q ss_pred             cCCCCCeEEEEEc
Q psy519          153 TGSYDKAVRLWSI  165 (351)
Q Consensus       153 ~~~~d~~i~i~d~  165 (351)
                      ..  .=.-++||-
T Consensus       175 GS--sLHSyiWd~  185 (671)
T PF15390_consen  175 GS--SLHSYIWDS  185 (671)
T ss_pred             CC--eEEEEEecC
Confidence            31  334567774

>KOG3630|consensus

Probab=96.27  E-value=0.029  Score=54.04  Aligned_cols=142  Identities=20%  Similarity=0.138  Sum_probs=89.1

Q ss_pred             CeEEEEEeCCCCEEEE--EeCCCcEEEEeCCCCceeE-----------EeccCCCCeEEEEEccCCC-EEEEEecCCCCC
Q psy519           93 DVTCARFHPKITYIGT--GSYDKAVRLWSITDGASVR-----------VFSDHVSPVLSIAFSPCGK-YLASGGTGSYDK  158 (351)
Q Consensus        93 ~i~~i~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~d~  158 (351)
                      ++..+...+|+...++  .+.+-.|..||+++...-.           ..........++.|+|.-. ..++...   |+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~---dl  178 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS---DL  178 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc---cc
Confidence            4555666677654443  3344579999997543211           1112334556788988533 2334444   88


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee---ccCCCCEEEEEEcCCCCE
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH---LQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~  235 (351)
                      .|++..+........--......++++|+|.|+.+++|-..|.+.-|.. ..+....+.   ......|.+++|-....+
T Consensus       179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence            8888876543222111134456789999999999999999999998875 344333332   122357999999887777


Q ss_pred             EEE
Q psy519          236 LVT  238 (351)
Q Consensus       236 l~~  238 (351)
                      +++
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            765

>KOG2247|consensus

Probab=96.13  E-value=0.00056  Score=59.21  Aligned_cols=142  Identities=11%  Similarity=0.071  Sum_probs=102.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCe
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~   82 (351)
                      ..+-.......|-|+  +.-++.++.+..+..||-...   .....+....++|..++..  +.+-..+.+.+||+.+..
T Consensus        31 daalv~pi~~~w~~e--~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   31 DAALVGPIIHRWRPE--GHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             hhhccccceeeEecC--CCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            334445566788898  666888888888888887766   2334556667888888755  677888999999997643


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      ....-.+....-.-+.|++.+..++.+...|.+.+++..+.+.......|...+.++++.+.+..+...
T Consensus       109 tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  109 TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            221111222222337899988899999899999999998877766666688999999999977655543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.05  E-value=0.76  Score=38.82  Aligned_cols=252  Identities=12%  Similarity=0.022  Sum_probs=113.1

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCC---CccceEEEEECCCCcEEEEeCCCcEEEEe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSG---HDMTVWSVEACSKGLALTGSRDTTARLWS   77 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~---~~~~i~~~~~~~~~~~~~~~~d~~i~vw~   77 (351)
                      +-..++..|.|...  ..-+++|. .+.|  +....+        ...   ......++.|..+.-+++| ..+ +.+..
T Consensus        14 ~t~~~l~dV~F~d~--~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~g-~ll~T   86 (302)
T PF14870_consen   14 PTDKPLLDVAFVDP--NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EPG-LLLHT   86 (302)
T ss_dssp             S-SS-EEEEEESSS--S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ETT-EEEEE
T ss_pred             CCCCceEEEEEecC--CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CCc-eEEEe
Confidence            34568899999955  55566654 4443  333222        111   1234667777654333554 344 33334


Q ss_pred             CCCCeeeEEee---CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           78 LEQMYPLRIFV---GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS-VRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        78 ~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      .+.++.=..+.   .-......+....++..++. +..|.|+.=. +.|+. ........+.+..+.-+++|.+++++..
T Consensus        87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             SSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred             cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence            34343222211   11223334444344434433 4455543322 33332 2333445577889999999999999865


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc-CCCcEEEE--eec-cCCCCEEEEEE
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL-TTGRVISR--FHL-QEHEPVTSLVW  229 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~-~~~~~v~~~~~  229 (351)
                         -....-||--...=...-......|..|.|.|++.+.+++ ..|.|+.=+. .....-..  ... ...-.+..++|
T Consensus       165 ---G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  165 ---GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             ---SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred             ---ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence               4445577743221111122345789999999998876655 7788887662 22222111  111 11235899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeee--------eecceeEEecCCceeee
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASKIGI--------GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~  275 (351)
                      .+++...++|+. |.+. .....|+.-..        ..+..+.|.+..+-++.
T Consensus       241 ~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  241 RPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             SSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             cCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            999887777654 4433 33444432222        23445666555444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.96  E-value=0.29  Score=43.46  Aligned_cols=137  Identities=14%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEeCCC-CceeEEeccCCCCe
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-------YIGTGSYDKAVRLWSITD-GASVRVFSDHVSPV  136 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i  136 (351)
                      ..++....++-.|++.|+.+.....|...  -+.|.|+.+       .-++|-.+..|.-.|.+- |..+.... .....
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~  560 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYK  560 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcc
Confidence            56666777888899999999888877764  567777432       223455566677777664 32222221 11222


Q ss_pred             EEEEEcc----CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          137 LSIAFSP----CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       137 ~~~~~~~----~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      +--.|+.    ...++++++.   .|.|++||--.-+....+.+....|..+..+.+|+++++.|. ..+.+-|++
T Consensus       561 tKn~Fss~~tTesGyIa~as~---kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         561 TKNKFSSGMTTESGYIAAASR---KGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccccccccccccCceEEEecC---CCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            2222322    3458888888   999999995444444456667788999999999999888876 457777764

>KOG1897|consensus

Probab=95.88  E-value=1.8  Score=41.79  Aligned_cols=266  Identities=14%  Similarity=0.110  Sum_probs=143.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ..|.-..|--+  ..+|.++..||.+.-+.++..         ..-...++.--.|+..+.- +.+..|.-..+|.-+..
T Consensus       584 RSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k  661 (1096)
T KOG1897|consen  584 RSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK  661 (1096)
T ss_pred             hheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc
Confidence            34444555555  677888888888876666554         1112345555566665544 77777777777764432


Q ss_pred             eeeEEeeCCCCCeEE-EEEeCC--CCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEccCCCEEEEEecC--
Q psy519           82 YPLRIFVGHKQDVTC-ARFHPK--ITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGTG--  154 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~-i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--  154 (351)
                      -....+. -+ .+.. ..|+.+  +..++++. .+.+.+.-+..-+  .+++.. .....+.+++.+....+.+.+..  
T Consensus       662 Lv~spls-~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e  737 (1096)
T KOG1897|consen  662 LVYSPLS-LK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIE  737 (1096)
T ss_pred             EEEeccc-hH-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccc
Confidence            2211111 01 1111 112211  23455544 4567777665432  233433 33455667787754444444320  


Q ss_pred             ---------CCCCeEEEEEccCCceeEEeccC----CCCEEEEEECCC-CcEEEEEcC----------CCeEEEEEcCCC
Q psy519          155 ---------SYDKAVRLWSITDGASVRVFSDH----VSPVLSIAFSPC-GKYLASGGE----------DGLVLTHELTTG  210 (351)
Q Consensus       155 ---------~~d~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~  210 (351)
                               ..-..++++|-++.+.+...+-.    ...+.++.|..| +.++++|+.          .|.|.+|.+...
T Consensus       738 ~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~  817 (1096)
T KOG1897|consen  738 SSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL  817 (1096)
T ss_pred             cchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence                     00124677776665544433211    123455568777 678888762          578888888774


Q ss_pred             cEEEEee-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeE
Q psy519          211 RVISRFH-LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       211 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      +.+.... ..-.+.+.++..- +|+++|.-  +..|++|++.+++.++.     .++..+.+.-.|..++++..-+....
T Consensus       818 ~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  818 NSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             Cceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            4333321 1223455555432 57766554  46899999999876654     44455666667777777766555544


Q ss_pred             EE
Q psy519          285 LR  286 (351)
Q Consensus       285 ~~  286 (351)
                      +.
T Consensus       895 l~  896 (1096)
T KOG1897|consen  895 LQ  896 (1096)
T ss_pred             EE
Confidence            33

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.86  E-value=0.43  Score=45.50  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC--C--------ce---eEEe--------ccCCCCeEEEEEccC---CC
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITD--G--------AS---VRVF--------SDHVSPVLSIAFSPC---GK  146 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~--------~~---~~~~--------~~~~~~i~~~~~~~~---~~  146 (351)
                      ...|..+..+|+|.+++..|..| |.|-.+..  |        +.   .+.+        ......|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34688899999999999988766 44444421  1        10   0111        122345666677664   35


Q ss_pred             EEEEEecCCCCCeEEEEEc
Q psy519          147 YLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~  165 (351)
                      .|++-..   |+.+++||+
T Consensus       163 ~l~vLts---dn~lR~y~~  178 (717)
T PF10168_consen  163 HLVVLTS---DNTLRLYDI  178 (717)
T ss_pred             eEEEEec---CCEEEEEec
Confidence            5555555   677777776

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.81  E-value=0.84  Score=37.33  Aligned_cols=204  Identities=11%  Similarity=0.063  Sum_probs=133.8

Q ss_pred             CCceEEEecCCccCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy519           34 QKNLQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD  112 (351)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  112 (351)
                      ++....|-+..     ...-..++-.+||.. .++...+.|--.|..+++....-.+....-..+..-||+..-++-+..
T Consensus        50 ~~s~~~fpvp~-----G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~  124 (353)
T COG4257          50 DGSSAEFPVPN-----GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL  124 (353)
T ss_pred             CCccceeccCC-----CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc
Confidence            44555555543     344556778899977 888888999999999998776655666667788889998877664433


Q ss_pred             CcEEEEeCCCCceeEE---eccCCCCeEEEEEccCCCEEEEEecCC------CCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          113 KAVRLWSITDGASVRV---FSDHVSPVLSIAFSPCGKYLASGGTGS------YDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       113 g~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                       -|.-.|.++.+..+-   .+..........|.+.|++-+++..+-      ..+.|++|+.-          .....+.
T Consensus       125 -aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyG  193 (353)
T COG4257         125 -AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYG  193 (353)
T ss_pred             -eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcc
Confidence             566666655543221   122345677889999999888875311      12234444432          2234567


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE--HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |+..|||..-++.-.+..|-..|..++.. ..+....  +..-+.+--+|.|+.-++....+.+..||-...+
T Consensus       194 i~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         194 ICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             eEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            89999999888877777788778776632 2222111  2345566667788888887778888888866544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.69  E-value=0.79  Score=36.14  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC---eEEEE-EccCC----ceeE-
Q psy519          104 TYIGTGSYDKAVRLWSITD--GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK---AVRLW-SITDG----ASVR-  172 (351)
Q Consensus       104 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~---~i~i~-d~~~~----~~~~-  172 (351)
                      ..|+.+...+.|.+|++.+  .+....+. .-+.|..+.++..|+++++--......   .+++| +.+..    ..+. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            3454446678899999983  33455565 348899999999999999986532233   56765 33221    1111 


Q ss_pred             Eec---------------------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE-E---EEeecc-----C--
Q psy519          173 VFS---------------------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV-I---SRFHLQ-----E--  220 (351)
Q Consensus       173 ~~~---------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~~~~-----~--  220 (351)
                      .+-                     +-..++.+++-+|-..-|++|+ ++.+.+|.++.... .   ..+.+.     +  
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            111                     1234566788888444455555 45788998764433 1   111111     1  


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      .-.+..+++.  +.++|..+ +-.++++.+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            1234555554  56777765 456777654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.69  E-value=1.4  Score=38.84  Aligned_cols=199  Identities=15%  Similarity=0.052  Sum_probs=112.7

Q ss_pred             ECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCC-C
Q psy519           58 ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK--QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV-S  134 (351)
Q Consensus        58 ~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~  134 (351)
                      ...+++...+..+|.|.-.|.++++.+.....-.  ..+..-.+..+|+ ++.++.++.++.+|.++|+.+....... .
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            4457777777889999999999988765443221  2233333333665 7778889999999998899888776544 1


Q ss_pred             CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEEC--CCCcEEEEEcC--CCeEEEEEcCCC
Q psy519          135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS--PCGKYLASGGE--DGLVLTHELTTG  210 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~--dg~i~i~d~~~~  210 (351)
                      .+..-..-.++ .+...+.   ++.+...|..+++..-........-.....+  .....++.+..  ++.+.-.|+.+|
T Consensus       144 ~~~~~~v~~~~-~v~~~s~---~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G  219 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTD---DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDG  219 (370)
T ss_pred             EEecCcEEcCc-EEEEecC---CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCC
Confidence            11222222233 3333334   7888888888887766543321100001111  12334444544  567778888888


Q ss_pred             cEEEEeeccCCCCEE---EE-EEcC----CCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy519          211 RVISRFHLQEHEPVT---SL-VWSV----TGETLVTGSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~---~~-~~~~----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      ...-...........   .. .+..    .+.-+..++.++.+...+..+++.+-....
T Consensus       220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            776653222211110   01 1100    122235666778888888888887755444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.67  E-value=1.2  Score=38.29  Aligned_cols=144  Identities=21%  Similarity=0.278  Sum_probs=85.8

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCc------EEEEeCCC--C--ceeE-----EeccCCC--------CeEEEEEccCCCE
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKA------VRLWSITD--G--ASVR-----VFSDHVS--------PVLSIAFSPCGKY  147 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~~-----~~~~~~~--------~i~~~~~~~~~~~  147 (351)
                      -+.++.+.+.+++..+++.+.+|.      ++.+++..  +  ..+.     .+....+        ..-++++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999876666667777777      66666543  1  1111     1111111        3447888777777


Q ss_pred             EEEEecCCCC------CeEEEEEccCCceeEEec---------------cCCCCEEEEEECCCCcEEEEEcC-----CC-
Q psy519          148 LASGGTGSYD------KAVRLWSITDGASVRVFS---------------DHVSPVLSIAFSPCGKYLASGGE-----DG-  200 (351)
Q Consensus       148 l~~~~~~~~d------~~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~-----dg-  200 (351)
                      +++.-.   +      ..|.-++.. |+....+.               ..+...-+++++|+|+.|+++.+     |+ 
T Consensus        99 ~is~E~---~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   99 WISSEG---GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEeCC---ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            776544   6      778888865 55444331               13446789999999997666543     22 


Q ss_pred             ----------eEEEEEcCC-CcEEEE--eecc------CCCCEEEEEEcCCCCEEEE
Q psy519          201 ----------LVLTHELTT-GRVISR--FHLQ------EHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       201 ----------~i~i~d~~~-~~~~~~--~~~~------~~~~v~~~~~~~~~~~l~~  238 (351)
                                .|..||..+ ++....  +...      ....+..+.+-+++++|+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                      234455544 322222  2222      2457888899899887765

>KOG1916|consensus

Probab=95.66  E-value=0.018  Score=53.97  Aligned_cols=182  Identities=16%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             CCCcEEEEeCCCCee-eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC--CCcee-----EEeccCCCCeEEE
Q psy519           69 RDTTARLWSLEQMYP-LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSIT--DGASV-----RVFSDHVSPVLSI  139 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~-~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~-----~~~~~~~~~i~~~  139 (351)
                      ..+.+++-+...... ...+++..+.+-.++|-. +...+.  -.-|.+.+||+.  .|+..     .........+.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            345566666543221 122345566677777733 222222  234778899875  34432     2223344555666


Q ss_pred             EEcc---CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE-----------EECCCCcEEEEEcCCCeEEEE
Q psy519          140 AFSP---CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI-----------AFSPCGKYLASGGEDGLVLTH  205 (351)
Q Consensus       140 ~~~~---~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~dg~i~i~  205 (351)
                      .|.|   +.-++..+..   ++.+++....+... ..+..|...+..+           ..+|||+.++.++.||.+++|
T Consensus       187 ~wcp~~~~~~~ic~~~~---~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLK---GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             eecccccccceeeeccC---CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            6665   5556666655   88888877654321 2233455443332           368999999999999998888


Q ss_pred             EcC-----CCcEEEEeeccCCCCEEEEEEcCC-------C--CEEEEEeC-CCeEEEEeCCCCcee
Q psy519          206 ELT-----TGRVISRFHLQEHEPVTSLVWSVT-------G--ETLVTGSL-TGTVQFYGWPSASKI  256 (351)
Q Consensus       206 d~~-----~~~~~~~~~~~~~~~v~~~~~~~~-------~--~~l~~~~~-dg~i~i~~~~~~~~~  256 (351)
                      .+.     .-+++...+.+...+-.|..++.+       +  .+++++++ +..+++|.....+.+
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            653     223444443222122222223322       1  23455544 456888887665554

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.63  E-value=0.042  Score=47.71  Aligned_cols=220  Identities=13%  Similarity=0.056  Sum_probs=121.3

Q ss_pred             ccEEEEecCCCceEEEecCCccCCCccceEE---------EEECCCC--------cE-EEEeCCCcEEEEeCCC------
Q psy519           25 EDVLANLESQKNLQSRYLPYYTSGHDMTVWS---------VEACSKG--------LA-LTGSRDTTARLWSLEQ------   80 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~---------~~~~~~~--------~~-~~~~~d~~i~vw~~~~------   80 (351)
                      ...++.|.++|.+.+....-.   |+-+-..         ++..++|        .+ +....+....+++...      
T Consensus       127 qp~~alglsngqv~v~qp~~s---~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~  203 (733)
T COG4590         127 QPWFALGLSNGQVAVVQPQLS---HTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILR  203 (733)
T ss_pred             CceEEEeccCCeEEEEecccc---ccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhh
Confidence            567889999999988865432   1111011         1222222        22 3344444444444321      


Q ss_pred             ------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-EEe-ccCCC----CeE-EEEEccCCCE
Q psy519           81 ------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV-RVF-SDHVS----PVL-SIAFSPCGKY  147 (351)
Q Consensus        81 ------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~~----~i~-~~~~~~~~~~  147 (351)
                            ++.+..+......+..+-..|||+.++.-+. ..+.++++.+.... +++ ....+    .|+ .+..-..|.-
T Consensus       204 g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S  282 (733)
T COG4590         204 GDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS  282 (733)
T ss_pred             cccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee
Confidence                  2223334445567778888999998877664 77888888654321 111 11111    111 1112224556


Q ss_pred             EEEEecCCCCCeEEEE-EccCCce-----eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          148 LASGGTGSYDKAVRLW-SITDGAS-----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~-d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      ++++..   ||.|.-| |.+.+..     ++.++-...++..+.-..+.+-+++-+..|.+..+.....+.+..-  ...
T Consensus       283 LLv~~~---dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~  357 (733)
T COG4590         283 LLVVHE---DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAY  357 (733)
T ss_pred             EEEEcC---CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhh
Confidence            777777   8887766 6655421     2222222233333332224456777788888887765444333221  122


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      ..+.-+++||.+.+|++- +.|.++++.+++..
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             cCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence            356788999999998875 45789999988753

>PHA02790 Kelch-like protein; Provisional

Probab=95.53  E-value=1.9  Score=39.45  Aligned_cols=172  Identities=9%  Similarity=-0.094  Sum_probs=81.7

Q ss_pred             ccEEEEecCCC-----ceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC--CcEEEEeCCCCeee--EEe
Q psy519           25 EDVLANLESQK-----NLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD--TTARLWSLEQMYPL--RIF   87 (351)
Q Consensus        25 ~~~l~~~~~~~-----~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d--~~i~vw~~~~~~~~--~~~   87 (351)
                      +.++++|+.++     .+..||....       ....... .+++. -++.+ +.|+.+  ..+..||..+++-.  ..+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            45667776543     4556776655       1111111 12222 35666 777764  35778887655322  122


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEecc--CCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDK---AVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ....... +++ .-+++..+.|+.++   .+..||.++.+....-..  ..... +++ .-++...+.|+      .+..
T Consensus       350 ~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG------~~e~  419 (480)
T PHA02790        350 LKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR------NAEF  419 (480)
T ss_pred             CCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC------ceEE
Confidence            1111111 222 22577777777653   477888877654332111  11111 222 22555555543      4677


Q ss_pred             EEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCC
Q psy519          163 WSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTG  210 (351)
Q Consensus       163 ~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  210 (351)
                      ||.++.+  .+..+.........+.+  ++++.++|+.+     ..+..||..++
T Consensus       420 ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        420 YCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence            8876542  12222111112222222  67777777754     24556665544

>PRK13684 Ycf48-like protein; Provisional

Probab=95.46  E-value=1.5  Score=37.89  Aligned_cols=222  Identities=12%  Similarity=0.029  Sum_probs=109.1

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      -...+.+|.|...  ..-+++|. +|.|  |.....          .......+.++.|.++.-+++ +..+.|..- .+
T Consensus        44 ~~~~l~~v~F~d~--~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~-G~~g~i~~S-~D  116 (334)
T PRK13684         44 TEANLLDIAFTDP--NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGDEGWIV-GQPSLLLHT-TD  116 (334)
T ss_pred             CCCceEEEEEeCC--CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCCcEEEe-CCCceEEEE-CC
Confidence            3567888999865  56666664 4443  222221          111233467788865433344 444443322 12


Q ss_pred             CC---eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           80 QM---YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        80 ~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      .+   +.+..-.........+....++..++ ++..|.|..=+ +.|+.-..+ ......+.++.+.|++.+++++.   
T Consensus       117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~---  191 (334)
T PRK13684        117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS---  191 (334)
T ss_pred             CCCCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC---
Confidence            12   22211000111112222222222333 34445443222 233322222 22346788999999988777764   


Q ss_pred             CCCeEEEE-EccCCceeEEe-ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc---CCCCEEEEEEc
Q psy519          156 YDKAVRLW-SITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ---EHEPVTSLVWS  230 (351)
Q Consensus       156 ~d~~i~i~-d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~  230 (351)
                       .|.+..- | ..++.-... ......+..+.+.|+++.++++ ..|.+.+=....+..-.....+   ....+..+.+.
T Consensus       192 -~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~  268 (334)
T PRK13684        192 -RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR  268 (334)
T ss_pred             -CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence             5655432 2 122222222 2334578899999998877766 4576543233444332222211   12357889999


Q ss_pred             CCCCEEEEEeCCCeEEE
Q psy519          231 VTGETLVTGSLTGTVQF  247 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i  247 (351)
                      +++..++++ .+|.+..
T Consensus       269 ~~~~~~~~G-~~G~v~~  284 (334)
T PRK13684        269 TPGEIWAGG-GNGTLLV  284 (334)
T ss_pred             CCCCEEEEc-CCCeEEE
Confidence            988766555 5665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.38  E-value=1.6  Score=37.69  Aligned_cols=227  Identities=17%  Similarity=0.195  Sum_probs=112.2

Q ss_pred             ceEEEEECCCCcEEEEeCCCcEEEEeCCCCee---eEEe----eCCCCCeEEEEEeCC----CCEEEEEeCC--------
Q psy519           52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYP---LRIF----VGHKQDVTCARFHPK----ITYIGTGSYD--------  112 (351)
Q Consensus        52 ~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~---~~~~----~~~~~~i~~i~~~~~----~~~l~~~~~d--------  112 (351)
                      ..+.|+|.|+|.++++...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            46789999999998888899999999 44432   2222    233457889999994    3333333311        


Q ss_pred             CcEEEEeCCCC--c-----e-eEEecc---CCCCeEEEEEccCCCEEEEEecCCC----------CCeEEEEEccCCce-
Q psy519          113 KAVRLWSITDG--A-----S-VRVFSD---HVSPVLSIAFSPCGKYLASGGTGSY----------DKAVRLWSITDGAS-  170 (351)
Q Consensus       113 g~i~i~d~~~~--~-----~-~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~----------d~~i~i~d~~~~~~-  170 (351)
                      ..|.-|....+  .     . +..+..   ....-..|+|.|||.+.++.+....          .|.|.-.+.. ++. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence            23444444333  1     1 111121   2345567999999977776654211          2333333322 110 


Q ss_pred             ------------eEEe-ccCCCCEEEEEECCC-CcEEEEEc-CCCeEEEEEcCCCc----------------E-------
Q psy519          171 ------------VRVF-SDHVSPVLSIAFSPC-GKYLASGG-EDGLVLTHELTTGR----------------V-------  212 (351)
Q Consensus       171 ------------~~~~-~~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~----------------~-------  212 (351)
                                  ...+ .++. ....++|+|. |.++++=. .++.=.|.-+..+.                .       
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        0111 1222 2457999998 66554321 22211222122111                0       


Q ss_pred             ----EEEeeccCCCCEEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceee-e--------eecceeEEecCCce
Q psy519          213 ----ISRFHLQEHEPVTSLVWSV-------TGETLVTGSLTGTVQFYGWPSASKIG-I--------GVYPRCAAQPVGFE  272 (351)
Q Consensus       213 ----~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~~~~~~~~~~-~--------~~~~~~~~s~~~~~  272 (351)
                          ...+...++..+..+.|..       ++.++++.-..+.|....+.....+. .        ..+..+++.|||..
T Consensus       240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence                0111123445677777764       34456555556788888876443322 1        13456788888876


Q ss_pred             eeeeeccce
Q psy519          273 AATLAANSR  281 (351)
Q Consensus       273 ~~~~~~~~~  281 (351)
                      .++...++.
T Consensus       320 yv~~d~~G~  328 (331)
T PF07995_consen  320 YVSDDSDGK  328 (331)
T ss_dssp             EEEE-TTTT
T ss_pred             EEEECCCCe
Confidence            655554443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.31  E-value=0.12  Score=28.93  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=25.6

Q ss_pred             CCeEEEEEccCC---CEEEEEecCCCCCeEEEEEccCC
Q psy519          134 SPVLSIAFSPCG---KYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus       134 ~~i~~~~~~~~~---~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      +.++++.|+|..   .+|+.+-.   .+.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~---~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEH---QGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEcc---CCeEEEEEcccC
Confidence            368999999844   47777766   899999999953

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.24  E-value=0.14  Score=28.64  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             CCEEEEEECCCC---cEEEEEcCCCeEEEEEcCCC
Q psy519          179 SPVLSIAFSPCG---KYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       179 ~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~  210 (351)
                      +.++++.|+|+.   .+|+.+-..|.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   48888888899999999863

It contains a characteristic DLL sequence motif.

>KOG2377|consensus

Probab=95.08  E-value=1  Score=39.51  Aligned_cols=139  Identities=13%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             EEEEECCCCcEEEEeCCCcEEEEeCCCC---eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee----
Q psy519           54 WSVEACSKGLALTGSRDTTARLWSLEQM---YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV----  126 (351)
Q Consensus        54 ~~~~~~~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----  126 (351)
                      +.+-|...++.+.+-..|.+.-|.+...   -++..-....++|.++.|++|.+.+++--.+.+|.+++....+..    
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            3444554455566666666766765432   223223345679999999999999999999999999997433322    


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC-CceeEEeccCCCCEEEEEECCCCcEEEEEc
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                      .+.+.....|....|+.+ .-+|...    +..+.+|.... .+.++..+.+...|.=..|+++.+.++.++
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~----~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFIT----DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEe----cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            222334456899999876 4444443    45577776543 234555667777888888999887655443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.76  E-value=2.8  Score=37.19  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEEC----CC----------------Cc
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS----PC----------------GK  191 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~----~~----------------~~  191 (351)
                      ....+.+++.+|.+++.++...   =|.|.++|+.++..++.+++....-  +.|-    +.                ..
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDs---lGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDS---LGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcC---CCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceE
Confidence            3446788999999998888766   7999999999998888777654421  1221    00                11


Q ss_pred             EE-EEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          192 YL-ASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       192 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      +| +-+-.-|.|.||.+++|..+..+..
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            22 2345678999999999988887764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.72  E-value=3.4  Score=39.14  Aligned_cols=143  Identities=8%  Similarity=0.033  Sum_probs=87.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeE------Eec----------------cCCCCeEEEEEcc--CCCEEEEEecCCCCC
Q psy519          103 ITYIGTGSYDKAVRLWSITDGASVR------VFS----------------DHVSPVLSIAFSP--CGKYLASGGTGSYDK  158 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~~~~~------~~~----------------~~~~~i~~~~~~~--~~~~l~~~~~~~~d~  158 (351)
                      .++++++. .+.|.+|+++......      .+.                .....|..|....  +...|+.+..   ||
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D---dG  124 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD---DG  124 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec---CC
Confidence            55666654 6788898875432211      000                0112344444333  3457777777   99


Q ss_pred             eEEEEEccC-------C----c---------eeEEeccCCCCEEEEEEC--CCCcEEEEEcCCCeEEEEEcCCC--cEEE
Q psy519          159 AVRLWSITD-------G----A---------SVRVFSDHVSPVLSIAFS--PCGKYLASGGEDGLVLTHELTTG--RVIS  214 (351)
Q Consensus       159 ~i~i~d~~~-------~----~---------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~~~  214 (351)
                      .|.+|.+++       .    +         +...+ ......+.++++  ...++||+++....|.+|-....  +...
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             eEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence            999997631       0    0         11111 133467889998  77889999988888888765432  2111


Q ss_pred             EeeccCCCCEEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q psy519          215 RFHLQEHEPVTSLVWSVTG---E---TLVTGSLTGTVQFYGW  250 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~~~  250 (351)
                      .-...+...|.+++|-++.   .   +|++++-.|.+.+|++
T Consensus       204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1122344678899997743   2   7778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=1.7  Score=34.09  Aligned_cols=163  Identities=12%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      ...|++||+.+++.+....-....+..=-...-+..+ ...=.+|.-..+|.++-+.+..+. .++.=..++.  |+..|
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~L  143 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNL  143 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcce
Confidence            3569999999998776543322122211111112333 233457888999999888777765 3344455554  55556


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEec--cCCCC---EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc----
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFS--DHVSP---VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ----  219 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  219 (351)
                      +.+..   ...++.-|.++-....+..  ....+   +..+.|- ||...|-.=.+..|...|..+|+....+...    
T Consensus       144 imsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~  219 (262)
T COG3823         144 IMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK  219 (262)
T ss_pred             EeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence            66543   4566666655433322221  11122   2233443 4554443333444555566666655554321    


Q ss_pred             -------CCCCEEEEEEcCCCC-EEEEE
Q psy519          220 -------EHEPVTSLVWSVTGE-TLVTG  239 (351)
Q Consensus       220 -------~~~~v~~~~~~~~~~-~l~~~  239 (351)
                             +..-.+.+++.|++. ++++|
T Consensus       220 ~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         220 ELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             hcCccccccccccceeecCcCCeEEEec
Confidence                   223567888888774 45554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.63  E-value=0.74  Score=37.44  Aligned_cols=142  Identities=13%  Similarity=0.105  Sum_probs=78.3

Q ss_pred             EEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC---CceeEEec---cCCCCEEEEEECC
Q psy519          115 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD---GASVRVFS---DHVSPVLSIAFSP  188 (351)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~---~~~~~~~~---~~~~~i~~~~~~~  188 (351)
                      -.+||+.+++....-........+-.+-+||+++.+|+.......+++++...   ........   .....-.....-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            45889888765433222233334456778999999998754456688888654   11111110   1122233445567


Q ss_pred             CCcEEEEEcCCCe-EEEEEcCC-CcEEEEe--ecc-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          189 CGKYLASGGEDGL-VLTHELTT-GRVISRF--HLQ-----EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       189 ~~~~l~~~~~dg~-i~i~d~~~-~~~~~~~--~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ||+.|+.|+...- ..+|.-+. ......+  ...     ...-.--+...|+|++++.+..+.  .|||..+.+.++.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            9999999887643 34444321 1111111  100     111233466678999998887654  5568877755443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.59  E-value=0.92  Score=40.45  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             EEEECCCCc--------EEEEeCCCcEEEEeCCC-CeeeEEeeCCCCCeEEEEEeC----CCCEEEEEeCCCcEEEEeCC
Q psy519           55 SVEACSKGL--------ALTGSRDTTARLWSLEQ-MYPLRIFVGHKQDVTCARFHP----KITYIGTGSYDKAVRLWSIT  121 (351)
Q Consensus        55 ~~~~~~~~~--------~~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~dg~i~i~d~~  121 (351)
                      -+.|.|+.+        -+.|-.+..|.-.|.+- +..+.... .....+--.|+.    ...+++.++..|.|++||.-
T Consensus       513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi  591 (776)
T COG5167         513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI  591 (776)
T ss_pred             eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhh
Confidence            567777642        25677777777677652 22222211 122222222222    34599999999999999965


Q ss_pred             CCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519          122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      ..+....+.+....|..+..+.+|+++++.+    ...+.+-|++
T Consensus       592 g~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d~~  632 (776)
T COG5167         592 GKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTDVP  632 (776)
T ss_pred             cchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEecc
Confidence            5555556677788999999999999988877    5788888875

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.56  E-value=3.1  Score=36.83  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             EEEECCCCcEEEEeCCCcEEE-EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-----eeEE
Q psy519           55 SVEACSKGLALTGSRDTTARL-WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-----SVRV  128 (351)
Q Consensus        55 ~~~~~~~~~~~~~~~d~~i~v-w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~  128 (351)
                      .+..++++.++..+..|.+.. ||-....-...-......+..+.+.+++..++++ .+|.+. +....++     ....
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~  320 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEE  320 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceee
Confidence            345567776755555554332 3322110011122345578899999998877765 456653 3334443     1222


Q ss_pred             ecc--CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec---cCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          129 FSD--HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS---DHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       129 ~~~--~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      ...  ....+.++.|.+++..+++|.    .|.+.... ..++.-....   .-....+.+.|.++++-+++| .+|.|.
T Consensus       321 ~~~~~~~~~l~~v~~~~d~~~~a~G~----~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il  394 (398)
T PLN00033        321 ADIKSRGFGILDVGYRSKKEAWAAGG----SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL  394 (398)
T ss_pred             cccCCCCcceEEEEEcCCCcEEEEEC----CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence            221  224588999998888877774    67665543 4454433322   234568899998776666665 567665


Q ss_pred             EE
Q psy519          204 TH  205 (351)
Q Consensus       204 i~  205 (351)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            44

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.48  E-value=3.4  Score=39.16  Aligned_cols=145  Identities=14%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeE------Eec----------------cCCCCEEEEEECC--CCcEEEEEcCCC
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVR------VFS----------------DHVSPVLSIAFSP--CGKYLASGGEDG  200 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~------~~~----------------~~~~~i~~~~~~~--~~~~l~~~~~dg  200 (351)
                      .++++++.    .+.|.+|+++.-....      .+.                .....|..|....  +...|+.+..||
T Consensus        49 ~n~LFiA~----~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG  124 (717)
T PF08728_consen   49 RNLLFIAY----QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDG  124 (717)
T ss_pred             CCEEEEEE----CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCC
Confidence            66677665    6889999876432111      110                0112355554443  456888999999


Q ss_pred             eEEEEEcCC-------C----cE-------EEEeeccCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCC--ce---
Q psy519          201 LVLTHELTT-------G----RV-------ISRFHLQEHEPVTSLVWS--VTGETLVTGSLTGTVQFYGWPSA--SK---  255 (351)
Q Consensus       201 ~i~i~d~~~-------~----~~-------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~~~~~~--~~---  255 (351)
                      .|.+|.+++       .    ..       ...+........++++++  ...++||+++....|.||-....  +.   
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV  204 (717)
T ss_pred             eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence            999997621       0    00       011222334578999998  78889999988888888866542  11   


Q ss_pred             ---eeeeecceeEEecCC-----c-eeeeeeccceeeEEEe-eeceeC
Q psy519          256 ---IGIGVYPRCAAQPVG-----F-EAATLAANSRVRTLRE-MHEIVG  293 (351)
Q Consensus       256 ---~~~~~~~~~~~s~~~-----~-~~~~~~~~~~~~~~~~-~~~~~g  293 (351)
                         .....++.+.|-++.     . .+++..-.|.+-++++ |....|
T Consensus       205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~~~~~~g  252 (717)
T PF08728_consen  205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIKFKEGRG  252 (717)
T ss_pred             cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEEEeeccC
Confidence               123567788886654     2 5777888888889888 666666

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377|consensus

Probab=94.47  E-value=3.3  Score=36.63  Aligned_cols=152  Identities=12%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce-
Q psy519           95 TCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS-  170 (351)
Q Consensus        95 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~-  170 (351)
                      +.+-|. |.+..+.+...|.+.-|-+....   ++..-....++|.++.|++|.+.+|+--.   +..|.+++....+. 
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~---~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRT---SKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEec---CceEEEEecCCCchh
Confidence            344444 33333344445666666554321   22222335679999999999999999877   99999999743222 


Q ss_pred             ---eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc-EEEEeeccCCCCEEEEEEcCCCCEEEEEe--CCCe
Q psy519          171 ---VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR-VISRFHLQEHEPVTSLVWSVTGETLVTGS--LTGT  244 (351)
Q Consensus       171 ---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~  244 (351)
                         ..+.+.....|....|+.+ .-+|.-+..| +-+|-....+ .++.. ..+.-.|.-..|.++-+.+..++  ..+.
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV-ks~~~nvnWy~yc~et~v~LL~t~~~~n~  178 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV-KSHNLNVNWYMYCPETAVILLSTTVLENV  178 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh-hhcccCccEEEEccccceEeeeccccccc
Confidence               2223344556889999866 4455544444 5666543322 22222 24556788888988877544333  3444


Q ss_pred             EEEEeCCCC
Q psy519          245 VQFYGWPSA  253 (351)
Q Consensus       245 i~i~~~~~~  253 (351)
                      +.=+.++.+
T Consensus       179 lnpf~~~~~  187 (657)
T KOG2377|consen  179 LNPFHFRAG  187 (657)
T ss_pred             cccEEEeec
Confidence            444444444

>KOG1897|consensus

Probab=94.40  E-value=5.3  Score=38.85  Aligned_cols=255  Identities=11%  Similarity=0.031  Sum_probs=131.4

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC------cE-EEEeCCCcEEEEeC-C
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG------LA-LTGSRDTTARLWSL-E   79 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~------~~-~~~~~d~~i~vw~~-~   79 (351)
                      ++....+.+  ...++.++.++.+........      ...-...|.|+.++|-|      ++ +.|..+..+.+.-. .
T Consensus       490 ~ti~~~~~n--~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  490 ITIGVVSAN--ASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             eEEEEEeec--ceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            333333444  344555555555555454443      23345789999999753      24 77777766555432 3


Q ss_pred             CCeeeEEe-eC---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC--CCceeEEe--ccCCCCeEEEEEccCCC-EEEE
Q psy519           80 QMYPLRIF-VG---HKQDVTCARFHPKITYIGTGSYDKAVRLWSIT--DGASVRVF--SDHVSPVLSIAFSPCGK-YLAS  150 (351)
Q Consensus        80 ~~~~~~~~-~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~--~~~~~~i~~~~~~~~~~-~l~~  150 (351)
                      +...+... ..   -...|.-..+-.|..+|.++..||.+.-|.+.  ++..-...  .-...|+.=-.|+..+. .+++
T Consensus       568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa  647 (1096)
T KOG1897|consen  568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA  647 (1096)
T ss_pred             CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence            33222211 11   12234444555567899999999998766554  44322111  11234555455655444 4444


Q ss_pred             EecCCCCCeEEEEEccCCceeEEeccCCCCEE-EEEECCC--CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEE
Q psy519          151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVL-SIAFSPC--GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL  227 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  227 (351)
                      + .   |+-..+|.- +++....--... .+. ...|+.+  ...++++. .+.+++.-+..-+.+..-..+-...++.+
T Consensus       648 ~-s---drP~viY~~-n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI  720 (1096)
T KOG1897|consen  648 L-S---DRPTVIYSS-NGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRI  720 (1096)
T ss_pred             e-C---CCCEEEEec-CCcEEEeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhhe
Confidence            4 4   677777764 333332211111 111 1122221  23455554 45577776665554444334556677888


Q ss_pred             EEcCCCCEEEEEeCC--------------CeEEEEeCCCCceeee---------eecceeEEecC-Cceeeeee
Q psy519          228 VWSVTGETLVTGSLT--------------GTVQFYGWPSASKIGI---------GVYPRCAAQPV-GFEAATLA  277 (351)
Q Consensus       228 ~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~~~~~---------~~~~~~~~s~~-~~~~~~~~  277 (351)
                      ++.+....+++.+..              ..++++|-++.+.++.         ..+.++.|.-| +.++++++
T Consensus       721 ~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT  794 (1096)
T KOG1897|consen  721 CYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT  794 (1096)
T ss_pred             EecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence            888755555544321              2477788777776654         23334556666 44555443

>KOG1916|consensus

Probab=94.38  E-value=0.15  Score=48.24  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=42.9

Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCC-----CCceeEEeccCC-CCeEEEEEccCC-------C--EEEEEecCCCCCeEEEE
Q psy519           99 FHPKITYIGTGSYDKAVRLWSIT-----DGASVRVFSDHV-SPVLSIAFSPCG-------K--YLASGGTGSYDKAVRLW  163 (351)
Q Consensus        99 ~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~-~~i~~~~~~~~~-------~--~l~~~~~~~~d~~i~i~  163 (351)
                      .+|||..++.++.||.+++|.+.     ..+++...+.|. .+-.|.-++.+.       .  +++++..  .+..+++|
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd--~nre~k~w  320 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD--VNREEKFW  320 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc--CCcceeEe
Confidence            68899999999999988888763     223444555555 343343344322       1  3344332  26678888


Q ss_pred             EccCCcee
Q psy519          164 SITDGASV  171 (351)
Q Consensus       164 d~~~~~~~  171 (351)
                      .-...+++
T Consensus       321 ~~a~w~Cl  328 (1283)
T KOG1916|consen  321 AEAPWQCL  328 (1283)
T ss_pred             eccchhhh
Confidence            86665554

>KOG2247|consensus

Probab=94.37  E-value=0.005  Score=53.61  Aligned_cols=145  Identities=15%  Similarity=0.195  Sum_probs=97.7

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE
Q psy519           94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV  173 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~  173 (351)
                      .....|-|.+.-++.++.+-.+..||-. ++...... .++....++|+-++..++....  ..+.+.+||+.+... .+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eyt-qq  111 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYT-QQ  111 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhH-HH
Confidence            3456788877778888888899999943 44444433 4456667889888877665433  278999999976422 11


Q ss_pred             ec-cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          174 FS-DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       174 ~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      ++ +....-.-+.|++....++.+...|.+.+|+..+.+.+... ..|...+.++++.+.+. .+.++.|..+
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccce-eeecCcHHHH
Confidence            11 11122223789999999999999999999998877665543 23667889999988664 4444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.34  E-value=0.49  Score=36.49  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=26.3

Q ss_pred             CCEEEEEEcCCC------CEEEEEeCCCeEEEEeCCCC
Q psy519          222 EPVTSLVWSVTG------ETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       222 ~~v~~~~~~~~~------~~l~~~~~dg~i~i~~~~~~  253 (351)
                      ..+.+++|||-|      -+|++.+.+|.|.+|.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            479999999943      37889999999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983|consensus

Probab=94.12  E-value=3.1  Score=41.59  Aligned_cols=225  Identities=18%  Similarity=0.096  Sum_probs=102.5

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc--cCCCccc----eEEEEECCC-CcEEEEeCCCcEEEEeCCCCe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--TSGHDMT----VWSVEACSK-GLALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~----i~~~~~~~~-~~~~~~~~d~~i~vw~~~~~~   82 (351)
                      -......++|+|.  ..++|.+..+|.|++|-....  ...|...    +..+.+-.. ........+..+.+|......
T Consensus        34 ~~~~~~~~afD~~--q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~  111 (993)
T KOG1983|consen   34 FPSTPSALAFDPT--QGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT  111 (993)
T ss_pred             CCCCCcceeeccc--cceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc
Confidence            3455677899999  999999999999999987654  1111111    111111111 111223334445555443221


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCCeEEE-EEcc-CCCE-EEEEecCCCCC
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSPVLSI-AFSP-CGKY-LASGGTGSYDK  158 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~-~~~~-~~~~-l~~~~~~~~d~  158 (351)
                      .+    .+...+.+..-.+--.. +.+ ..+.++.||..-....... .+....-... ...+ .-.. ....     +-
T Consensus       112 ~~----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~  180 (993)
T KOG1983|consen  112 GV----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI-----DL  180 (993)
T ss_pred             ee----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc-----cc
Confidence            11    12223333332222223 344 7788888886532211110 0000000000 0000 0000 0000     11


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                      .-.++-+....  ..+..+..++.+..+........ +...+.+.+|+.........+...+.      .+++++..+++
T Consensus       181 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~  251 (993)
T KOG1983|consen  181 DTVLISLPDAY--LGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVS  251 (993)
T ss_pred             ccceeeccccc--ccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccc------cCccCCceEEE
Confidence            11111111000  12223344444444443333333 33345666666554443333322221      11788999999


Q ss_pred             EeCCCeEEEEeCCCCcee
Q psy519          239 GSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~  256 (351)
                      +..||.+.+||...++..
T Consensus       252 ~h~Dgs~~fWd~s~g~~~  269 (993)
T KOG1983|consen  252 YHTDGSYAFWDVSSGKLQ  269 (993)
T ss_pred             EEecCCEEeeecCCCcee
Confidence            999999999999987663

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=3.1  Score=34.57  Aligned_cols=217  Identities=14%  Similarity=0.081  Sum_probs=0.0

Q ss_pred             EEEEecCCCceEEEecCCccCCCc-cceEEEEECCCCcEEEEeCCCcEEEEeCCCCe-----eeEEeeCCCCCeEEEEEe
Q psy519           27 VLANLESQKNLQSRYLPYYTSGHD-MTVWSVEACSKGLALTGSRDTTARLWSLEQMY-----PLRIFVGHKQDVTCARFH  100 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~i~~i~~~  100 (351)
                      .+++++.+|.----...-.+.+|- ..|..+..  .+.++--+....+.+.|+..-.     ..-..-.-..-+..+.++
T Consensus        18 v~It~s~~gva~d~~v~~~~vghfg~~vsavdv--~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs   95 (370)
T COG5276          18 VLITGSDDGVAVDVHVGYAYVGHFGKGVSAVDV--RGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS   95 (370)
T ss_pred             EEEeccccceeeccccceEEeeeccCCcccccc--cccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC---ceeEEeccC
Q psy519          101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG---ASVRVFSDH  177 (351)
Q Consensus       101 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~  177 (351)
                        +++...+..+.-+++.|+.+......+....-.=..-.|.-.|++..++.-   +.-+.+.|+.+.   .....+...
T Consensus        96 --e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl---ddgfLivdvsdpssP~lagrya~~  170 (370)
T COG5276          96 --EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL---DDGFLIVDVSDPSSPQLAGRYALP  170 (370)
T ss_pred             --ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec---cCcEEEEECCCCCCceeeeeeccC


Q ss_pred             CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          178 VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       178 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      ...-..++.+  |++...+..|+-+.+-|+.+......+.....+ .+.++..+++..+++...+  -+.+-|..+.+
T Consensus       171 ~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s  244 (370)
T COG5276         171 GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS  244 (370)
T ss_pred             CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCC

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.98  E-value=4.3  Score=36.15  Aligned_cols=137  Identities=13%  Similarity=0.088  Sum_probs=86.0

Q ss_pred             ccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECC---C-C-cEEEEeCCCcEEEEeCCC--Ce------
Q psy519           25 EDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACS---K-G-LALTGSRDTTARLWSLEQ--MY------   82 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~---~-~-~~~~~~~d~~i~vw~~~~--~~------   82 (351)
                      .+.|++|+.+|.++||+....         ...-..+|..++.-+   . . ..++.-.-..+.||.+..  +.      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            578999999999999998665         222346777776532   1 2 235556677788887731  11      


Q ss_pred             -eeEEeeCCCC--CeEEEEEeC----C-CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           83 -PLRIFVGHKQ--DVTCARFHP----K-ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        83 -~~~~~~~~~~--~i~~i~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                       .+.....|.-  ....+..-|    . ..+|.+-+.||.+.+|+-+.......+.. .--...+.|.+.-..+++++. 
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss-  194 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS-  194 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC-
Confidence             1222223322  223344333    2 36888899999999999765444444433 222233778888888888877 


Q ss_pred             CCCCeEEEEEc
Q psy519          155 SYDKAVRLWSI  165 (351)
Q Consensus       155 ~~d~~i~i~d~  165 (351)
                        +..+..|..
T Consensus       195 --s~~l~~Yky  203 (418)
T PF14727_consen  195 --SWTLECYKY  203 (418)
T ss_pred             --ceeEEEecH
Confidence              778888865

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=93.91  E-value=5.2  Score=36.92  Aligned_cols=179  Identities=14%  Similarity=0.135  Sum_probs=100.4

Q ss_pred             CcEEEEeCCCCeeeEEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCE
Q psy519           71 TTARLWSLEQMYPLRIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKY  147 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  147 (351)
                      +.|.|.| ++.+.+..+.  +..+.|.+++|.-+.-+++|--.---+++.|+...+..+.+-..+-+=.+=-++| +.++
T Consensus       304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~  382 (521)
T PF09826_consen  304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH  382 (521)
T ss_pred             EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence            4577777 5566666554  3567899999998888888766555688999987554433321111112223455 4445


Q ss_pred             EEEEecCCCC---------CeEEEEEccCCceeEEec---c--------CCCCEEEEEECCCCcEEEEEcC-------CC
Q psy519          148 LASGGTGSYD---------KAVRLWSITDGASVRVFS---D--------HVSPVLSIAFSPCGKYLASGGE-------DG  200 (351)
Q Consensus       148 l~~~~~~~~d---------~~i~i~d~~~~~~~~~~~---~--------~~~~i~~~~~~~~~~~l~~~~~-------dg  200 (351)
                      |+--+.....         =.|.+||+......+...   -        -...-.++.|.+..++|+.--.       -.
T Consensus       383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~  462 (521)
T PF09826_consen  383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ  462 (521)
T ss_pred             EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence            5544432212         358899988754322221   1        1112357888887777664322       13


Q ss_pred             eEEEEEcC-CCcEEEEeeccCCC-------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          201 LVLTHELT-TGRVISRFHLQEHE-------PVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       201 ~i~i~d~~-~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .+.++++. ...........|..       .+....+.  +..|.+-+ ++.|+++|+++.
T Consensus       463 g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~~i~~~~l~t~  520 (521)
T PF09826_consen  463 GAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYI--GDTLYTVS-DNGIKAYDLNTL  520 (521)
T ss_pred             eEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEE--CCEEEEEE-CCEEEEEehHhc
Confidence            46777776 33222222233333       24555543  45666665 468999988764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.53  E-value=3.9  Score=34.23  Aligned_cols=215  Identities=12%  Similarity=0.120  Sum_probs=121.7

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc------------cC-----CCccceEEEEECCCC-------------
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TS-----GHDMTVWSVEACSKG-------------   62 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~-----~~~~~i~~~~~~~~~-------------   62 (351)
                      .-.-++++|.  +.+-++....+...+|+....            ..     ......+.+.|+...             
T Consensus        24 N~WGia~~p~--~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPG--GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCC--CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            3466999999  988888888899999998711            11     123456677776322             


Q ss_pred             cEEEEeCCCcEEEEeCCCCee-----eEEee-CCCCC-eEEEEEeC--CCCEEEEE-eCCCcEEEEeCCCCceeEEeccC
Q psy519           63 LALTGSRDTTARLWSLEQMYP-----LRIFV-GHKQD-VTCARFHP--KITYIGTG-SYDKAVRLWSITDGASVRVFSDH  132 (351)
Q Consensus        63 ~~~~~~~d~~i~vw~~~~~~~-----~~~~~-~~~~~-i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  132 (351)
                      .++.+++||+|.-|...-...     ...+. ..... -..+++..  .+.+|+.+ -..++|.+||-.- .++..-...
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F  180 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSF  180 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCc
Confidence            347889999999998642211     11222 11122 34555543  34555544 4578899998532 221110000


Q ss_pred             CCCeEEEEEcc------CCCEEEEEec----------CCCCCeEEEEEccCCceeEEecc--CCCCEEEEEECC------
Q psy519          133 VSPVLSIAFSP------CGKYLASGGT----------GSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP------  188 (351)
Q Consensus       133 ~~~i~~~~~~~------~~~~l~~~~~----------~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~------  188 (351)
                      .++-.-..|.|      .++++++=..          +..-|.|-+||+ .++.++.+..  .-...+.|+..|      
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            00000001111      1222221111          001478999997 5777777732  223456777766      


Q ss_pred             CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----CCEEEEEEcC
Q psy519          189 CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----EPVTSLVWSV  231 (351)
Q Consensus       189 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~  231 (351)
                      .+.+|+---.||+|..||..+++.+-.+.....     ...+.|.|-.
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            456666656799999999999988777653332     2457777755

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.51  E-value=1.9  Score=35.07  Aligned_cols=140  Identities=14%  Similarity=0.155  Sum_probs=78.7

Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCC----CceeE---EeccCCCCeEEEEEc
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---KAVRLWSITD----GASVR---VFSDHVSPVLSIAFS  142 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~----~~~~~---~~~~~~~~i~~~~~~  142 (351)
                      -.+||+.+++..........-+.+-.+.+||+++.+|+..   ..+++++...    .....   .+. ....--+...-
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence            5688998876533222223334445677899999998752   3578888654    11111   111 22233345556


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCC-ceeEE---ecc-----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDG-ASVRV---FSD-----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~---~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      |||+.|+.|+..  ......|.-+.. .....   +..     ...---.+...|+|++|+.+..+.  .|||..+.+.+
T Consensus       127 ~DG~vlIvGG~~--~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~  202 (243)
T PF07250_consen  127 PDGRVLIVGGSN--NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV  202 (243)
T ss_pred             CCCCEEEEeCcC--CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence            799999999872  334555554221 11111   110     011122456789999999987654  56788887766


Q ss_pred             EEee
Q psy519          214 SRFH  217 (351)
Q Consensus       214 ~~~~  217 (351)
                      +.+.
T Consensus       203 ~~lP  206 (243)
T PF07250_consen  203 RTLP  206 (243)
T ss_pred             eeCC
Confidence            6553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.42  E-value=0.9  Score=36.52  Aligned_cols=64  Identities=11%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-------c-------cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           99 FHPKITYIGTGSYDKAVRLWSITDGASVRVF-------S-------DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        99 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      +..+++++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+    +|..+.||
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CCCEEEec
Confidence            3456788999999999999999987754321       1       2446677788887777776654    67778887


Q ss_pred             cc
Q psy519          165 IT  166 (351)
Q Consensus       165 ~~  166 (351)
                      ..
T Consensus        94 ~~   95 (219)
T PF07569_consen   94 PD   95 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.34  E-value=3.2  Score=34.76  Aligned_cols=118  Identities=9%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCCceeEEec----cCCCCeEEE
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS------YDKAVRLWSITDGASVRVFS----DHVSPVLSI  139 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~  139 (351)
                      -..|++||..+.+-...-.+-.+.|+.+.|..+.++++.|.      ....+..||..+......-.    .-.+++..+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            35699999888765544445667899999986666666664      34578899987765422222    134788888


Q ss_pred             EEcc-CCC-EEEEEecCCCCCeEEEEEccCCceeEE-eccCCCCEEEEEEC
Q psy519          140 AFSP-CGK-YLASGGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFS  187 (351)
Q Consensus       140 ~~~~-~~~-~l~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~  187 (351)
                      .+.. ++. +.+.|.....+..|.-||=.+...+.. .......|..+.+-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            7743 443 343443222245577776444333322 11223345555443

>KOG1898|consensus

Probab=93.34  E-value=8.9  Score=37.74  Aligned_cols=170  Identities=14%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             EEEEeCCCCceeEEeccCC----CCeEEEEEccCCC--EEEEEecC--------CCCCeEEEEEcc-CCceeEEeccCCC
Q psy519          115 VRLWSITDGASVRVFSDHV----SPVLSIAFSPCGK--YLASGGTG--------SYDKAVRLWSIT-DGASVRVFSDHVS  179 (351)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~--~l~~~~~~--------~~d~~i~i~d~~-~~~~~~~~~~~~~  179 (351)
                      |+++|..+++.+..+....    -.+..+.|+..+.  +++++...        -.+|.++.|++- .++.+..+....-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            6777776666555443221    2455666665333  34444321        024567777754 3443333322222


Q ss_pred             CEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Ccee
Q psy519          180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS--ASKI  256 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~~~~  256 (351)
                      +-.-.+.+|-..++++|- ...+++||+...+.++..+.+. ...|..+.+  .+..+++|...-.+.++..+.  .+.+
T Consensus       935 ~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred             CccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEE
Confidence            222346677666666664 4689999998887777665544 355777776  466777877665665554433  3333


Q ss_pred             ee--eec---ceeEEecCCceeeeeeccceeeEEEe
Q psy519          257 GI--GVY---PRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       257 ~~--~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ..  .++   .....--|...++.+..-|+...+|+
T Consensus      1012 ~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             EEeCCCccceeeEEEEecCCceeeccccCcEEEEEC
Confidence            22  111   12233334444555555555555554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.33  E-value=3.9  Score=33.65  Aligned_cols=233  Identities=13%  Similarity=0.059  Sum_probs=134.2

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ..-..++-+||  |..-.++...+.|--.|-.++     ..+....-..+..-|||.. ++-+.. -|.-.|.++.+..+
T Consensus        62 ~ap~dvapapd--G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPD--GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCC--CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence            34456777777  777776666555555555444     2233344456677788876 543333 56666666654332


Q ss_pred             E---eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           86 I---FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        86 ~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      .   .+..........|.+.|++-+++.. |.---.|..++ .++.+.. ....-+.|+..|+|..-++...   +..|.
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyasla---gnaia  213 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLA---GNAIA  213 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEecc---ccceE
Confidence            1   1223456777889999988888753 21111122111 1222211 2344567899999998888766   77888


Q ss_pred             EEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEE
Q psy519          162 LWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVT  238 (351)
Q Consensus       162 i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  238 (351)
                      ..|..++.....  -.......+.+--+|.|..-++-...+.+..||..+.. -.++.+... ....++.....++.-.+
T Consensus       214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~s  292 (353)
T COG4257         214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLS  292 (353)
T ss_pred             EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEee
Confidence            888776632211  12222344566667788888887778889999876654 333444333 34556666655655554


Q ss_pred             EeCCCeEEEEeCCCC
Q psy519          239 GSLTGTVQFYGWPSA  253 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~  253 (351)
                      --..|.|.-+|-++.
T Consensus       293 ea~agai~rfdpeta  307 (353)
T COG4257         293 EADAGAIGRFDPETA  307 (353)
T ss_pred             ccccCceeecCcccc
Confidence            444456666665543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.15  E-value=6.8  Score=35.86  Aligned_cols=138  Identities=14%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC---EEEEEEC
Q psy519          111 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP---VLSIAFS  187 (351)
Q Consensus       111 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~  187 (351)
                      ..+...++|. .|.....+.........+...++|.+++..     ...+..+|+ .|+.+..+......   -..+..-
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-----~~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l  198 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGS-----GNRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDEL  198 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEE-----BTEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEec-----CCceEEEcC-CCCEEEeeecCCcccccccccEEC
Confidence            3456777774 355555543222221116677888888764     478899997 46665555432221   2457788


Q ss_pred             CCCcEEEEEcC-------------CCeEEEEEcCCCcEEEEeeccCC--------------------------CCEEEEE
Q psy519          188 PCGKYLASGGE-------------DGLVLTHELTTGRVISRFHLQEH--------------------------EPVTSLV  228 (351)
Q Consensus       188 ~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~--------------------------~~v~~~~  228 (351)
                      |+|++|+.+..             .-.|...| .+|+.+..+.....                          --++++.
T Consensus       199 ~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~  277 (477)
T PF05935_consen  199 PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID  277 (477)
T ss_dssp             TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred             CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence            89998887771             12355666 66766655432110                          1378999


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          229 WSV-TGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       229 ~~~-~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +.+ ++.+|+++-.-..|...|..+++..
T Consensus       278 yd~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  278 YDPSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             EETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             EeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            999 5556666555568888887777655

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900|consensus

Probab=93.10  E-value=3  Score=41.78  Aligned_cols=158  Identities=16%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEE--------ccCCCEEEEEecCCCCCeEE
Q psy519           90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF--------SPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        90 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~~~~d~~i~  161 (351)
                      |...-..+-+-|.-+.... +.|..+.+|+.+++.....+.+....|..+..        -|.=+++++.++   --.|.
T Consensus        77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~  152 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIV  152 (1311)
T ss_pred             CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEE
Confidence            3333344445554444433 34889999999997777777666666655543        222344444444   55666


Q ss_pred             EEEccCCce---e------EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE--EEcCCC---cE---------------
Q psy519          162 LWSITDGAS---V------RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT--HELTTG---RV---------------  212 (351)
Q Consensus       162 i~d~~~~~~---~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~---~~---------------  212 (351)
                      ++-+.-.+.   .      ..+......|.++....+|+.+++|- ||.++-  |...++   +.               
T Consensus       153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             EEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            665432211   1      11222345688888777888887775 554432  222221   10               


Q ss_pred             --EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          213 --ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       213 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                        +..+...+..+|..+........+.+-+..|.|.+|++..
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence              1111123346899999998888999999999999999976

>KOG1900|consensus

Probab=92.90  E-value=4.3  Score=40.72  Aligned_cols=166  Identities=15%  Similarity=0.140  Sum_probs=100.9

Q ss_pred             EEEecCCc---cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEE-eC-------CCCEE
Q psy519           38 QSRYLPYY---TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF-HP-------KITYI  106 (351)
Q Consensus        38 ~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~-~~-------~~~~l  106 (351)
                      .+|.++..   ...|...-..+-+-|.=..+=.+-|+.+.+|+.+++.....+.+-...|..+.. -|       .=+++
T Consensus        63 ~v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqhl  142 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFSNIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHL  142 (1311)
T ss_pred             ccccCCHHHHHHhcCcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhhee
Confidence            34555554   122333233333334433344567899999999998777777776666666543 22       22344


Q ss_pred             EEEeCCCcEEEEeCCCC----ce-----eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc----CC---c-
Q psy519          107 GTGSYDKAVRLWSITDG----AS-----VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT----DG---A-  169 (351)
Q Consensus       107 ~~~~~dg~i~i~d~~~~----~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~----~~---~-  169 (351)
                      +..+.--.|.++-+.-.    ..     ...+...+..|.|+....+|+.+++|-    ||  .+|.+.    .+   + 
T Consensus       143 LvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~----dg--~lyEl~Yq~~~gWf~~r  216 (1311)
T KOG1900|consen  143 LVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR----DG--NLYELVYQAEDGWFGSR  216 (1311)
T ss_pred             EEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec----CC--CEEEEEEeccCchhhcc
Confidence            44444555666644211    11     012223456789999888999888875    66  444431    11   1 


Q ss_pred             e----------------eEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          170 S----------------VRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       170 ~----------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      +                +..+. .+..+|..+......+.+.+-++.|.|.+||+..
T Consensus       217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            0                11122 4567999999998888999999999999999975

>KOG2280|consensus

Probab=92.54  E-value=9.6  Score=36.05  Aligned_cols=169  Identities=14%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCccCC--------CccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSG--------HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ++..+.|+.+  ..+|+ ...+|++++|++......        ....|..+.+..+|..+....+..+.+-+.+... .
T Consensus        85 ~lI~mgWs~~--eeLI~-v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~-~  160 (829)
T KOG2280|consen   85 ELIGMGWSDD--EELIC-VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPK-L  160 (829)
T ss_pred             CeeeecccCC--ceEEE-EeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcch-h
Confidence            7889999988  55554 569999999999776222        2234555666666665333333333333433321 2


Q ss_pred             EEeeC---CCCCeEEEEEeCCCC---EEEEEe-CCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           85 RIFVG---HKQDVTCARFHPKIT---YIGTGS-YDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        85 ~~~~~---~~~~i~~i~~~~~~~---~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      +.+..   ...+-.|-...+++.   .++-.. ..+ ..++...+.. ....+......+..+..||+.++|+.-..   
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~---  236 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE---  236 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec---
Confidence            22211   111112222222221   111111 011 1122222211 12222223366788999999999998877   


Q ss_pred             CCeEEEEEccCCceeEEec--cCCCCEEEEEECCCC
Q psy519          157 DKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCG  190 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~  190 (351)
                      .|.|.+-+....+....+.  .|. +...++|+.+.
T Consensus       237 ~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  237 TGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             CCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence            8999998877666665554  332 33478887654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.49  E-value=4.3  Score=31.93  Aligned_cols=153  Identities=11%  Similarity=0.052  Sum_probs=89.2

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEE-EEecCCCCCeEEEEEccCCceeEEeccCC
Q psy519          102 KITYIGTGSYD--KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGTGSYDKAVRLWSITDGASVRVFSDHV  178 (351)
Q Consensus       102 ~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  178 (351)
                      ++.++.+.+.-  ..|+.||+++++.+..-+-....+..=-...-|..+. ..-.   ++.-..+|.++-+.+..+. .+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~---egvaf~~d~~t~~~lg~~~-y~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK---EGVAFKYDADTLEELGRFS-YE  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec---cceeEEEChHHhhhhcccc-cC
Confidence            45566665543  4699999999887655432211221111111223222 2234   8889999998888777663 34


Q ss_pred             CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      +.-..++.  |++.|+.+.....++.-|.++-....++.....    ..++.+.|- +|...|-.=.+..|...+..+|+
T Consensus       131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            44556654  566677776667788777766554444433222    234455553 56666655556677777777877


Q ss_pred             eeeeeec
Q psy519          255 KIGIGVY  261 (351)
Q Consensus       255 ~~~~~~~  261 (351)
                      .+....+
T Consensus       208 V~~widl  214 (262)
T COG3823         208 VVAWIDL  214 (262)
T ss_pred             EEEEEEc
Confidence            7765443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.48  E-value=0.95  Score=25.01  Aligned_cols=41  Identities=15%  Similarity=0.204  Sum_probs=28.5

Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEE
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF  186 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  186 (351)
                      |+++.|+++...  ++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            577777776542  789999999888887777653 33345544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.45  E-value=0.93  Score=36.44  Aligned_cols=61  Identities=13%  Similarity=0.048  Sum_probs=43.1

Q ss_pred             ecCCccccEEEEecCCCceEEEecCCc------------cC-------CCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519           19 FKPETVEDVLANLESQKNLQSRYLPYY------------TS-------GHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus        19 ~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~-------~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      +...  +.+|++.+.+|.+++||+...            +.       .....|..+..+.+|.-+..-.+|..+.|+..
T Consensus        18 l~~~--~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECN--GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeC--CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3445  889999999999999999987            11       34566777777777766444455677777755


Q ss_pred             CC
Q psy519           80 QM   81 (351)
Q Consensus        80 ~~   81 (351)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            33

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460|consensus

Probab=92.13  E-value=5.2  Score=36.08  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             CeEEEEEccCCCEEEEEecCCCCCeEEEEEc---------cCCceeEEec-----------cCCCCEEEEEECCCC---c
Q psy519          135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSI---------TDGASVRVFS-----------DHVSPVLSIAFSPCG---K  191 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~---------~~~~~~~~~~-----------~~~~~i~~~~~~~~~---~  191 (351)
                      .|..+..++.|..++..+.   +|.+.++=.         ..|+......           ...-.+..++|+|+.   .
T Consensus       105 eV~~vl~s~~GS~VaL~G~---~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGI---KGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEecCCCceEEEecC---CeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            4667788999999988887   776555431         2232221111           122346788999965   6


Q ss_pred             EEEEEcCCCeEEEEEcCCCcEEE
Q psy519          192 YLASGGEDGLVLTHELTTGRVIS  214 (351)
Q Consensus       192 ~l~~~~~dg~i~i~d~~~~~~~~  214 (351)
                      .|..-+.|..+++||+.....+.
T Consensus       182 hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhh
Confidence            77788889999999998766553

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.09  E-value=1.6  Score=33.65  Aligned_cols=31  Identities=32%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             CCeEEEEEccCC------CEEEEEecCCCCCeEEEEEccC
Q psy519          134 SPVLSIAFSPCG------KYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus       134 ~~i~~~~~~~~~------~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      ..+..++|||.|      .+|++.+.   ++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs---~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTS---NGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcC---CCeEEEEecCC
Confidence            478999999954      46777777   99999998543

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1898|consensus

Probab=91.91  E-value=14  Score=36.50  Aligned_cols=171  Identities=15%  Similarity=0.157  Sum_probs=97.3

Q ss_pred             cEEEEeCCCCeeeEEeeCCC----CCeEEEEEeCCCC--EEEEEe-----------CCCcEEEEeCC-CCceeEEecc--
Q psy519           72 TARLWSLEQMYPLRIFVGHK----QDVTCARFHPKIT--YIGTGS-----------YDKAVRLWSIT-DGASVRVFSD--  131 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~----~~i~~i~~~~~~~--~l~~~~-----------~dg~i~i~d~~-~~~~~~~~~~--  131 (351)
                      .|++.|..+++.+..+....    ..+....|+....  +++++.           .+|.++.|++- .++.+..+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            58899988887665553222    2455566655332  333332           24557777753 3444433322  


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEE--EEc
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLT--HEL  207 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~  207 (351)
                      -.+++  .+..|-..++++|-    ...+++||+-..+.++....  ....|..+++.  +..+++|...-.+.+  |+.
T Consensus       934 ~~~~v--~Ai~~f~~~~Lagv----G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  934 IPGPV--GAICPFQGRVLAGV----GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             CCccc--eEEeccCCEEEEec----ccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEec
Confidence            23344  45556555666654    67999999987766655432  24456677764  667777765444544  443


Q ss_pred             CCCcEEEEeec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          208 TTGRVISRFHL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       208 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      .. +.+..+.- ..+..|+.+.+- |...+|.+..-|.+.+-.++.
T Consensus      1006 ~~-n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 ED-NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CC-CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            33 33433421 122345555543 556688888888888887764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.82  E-value=9.5  Score=34.42  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEe----c-cCCCCeEEEEEccCC------CEEEEEecCC-
Q psy519           90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS--VRVF----S-DHVSPVLSIAFSPCG------KYLASGGTGS-  155 (351)
Q Consensus        90 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~-~~~~~i~~~~~~~~~------~~l~~~~~~~-  155 (351)
                      .-...+.|+|.||+++|++--..|.|++++..++..  +..+    . ........|+++|+-      .+|.+..... 
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            344568999999998776654469999998655432  1111    1 135678999999874      3454443110 


Q ss_pred             ------CCCeEEEEEccCC-----ceeEEecc----CCCCEEEEEECCCCcEEEEEcC
Q psy519          156 ------YDKAVRLWSITDG-----ASVRVFSD----HVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       156 ------~d~~i~i~d~~~~-----~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                            ....|.-|.+...     .....+..    ....-..|.|.|||+++++.+.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                  0234555554321     01111111    0112357889999986665544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.56  E-value=8.4  Score=33.24  Aligned_cols=138  Identities=12%  Similarity=0.122  Sum_probs=80.1

Q ss_pred             CccceEEeeecCCccccEEEEecCCCc------eEEEecCCc--------------cCCCcc--------ceEEEEECCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKN------LQSRYLPYY--------------TSGHDM--------TVWSVEACSK   61 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~------i~i~~~~~~--------------~~~~~~--------~i~~~~~~~~   61 (351)
                      .-+.+..+.+.|+  +..+++.+.+|.      +...++...              +....+        ..-+|++.++
T Consensus        18 ~~GGlSgl~~~~~--~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~   95 (326)
T PF13449_consen   18 PFGGLSGLDYDPD--DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD   95 (326)
T ss_pred             ccCcEeeEEEeCC--CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC
Confidence            3466788999976  555666667776      555555441              111111        2336777778


Q ss_pred             CcE-EEEeCC------CcEEEEeCCCCeeeEEee---------------CCCCCeEEEEEeCCCCEEEEEeCC-----C-
Q psy519           62 GLA-LTGSRD------TTARLWSLEQMYPLRIFV---------------GHKQDVTCARFHPKITYIGTGSYD-----K-  113 (351)
Q Consensus        62 ~~~-~~~~~d------~~i~vw~~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~l~~~~~d-----g-  113 (351)
                      |.+ ++.-.+      ..|+.++.. |+....+.               ..+...-+++++|+|+.|+++...     + 
T Consensus        96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            888 555455      678888876 55443331               134567899999999977666432     1 


Q ss_pred             ----------cEEEEeCCC-CceeEE----ecc-----CCCCeEEEEEccCCCEEEE
Q psy519          114 ----------AVRLWSITD-GASVRV----FSD-----HVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus       114 ----------~i~i~d~~~-~~~~~~----~~~-----~~~~i~~~~~~~~~~~l~~  150 (351)
                                .+..||..+ ++....    +..     ....+..+.+-+++++++.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                      233445444 222222    221     3456777777777775554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.49  E-value=4.1  Score=29.55  Aligned_cols=107  Identities=8%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCc--------eeEEeccCCCCeEEEEEcc-----CCCEEEEEecCCCCCeEEEE
Q psy519           97 ARFHPKITYIGTGSYDKAVRLWSITDGA--------SVRVFSDHVSPVLSIAFSP-----CGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        97 i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~~~d~~i~i~  163 (351)
                      -+|......|+.++..|.|.+++.....        .++.+. ....|++++-.+     +...|+.|+    ...+..|
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt----~t~llaY   78 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT----QTSLLAY   78 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec----cceEEEE
Confidence            3565556678888889999999876432        333343 456777776544     345677775    6899999


Q ss_pred             EccCCceeEEeccCCCCEEEEEECC---CCcEEEEEcCCCeEEEEEcCC
Q psy519          164 SITDGASVRVFSDHVSPVLSIAFSP---CGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       164 d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      |+.+...+..- .....+.++.+-.   ...-++..+.+..|.=||...
T Consensus        79 DV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   79 DVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             EcccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            99877554332 3345577776632   122344444467777777643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.38  E-value=1.7  Score=40.58  Aligned_cols=74  Identities=19%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             CCCcEEEEEcCCCeEEEEEcCC----CcEEEEeecc---------------------CCCCEEEEEEcC----CCCEEEE
Q psy519          188 PCGKYLASGGEDGLVLTHELTT----GRVISRFHLQ---------------------EHEPVTSLVWSV----TGETLVT  238 (351)
Q Consensus       188 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~---------------------~~~~v~~~~~~~----~~~~l~~  238 (351)
                      ++...++++..||.+.......    +.........                     .......+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777777888887777653    2222111100                     113456666666    7789999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeec
Q psy519          239 GSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      .+.|+.+++||+.+++.+....+
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999665433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.86  E-value=5  Score=38.16  Aligned_cols=171  Identities=12%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEEC--------------------
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEAC--------------------   59 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~--------------------   59 (351)
                      ...|.+.+||.|  .+.++....+..|.+++-.-.           +... +.-..+-|-                    
T Consensus       112 ~nGIvaa~wS~D--E~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef-~khi~VgWgkketqfrgk~~raqlrdptm  188 (1243)
T COG5290         112 SNGIVAASWSAD--EKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEF-GKHIRVGWGKKETQFRGKGARAQLRDPTM  188 (1243)
T ss_pred             cCceEEEeeccC--CceEEEEEcCceEEEEeccccccchhhcchhHHHHh-ccceEeeecccchhccccchhhhccCCCC
Confidence            467888999999  887777777778877764322           0000 111123333                    


Q ss_pred             ----CCCcEEEEeCCCcEEEE--eCC--------CC--eeeEEee------CCCCCeE----EEEEeCCCCEEEEEeCCC
Q psy519           60 ----SKGLALTGSRDTTARLW--SLE--------QM--YPLRIFV------GHKQDVT----CARFHPKITYIGTGSYDK  113 (351)
Q Consensus        60 ----~~~~~~~~~~d~~i~vw--~~~--------~~--~~~~~~~------~~~~~i~----~i~~~~~~~~l~~~~~dg  113 (351)
                          ..|.+........+..|  |.+        .+  +..+.+.      ....+++    .+.|-|+|..+++-..||
T Consensus       189 p~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~  268 (1243)
T COG5290         189 PYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG  268 (1243)
T ss_pred             cccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCC
Confidence                22444344445566667  321        00  1111121      1122333    478999999999877654


Q ss_pred             -----cEEEEeCCCCceeEEe---ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEE
Q psy519          114 -----AVRLWSITDGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA  185 (351)
Q Consensus       114 -----~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  185 (351)
                           .|.++... |-....+   .+....+...+|+-....++.+.    .+.+++|-..+-.=-......-..+.-+.
T Consensus       269 ~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~----~n~~~lwttkNyhWYLK~e~~ip~~s~vk  343 (1243)
T COG5290         269 CSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE----GNLLKLWTTKNYHWYLKVERQIPGISYVK  343 (1243)
T ss_pred             CCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh----cceEEEEEccceEEEEEEeecCCCcceee
Confidence                 45565532 2211111   12334556677876666666553    67899998655321111112223456678


Q ss_pred             ECCC
Q psy519          186 FSPC  189 (351)
Q Consensus       186 ~~~~  189 (351)
                      |+|.
T Consensus       344 whpe  347 (1243)
T COG5290         344 WHPE  347 (1243)
T ss_pred             eccc
Confidence            8884

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.57  E-value=13  Score=33.52  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.51  E-value=1.8  Score=23.80  Aligned_cols=40  Identities=18%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             CCCcEEEEEc-CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEE
Q psy519          188 PCGKYLASGG-EDGLVLTHELTTGRVISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       188 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  229 (351)
                      |++++|+++. .++.|.++|..+++.+..+..  ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v--g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV--GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC--CCCCceEEe
Confidence            5777666655 478999999999888888764  233445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.43  E-value=12  Score=32.98  Aligned_cols=189  Identities=13%  Similarity=0.033  Sum_probs=101.9

Q ss_pred             EEEEecCCCceEEEecCCcc-------CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeEEEE
Q psy519           27 VLANLESQKNLQSRYLPYYT-------SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK-QDVTCAR   98 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~~i~   98 (351)
                      .+.++..+|.+.-.|..+..       ......+..-.+..+|+++.++.++.++.+|..+++.+..+.... ..+..-.
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~  149 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP  149 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence            34444566666666665551       111123333334448899999999999999998999888776555 1111112


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCC---CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec
Q psy519           99 FHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV---SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS  175 (351)
Q Consensus        99 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~  175 (351)
                      .-.++ .++.++.++.+.-.|..+++.........   ..+..--...++. ++.+.... ++.+.-.|..+|......+
T Consensus       150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~-~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGY-DGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             EEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCC-cceEEEEEccCCcEeeeee
Confidence            22233 34444477999999988888766643221   1111111122333 33332211 3357777877777665532


Q ss_pred             cC----CCCEEEE-EEC--C--CCcEEEEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          176 DH----VSPVLSI-AFS--P--CGKYLASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       176 ~~----~~~i~~~-~~~--~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      .+    ...+... .+.  +  .+.-+..++.++.+...|..+++.+-++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            11    1111001 111  0  112235566677788889888888877654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.08  E-value=14  Score=33.36  Aligned_cols=108  Identities=10%  Similarity=0.082  Sum_probs=60.3

Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce--eEEec-----cCCCCEEEEEECCCC------cEEEEEc-
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS--VRVFS-----DHVSPVLSIAFSPCG------KYLASGG-  197 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~--~~~~~-----~~~~~i~~~~~~~~~------~~l~~~~-  197 (351)
                      .-.....|+|.|+|++|++--.   .|.|++++-.++..  +..+.     ........|+++|+-      .+|+... 
T Consensus        28 GL~~Pw~maflPDG~llVtER~---~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt  104 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERA---TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT  104 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEec---CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence            3455688999999988777543   48999998655432  11111     135667899999874      2444432 


Q ss_pred             ---------CCCeEEEEEcCCC-------cEEE-EeeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          198 ---------EDGLVLTHELTTG-------RVIS-RFHLQEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       198 ---------~dg~i~i~d~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                               ....|.-|.+...       +.+. .+.......-..|.|.|||.+.++.++.
T Consensus       105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                     1233444544311       1111 1111111234678899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.07  E-value=2.3  Score=37.51  Aligned_cols=153  Identities=15%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-cC------CCc----cceE-EEEECCCC-cEEEEeCCCcEEEE
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-TS------GHD----MTVW-SVEACSKG-LALTGSRDTTARLW   76 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-~~------~~~----~~i~-~~~~~~~~-~~~~~~~d~~i~vw   76 (351)
                      -...|..+-..|+  |+.|..-+. .++.++++.+. ++      ...    ..|+ .+..-..| .++.+..||.|.-|
T Consensus       219 ~~~~v~qllL~Pd--g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         219 PFSDVSQLLLTPD--GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             CccchHhhEECCC--CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            3466777889999  998876654 67888888765 11      001    1111 11111223 23778889998887


Q ss_pred             -eCCCC-e----eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           77 -SLEQM-Y----PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        77 -~~~~~-~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                       |+..+ +    .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+-. ..--..+.-+++||.+.++++
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~  374 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLS  374 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchhee
Confidence             44322 2    1222222233444443333455677778888888887554443322 222235567899999999987


Q ss_pred             EecCCCCCeEEEEEccCCce
Q psy519          151 GGTGSYDKAVRLWSITDGAS  170 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~  170 (351)
                      -.    .|.++++.+++..+
T Consensus       375 e~----~gki~~~~l~Nr~P  390 (733)
T COG4590         375 ED----QGKIRLAQLENRNP  390 (733)
T ss_pred             ec----CCceEEEEecCCCC
Confidence            53    68899999877644

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.70  E-value=22  Score=34.92  Aligned_cols=156  Identities=12%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             CCccceEEEEEC---C--C--CcEEEEeCCCcEEEEeCCCC---------------eeeEEee---CCCCCeEEEEEeC-
Q psy519           48 GHDMTVWSVEAC---S--K--GLALTGSRDTTARLWSLEQM---------------YPLRIFV---GHKQDVTCARFHP-  101 (351)
Q Consensus        48 ~~~~~i~~~~~~---~--~--~~~~~~~~d~~i~vw~~~~~---------------~~~~~~~---~~~~~i~~i~~~~-  101 (351)
                      .-..+|..|.|.   .  +  ..++..-....+.|+...-.               .++..+.   ....+...++|+| 
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            456788899988   2  1  24567777778888873211               1222332   1234677899998 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc-----eeEEeccC----------CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519          102 KITYIGTGSYDKAVRLWSITDGA-----SVRVFSDH----------VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      +...||+....|...+|++....     ........          .+.-..+.|.++.+.|+++.    ...+.++|++
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~----r~~l~~~d~~  232 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN----RSKLMLIDFE  232 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc----CCceEEEECC
Confidence            55689999999999999992111     11111111          12334788988888888876    5789999998


Q ss_pred             CCceeE-E-eccCCCCEEEEEECCC--CcEEEEEcCCCeEEEEEcCC
Q psy519          167 DGASVR-V-FSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       167 ~~~~~~-~-~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  209 (351)
                      +..... . .......|..+.-+|+  +..|+..+  ..|...++..
T Consensus       233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            875533 1 2234467888888886  33333332  4577777766

These proteins are found in fungi.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.34  E-value=12  Score=31.56  Aligned_cols=165  Identities=15%  Similarity=0.131  Sum_probs=93.3

Q ss_pred             CcEEEEeCCCCeeeEEeeC------CCCCeEEEEEeCCC-----CEEEEE-eCCCcEEEEeCCCCceeEEecc-------
Q psy519           71 TTARLWSLEQMYPLRIFVG------HKQDVTCARFHPKI-----TYIGTG-SYDKAVRLWSITDGASVRVFSD-------  131 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~------~~~~i~~i~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-------  131 (351)
                      -.|.+||+.+++.++.+.-      ....+..+.+....     .+++.+ +..+.|.++|+.+++..+.+..       
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            3688899999988777642      24567778886622     233333 3346899999998876554432       


Q ss_pred             ------------CCCCeEEEEEcc---CCCEEEEEecCCCCCeEEEEEccC-----Cc---------eeEEeccCCCCEE
Q psy519          132 ------------HVSPVLSIAFSP---CGKYLASGGTGSYDKAVRLWSITD-----GA---------SVRVFSDHVSPVL  182 (351)
Q Consensus       132 ------------~~~~i~~~~~~~---~~~~l~~~~~~~~d~~i~i~d~~~-----~~---------~~~~~~~~~~~i~  182 (351)
                                  ....+..++.+|   +++.|.....   . .-++|-+.+     ..         .+..+-.......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l---s-s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL---S-SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET---T--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeC---C-CCcEEEEEHHHhhCccccccccccccceeccccCCCCc
Confidence                        122366667765   5566665543   1 223333221     11         1122211123556


Q ss_pred             EEEECCCCcEEEEEcCCCeEEEEEcCCCc---EEEEeeccCC--CCEEEEEEcC--CCCEEEEE
Q psy519          183 SIAFSPCGKYLASGGEDGLVLTHELTTGR---VISRFHLQEH--EPVTSLVWSV--TGETLVTG  239 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~  239 (351)
                      .++++++|.++++--..+.|..|+....-   ....+.....  ..+.++.+.+  +|.+.+..
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            78899999999999999999999987521   1222221222  4678888888  66655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2063|consensus

Probab=89.33  E-value=23  Score=34.78  Aligned_cols=59  Identities=12%  Similarity=-0.007  Sum_probs=42.0

Q ss_pred             ccEEEEecCCCceEEEecCCc-------c---------CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------T---------SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~---------~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~   83 (351)
                      |..|..|+.+|.+.+|.+...       .         .-+..+|+.+...+.-.++-...|+.+.++++.+.+.
T Consensus        26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP  100 (877)
T ss_pred             CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence            789999999999999998876       0         1123455555555555555566778899988876655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.31  E-value=22  Score=34.41  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             ccceEEEEECCCCcE-EEEeCCCcEEEEeCCC----------Cee---eEEe--------eCCCCCeEEEEEeCC---CC
Q psy519           50 DMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ----------MYP---LRIF--------VGHKQDVTCARFHPK---IT  104 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~----------~~~---~~~~--------~~~~~~i~~i~~~~~---~~  104 (351)
                      .-.|..+..+++|.+ +..|. ..|.|-.+..          ++.   .+++        ..+...|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            356888999999998 44444 4455544421          111   1111        134457889999995   57


Q ss_pred             EEEEEeCCCcEEEEeCCCCc
Q psy519          105 YIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus       105 ~l~~~~~dg~i~i~d~~~~~  124 (351)
                      .|++-..|+.+++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.24  E-value=12  Score=31.39  Aligned_cols=96  Identities=9%  Similarity=0.211  Sum_probs=60.4

Q ss_pred             CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC---CCCCeEEEEEccCCceeEEecc-----CCCCEEEE
Q psy519          113 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG---SYDKAVRLWSITDGASVRVFSD-----HVSPVLSI  184 (351)
Q Consensus       113 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~~  184 (351)
                      ..|++||..+.+....-.+-.+.|+++.|..+.+.++.|.-.   .....+..||+.+.. ...+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            469999998877666656677899999998666666666421   125678999987653 333333     23678888


Q ss_pred             EECC-CC-cEEEEEc-CC--CeEEEEEcCC
Q psy519          185 AFSP-CG-KYLASGG-ED--GLVLTHELTT  209 (351)
Q Consensus       185 ~~~~-~~-~~l~~~~-~d--g~i~i~d~~~  209 (351)
                      .+.. |+ ++.+.|. .+  ..|..||=..
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            7743 33 3444443 23  3466666433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.78  E-value=14  Score=31.68  Aligned_cols=108  Identities=9%  Similarity=0.029  Sum_probs=51.2

Q ss_pred             CCcE-EEEeCC-----CcEEEEeCCCCeee---EEeeCCCCCe--EEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCc
Q psy519           61 KGLA-LTGSRD-----TTARLWSLEQMYPL---RIFVGHKQDV--TCARFHPKITYIGTGSY-----DKAVRLWSITDGA  124 (351)
Q Consensus        61 ~~~~-~~~~~d-----~~i~vw~~~~~~~~---~~~~~~~~~i--~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  124 (351)
                      ++.+ +.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++.. ++++.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            3444 777754     34666777655421   1111111111  122222 4566666664     2468889988765


Q ss_pred             eeEEec-cCCCCeEEEEEccCCCEEEEEecCCC-CCeEEEEEccCCc
Q psy519          125 SVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSY-DKAVRLWSITDGA  169 (351)
Q Consensus       125 ~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~-d~~i~i~d~~~~~  169 (351)
                      ....-. .........+...++++.+.|+.... -..+..||.++.+
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            433211 11111122222335677777765100 1235688887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.72  E-value=11  Score=30.04  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=57.0

Q ss_pred             CCeEEEEEccC--CceeEEeccCCCCEEEEEECCCCcEEEEEcCC---C---eEEEE-EcCC----Cc------------
Q psy519          157 DKAVRLWSITD--GASVRVFSDHVSPVLSIAFSPCGKYLASGGED---G---LVLTH-ELTT----GR------------  211 (351)
Q Consensus       157 d~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~----~~------------  211 (351)
                      ...|.+|++..  .+.+..+.. -+.|..+.++..|+++++--++   .   .+++| +.+.    .+            
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~  115 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVT  115 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccc
Confidence            67899999983  345556644 3789999999999999986432   2   45655 1111    11            


Q ss_pred             ---------EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          212 ---------VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       212 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                               .+..++.+-..++.+++-.|-..-|++|+ ++.+.+|.+...
T Consensus       116 ~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  116 PSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             cCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence                     12222333344566777777433344544 457888876543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.33  E-value=3.5  Score=38.50  Aligned_cols=73  Identities=18%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccC----CceeEEe--c--------------------cCCCCEEEEEECC----CCcE
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITD----GASVRVF--S--------------------DHVSPVLSIAFSP----CGKY  192 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~----~~~~~~~--~--------------------~~~~~i~~~~~~~----~~~~  192 (351)
                      ++...++.+..   ||.+.......    +......  .                    ........+++++    +..+
T Consensus       156 ~~~~~l~v~~~---dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (547)
T PF11715_consen  156 DSEANLVVSLQ---DGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF  232 (547)
T ss_dssp             -SSSBEEEEES---SS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred             cCCCEEEEEEC---CCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence            36667777777   99988888764    2111111  0                    0123455666666    6789


Q ss_pred             EEEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          193 LASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      +++.+.|+.+++||+.+++++.....
T Consensus       233 l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  233 LFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999999776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02153 epithiospecifier protein

Probab=87.94  E-value=17  Score=31.52  Aligned_cols=142  Identities=13%  Similarity=0.068  Sum_probs=67.1

Q ss_pred             ccEEEEecCC-------CceEEEecCCc----cC--C--Cccc--eEEEEECCCCcE-EEEeCC-----CcEEEEeCCCC
Q psy519           25 EDVLANLESQ-------KNLQSRYLPYY----TS--G--HDMT--VWSVEACSKGLA-LTGSRD-----TTARLWSLEQM   81 (351)
Q Consensus        25 ~~~l~~~~~~-------~~i~i~~~~~~----~~--~--~~~~--i~~~~~~~~~~~-~~~~~d-----~~i~vw~~~~~   81 (351)
                      +.+++.|+.+       ..+.+||....    ..  +  ....  -.+++.. ++++ +.|+.+     ..+.+||+.+.
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCCCCCccCcEEEEECCCC
Confidence            5677777653       25777887665    11  1  0000  0112222 3444 777753     35788898765


Q ss_pred             eeeE--EeeC---CCCC-eEEEEEeCCCCEEEEEeCC-----------CcEEEEeCCCCceeEEecc----CCCCeEEEE
Q psy519           82 YPLR--IFVG---HKQD-VTCARFHPKITYIGTGSYD-----------KAVRLWSITDGASVRVFSD----HVSPVLSIA  140 (351)
Q Consensus        82 ~~~~--~~~~---~~~~-i~~i~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~----~~~~i~~~~  140 (351)
                      +-..  .+..   .... -.+++. -+++.++.|+.+           ..+.+||+.+.+-...-..    ....-.+++
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~  190 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA  190 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence            4322  1110   1111 112222 345666777653           2477889887654322110    011111222


Q ss_pred             EccCCCEEEEEecCC----------CCCeEEEEEccCCc
Q psy519          141 FSPCGKYLASGGTGS----------YDKAVRLWSITDGA  169 (351)
Q Consensus       141 ~~~~~~~l~~~~~~~----------~d~~i~i~d~~~~~  169 (351)
                      . -++++++.++...          ....+.+||+.+.+
T Consensus       191 ~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        191 V-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             E-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence            2 2566666554310          02468889987653

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.86  E-value=25  Score=33.31  Aligned_cols=236  Identities=11%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCC---CcE-EEEeCCCc-EEEEeCCCC-
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSK---GLA-LTGSRDTT-ARLWSLEQM-   81 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~---~~~-~~~~~d~~-i~vw~~~~~-   81 (351)
                      .+..++|+  ...+-.|=+...|.-|-+...       .-.....|.|+.....   .++ +.|-.++. -++..++.+ 
T Consensus        31 vs~~~s~~--sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~  108 (670)
T PF10395_consen   31 VSDDFSPD--SNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV  108 (670)
T ss_pred             eecccCCC--CceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence            34477788  776666644445544443332       2234556666654322   123 55534333 343333222 


Q ss_pred             ----------e--eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE--Eecc-CCC------CeEEEE
Q psy519           82 ----------Y--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR--VFSD-HVS------PVLSIA  140 (351)
Q Consensus        82 ----------~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-~~~------~i~~~~  140 (351)
                                +  ....+. -...+.++.+.++++.+++...+|.|.+||...+....  .+.. +..      -|....
T Consensus       109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~  187 (670)
T PF10395_consen  109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE  187 (670)
T ss_pred             ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Confidence                      1  111222 35678899999999999999999999999993322111  2211 111      111111


Q ss_pred             EccCCCEEEEEec-CCCCCeEEEEEcc-CCceeEEec---cCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEE
Q psy519          141 FSPCGKYLASGGT-GSYDKAVRLWSIT-DGASVRVFS---DHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVIS  214 (351)
Q Consensus       141 ~~~~~~~l~~~~~-~~~d~~i~i~d~~-~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  214 (351)
                      ......++++.+. ....-..+++.+. ....+..+.   .+........|+- +|.+.--  .++.|.+|++.+-+..+
T Consensus       188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~  265 (670)
T PF10395_consen  188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQK  265 (670)
T ss_pred             cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEE
Confidence            1112344444433 2223457788871 122222222   1111222223332 4543333  57789999998888777


Q ss_pred             EeeccCC-----CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          215 RFHLQEH-----EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       215 ~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      ++....-     ..+.++.- |..++++.+ .++.|++.|+.-...+.
T Consensus       266 tI~l~~ii~~~~~~~vSl~~-~s~nRvLLs-~~nkIyLld~~~~siLs  311 (670)
T PF10395_consen  266 TISLPSIIDKESDDLVSLKP-PSPNRVLLS-VNNKIYLLDLKFESILS  311 (670)
T ss_pred             EEEechhhccccccceEeec-CCCCeEEEE-cCCEEEEEeehhhhhhh
Confidence            7765421     12333332 233344333 45799999987555443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PLN02153 epithiospecifier protein

Probab=87.84  E-value=17  Score=31.48  Aligned_cols=149  Identities=13%  Similarity=0.039  Sum_probs=70.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceeEE--ec----cCCCCeEEEEEccCCCEEEEEecCCC--------CCeEEE
Q psy519          102 KITYIGTGSYD-----KAVRLWSITDGASVRV--FS----DHVSPVLSIAFSPCGKYLASGGTGSY--------DKAVRL  162 (351)
Q Consensus       102 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~----~~~~~i~~~~~~~~~~~l~~~~~~~~--------d~~i~i  162 (351)
                      ++++++.|+.+     ..+.+||+.+.+....  +.    .....-.+++. -++++++.|+....        -..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            45677777753     3578899887654322  11    01111122222 25666677664110        125778


Q ss_pred             EEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcCC-------------CeEEEEEcCCCcEEEEeec---cCC
Q psy519          163 WSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGED-------------GLVLTHELTTGRVISRFHL---QEH  221 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~---~~~  221 (351)
                      ||..+.+ -..+....     ..-..++. -++++++.++.+             ..+.+||+.+.+-...-..   +..
T Consensus       164 yd~~~~~-W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~  241 (341)
T PLN02153        164 YNIADGK-WVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA  241 (341)
T ss_pred             EECCCCe-EeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence            8887642 11221111     00112222 256666655421             3588899877654332110   111


Q ss_pred             CCEEEEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCc
Q psy519          222 EPVTSLVWSVTGETLVTGSLT--------------GTVQFYGWPSAS  254 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~  254 (351)
                      ....+++ ..++++++.|+..              +.+..||..+.+
T Consensus       242 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        242 RSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             cceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            1112222 2246677777641              257777776654

>KOG4460|consensus

Probab=87.80  E-value=12  Score=33.98  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeC---------CCCceeEE---e--------ccCCCCeEEEEEccCC---CEEE
Q psy519           93 DVTCARFHPKITYIGTGSYDKAVRLWSI---------TDGASVRV---F--------SDHVSPVLSIAFSPCG---KYLA  149 (351)
Q Consensus        93 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~---~--------~~~~~~i~~~~~~~~~---~~l~  149 (351)
                      .|..+..++.|..++..+.+|.+.++=.         +.++..-.   +        +...-.+..++|+|+.   ..+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4666778899999999888987665542         22322111   1        1112345678999965   4555


Q ss_pred             EEecCCCCCeEEEEEccCCcee
Q psy519          150 SGGTGSYDKAVRLWSITDGASV  171 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~  171 (351)
                      .-..   |..|++||+...+.+
T Consensus       185 iL~s---dnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTS---DNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEec---CcEEEEEecCCcchh
Confidence            5556   999999999765544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.23  E-value=21  Score=31.77  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc--
Q psy519           94 VTCARFHPKITYIGTGSYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA--  169 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~--  169 (351)
                      ...+..++++.+++.+.....++-||-  +..  ...-......+..+.+.+++..++++.    .|.+.. ....++  
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~----~G~l~~-S~d~G~~~  313 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTR----GGGLYV-SKGTGLTE  313 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeC----CceEEE-ecCCCCcc
Confidence            344556778777776654332333442  222  222233456788999999999888764    555443 333443  


Q ss_pred             ---eeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          170 ---SVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       170 ---~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                         .......  ....+..+.|.+++..+++| ..|.+..- ...++.-.....  ........+.|.++++.+++| .+
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence               2222221  22358889999887766666 56755544 344444333221  123568899998777766665 67


Q ss_pred             CeEEEE
Q psy519          243 GTVQFY  248 (351)
Q Consensus       243 g~i~i~  248 (351)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            776544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.71  E-value=3.5  Score=22.31  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             eccCCCCEEEEEECCCCcEEEEEcC-C--CeEEEE
Q psy519          174 FSDHVSPVLSIAFSPCGKYLASGGE-D--GLVLTH  205 (351)
Q Consensus       174 ~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~  205 (351)
                      +......-....|+|||+.|+-.+. +  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3344556778999999988776553 4  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.63  E-value=9.4  Score=36.44  Aligned_cols=87  Identities=14%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             EEeeecCCccccEEEEecCCC-----ceEEEecCCc-------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe
Q psy519           15 IQNSFKPETVEDVLANLESQK-----NLQSRYLPYY-------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~-----~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~   82 (351)
                      ..+.|-|.  |..+++-..||     .|..+..+..       ..+....+...+|+-..........+.+++|-..+..
T Consensus       250 ~~LSWkpq--gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQ--GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccC--CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence            45899999  99999876444     3555554433       2233445566677655555444566789999877654


Q ss_pred             eeEEeeCCCCCeEEEEEeCCC
Q psy519           83 PLRIFVGHKQDVTCARFHPKI  103 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~  103 (351)
                      -.-...-.-..+.-+.|+|..
T Consensus       328 WYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEEEeecCCCcceeeecccc
Confidence            332222233456678888843

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.43  E-value=3.7  Score=22.24  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~  163 (351)
                      .....-....|+|||+.|+.++.....|.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345567889999999998877652111555454

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.99  E-value=11  Score=27.39  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccCC--------ceeEEeccCCCCEEEEEECC-----CCcEEEEEcCCCeEEEE
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITDG--------ASVRVFSDHVSPVLSIAFSP-----CGKYLASGGEDGLVLTH  205 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~  205 (351)
                      -.|.....-|++++.   -+.|.|++....        ..+..+ .....|++++-.+     +...|+.|+. ..+..|
T Consensus         4 GkfDG~~pcL~~aT~---~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaY   78 (136)
T PF14781_consen    4 GKFDGVHPCLACATT---GGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY   78 (136)
T ss_pred             EEeCCCceeEEEEec---CCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence            345555566777777   788888886533        223333 3456677775443     3457777775 568899


Q ss_pred             EcCCCcEEEEeeccCCCCEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCc
Q psy519          206 ELTTGRVISRFHLQEHEPVTSLVWSV----TGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       206 d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |+.+...+...+  -...++++.+-.    ...++++| .+-.|.=||.+..+
T Consensus        79 DV~~N~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   79 DVENNSDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE  128 (136)
T ss_pred             EcccCchhhhhh--CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence            998877665433  345677777643    23445554 45577777765443

>PLN02193 nitrile-specifier protein

Probab=85.60  E-value=29  Score=31.79  Aligned_cols=223  Identities=10%  Similarity=-0.088  Sum_probs=0.0

Q ss_pred             cccEEEEecCC-------CceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCC-----CcEEEEeCCCC
Q psy519           24 VEDVLANLESQ-------KNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRD-----TTARLWSLEQM   81 (351)
Q Consensus        24 ~~~~l~~~~~~-------~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d-----~~i~vw~~~~~   81 (351)
                      .+.+++.|+.+       ..+..||+...         ..............-++.+ +.|+.+     ..+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC


Q ss_pred             eeeEEeeC---CCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceeEEec---cCCCCeEEEEEccCCCEEEE
Q psy519           82 YPLRIFVG---HKQDVTCARFHPKITYIGTGSYDKA-----VRLWSITDGASVRVFS---DHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        82 ~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~  150 (351)
                      +-...-..   ....-...+..-++++++.|+.++.     +..||+.+.+....-.   .....-...+..-+++.++.
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi  334 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV  334 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE


Q ss_pred             EecCCCC----CeEEEEEccCCceeEEecc---CCCCEEEEEECCCCcEEEEEcCCC--------------eEEEEEcCC
Q psy519          151 GGTGSYD----KAVRLWSITDGASVRVFSD---HVSPVLSIAFSPCGKYLASGGEDG--------------LVLTHELTT  209 (351)
Q Consensus       151 ~~~~~~d----~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~  209 (351)
                      ++.   +    ..+.+||+.+.+=...-..   ........+..-++++++.|+...              .+.+||+.+
T Consensus       335 GG~---~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t  411 (470)
T PLN02193        335 YGF---NGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET  411 (470)
T ss_pred             ECC---CCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc


Q ss_pred             CcEEEEeecc---------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          210 GRVISRFHLQ---------EHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       210 ~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      .+-...-...         ............+..+++.|+.++.=..+|
T Consensus       412 ~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~  460 (470)
T PLN02193        412 LQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFD  460 (470)
T ss_pred             CEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcccccc

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.76  E-value=23  Score=29.93  Aligned_cols=144  Identities=13%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             CccceEEEEECCCC-----cE--EEEeCCCcEEEEeCCCCeeeEEeeCC-------------------CCCeEEEEEeC-
Q psy519           49 HDMTVWSVEACSKG-----LA--LTGSRDTTARLWSLEQMYPLRIFVGH-------------------KQDVTCARFHP-  101 (351)
Q Consensus        49 ~~~~i~~~~~~~~~-----~~--~~~~~d~~i~vw~~~~~~~~~~~~~~-------------------~~~i~~i~~~~-  101 (351)
                      .......+.+....     .+  ++=...+-|.|+|+.+++.-+.+..+                   ...+.+++.+| 
T Consensus        59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~  138 (287)
T PF03022_consen   59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI  138 (287)
T ss_dssp             TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred             cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence            45667777776521     23  66666679999999988765544321                   12255555554 


Q ss_pred             --CCCEEEEEeCCCcEEEEeCCC-----Cc---------eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEc
Q psy519          102 --KITYIGTGSYDKAVRLWSITD-----GA---------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus       102 --~~~~l~~~~~dg~i~i~d~~~-----~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                        +++.|+.....+ -++|.+.+     ..         .++.+-........++++++|.++++--.   .+.|..|+.
T Consensus       139 ~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~---~~aI~~w~~  214 (287)
T PF03022_consen  139 SPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE---QNAIGCWDP  214 (287)
T ss_dssp             STTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC---CTEEEEEET
T ss_pred             CCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC---CCeEEEEeC
Confidence              455555544332 12333221     10         11222112245667899999988888777   899999998


Q ss_pred             cCCc---eeEEe-ccC--CCCEEEEEECC--CCcEEEEE
Q psy519          166 TDGA---SVRVF-SDH--VSPVLSIAFSP--CGKYLASG  196 (351)
Q Consensus       166 ~~~~---~~~~~-~~~--~~~i~~~~~~~--~~~~l~~~  196 (351)
                      .+.-   ....+ +..  -..+..+.+.+  +|.+.+..
T Consensus       215 ~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  215 DGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            7621   11222 111  24677888887  66555544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=84.13  E-value=29  Score=30.62  Aligned_cols=39  Identities=8%  Similarity=-0.032  Sum_probs=19.4

Q ss_pred             cEEEEeCCCCceeEEeccC--CCCeEEEEEccCCCEEEEEec
Q psy519          114 AVRLWSITDGASVRVFSDH--VSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      .+.+||..+.+....-...  ...-.+++.. ++++.+.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence            5888998876644321111  1111233332 5666666653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.19  E-value=49  Score=32.53  Aligned_cols=116  Identities=12%  Similarity=0.120  Sum_probs=75.6

Q ss_pred             CCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCC-----ceeEEeccCC----------CCEEEEEECCCCcEEEE
Q psy519          132 HVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDG-----ASVRVFSDHV----------SPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       132 ~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~----------~~i~~~~~~~~~~~l~~  195 (351)
                      ...+...++|+| +...||+...   .|...+||+...     ..........          ..-..+.|.++.+.|++
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~---~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv  220 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDE---KGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV  220 (765)
T ss_pred             CCCccceEEeccCccceEEEEec---cCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE
Confidence            345778899999 5568899888   999999999211     1111111111          22347889888888888


Q ss_pred             EcCCCeEEEEEcCCCcEEE-EeeccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC
Q psy519          196 GGEDGLVLTHELTTGRVIS-RFHLQEHEPVTSLVWSVT--GETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      ++. ..+.++|+.+..... .........|..+.-+|.  +..++..+  ..|...++...
T Consensus       221 ~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~  278 (765)
T PF10214_consen  221 CNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS  278 (765)
T ss_pred             EcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence            875 468899998776543 222233367888888886  33333332  57888887763

These proteins are found in fungi.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.10  E-value=49  Score=32.45  Aligned_cols=68  Identities=19%  Similarity=0.131  Sum_probs=48.2

Q ss_pred             CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEe----e--------------ccCCCCEEEEEEcCCCCEEEEEe
Q psy519          179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF----H--------------LQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~--------------~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ..|.+++...-+.+++..-.||.|.++|..+.+.+...    .              ++...++..++|||.+..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45777777777888999999999999998876544333    1              11111334577888888888888


Q ss_pred             CCCeEE
Q psy519          241 LTGTVQ  246 (351)
Q Consensus       241 ~dg~i~  246 (351)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-18
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-18
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-18
2h9l_A	329	Wdr5delta23 Length = 329		1e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-18
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-18
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-18
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-18
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-17
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-16
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-13
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-12
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-12
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-12
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-11
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-11
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-10
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-08
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		6e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-07
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		7e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 84  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 197
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 62  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 175
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 86  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 199
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 68  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 58  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 171
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 63  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 176
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 79  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 192
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
           E       +SVT G+ +V+GS
Sbjct: 253 EKYCIFANFSVTGGKWIVSGS 273

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 68  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 65  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
           E       +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 65  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 62  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 175
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 68  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 67  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 180
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 65  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
           E       +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 13/209 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 61  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 174
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFY 248
           E       +SVT G+ +V+GS    V  +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIW 263

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 65  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
           E       +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47  SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
           SGH + +    WS ++    L ++ S D T ++W +     L+   GH   V C  F+P+
Sbjct: 65  SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
              I +GS+D++VR+W +  G  ++    H  PV ++ F+  G  + S    SYD   R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           W    G  ++   D  +P +S + FSP GKY+ +   D  +   + + G+ +  +   ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
           E       +SVT G+ +V+GS    V  + 
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 21/209 (10%)
Query: 47  SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           +GH  +VW V     G  + + S D T +LW+      L+   GH   V    F P    
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT 235
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           I + S DK V+LW+  +G  ++  + H S V  +AF P G+ +AS    S DK V+LW+ 
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS---ASDDKTVKLWN- 290
Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF--HLQEHEP 223
            +G  ++  + H S V  +AFSP G+ +AS  +D  V        ++ +R   HLQ    
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV--------KLWNRNGQHLQTLTG 342
Query: 224 VTSLVWSVT----GETLVTGSLTGTVQFY 248
            +S VW V     G+T+ + S   TV+ +
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLW 371

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 30  NLESQKNLQSRYLPYYTSGHDMTVWSV-----EACSKGLALTGSRDTTARLWSL--EQMY 82
           NL  Q   Q   L      HD  +WSV     +  +    +TGS D   ++W    E++ 
Sbjct: 12  NLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD 71
Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
                 GH+  V        +    + S D  +RLW + +G  ++          ++AFS
Sbjct: 72  LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
           P  +YLA   TG++   V ++ +  G            +LSIA+SP GKYLASG  DG++
Sbjct: 132 PDSQYLA---TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 203 LTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
              ++ TG+++    L+ H  P+ SL +S   + LVT S  G ++ Y
Sbjct: 189 NIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 19/219 (8%)
Query: 48  GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GHD  V SV     G  + + SRD T ++W ++  Y ++ F GH++ V   R +   T I
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY----LASGG---------- 152
            + S D+ VR+W +          +H   V  I+++P   Y     A+G           
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 153 ---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT 209
              +GS DK +++W ++ G  +     H + V  + F   GK++ S  +D  +   +   
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
            R +   +  EH  VTSL +  T   +VTGS+  TV+ +
Sbjct: 370 KRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
Query: 47  SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           +GH   V  V   S G  AL+GS D   RLW L      R FVGH +DV    F      
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGTGSYDKAVR 161
           I + S D+ ++LW+ T G      S+    H   V  + FSP      +  + S+DK V+
Sbjct: 487 IVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVK 544
Query: 162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
           +W++++       + H   V ++A SP G   ASGG+DG+VL  +L  G+ +  + L+ +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--YSLEAN 602
Query: 222 EPVTSLVWS 230
             + +L +S
Sbjct: 603 SVIHALCFS 611

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 19/226 (8%)
Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSL--EQMYPLRIFVGHKQ 92
           NLQ+    Y   GH   V SV        + +G RD   R+W++  E M+ L     H  
Sbjct: 95  NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA-HTD 153
Query: 93  DVTCARFHPKIT--YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 150
            V+C RF P +    I +G +D  V++W +  G  V     H + V S+  SP G   AS
Sbjct: 154 WVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG 210
                 D   RLW +T G ++   +   +P+  I FSP   ++ +  E G+ +  +L   
Sbjct: 214 S---DKDGVARLWDLTKGEALSEMAAG-APINQICFSPNRYWMCAATEKGIRI-FDLENK 268
Query: 211 RVISRFHLQEHE-------PVTSLVWSVTGETLVTGSLTGTVQFYG 249
            +I      EH+          S+ WS  G TL +G     ++ +G
Sbjct: 269 DIIVEL-APEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWG 313

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 13/201 (6%)
Query: 48  GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG 107
           GH   VWS +     + ++GS D T ++W+ E    +    GH   V C   H K   + 
Sbjct: 157 GHTGGVWSSQM-RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVV 213
Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
           +GS D  +R+W I  G  + V   HV+ V  + +   G+ + S   G+YD  V++W    
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVS---GAYDFMVKVWDPET 268
Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL 227
              +     H + V S+ F   G ++ SG  D  +   ++ TG  I    L  H+ +TS 
Sbjct: 269 ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSG 324
Query: 228 VWSVTGETLVTGSLTGTVQFY 248
           +  +    LV+G+   TV+ +
Sbjct: 325 M-ELKDNILVSGNADSTVKIW 344

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   V  V   S G  AL+GS D T RLW L      R FVGH +DV    F      I
Sbjct: 84  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 107 GTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP--CGKYLASGGTGSYDKAVRL 162
            +GS DK ++LW+ T G       D  H   V  + FSP      + S G   +DK V++
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKV 199
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR 211
           W++ +         H   + ++  SP G   ASGG+DG  +  +L  G+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           GH   V  V   S G  AL+GS D T RLW L      R FVGH +DV    F      I
Sbjct: 61  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 107 GTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP--CGKYLASGGTGSYDKAVRL 162
            +GS DK ++LW+ T G       D  H   V  + FSP      + S G   +DK V++
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKV 176
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR 211
           W++ +         H   + ++  SP G   ASGG+DG  +  +L  G+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 99  FHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
           F P   ++ TG+ D+ +R+W I +   V +   H   + S+ + P G  L SG   S D+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDR 187
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFH 217
            VR+W +  G      S     V ++A SP  GKY+A+G  D  V   +  TG ++ R  
Sbjct: 188 TVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 218 LQEH------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK 255
            +        + V S+V++  G+++V+GSL  +V+ +   +A+ 
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
           GH   V SV+   K  + ++GSRD T ++W+++    L   +GH   V+  R  P     
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
              +T I  G+ DK V+ W++        F  H S + ++  SP G  +AS G    D  
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
           + LW++    ++   S     V S+AFSP   +LA+    G+    L  +     +   F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
             + +  EP   SL WS  G+TL  G     ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
           GH   V SV+   K  + ++GSRD T ++W+++    L   +GH   V+  R  P     
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
              +T I  G+ DK V+ W++        F  H S + ++  SP G  +AS G    D  
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
           + LW++    ++   S     V S+AFSP   +LA+    G+    L  +     +   F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
             + +  EP   SL WS  G+TL  G     ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
           GH   V SV+   K  + ++GSRD T ++W+++    L   +GH   V+  R  P     
Sbjct: 99  GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 157
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
              +T I  G+ DK V+ W++        F  H S + ++  SP G  +AS G    D  
Sbjct: 158 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 213
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
           + LW++    ++   S     V S+AFSP   +LA+    G+    L  +     +   F
Sbjct: 214 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
             + +  EP   SL WS  G+TL  G     ++ +
Sbjct: 273 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
           GH   V SV+   K  + ++GSRD T ++W+++    L   +GH   V+  R  P     
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
              +T I  G+ DK V+ W++        F  H S + ++  SP G  +AS G    D  
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
           + LW++    ++   S     V S+AFSP   +LA+    G+    L  +     +   F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
             + +  EP   SL WS  G+TL  G     ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64  ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
           AL+ S D T RLW +      + FVGHK DV       K + I +GS DK +++W+I   
Sbjct: 80  ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
             A++   +D VS V  +          +  +   DK V+ W++        F  H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
            ++  SP G  +AS G+DG ++   L   + +  + L   + V SL +S     L   + 
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
           TG   F
Sbjct: 258 TGIKVF 263

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 35/231 (15%)
Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF--HPKIT 104
           SGHD  VW+++    G+ ++GS D T R+W +++     +F GH   V C     +  I 
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 105 YIGTGSYDKAVRLWSITDGAS-----------------------VRVFSDHVSPVLSIAF 141
           YI TGS D  + +W +   +S                       V V   H++ V ++  
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-- 276
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
           S  G  + S   GSYD  + +W +     + + S H   + S  +    K   S   D  
Sbjct: 277 SGHGNIVVS---GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS 252
           +   +L  G ++  + LQ H  +  L+  ++ + LV+ +  G+++  GW +
Sbjct: 334 IRIWDLENGELM--YTLQGHTALVGLL-RLSDKFLVSAAADGSIR--GWDA 379

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 65  LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT--YIGTGSYDKAVRLWSITD 122
           LT S D T  LW +E    L+ F GH  DV C    P  T     +G  DK   +W +  
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH--VSP 180
           G  V+ F  H S V S+ + P G   AS   GS D   RL+ +     V ++S    +  
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFAS---GSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS 240
             S+ FS  G+ L +G  D  +   ++  G  +S     E+  V++L  S  G    +GS
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-VSTLRVSPDGTAFCSGS 345
Query: 241 LTGTVQFY 248
              T++ +
Sbjct: 346 WDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 8/202 (3%)
Query: 90  HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC--GKY 147
           H   ++   F      I T S D    LW +  G  ++ F  H + VL +  +P   G  
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
             SGG    DK   +W +  G  V+ F  H S V S+ + P G   ASG +D     ++L
Sbjct: 213 FVSGGC---DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 208 TTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--GVYPRC 264
              R ++ +  +      +S+ +S++G  L  G    T+  +     S++ I  G   R 
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329
Query: 265 AAQPVGFEAATLAANSRVRTLR 286
           +   V  +     + S   TLR
Sbjct: 330 STLRVSPDGTAFCSGSWDHTLR 351

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
           GH   V SV+   K    ++GSRD T ++W+++    L   +GH   V+  R  P     
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
              +T I  G+ DK V+ W++        F  H S + ++  SP G  +AS G    D  
Sbjct: 164 DDSVTIISAGN-DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
           + LW++    +    S     V S+AFSP   +LA+    G+    L  +     +   F
Sbjct: 220 IXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
             + +  EP   SL WS  G+TL  G     ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF--HPKIT 104
           SGHD  VW+++    G+ ++GS D T R+W +++     +F GH   V C     +  I 
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 105 YIGTGSYDKAVRLWSITDGAS-----------------------VRVFSDHVSPVLSIAF 141
           YI TGS D  + +W +   +S                       V V   H + V ++  
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV-- 276
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
           S  G  + S   GSYD  + +W +     + + S H   + S  +    K   S   D  
Sbjct: 277 SGHGNIVVS---GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS 252
           +   +L  G +   + LQ H  +  L+  ++ + LV+ +  G+++  GW +
Sbjct: 334 IRIWDLENGEL--XYTLQGHTALVGLL-RLSDKFLVSAAADGSIR--GWDA 379

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 20/209 (9%)
Query: 65  LTGSRDTTARLWSLEQMYPLRIF-----VGHKQDVTCARFHP-KITYIGTGSYDKAVRLW 118
           +TGS D T  LW +     + IF      GH  DV     +        +GS D  VRLW
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 119 SI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF--- 174
            +     +VR +  H   + S+ F P G+     GTGS D   RL+ +  G  ++V+   
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRF---GTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 175 ---SDHVSPVL-SIAFSPCGKYLASGGEDGLVLTHE-LTTGRVISRFHLQE-HE-PVTSL 227
              +D+  P++ S+AFS  G+ L +G  +G     + L    V++   LQ  HE  ++ L
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 228 VWSVTGETLVTGSLTGTVQFYGWPSASKI 256
             S  G  L TGS    ++ + +    KI
Sbjct: 351 GLSSDGSALCTGSWDKNLKIWAFSGHRKI 379

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 70  DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
           D    +W L     +R F GH    +C       T + TG  D  VR W + +G  ++  
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
            D  S + S+ + P G++LA G   S  + + + +  D   + +   H S VLS+ F+ C
Sbjct: 222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHL---HESCVLSLKFAYC 276
Query: 190 GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS 240
           GK+  S G+D L+       G  I  F  +E   V S   SV  + +VTGS
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGS 325

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 55  SVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKA 114
           S E C    A++ S D T RLW L      + FVGH+ +V    F P    I +   ++ 
Sbjct: 85  SQENC---FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 115 VRLWSIT-----DGASVRVFSDHV-----SPVLSIA--FSPCGKYLASGGTGSYDKAVRL 162
           ++LW+I        A     SD V     SP++  A    P   Y AS G   +D  +++
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKV 198
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
           W+ T+      F  H S V  ++ SP GKY+A+GG+D  +L  ++
Sbjct: 199 WN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 70  DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
           D T +++  E    L     H+ +V C  F    +YI T S DK V++W    G  V  +
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
            +H   V    F+    +L    TGS D  ++LW +           H + V    FSP 
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 761
Query: 190 GKYLASGGEDGLVLTHELTTGRV-----ISRFHLQEHEP-------VTSLVWSVTGETLV 237
            + LAS   DG +   ++ +        + RF L   +P       V    WS  G+ ++
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 821
Query: 238 TGSLTGTVQF 247
             +    + F
Sbjct: 822 VAAKNKVLLF 831

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 70  DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
           D T +++  E    L     H+ +V C  F    +YI T S DK V++W    G  V  +
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
            +H   V    F+    +L    TGS D  ++LW +           H + V    FSP 
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754
Query: 190 GKYLASGGEDGLVLTHELTTGRV-----ISRFHLQEHEP-------VTSLVWSVTGETLV 237
            + LAS   DG +   ++ +        + RF L   +P       V    WS  G+ ++
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814
Query: 238 TGSLTGTVQF 247
             +    + F
Sbjct: 815 VAAKNKVLLF 824

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28  LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
           L N+ S  NL++R     +    +GH   +           +T S DTT  LW +E    
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
              F GH  DV      P      +G+ D + +LW + +G   + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
            G   A   TGS D   RL+ +     +  +S  + +  + S++FS  G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28  LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
           L N+ S  NL++R     +    +GH   +           +T S DTT  LW +E    
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 187
Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
              F GH  DV      P      +G+ D + +LW + +G   + F+ H S + +I F P
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 247
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
            G   A   TGS D   RL+ +     +  +S  + +  + S++FS  G+ L +G +D
Sbjct: 248 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28  LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
           L N+ S  NL++R     +    +GH   +           +T S DTT  LW +E    
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
              F GH  DV      P      +G+ D + +LW + +G   + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
            G   A   TGS D   RL+ +     +  +S  + +  + S++FS  G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28  LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
           L N+ S  NL++R     +    +GH   +           +T S DTT  LW +E    
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
              F GH  DV      P      +G+ D + +LW + +G   + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
            G   A   TGS D   RL+ +     +  +S  + +  + S++FS  G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28  LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
           L N+ S  NL++R     +    +GH   +           +T S DTT  LW +E    
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
              F GH  DV      P      +G+ D + +LW + +G   + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
            G   A   TGS D   RL+ +     +  +S  + +  + S++FS  G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 60  SKGLALTGSRDTTARLWSLEQMYPL---RIFVGHKQDVTCARFHPKITYIGTGSYDKAVR 116
           + G+ +T S+D +  +W +     +   R+ VGH+  V    F  K  YI + S D+ ++
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIK 279
Query: 117 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
           +W+ +    VR  + H   +  + +    + + SG   S D  +RLW I  GA +RV   
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG---SSDNTIRLWDIECGACLRVLEG 334
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG 210
           H   V  I F    K + SG  DG +   +L   
Sbjct: 335 HEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAA 366

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60  SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
           +K   L+GS D T +LW+ E  + L + F GH+  V C  F+PK  +   +G  D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
           WS+  G S   F+        + +      P   Y+    T S D  +++W     + V 
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
               H+S V    F P    + SG EDG +     +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60  SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
           +K   L+GS D T +LW+ E  + L + F GH+  V C  F+PK  +   +G  D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
           WS+  G S   F+        + +      P   Y+    T S D  +++W     + V 
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
               H+S V    F P    + SG EDG +     +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60  SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
           +K   L+GS D T +LW+ E  + L + F GH+  V C  F+PK  +   +G  D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
           WS+  G S   F+        + +      P   Y+    T S D  +++W     + V 
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
               H+S V    F P    + SG EDG +     +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60  SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
           +K   L+GS D T +LW+ E  + L + F GH+  V C  F+PK  +   +G  D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
           WS+  G S   F+        + +      P   Y+    T S D  +++W     + V 
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
               H+S V    F P    + SG EDG +     +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47  SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
           SGH   V  +     G  L +G  D    +W          PL+ F  H+  V    + P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
               +   G G+ D+ +R+W++  GA +     H S V SI +SP  K L SG   + ++
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 345
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
            V +W     A V     H S VLS+  SP G  +AS   D
Sbjct: 346 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47  SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
           SGH   V  +     G  L +G  D    +W          PL+ F  H+  V    + P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
               +   G G+ D+ +R+W++  GA +     H S V SI +SP  K L SG   + ++
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 356
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
            V +W     A V     H S VLS+  SP G  +AS   D
Sbjct: 357 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 99  FHPKITYIGTGSYDKAVRLWSITDGAS---VRVFSD-HVSPVLSIAFSPCGKYLASGGTG 154
           ++P  T + +   D+ +R+W  T+G S     V S+ H   V  +A+SPCG YLAS    
Sbjct: 24  WNPAGTLLASCGGDRRIRIWG-TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS---A 79
Query: 155 SYDKAVRLWSIT--DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
           S+D    +W     D   V     H + V S+A++P G  LA+   D  V   E+     
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 213 ISRFH-LQEH-EPVTSLVWSVTGETLVTGSLTGTVQFY 248
                 L  H + V  +VW  + E L + S   TV+ Y
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47  SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
           SGH   V  +     G  L +G  D    +W          PL+ F  H+  V    + P
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
               +   G G+ D+ +R+W++  GA +     H S V SI +SP  K L SG   + ++
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 265
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
            V +W     A V     H S VLS+  SP G  +AS   D
Sbjct: 266 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 87  FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 146
             GH++ +T  +++ +   + + S D +  +W   +G  +     H   + SI      K
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED-----GL 201
           Y     TGS D +++LW +++G  V  +   V PV  + FSPCG Y  +  ++     G 
Sbjct: 88  YCV---TGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLV------------WSVTGETLVTGSLTGTVQFY 248
           +  +E+              EP+  ++            WS  G+ ++ G   G +  Y
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 39/279 (13%)
Query: 23  TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQM 81
           T E  +  L+S  NLQ          H   +  ++    G AL + S+D   ++WS++  
Sbjct: 113 TTEGDIKVLDSNFNLQREI----DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 82  YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP---VLS 138
              R  +GH+  VT      +   + + S D  +RLW    G ++  F+   +P   V S
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 228
Query: 139 IA-FSPCGKYLASGGT--------GSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFS- 187
           IA F    + L    T        G+Y K V    ++   +V  VFS   +  L   F+ 
Sbjct: 229 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 288
Query: 188 PC---------GKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVTGETLV 237
            C           Y+ +G E+G++   +L +    +  F + E  P+ + V+   G   V
Sbjct: 289 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFAAGALFV 347
Query: 238 TGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL 276
           +          G+ ++ K+ I   P      + FE  T 
Sbjct: 348 SS---------GFDTSIKLDIISDPESERPAIEFETPTF 377

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 39/279 (13%)
Query: 23  TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQM 81
           T E  +  L+S  NLQ          H   +  ++    G AL + S+D   ++WS++  
Sbjct: 116 TTEGDIKVLDSNFNLQREI----DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 82  YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP---VLS 138
              R  +GH+  VT      +   + + S D  +RLW    G ++  F+   +P   V S
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231
Query: 139 IA-FSPCGKYLASGGT--------GSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFS- 187
           IA F    + L    T        G+Y K V    ++   +V  VFS   +  L   F+ 
Sbjct: 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291
Query: 188 PC---------GKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVTGETLV 237
            C           Y+ +G E+G++   +L +    +  F + E  P+ + V+   G   V
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFAAGALFV 350
Query: 238 TGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL 276
           +          G+ ++ K+ I   P      + FE  T 
Sbjct: 351 SS---------GFDTSIKLDIISDPESERPAIEFETPTF 380

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 23/243 (9%)
Query: 27  VLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLW----SLEQM 81
           + A  ES        L     GH+  V  V   + G  L T SRD +  +W    S E+ 
Sbjct: 84  IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 82  YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS--ITDGASVRVFSDHVSPVLSI 139
             + +   H QDV    +HP    + + SYD  VR+W     D   V V + H   V S 
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 140 AFSPCGKYLASGGTGSYDKAVRLWSI--------TDGASVRVFSD-HVSPVLSIAFSPCG 190
            F    + +    +GS D  VR+W           +     +  D H   V ++A+   G
Sbjct: 204 DFDKT-EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262
Query: 191 KYLASGGEDGLVLTHELTTG--RVISRFHL-QEHEPVTSLVW-SVTGET-LVTGSLTGTV 245
             +AS G DG++  +E   G  +V ++  L      +  + W  + G+T L TG   G V
Sbjct: 263 -LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321
Query: 246 QFY 248
            F+
Sbjct: 322 NFW 324

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61  KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
            G  L+ S D T  LW +         +    IF GH    +DV     H  +   G+ +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 251
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
            D+ + +W   +  + +       H + V  ++F+P  +++ +  TGS DK V LW + +
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 309
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
               +  F  H   +  + +SP  +  LAS G D
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61  KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
            G  L+ S D T  LW +         +    IF GH    +DV     H  +   G+ +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 253
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
            D+ + +W   +  + +       H + V  ++F+P  +++ +  TGS DK V LW + +
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 311
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
               +  F  H   +  + +SP  +  LAS G D
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61  KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
            G  L+ S D T  LW +         +    IF GH    +DV     H  +   G+ +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 255
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
            D+ + +W   +  + +       H + V  ++F+P  +++ +  TGS DK V LW + +
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 313
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
               +  F  H   +  + +SP  +  LAS G D
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62  GLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
           G  L+ S D T  LW +         +    IF GH    +DV     H  +   G+ + 
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--FGSVAD 250
Query: 112 DKAVRLW---SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
           D+ + +W   S T      +   H + V  ++F+P  +++ +  TGS DK V LW + + 
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 308
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
              +  F  H   +  + +SP  +  LAS G D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62  GLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
           G  L+ S D T  LW +         +    IF GH    +DV     H  +   G+ + 
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--FGSVAD 250
Query: 112 DKAVRLW---SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
           D+ + +W   S T      +   H + V  ++F+P  +++ +  TGS DK V LW + + 
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 308
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
              +  F  H   +  + +SP  +  LAS G D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 89  GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL 148
           GH  +V    +      + +G  D  V++W           ++H + V ++A+ P    L
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
            + G G+ DK +  W+   GA V    D  S V S+ +SP  K + S
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMS 320

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 49  HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI-G 107
           H M+  S + C   L   G+R    +L  L+      I  GH+Q++    + P+  YI  
Sbjct: 147 HHMSPVSTKHC---LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 108 TGSYDKAVRLWSITDGASVRVFSD----------------HVSPVLSIAFSPCGKYLASG 151
           T S D  V+LW +   +   +  D                H   V  + F+  G +L + 
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 152 GTGSYDKAVRLWSITDGASVRV 173
           GT   D  +RLW+ ++G +  V
Sbjct: 264 GT---DNRMRLWNSSNGENTLV 282

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
           LA+ GSR    R+ +   M  ++ +VGH   +   +FHP+    + + S D A+RLW+I 
Sbjct: 83  LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
               V +F     H   VLS  +   G+ + S G    D +++LW I 
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 186

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
           LA+ GSR    R+ +   M  ++ +VGH   +   +FHP+    + + S D A+RLW+I 
Sbjct: 87  LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
               V +F     H   VLS  +   G+ + S G    D +++LW I 
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 190

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
           LA+ GSR    R+ +   M  ++ +VGH   +   +FHP+    + + S D A+RLW+I 
Sbjct: 124 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
               V +F     H   VLS  +   G+ + S G    D +++LW I 
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 227

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
           LA+ GSR    R+ +   M  ++ +VGH   +   +FHP+    + + S D A+RLW+I 
Sbjct: 88  LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
               V +F     H   VLS  +   G+ + S G    D +++LW I 
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 191

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
           LA+ GSR    R+ +   M  ++ +VGH   +   +FHP+    + + S D A+RLW+I 
Sbjct: 87  LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
               V +F     H   VLS  +   G+ + S G    D +++LW I 
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 190

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62  GLALTGSRDTTARLWSLEQM-------YPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
           G  L+ S D T  LW +  +           IF GH    +DV+    H  +   G+ + 
Sbjct: 191 GHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL--FGSVAD 248
Query: 112 DKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
           D+ + +W      + +       H + V  ++F+P  +++ +  TGS DK V LW + + 
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 306
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
              +  F  H   +  + +SP  +  LAS G D
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.8
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.73
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.71
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.57
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.55
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.53
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.45
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.41
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.4
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.38
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.35
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.28
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.06
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.06
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.95
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.91
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.9
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.89
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.84
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.78
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.74
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.59
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.58
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.49
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.45
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.43
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.36
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.35
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.31
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.2
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.15
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.01
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.96
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.96
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.88
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.85
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.81
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.66
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.59
3ott_A	758	Two-component system sensor histidine kinase; beta	97.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.45
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.37
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.37
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.18
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.95
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.84
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.73
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.41
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.32
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.13
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.1
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.08
3ott_A	758	Two-component system sensor histidine kinase; beta	96.07
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.19
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.11
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.68
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	88.91
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.2
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.48
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.08
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.02
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.68
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.67
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	81.24

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.5e-48  Score=329.45  Aligned_cols=277  Identities=18%  Similarity=0.279  Sum_probs=252.5

Q ss_pred             CCCCccceEEeeecCCc--cccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            7 NHGDHKHFIQNSFKPET--VEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~--~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      ..+|...|.+++|+|+.  .+++|++|+.|+.|++|++...       +.+|...|.+++|++++.+ ++++.|++|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            46899999999999851  1568999999999999998755       6789999999999999988 999999999999


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      |+++++.+..+..|...+.+++|+|++++|++++.||.+++||+++++....+..+...+.+++|+|++++|++++.   
T Consensus       108 d~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~---  184 (321)
T 3ow8_A          108 DLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI---  184 (321)
T ss_dssp             ETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET---
T ss_pred             ECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC---
Confidence            99999999999999999999999999999999999999999999999999889889999999999999999999999   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      |+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++++....+. .|...|.+++|+|++++|
T Consensus       185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEE
Confidence            9999999999999999999999999999999999999999999999999999998888775 567889999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          237 VTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ++++.|+.|++||+.+++.+..     ..+..++|+|++..+++++.++.   +++|+.
T Consensus       264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~---i~vwd~  319 (321)
T 3ow8_A          264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE---IHIYDC  319 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC---EEEEEC
T ss_pred             EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe---EEEEeC
Confidence            9999999999999999987765     45678999999999999988874   556653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-48  Score=341.57  Aligned_cols=275  Identities=18%  Similarity=0.298  Sum_probs=256.0

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+|..+|.+++|+|+  +++|++|+.||.|++||+.+.     +.+|...|.+++|+|++.+ ++|+.|++|++||+.
T Consensus       103 ~l~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             EEECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eecccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            35689999999999999  999999999999999999876     7789999999999999988 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      +++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++..+..+.+|...|.+++++|++.++++++.   |+.
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~---D~~  257 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN---DQT  257 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSC
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC---CCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCC--------------------CcEEEEEcCCCeEEEEEcCCCcEEEEeecc
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPC--------------------GKYLASGGEDGLVLTHELTTGRVISRFHLQ  219 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  219 (351)
                      |++||+++++....+..|...|.+++|+|+                    +.+|++|+.|+.|++||+++++.+..+. .
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~  336 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-G  336 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-C
Confidence            999999999999999999999999999996                    6789999999999999999999888875 5


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          220 EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       220 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      |...|.+++|+|++++|++|+.||.|++||+.+++.+..     ..+..++|+|++..+++++.|+.   +++|+
T Consensus       337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~---i~vW~  408 (410)
T 1vyh_C          337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT---VKVWE  408 (410)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE---EEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEe
Confidence            778899999999999999999999999999998876654     45678999999999999988874   55565

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-46  Score=323.73  Aligned_cols=275  Identities=21%  Similarity=0.313  Sum_probs=248.3

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+|..+|.+++|+|+  +++|++++.||.|++||....     ...|...|.+++|+|++.+ ++++.|+.+++|++.
T Consensus        50 ~l~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EECCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             eecCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            35789999999999999  999999999999999998876     5678999999999999988 999999999999998


Q ss_pred             CC----eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           80 QM----YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        80 ~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      +.    +....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.  
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~--  204 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC--  204 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC--
Confidence            65    35567789999999999998765 889999999999999999999999999999999999999999999999  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGE  234 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  234 (351)
                       |+.|++||+++++....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+.... ...|.+++|+|+++
T Consensus       205 -d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          205 -DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             -TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             -CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence             9999999999999999999999999999999999999999999999999999988877664222 24799999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          235 TLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +|++|+.||.|++||+.+++.+..     ..+..++|+|++..+++++.++.   +++|+
T Consensus       284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~---i~iWd  340 (340)
T 1got_B          284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF---LKIWN  340 (340)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC---EEEEC
T ss_pred             EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc---EEecC
Confidence            999999999999999998877654     46678999999999999998875   45553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-46  Score=319.30  Aligned_cols=273  Identities=19%  Similarity=0.243  Sum_probs=242.5

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ++.....+|...|.+++|+|+  +++|++++.||.|++||+.+.     +..|..+|.+++|+|++++ ++|+.|++|++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eeEEeecCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            445667889999999999999  999999999999999999876     6678999999999999988 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEcc-CCCEEEEEec
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  153 (351)
                      ||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++++ .....+.+|...|.+++|+| ++..|++++.
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999887 45567888999999999999 6789999999


Q ss_pred             CCCCCeEEEEEccCCceeEEec-cCCCCEEEEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          154 GSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                         |+.|++||++++.....+. .|...+..+.|+|  ++.+|++++.|+.|++||+++++.+..+. .|...|..++|+
T Consensus       162 ---D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~  237 (304)
T 2ynn_A          162 ---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFH  237 (304)
T ss_dssp             ---TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEC
T ss_pred             ---CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEEC
Confidence               9999999998877665554 5667899999987  77899999999999999999999988886 577899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeeee-----ecceeEEecCCce--eeeeeccc
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGIG-----VYPRCAAQPVGFE--AATLAANS  280 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~s~~~~~--~~~~~~~~  280 (351)
                      |++++|++|+.||.|++||+.+++.....     .+..++++|++..  ++++..++
T Consensus       238 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence            99999999999999999999999877653     4457888998863  55554443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-45  Score=315.00  Aligned_cols=278  Identities=23%  Similarity=0.302  Sum_probs=246.2

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTA   73 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i   73 (351)
                      ....+|...|.+++|+|+. +++|++++.|++|++|++...          +.+|...|.+++|+|++.+ ++++.|++|
T Consensus        11 ~~l~gH~~~V~~l~~~~~~-~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQ-PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEccccceEEEEEccCCC-ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            3457999999999999961 489999999999999998642          6789999999999999988 999999999


Q ss_pred             EEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC------CCE
Q psy519           74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC------GKY  147 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~  147 (351)
                      ++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++ ++.+..+.+|...|.+++|+|.      +..
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence            999999999999999999999999999999999999999999999986 5677788889999999999985      448


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL  227 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  227 (351)
                      +++++.   |+.|++||+++.+....+.+|..+|.+++|+|++++|++++.||.|++||+++++.+..+.  ....+.++
T Consensus       169 l~s~~~---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~  243 (319)
T 3frx_A          169 IISAGN---DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSL  243 (319)
T ss_dssp             EEEEET---TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEE
T ss_pred             EEEEeC---CCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEE
Confidence            999998   9999999999999999999999999999999999999999999999999999999888775  45789999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------------eecceeEEecCCceeeeeeccceeeEEEeeeceeC
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +|+|++.+|++++.+ .+++|++.....+..             ..+.+++|+|+|+.+++++.++   .+++|+..++
T Consensus       244 ~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg---~i~vWd~~t~  318 (319)
T 3frx_A          244 AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN---VIRVWQVMTA  318 (319)
T ss_dssp             EECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS---CEEEEEEEEC
T ss_pred             EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc---eEEEEEEeec
Confidence            999999999988754 699999987665543             2345789999999999998887   4566665543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-45  Score=319.62  Aligned_cols=274  Identities=20%  Similarity=0.280  Sum_probs=246.2

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+|...|.+++|+|+  +++|++++.|+.|++||....     ...|...|.+++|+|++.+ ++++.|+.+++|++.
T Consensus        59 ~l~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EecCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            45789999999999999  999999999999999998766     5567889999999999988 999999999999986


Q ss_pred             CC------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc--CCCEEEEE
Q psy519           80 QM------YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP--CGKYLASG  151 (351)
Q Consensus        80 ~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~  151 (351)
                      ..      .....+..|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++|+|  ++++|+++
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence            43      34456778999999999999999999999999999999999999999999999999999988  57899999


Q ss_pred             ecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEc
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWS  230 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~  230 (351)
                      +.   |+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++.++.+..+.... ...+.+++|+
T Consensus       217 s~---Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          217 GC---DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             ET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             eC---CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            99   9999999999999999999999999999999999999999999999999999888776664322 2478999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeE
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      |++++|++|+.|+.|++||+.+++.+..     ..+..++|+|+|..+++++.++.++.
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV  352 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence            9999999999999999999998887654     56778999999999999998885443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-45  Score=342.42  Aligned_cols=311  Identities=16%  Similarity=0.155  Sum_probs=262.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC----CcE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD----TTA   73 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d----~~i   73 (351)
                      ...+|...|.+++|||+  |++||+|+.|++|++||+...       +.+|.+.|.+++|+|++++ ++++.+    +.|
T Consensus        54 ~~~~h~~~v~~~~~spd--g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             EECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             EecCCCCceEEEEECCC--CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            45689999999999999  999999999999999998643       5678999999999999988 666654    367


Q ss_pred             EEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      ++||  .++....+.+|...|.+++|+|++. .|++++.|++|++||..+++....+.+|...|.+++|+|++++|++++
T Consensus       132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            7777  4566778899999999999999987 699999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEccCCceeEEec-------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee--------
Q psy519          153 TGSYDKAVRLWSITDGASVRVFS-------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH--------  217 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------  217 (351)
                      .   |+.|++||+++++.+..+.       +|...|.+++|+|++++|++++.|+.|++||+++++.+..+.        
T Consensus       210 ~---D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          210 G---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             T---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             C---CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            9   9999999999999888874       799999999999999999999999999999999877655432        


Q ss_pred             ----------------------------------ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----
Q psy519          218 ----------------------------------LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----  258 (351)
Q Consensus       218 ----------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----  258 (351)
                                                        ..|...|.+++|+|++++|++++.|+.|++||+.+++....     
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h  366 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH  366 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence                                              13557899999999999999999999999999876543211     


Q ss_pred             --------------------------------------------------------------------------------
Q psy519          259 --------------------------------------------------------------------------------  258 (351)
Q Consensus       259 --------------------------------------------------------------------------------  258 (351)
                                                                                                      
T Consensus       367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~  446 (611)
T 1nr0_A          367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP  446 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred             cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence                                                                                            


Q ss_pred             --eecceeEEecCCceeeeeeccceeeEEEeeeceeC---------ceEEEeeEEEEecCCceeeccEEEecCCccccce
Q psy519          259 --GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG---------PVVVVESFIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                        ..+..++|+|+|+.+++++.++.   +++|+...+         +...+.+  +.|+|++.++... ..+..++.|++
T Consensus       447 ~~~~v~~va~spdg~~lasgs~D~~---v~lwd~~~~~~~~~~~~~h~~~v~~--v~fspdg~~las~-s~d~~v~~w~~  520 (611)
T 1nr0_A          447 ISYNSSCVALSNDKQFVAVGGQDSK---VHVYKLSGASVSEVKTIVHPAEITS--VAFSNNGAFLVAT-DQSRKVIPYSV  520 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSE---EEEEEEETTEEEEEEEEECSSCEEE--EEECTTSSEEEEE-ETTSCEEEEEG
T ss_pred             cCCCceEEEEeCCCCEEEEeCCCCe---EEEEEccCCceeeeeccCCCCceEE--EEECCCCCEEEEE-cCCCCEEEEEc
Confidence              01235789999999999988875   555554433         2223444  7899999987654 67888999988


Q ss_pred             ee
Q psy519          328 ET  329 (351)
Q Consensus       328 ~~  329 (351)
                      ..
T Consensus       521 ~~  522 (611)
T 1nr0_A          521 AN  522 (611)
T ss_dssp             GG
T ss_pred             CC
Confidence            75

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.9e-46  Score=320.65  Aligned_cols=276  Identities=14%  Similarity=0.157  Sum_probs=231.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------------cCCCccceEEEEECCCCcEEEEeCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------------TSGHDMTVWSVEACSKGLALTGSRDT   71 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------------~~~~~~~i~~~~~~~~~~~~~~~~d~   71 (351)
                      ..|...|.+++|+||  |++|++++ |+++++|+....                ...+...|.+++|+|++.+++++.||
T Consensus        27 ~~~~~~v~~~~fs~d--G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg  103 (344)
T 4gqb_B           27 ACMERQLEAARYRSD--GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSG  103 (344)
T ss_dssp             SSCCSEEEEEEECTT--SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTS
T ss_pred             ccccCCEEEEEECCC--CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCC
Confidence            346788999999999  99999876 778888873211                22345679999999999889999999


Q ss_pred             cEEEEeCCCCeeeEE----eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-
Q psy519           72 TARLWSLEQMYPLRI----FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-  146 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-  146 (351)
                      +|+|||+++++.+..    ..+|...|++++|+|++++|++|+.|++|++||+++++.+..+.+|...|.+++|+|++. 
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence            999999998875443    358999999999999999999999999999999999999999999999999999999885 


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEec--cCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      +|++++.   |+.|++||+++++....+.  .+...+.+++|+| ++++|++|+.||.|++||+++++.+..+. .|...
T Consensus       184 ~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~  259 (344)
T 4gqb_B          184 VFLSCSE---DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQC  259 (344)
T ss_dssp             EEEEEET---TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSC
T ss_pred             ceeeecc---ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCC
Confidence            6788888   9999999999998888764  4556789999999 55789999999999999999999988886 57789


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCce-eeeeeccceeeEEEeeeceeC
Q psy519          224 VTSLVWSVTG-ETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFE-AATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       224 v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      |.+++|+|++ ++|++|+.|+.|++||+.+++....    ..+.+++|+|++.. +++++.|+.   +++|+..+.
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~---v~~w~v~~~  332 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ---VVHHVVPTE  332 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC---EEEEECCC-
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe---EEEEECCCC
Confidence            9999999998 5799999999999999999877643    56778999999875 556666764   556665443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.5e-46  Score=322.59  Aligned_cols=276  Identities=17%  Similarity=0.141  Sum_probs=233.3

Q ss_pred             CCCccceEEeeecCCccccEEEEecC------CCceEEEecCCc---------cCCCccceEEEEECCCCcEEEEeCCCc
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLES------QKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLALTGSRDTT   72 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~------~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~d~~   72 (351)
                      ..|...|.+++||||  |++||+++.      |+.|++|+....         ..+|...|.+++|+|++.+++++.|++
T Consensus        39 ~~H~~~V~~v~fSpD--G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~  116 (357)
T 4g56_B           39 ACMEVQIGAVRYRRD--GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGA  116 (357)
T ss_dssp             -CCCSEEEEEEECSS--SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSC
T ss_pred             ccccCCEEEEEECCC--CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCE
Confidence            458999999999999  999999987      678999987665         346888999999999999999999999


Q ss_pred             EEEEeCCCCeeeE----EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-E
Q psy519           73 ARLWSLEQMYPLR----IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-Y  147 (351)
Q Consensus        73 i~vw~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  147 (351)
                      |++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++. +
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence            9999998876542    3347999999999999999999999999999999999999999999999999999999875 7


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEec--cCCCCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      +++++.   |+.|++||+++++....+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+. .+...|
T Consensus       197 ~~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v  272 (357)
T 4g56_B          197 FLSCGE---DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNI  272 (357)
T ss_dssp             EEEEET---TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCE
T ss_pred             eeeecc---CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeE
Confidence            888888   9999999999987766543  46678999999997 5689999999999999999999888875 566899


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeee----eecceeEEec-CCceeeeeeccceeeEEEeeecee
Q psy519          225 TSLVWSVTG-ETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQP-VGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       225 ~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      .+++|+|++ ++|++|+.|+.|+|||+++++.+..    ..+..++|+| ++..+++++.|+   .+++|+..+
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg---~v~iW~~~~  343 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH---KVLHHHLPS  343 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS---CEEEEECC-
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC---eEEEEECCC
Confidence            999999987 5799999999999999999887754    5677899999 788899988887   456666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-45  Score=340.04  Aligned_cols=314  Identities=19%  Similarity=0.196  Sum_probs=263.9

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCC----CceEEEecCCc---cCCCccceEEEEECCCCc--EEEEeCCCcEEEEe
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQ----KNLQSRYLPYY---TSGHDMTVWSVEACSKGL--ALTGSRDTTARLWS   77 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~----~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~--~~~~~~d~~i~vw~   77 (351)
                      ..+|..+|.+++|+|+  +++|++++.+    +.|++|+....   +.+|...|++++|+|++.  +++++.|++|++||
T Consensus        99 ~~~~~~~v~~v~fs~d--g~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd  176 (611)
T 1nr0_A           99 IPVFSGPVKDISWDSE--SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  176 (611)
T ss_dssp             EECSSSCEEEEEECTT--SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             ecccCCceEEEEECCC--CCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence            3578899999999999  9999988765    47888886544   789999999999999985  59999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec-------cCCCCeEEEEEccCCCEEEE
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS-------DHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~  150 (351)
                      ..+++....+.+|...|.+++|+|++++|++++.|++|++||+.+++....+.       +|...|.+++|+|++++|++
T Consensus       177 ~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          177 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999888874       69999999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCceeE-------------------------------------------EeccCCCCEEEEEEC
Q psy519          151 GGTGSYDKAVRLWSITDGASVR-------------------------------------------VFSDHVSPVLSIAFS  187 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~  187 (351)
                      ++.   |+.|++||+++++.+.                                           .+.+|...|.+++|+
T Consensus       257 ~s~---D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s  333 (611)
T 1nr0_A          257 ASA---DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS  333 (611)
T ss_dssp             EET---TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EeC---CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence            999   9999999998775443                                           334688899999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEcCCCcEEEEee--------------------------------------------------
Q psy519          188 PCGKYLASGGEDGLVLTHELTTGRVISRFH--------------------------------------------------  217 (351)
Q Consensus       188 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------  217 (351)
                      |++++|++++.|+.|++||+.+++....+.                                                  
T Consensus       334 pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~  413 (611)
T 1nr0_A          334 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ  413 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence            999999999999999999998765432210                                                  


Q ss_pred             -------------------------------ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------eeee
Q psy519          218 -------------------------------LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI------GIGV  260 (351)
Q Consensus       218 -------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~  260 (351)
                                                     ..+...+.+++|+|+|++|++|+.|+.|++||+.+++..      +...
T Consensus       414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~  493 (611)
T 1nr0_A          414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE  493 (611)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred             CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCc
Confidence                                           001234678999999999999999999999999876432      2245


Q ss_pred             cceeEEecCCceeeeeeccceeeEEEeeecee-----------CceEEEeeEEEEecCCceeeccEEEecCCccccceee
Q psy519          261 YPRCAAQPVGFEAATLAANSRVRTLREMHEIV-----------GPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLET  329 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  329 (351)
                      +.+++|+|+|+.+++++.++.+   ++|+...           +|...+.+  +.|+|++.++... ..|..+++|+++.
T Consensus       494 v~~v~fspdg~~las~s~d~~v---~~w~~~~~~~~~~~~~~~~H~~~V~~--v~fspdg~~lasg-s~D~~v~lW~~~~  567 (611)
T 1nr0_A          494 ITSVAFSNNGAFLVATDQSRKV---IPYSVANNFELAHTNSWTFHTAKVAC--VSWSPDNVRLATG-SLDNSVIVWNMNK  567 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCE---EEEEGGGTTEESCCCCCCCCSSCEEE--EEECTTSSEEEEE-ETTSCEEEEETTC
T ss_pred             eEEEEECCCCCEEEEEcCCCCE---EEEEcCCCCceeeeeeeeecccceeE--EEECCCCCEEEEE-ECCCcEEEEECCC
Confidence            7789999999999999888755   4555443           24445555  8899999987655 6889999999976


Q ss_pred             ee
Q psy519          330 YS  331 (351)
Q Consensus       330 ~~  331 (351)
                      ..
T Consensus       568 ~~  569 (611)
T 1nr0_A          568 PS  569 (611)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5e-45  Score=315.34  Aligned_cols=281  Identities=20%  Similarity=0.245  Sum_probs=238.9

Q ss_pred             cCCCCcc-ceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            6 LNHGDHK-HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         6 ~~~~~~~-~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ...+|.. .|.+++|+|+  |++||+++.|+.|++|++...        ..+|...|.+++|+|++.+ ++++.|+++++
T Consensus        10 ~~~~h~~~~v~~l~~sp~--g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPA--GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTT--SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCC--CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence            3457777 9999999999  999999999999999998765        3689999999999999987 99999999999


Q ss_pred             EeCCCC--eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---eeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           76 WSLEQM--YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        76 w~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      |++.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||++++.   .+..+..|...|.+++|+|++++|++
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            998866  4567888999999999999999999999999999999998764   45667889999999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC---------------cEE
Q psy519          151 GGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG---------------RVI  213 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~~~  213 (351)
                      ++.   |+.|++||+++++  ....+.+|...|.+++|+|++++|++++.|+.|++||....               +.+
T Consensus       168 ~s~---d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          168 ASY---DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EeC---CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            999   9999999998875  45678899999999999999999999999999999997432               223


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------e------eeeecceeEEecCCc-eeeeeec
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK--------I------GIGVYPRCAAQPVGF-EAATLAA  278 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--------~------~~~~~~~~~~s~~~~-~~~~~~~  278 (351)
                      ..+...|...|.+++|+|++..|++++.|+.|++|+......        .      +...+..++|+|++. .+++++.
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~  324 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD  324 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence            334333667899999999999999999999999999875421        0      124577899999985 7888888


Q ss_pred             cceeeEEEeeeceeCc
Q psy519          279 NSRVRTLREMHEIVGP  294 (351)
Q Consensus       279 ~~~~~~~~~~~~~~g~  294 (351)
                      |+   .+++|+...++
T Consensus       325 Dg---~v~~W~~~~~~  337 (345)
T 3fm0_A          325 DG---EVAFWKYQRPE  337 (345)
T ss_dssp             TS---CEEEEEECC--
T ss_pred             CC---cEEEEEecCCC
Confidence            77   45666655544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-43  Score=301.37  Aligned_cols=279  Identities=23%  Similarity=0.389  Sum_probs=244.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+|...|.+++|+|+  +++|++++.||.|++|+....     +.+|...|.+++|+|++++ ++++.|+.|++||++
T Consensus        18 ~~~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEcccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            35689999999999999  999999999999999999776     6789999999999999987 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      +++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|+++++++++.   |+.
T Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~  172 (312)
T 4ery_A           96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGL  172 (312)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSC
T ss_pred             CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC---CCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             EEEEEccCCceeEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC--CEEEEEEcCCCCEE
Q psy519          160 VRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE--PVTSLVWSVTGETL  236 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l  236 (351)
                      |++||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||+++++.+..+......  .+......+++.+|
T Consensus       173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
T 4ery_A          173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI  252 (312)
T ss_dssp             EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred             EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence            9999999998877664 45678999999999999999999999999999999988877532221  22333344678999


Q ss_pred             EEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          237 VTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ++|+.||.|++||+.+++.+..     ..+..++|+|++..+++++. +.++.+++|+.
T Consensus       253 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-~~d~~i~~W~~  310 (312)
T 4ery_A          253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL-ENDKTIKLWKS  310 (312)
T ss_dssp             EECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC-TTTCCEEEEEC
T ss_pred             EEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc-cCCccEEEecC
Confidence            9999999999999999887754     44667999999999887763 12335666653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-43  Score=306.46  Aligned_cols=276  Identities=21%  Similarity=0.299  Sum_probs=234.9

Q ss_pred             CcCCCCccceEEeee-----cC-CccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCCcE-E
Q psy519            5 HLNHGDHKHFIQNSF-----KP-ETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKGLA-L   65 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~-----sp-~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~~~-~   65 (351)
                      ....+|...|.+++|     +| +  +++|++|+.|++|++|++...            +.+|...|.+++|+|++.+ +
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d--~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENED--SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCC--CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCC--CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            346789999999999     77 8  999999999999999998642            5789999999999999988 9


Q ss_pred             EEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEEc
Q psy519           66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFS  142 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~  142 (351)
                      +++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... .....   ..|...|.+++|+
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~  171 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYS  171 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEEC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeec
Confidence            9999999999999999999999999999999999999999999999999999999743 33333   2688899999999


Q ss_pred             cCC----------CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC-Cc
Q psy519          143 PCG----------KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT-GR  211 (351)
Q Consensus       143 ~~~----------~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~  211 (351)
                      |++          .++++++.   |+.|++|| ...+....+..|...|.+++|+|++++|++++.||.|++||+.+ ..
T Consensus       172 ~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          172 PIMKSANKVQPFAPYFASVGW---DGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             CCCCSCSCCCSSCCEEEEEET---TSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             cccccccccCCCCCEEEEEcC---CCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            987          78999998   99999999 45667778889999999999999999999999999999999954 33


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee------------------eeecceeEEecCCcee
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG------------------IGVYPRCAAQPVGFEA  273 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~------------------~~~~~~~~~s~~~~~~  273 (351)
                      ....+  .+...|.+++|+|++.+++++ .|+.|++|++.+++...                  ...+..++|+|+|..+
T Consensus       248 ~~~~~--~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          248 PQREF--DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             CSEEE--ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             cceee--cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            33333  245679999999999988765 57889999998765432                  1235679999999999


Q ss_pred             eeeeccceeeEEEeeeceeC
Q psy519          274 ATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~g  293 (351)
                      ++++.++   .+++|+..+|
T Consensus       325 ~sg~~Dg---~v~~w~~~~g  341 (343)
T 2xzm_R          325 FAGFTDG---VIRTFSFETS  341 (343)
T ss_dssp             EEEETTS---EEEEEEEEEE
T ss_pred             EEecCCc---eEEEEEEEcc
Confidence            9998887   5666665554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4e-45  Score=320.05  Aligned_cols=279  Identities=22%  Similarity=0.338  Sum_probs=245.0

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+|...|.+++|+|+  +++|++|+.|++|++||+...     +..|...|.+++|+|++++ ++++.|+.+++|++.
T Consensus        61 ~l~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EECCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             cccccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            46789999999999999  999999999999999999876     6789999999999999988 999999999999987


Q ss_pred             CCe-------eeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEe-----ccCCCCeEEEEEcc-CC
Q psy519           80 QMY-------PLRIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGASVRVF-----SDHVSPVLSIAFSP-CG  145 (351)
Q Consensus        80 ~~~-------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~-~~  145 (351)
                      +..       ....+.+|...+.++.|+|+ +..|++++.|++|++||+++++.+..+     .+|...|.+++|+| ++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence            532       34567799999999999996 457999999999999999999988776     56889999999987 88


Q ss_pred             CEEEEEecCCCCCeEEEEEcc-CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC---
Q psy519          146 KYLASGGTGSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH---  221 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---  221 (351)
                      +++++|+.   |+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.....   
T Consensus       219 ~~l~sgs~---D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          219 NMFISGSC---DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND  295 (380)
T ss_dssp             CEEEEEET---TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred             CEEEEEEC---CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence            99999999   9999999998 4577888999999999999999999999999999999999999998877653222   


Q ss_pred             ---CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---------eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          222 ---EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI---------GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       222 ---~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                         ..+.+++|+|+|++|++|+.||.|++||+..++....         ..+..++|+|+|..+++++.|+   .+++|+
T Consensus       296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~iW~  372 (380)
T 3iz6_a          296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK---NLKIWA  372 (380)
T ss_dssp             CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS---CEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC---CEEEEe
Confidence               2489999999999999999999999999988776532         4678899999999999998887   456666


Q ss_pred             cee
Q psy519          290 EIV  292 (351)
Q Consensus       290 ~~~  292 (351)
                      ...
T Consensus       373 ~~~  375 (380)
T 3iz6_a          373 FSG  375 (380)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=303.88  Aligned_cols=239  Identities=16%  Similarity=0.295  Sum_probs=227.4

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|...|.+++|+|+  +.++++++.|+.|++||+...     ...|...+.+++|+|++++ ++++.|+.|++|++++
T Consensus        76 l~gh~~~v~~~~~~~~--~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~  153 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHT--LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES  153 (321)
T ss_dssp             ECCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred             eccCCCCEEEEEECCC--CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence            5789999999999999  999999999999999999876     5577888999999999988 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ++....+..|...+.+++|+|++++|++++.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.   |+.|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~---dg~i  230 (321)
T 3ow8_A          154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD---DGYI  230 (321)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT---TSCE
T ss_pred             CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC---CCeE
Confidence            9999899999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ++||+++++....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .|...|.+++|+|++++|++++
T Consensus       231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999988875 5778999999999999999999


Q ss_pred             CCCeEEEEeCC
Q psy519          241 LTGTVQFYGWP  251 (351)
Q Consensus       241 ~dg~i~i~~~~  251 (351)
                      .||.|++||++
T Consensus       310 ~d~~i~vwd~p  320 (321)
T 3ow8_A          310 DDQEIHIYDCP  320 (321)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCeEEEEeCC
Confidence            99999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-43  Score=301.98  Aligned_cols=276  Identities=20%  Similarity=0.248  Sum_probs=226.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------c-CC-CccceEEEEECCCCcE-EEEeCCCcEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------T-SG-HDMTVWSVEACSKGLA-LTGSRDTTAR   74 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~-~~-~~~~i~~~~~~~~~~~-~~~~~d~~i~   74 (351)
                      ....+|..+|.+++|+|+    +||+++.|+.|++|++...       + .+ |...|.+++|+|++.+ ++++.|++|+
T Consensus         8 ~~~~~h~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEECCSSCEEEEEEETT----EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeccCCCceeeeccCCC----EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            445789999999999966    8999999999999999763       2 34 9999999999999987 9999999999


Q ss_pred             EEeCCC-------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEeccCCCCeEEEEEcc
Q psy519           75 LWSLEQ-------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG----ASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        75 vw~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~  143 (351)
                      +|+++.       .+.+..+.+|...|.+++|+|++++|++++.|++|++||++..    +.+..+.+|...|.+++|+|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            999853       3566778899999999999999999999999999999999532    45677888999999999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCC--ceeEEeccCCCCEEEEEECCC--CcEEEEEcCCCeEEEEEcCCC--------c
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHELTTG--------R  211 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~  211 (351)
                      ++++|++++.   |+.|++||.+++  +.+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+        .
T Consensus       164 ~~~~l~s~s~---D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          164 SEALLASSSY---DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             SSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCEEEEEcC---CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999   999999999876  577888999999999999998  678999999999999998754        2


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeee------e-ecceeEEec--CCceeeeeeccc
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS--KIGI------G-VYPRCAAQP--VGFEAATLAANS  280 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~------~-~~~~~~~s~--~~~~~~~~~~~~  280 (351)
                      ....+...|...|.+++|++++ +|++++.||.|++|+..+++  ....      . .+..++|+|  ++..+++++.++
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            3333332366889999999765 78999999999999998764  2211      1 566789999  688899998887


Q ss_pred             eeeEEEeeece
Q psy519          281 RVRTLREMHEI  291 (351)
Q Consensus       281 ~~~~~~~~~~~  291 (351)
                         .+++|+..
T Consensus       320 ---~v~~W~~~  327 (330)
T 2hes_X          320 ---IVNFWSLE  327 (330)
T ss_dssp             ---EEEEEEC-
T ss_pred             ---cEEEEEec
Confidence               45666643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-42  Score=303.76  Aligned_cols=271  Identities=25%  Similarity=0.323  Sum_probs=232.2

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCC------------------ccceEEEEECCCCcE-
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGH------------------DMTVWSVEACSKGLA-   64 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~------------------~~~i~~~~~~~~~~~-   64 (351)
                      +|...|.+++|||+  |++||+++ ++.+++|++..+     +..|                  ...|.+++|+|+|++ 
T Consensus        62 ~h~~~V~~v~fspd--g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCC--CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            58899999999999  99999986 689999998776     2222                  224999999999988 


Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-  143 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-  143 (351)
                      ++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++|+| 
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  217 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECST
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999998877776 567899999999 


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEEe-------ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc-----
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRVF-------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR-----  211 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  211 (351)
                      +++++++++.   |+.|++||+++++.+..+       .+|...|.+++|+|++++|++++.|+.|++||+++..     
T Consensus       218 ~~~~l~~~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          218 DGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             TCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             CCCEEEEEcC---CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            8999999999   999999999999877766       5688999999999999999999999999999997642     


Q ss_pred             -------EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEec------CCcee
Q psy519          212 -------VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQP------VGFEA  273 (351)
Q Consensus       212 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~------~~~~~  273 (351)
                             ....+. .|...|.+++|+|++.+|++|+.|+.|++||+.+++.+..     ..+..++|+|      ++..+
T Consensus       295 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l  373 (393)
T 1erj_A          295 KTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  373 (393)
T ss_dssp             ------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence                   233332 5667899999999999999999999999999999987754     3455677765      67888


Q ss_pred             eeeeccceeeEEEeeec
Q psy519          274 ATLAANSRVRTLREMHE  290 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (351)
                      ++++.|+.   +++|+.
T Consensus       374 ~sgs~Dg~---i~iW~~  387 (393)
T 1erj_A          374 ATGSGDCK---ARIWKY  387 (393)
T ss_dssp             EEEETTSE---EEEEEE
T ss_pred             EEECCCCc---EEECcc
Confidence            88888875   555553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.5e-43  Score=309.99  Aligned_cols=241  Identities=25%  Similarity=0.424  Sum_probs=226.9

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ....+|...|.+++|+|+  +++|++|+.|+.|++||+...     +.+|...|.+++|+|++.+ ++++.|++|++||+
T Consensus       144 ~~l~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHS--GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             EEECCCSSCEEEEEECTT--SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             EEEeccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            345789999999999999  999999999999999999876     6789999999999999987 99999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC--------------
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC--------------  144 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------  144 (351)
                      .+++++..+.+|...|.++.++|++.+|++++.|+.|++||+++++....+..|...|.+++|+|+              
T Consensus       222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  301 (410)
T 1vyh_C          222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET  301 (410)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred             CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999996              


Q ss_pred             ------CCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          145 ------GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       145 ------~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                            +.+|++++.   |+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. 
T Consensus       302 ~~~~~~g~~l~sgs~---D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-  377 (410)
T 1vyh_C          302 KKSGKPGPFLLSGSR---DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-  377 (410)
T ss_dssp             ------CCEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-
T ss_pred             cccCCCCCEEEEEeC---CCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-
Confidence                  678999999   9999999999999999999999999999999999999999999999999999999888875 


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          219 QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       219 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .|...|.+++|+|++.+|++|+.||.|++|+++
T Consensus       378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            577899999999999999999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=302.09  Aligned_cols=238  Identities=20%  Similarity=0.224  Sum_probs=208.3

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      +...|.+++|+|+  + .|++++.||.|++||+.+.         ..+|.+.|++++|+|+|++ ++|+.|++|++||++
T Consensus        81 ~~~~v~~~~~s~d--~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           81 TEAGVADLTWVGE--R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             ESSCEEEEEEETT--T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCCEEEEEEeCC--C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            4567999999999  6 5778899999999999876         3479999999999999988 999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEec--cCCCCeEEEEEccC-CCEEEEEecCC
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPC-GKYLASGGTGS  155 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~~~  155 (351)
                      +++.+..+.+|...|.+++|+|++. +|++++.|++|++||+++++....+.  .+...+.+++|+|+ ++++++|+.  
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~--  235 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE--  235 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET--
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc--
Confidence            9999999999999999999999874 78999999999999999999887764  35567999999995 567888888  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                       |+.|++||+++++.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++... + ..|...|.+++|+|+++
T Consensus       236 -dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          236 -NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             -TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEECSSST
T ss_pred             -CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEeCCCC
Confidence             9999999999999999999999999999999998 579999999999999999887654 3 36778999999999886


Q ss_pred             -EEEEEeCCCeEEEEeCCCCce
Q psy519          235 -TLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       235 -~l~~~~~dg~i~i~~~~~~~~  255 (351)
                       +|++++.|++|++|++++...
T Consensus       313 ~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC---
T ss_pred             eEEEEEcCCCeEEEEECCCCCC
Confidence             677899999999999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.6e-42  Score=315.76  Aligned_cols=303  Identities=26%  Similarity=0.412  Sum_probs=263.2

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ..+|...|.+++|+|+  +++|++++.|+.|++|+....    ..+|...|.+++|+|++.+ ++++.|+.|++||+.. 
T Consensus       258 ~~~~~~~v~~v~~~~d--~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-  334 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-  334 (577)
T ss_dssp             ECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred             EecCCCCEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-
Confidence            4678999999999999  999999999999999998766    6789999999999999987 9999999999999865 


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +.+..+.+|...+.+++|+|+++++++++.|+.+++||. +++.+..+..|...|.+++|+|++++|++++.   |+.|+
T Consensus       335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---d~~v~  410 (577)
T 2ymu_A          335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVK  410 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEET---TSEEE
T ss_pred             CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCEEE
Confidence            456678899999999999999999999999999999995 57788888899999999999999999999998   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||+ +++.+..+. .|...|.+++|+|++++|++++.
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSCEEEEEET
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            9995 67788889999999999999999999999999999999996 566666665 57789999999999999999999


Q ss_pred             CCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec-------eeCceEEEeeEEEEecCCc
Q psy519          242 TGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE-------IVGPVVVVESFIVEIRPDK  309 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~  309 (351)
                      |+.|++||. +++.+..     ..+..++|+|+++.+++++.++.   +++|+.       ..||...+.+  +.|+||+
T Consensus       488 d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~---v~lwd~~~~~~~~~~~h~~~v~~--~~fs~dg  561 (577)
T 2ymu_A          488 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT---VKLWNRNGQLLQTLTGHSSSVWG--VAFSPDG  561 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE---EEEECTTSCEEEEEECCSSCEEE--EEECTTS
T ss_pred             CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE---EEEEeCCCCEEEEEcCCCCCEEE--EEEcCCC
Confidence            999999996 4555443     46678999999999999988874   566663       2334344444  7899999


Q ss_pred             eeeccEEEecCCccccc
Q psy519          310 WYEANLIVLDDDLKECN  326 (351)
Q Consensus       310 ~~~~~~~~~~~~i~~~~  326 (351)
                      .++... ..|..++.||
T Consensus       562 ~~l~s~-~~D~~i~~Wd  577 (577)
T 2ymu_A          562 QTIASA-SSDKTVKLWN  577 (577)
T ss_dssp             SCEEEE-ETTSCEEEEC
T ss_pred             CEEEEE-eCCCEEEEeC
Confidence            987653 5677888886

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.5e-42  Score=290.65  Aligned_cols=276  Identities=20%  Similarity=0.224  Sum_probs=234.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.|++++|+|++.+ ++++.|++|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+.+++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~   88 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            5689999999999999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLV  202 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  202 (351)
                      .+..+.+|...|.+++|+|++++|++++.   |+.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEET---TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEECC---CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999   999999999987 45567889999999999999 67899999999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSV--TGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~  275 (351)
                      ++||++++.....+...+...+..+.|+|  ++.+|++|+.|+.|++||+++++.+..     ..+..++|+|++..+++
T Consensus       166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence            99999988777766655667899999987  778999999999999999999987754     45567899999999999


Q ss_pred             eeccceeeEEEeeeceeCceEEEee------EEEEecCCceeeccEEEecCCccccce
Q psy519          276 LAANSRVRTLREMHEIVGPVVVVES------FIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                      ++.++   .+++|+..+++......      ..+.+.|++.........++.+..+++
T Consensus       246 ~s~Dg---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          246 GSEDG---TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             EETTS---CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             EcCCC---eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence            98887   56777776665432221      114566666432223334555555544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-41  Score=289.89  Aligned_cols=271  Identities=16%  Similarity=0.215  Sum_probs=243.1

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .+|...|.+++|+|+  +++|++++ +|.|++|++...          ...|...|.+++|+|++++ ++++.|+.|++|
T Consensus        48 ~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           48 LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            368999999999999  99999998 999999999765          2278899999999999987 999999999999


Q ss_pred             eCCCCe--eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           77 SLEQMY--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        77 ~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      |+++++  ....+..|...+.+++|+|+++++++++.||.|++||+++++.+..+..|...+.+++|+|+++++++++. 
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  203 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-  203 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec-
Confidence            999877  56677889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                        |+.|++||+++++.+..+ .+..++.+++|+|+++++++++.++.|++||+++++... + ..+...+.+++|+|+++
T Consensus       204 --dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          204 --DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             --TSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSS
T ss_pred             --CCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCC
Confidence              999999999999888777 467889999999999999999999999999999887653 3 25678999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          235 TLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      +|++++.||.|++||+++++.+..    ..+..++|+|++..+++++.++.++.|++
T Consensus       279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999999887643    45678999999999999999886655543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-41  Score=293.18  Aligned_cols=270  Identities=16%  Similarity=0.237  Sum_probs=237.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.|++++|+|++.+ ++++.|++|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++||+.+.+
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            6789999999999999987 999999999999999999999999999999999999999999999999999999998753


Q ss_pred             ----eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          125 ----SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       125 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                          ....+.+|...|.++.|++++. +++++.   |+.|++||+++++.+..+.+|...|.+++|+|+++++++++.|+
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~  206 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEEC---CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence                4566788999999999998775 778888   99999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCCcee
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~  273 (351)
                      .|++||+++++....+. .|...|.+++|+|++++|++|+.||.|++||+++++.+..       ..+..++|+|+|..+
T Consensus       207 ~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          207 SAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             CEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            99999999999888875 5678999999999999999999999999999998876654       246789999999999


Q ss_pred             eeeeccceeeEEEeeecee--------CceEEEeeEEEEecCCceeeccEEEecCCccccc
Q psy519          274 ATLAANSRVRTLREMHEIV--------GPVVVVESFIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      ++++.++.   +++|+...        ||...+.+  +.|+|++.+.... ..|..+++|+
T Consensus       286 ~~g~~d~~---i~vwd~~~~~~~~~~~~h~~~v~~--~~~s~dg~~l~s~-s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFN---CNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATG-SWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSE---EEEEETTTCCEEEEEECCSSCEEE--EEECTTSSCEEEE-ETTSCEEEEC
T ss_pred             EEECCCCe---EEEEEcccCcEeeEeecCCCcEEE--EEEcCCCCEEEEE-cCCccEEecC
Confidence            99998875   55555433        34444444  7899999877654 5778888885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-41  Score=291.39  Aligned_cols=280  Identities=24%  Similarity=0.311  Sum_probs=244.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTA   73 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i   73 (351)
                      ..++||.+.|++++|+|+. +++|++|+.|++|++|++...          +.+|...|.+++|+|++.+ ++++.|+.|
T Consensus        32 ~tL~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEECCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEECCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3467999999999999971 579999999999999998764          5789999999999999988 999999999


Q ss_pred             EEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-EEeccCCCCeEEEEEccCC--CEEEE
Q psy519           74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFSPCG--KYLAS  150 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~~  150 (351)
                      ++|+............+...+....+++++++|++++.|+.+++||+...... ....+|...+.+++|++++  .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999999988888888999999999999999999999999999998765543 3456788999999999864  56788


Q ss_pred             EecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                      ++.   |+.|++||+++++.+..+.+|..+|.+++|+|++++|++++.||.|++||+++.+.+..+.  +...+..++|+
T Consensus       191 ~~~---d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~  265 (340)
T 4aow_A          191 CGW---DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINALCFS  265 (340)
T ss_dssp             EET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEEEEEC
T ss_pred             EcC---CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEeeecC
Confidence            888   9999999999999999999999999999999999999999999999999999999888764  45789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee--------------eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI--------------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      |++.++ +++.|+.|++||++++..+..              ..+..++|+|+|..+++++.|+   .+++|+..+|.
T Consensus       266 ~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg---~v~iW~~~tGt  339 (340)
T 4aow_A          266 PNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN---LVRVWQVTIGT  339 (340)
T ss_dssp             SSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS---CEEEEEEEC--
T ss_pred             CCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEeCCCcC
Confidence            988755 455699999999998765532              3567799999999999988887   57788877774

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.8e-42  Score=321.45  Aligned_cols=275  Identities=23%  Similarity=0.309  Sum_probs=240.6

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEE
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTAR   74 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~   74 (351)
                      ...+|...|.+++|+|+. +++|++|+.|++|++|++...          +.+|...|.+++|+|++.+ ++|+.|++|+
T Consensus       377 ~l~~H~~~V~~v~~~~~~-~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDN-ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEECCSSCEEEEECCTTC-CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hcccCCceeEEEEecCCC-CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            356899999999999971 479999999999999998753          5689999999999999988 9999999999


Q ss_pred             EEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEEccCC--CEEE
Q psy519           75 LWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSPCG--KYLA  149 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~--~~l~  149 (351)
                      +||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+.........   .+|...|.+++|+|++  ..++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            9999999999999999999999999999999999999999999998755433332   4588899999999986  5799


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEE
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  229 (351)
                      +++.   |+.|++||+++++....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+  .+...+.+++|
T Consensus       536 s~s~---d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~  610 (694)
T 3dm0_A          536 SASW---DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCF  610 (694)
T ss_dssp             EEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--BCSSCEEEEEE
T ss_pred             EEeC---CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--cCCCcEEEEEE
Confidence            9998   999999999999999999999999999999999999999999999999999999887665  45678999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeeee------------------------ecceeEEecCCceeeeeeccceeeEE
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASKIGIG------------------------VYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~------------------------~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      +|++.+|++++ ++.|++||+++++.+...                        .+.+++|+|+|..+++++.++.   +
T Consensus       611 sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~---i  686 (694)
T 3dm0_A          611 SPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV---I  686 (694)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE---E
T ss_pred             cCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe---E
Confidence            99999888775 567999999998766432                        1456889999999999888874   5


Q ss_pred             Eeeec
Q psy519          286 REMHE  290 (351)
Q Consensus       286 ~~~~~  290 (351)
                      ++|+.
T Consensus       687 ~iW~i  691 (694)
T 3dm0_A          687 RVWGI  691 (694)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            55553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-41  Score=292.21  Aligned_cols=308  Identities=17%  Similarity=0.192  Sum_probs=260.8

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      -+..+|.+++|+|+  |++++++..++.+..|.....     ..+|...|.+++|+|++++ ++++ |+.|++|++.+++
T Consensus         7 ~~~~~v~~~~~s~d--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            7 MGSKPAYSFHVTAD--GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEEECCEEEECSS--SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred             ccCCceeEEEECCC--CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence            35678999999999  999999888887777765554     5579999999999999998 6666 9999999998765


Q ss_pred             ee---EEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           83 PL---RIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        83 ~~---~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ..   ..+.  .|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...+.+++|+|+++++++++.  
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  161 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--  161 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--
Confidence            33   3333  788999999999999999999999999999999877  56667788999999999999999999998  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCE
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  235 (351)
                       |+.|++||+++++.+..+..|...+.+++|+|+++++++++.||.|++||+++++.+..+  .+...+.+++|+|++++
T Consensus       162 -dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          162 -DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             -TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSE
T ss_pred             -CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--cCCCceEEEEECCCCCE
Confidence             999999999999999999999999999999999999999999999999999999888776  45678999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee-----EEEEec
Q psy519          236 LVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES-----FIVEIR  306 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~  306 (351)
                      |++++.|+.|++||+.+++....    ..+..++|+|++..+++++.++   .+++|+..+++......     ..+.|+
T Consensus       239 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~~~~~v~~~~~s  315 (337)
T 1gxr_A          239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDIS  315 (337)
T ss_dssp             EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCC---cEEEEECCCCeEEEEecCCCcEEEEEEC
Confidence            99999999999999998876543    4567899999999999888877   56777776665443221     125789


Q ss_pred             CCceeeccEEEecCCcccccee
Q psy519          307 PDKWYEANLIVLDDDLKECNLE  328 (351)
Q Consensus       307 ~~~~~~~~~~~~~~~i~~~~~~  328 (351)
                      |++.+.... ..+..++.|++.
T Consensus       316 ~~~~~l~~~-~~dg~i~iw~~~  336 (337)
T 1gxr_A          316 VDDKYIVTG-SGDKKATVYEVI  336 (337)
T ss_dssp             TTSCEEEEE-ETTSCEEEEEEE
T ss_pred             CCCCEEEEe-cCCCeEEEEEEe
Confidence            998876543 467778888763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5e-41  Score=287.10  Aligned_cols=273  Identities=22%  Similarity=0.298  Sum_probs=235.0

Q ss_pred             cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCC-----CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy519           46 TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQ-----MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  118 (351)
                      +.+|.+.|++++|+|++ .+ ++++.|++|++|++..     +.++..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            67899999999999965 55 9999999999999864     34567889999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCC------CcE
Q psy519          119 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC------GKY  192 (351)
Q Consensus       119 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~  192 (351)
                      |+.+++.+..+.+|...|.+++|+|+++++++++.   |+.|++||++ ++.+..+.+|...+.++.|+|.      +..
T Consensus        93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred             ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence            99999999999999999999999999999999999   9999999986 5677788899999999999984      458


Q ss_pred             EEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEec
Q psy519          193 LASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQP  268 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~  268 (351)
                      +++++.|+.|++||+++.+....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+..    ..+..++|+|
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp  247 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP  247 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS
T ss_pred             EEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC
Confidence            9999999999999999988877765 6778999999999999999999999999999999887654    4567899999


Q ss_pred             CCceeeeeeccceeeEEEeeeceeCceE----------------EEeeEEEEecCCceeeccEEEecCCccccceeee
Q psy519          269 VGFEAATLAANSRVRTLREMHEIVGPVV----------------VVESFIVEIRPDKWYEANLIVLDDDLKECNLETY  330 (351)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  330 (351)
                      ++..++++..++    +++|+...+...                .+.+  +.|+|++.++... ..+..++.|++.+.
T Consensus       248 ~~~~la~~~~~~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~spdg~~l~sg-~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          248 NRYWLAAATATG----IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS--LAWSADGQTLFAG-YTDNVIRVWQVMTA  318 (319)
T ss_dssp             SSSEEEEEETTE----EEEEEETTEEEEEEECCCCTTCCGGGCCCEEE--EEECTTSSEEEEE-ETTSCEEEEEEEEC
T ss_pred             CCCEEEEEcCCC----cEEEEeCcCeeeeccCccccccccCcCcceeE--EEECCCCCEEEEe-ecCceEEEEEEeec
Confidence            999988776553    455554332211                1223  7899999987654 67888999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-42  Score=306.80  Aligned_cols=309  Identities=12%  Similarity=0.144  Sum_probs=258.1

Q ss_pred             CccceEEeeecCCcccc-EEEEe----------cCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC
Q psy519           10 DHKHFIQNSFKPETVED-VLANL----------ESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD   70 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~-~l~~~----------~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d   70 (351)
                      +..+|.+++|+|+  ++ +|+++          +.|+.|++|++...       ...|...|.+++|+|++.+ ++++.|
T Consensus        11 ~~~~v~~~~~sp~--g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   88 (416)
T 2pm9_A           11 EFSRTATFAWSHD--KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN   88 (416)
T ss_dssp             EEEESCBCCBCSS--SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred             hhhhcceEeeCCC--CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC
Confidence            4568899999999  87 89999          88999999999865       3468899999999999987 899999


Q ss_pred             CcEEEEeCCC----CeeeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCc------eeE---EeccCCCCe
Q psy519           71 TTARLWSLEQ----MYPLRIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGA------SVR---VFSDHVSPV  136 (351)
Q Consensus        71 ~~i~vw~~~~----~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~---~~~~~~~~i  136 (351)
                      +.|++|++.+    .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++      ...   .+..|...|
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            9999999987    4577888899999999999998 8999999999999999999876      332   235688999


Q ss_pred             EEEEEccC-CCEEEEEecCCCCCeEEEEEccCCceeEEeccC------CCCEEEEEECCCC-cEEEEEcCCC---eEEEE
Q psy519          137 LSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSDH------VSPVLSIAFSPCG-KYLASGGEDG---LVLTH  205 (351)
Q Consensus       137 ~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~  205 (351)
                      .+++|+|+ +.++++++.   |+.|++||+++++.+..+..+      ...+.+++|+|++ .++++++.|+   .|++|
T Consensus       169 ~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGS---SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CEEEECSSCTTEEEEESS---SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             eEEEeCCCCCcEEEEEcC---CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            99999998 789999988   999999999999988888776      7899999999987 6899999998   99999


Q ss_pred             EcCCC-cEEEEeeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCC-ceeeeee
Q psy519          206 ELTTG-RVISRFHLQEHEPVTSLVWSV-TGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVG-FEAATLA  277 (351)
Q Consensus       206 d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~-~~~~~~~  277 (351)
                      |++++ .....+...|...|.+++|+| ++++|++++.||.|++||+.+++.+..     ..+..++|+|++ ..+++++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            99986 444444324678999999999 999999999999999999999887764     456789999999 7888888


Q ss_pred             ccceeeEEEeeeceeCceE-------------------------------------------EEeeEEEEecCCceeecc
Q psy519          278 ANSRVRTLREMHEIVGPVV-------------------------------------------VVESFIVEIRPDKWYEAN  314 (351)
Q Consensus       278 ~~~~~~~~~~~~~~~g~~~-------------------------------------------~~~~~~~~~~~~~~~~~~  314 (351)
                      .++.   +++|+...+...                                           .+.  ...|+|++.++..
T Consensus       326 ~d~~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~la~  400 (416)
T 2pm9_A          326 FDNK---IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSP--AAHWAFGGKLVQI  400 (416)
T ss_dssp             SSSE---EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSC--CCEEETTTEEECB
T ss_pred             cCCc---EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCcc--ceEEeeCCeEEEE
Confidence            8775   555555433211                                           111  2578899888765


Q ss_pred             EEEecCCccccceee
Q psy519          315 LIVLDDDLKECNLET  329 (351)
Q Consensus       315 ~~~~~~~i~~~~~~~  329 (351)
                      . ..+..+++|++.+
T Consensus       401 ~-~~d~~v~~w~~~~  414 (416)
T 2pm9_A          401 T-PDGKGVSITNPKI  414 (416)
T ss_dssp             C-TTSSCBCCBCCCC
T ss_pred             e-CCCCeEEEEEecc
Confidence            4 3577899998865

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-40  Score=306.03  Aligned_cols=305  Identities=25%  Similarity=0.377  Sum_probs=262.6

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ..+|...|.+++|+|+  +++|++++.|+.|++|+....    +.+|...|.+++|+|++.. ++++.|+.|++|+.. +
T Consensus       217 ~~~~~~~v~~~~~s~d--g~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~  293 (577)
T 2ymu_A          217 LTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-G  293 (577)
T ss_dssp             EECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred             EecCCCCEEEEEECCC--CCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C
Confidence            4578899999999999  999999999999999998765    6789999999999999987 999999999999965 5


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +....+.+|...|.+++|+|+++.+++++.|+.|++||+. ++.+..+..|...+.+++|+|+++++++++.   |+.|+
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~  369 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVK  369 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeC---CCEEE
Confidence            6778888999999999999999999999999999999976 4556777889999999999999999999998   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+. .|...|.+++|+|++++|++++.
T Consensus       370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcC
Confidence            9995 67888889999999999999999999999999999999996 567777665 57789999999999999999999


Q ss_pred             CCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec-------eeCceEEEeeEEEEecCCc
Q psy519          242 TGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE-------IVGPVVVVESFIVEIRPDK  309 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~  309 (351)
                      |+.|++||... +.+..     ..+..++|+|++..+++++.++.   +++|+.       ..++...+.+  +.|+|++
T Consensus       447 d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~---i~iw~~~~~~~~~~~~h~~~v~~--l~~s~dg  520 (577)
T 2ymu_A          447 DKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT---VKLWNRNGQLLQTLTGHSSSVRG--VAFSPDG  520 (577)
T ss_dssp             TSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSE---EEEEETTSCEEEEEECCSSCEEE--EEECTTS
T ss_pred             CCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE---EEEEcCCCCEEEEEeCCCCCEEE--EEEcCCC
Confidence            99999999754 43332     45678999999999999988875   455553       2233333444  7899999


Q ss_pred             eeeccEEEecCCcccccee
Q psy519          310 WYEANLIVLDDDLKECNLE  328 (351)
Q Consensus       310 ~~~~~~~~~~~~i~~~~~~  328 (351)
                      .++... ..+..++.|+..
T Consensus       521 ~~l~s~-~~dg~v~lwd~~  538 (577)
T 2ymu_A          521 QTIASA-SDDKTVKLWNRN  538 (577)
T ss_dssp             SCEEEE-ETTSEEEEECTT
T ss_pred             CEEEEE-ECcCEEEEEeCC
Confidence            987654 567789999853

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-40  Score=288.28  Aligned_cols=277  Identities=19%  Similarity=0.278  Sum_probs=247.5

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|...|.+++|+|+  +++|++++.||.|++|++...     +.+|...|.+++|+|++.+ ++++.|+.|++||+.+
T Consensus        28 l~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            4689999999999999  999999999999999999877     7789999999999999987 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCc-----------eeEEeccCCC--CeEEEEEc
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGA-----------SVRVFSDHVS--PVLSIAFS  142 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~i~~~~~~  142 (351)
                      ++.+..+. +...+.+++|+|+++++++++.+     +.|++||+....           ....+..+..  .+.+++|+
T Consensus       106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            99988887 88899999999999999999998     999999997654           2334444555  89999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccC-CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      |+++++++++.   |+.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.  +.
T Consensus       185 ~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~  259 (369)
T 3zwl_B          185 TKGKYIIAGHK---DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TD  259 (369)
T ss_dssp             GGGCEEEEEET---TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS
T ss_pred             CCCCEEEEEcC---CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CC
Confidence            99999999998   99999999998 78888888999999999999999999999999999999999999888875  56


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC--------------eEEEEeCCCCceeee-----eecceeEEecCCceeeeeecccee
Q psy519          222 EPVTSLVWSVTGETLVTGSLTG--------------TVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                      ..+..++|+|+++++++++.++              .+++||..+++.+..     ..+..++|+|++..+++++.++. 
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-  338 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF-  338 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe-
Confidence            7899999999999999999988              899999999887754     55678999999999999988874 


Q ss_pred             eEEEeeeceeCc
Q psy519          283 RTLREMHEIVGP  294 (351)
Q Consensus       283 ~~~~~~~~~~g~  294 (351)
                        +++|+...+.
T Consensus       339 --v~iw~~~~~~  348 (369)
T 3zwl_B          339 --IRLHHFEKSY  348 (369)
T ss_dssp             --EEEEEECHHH
T ss_pred             --EEEEECcccc
Confidence              5666655443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.8e-41  Score=284.34  Aligned_cols=243  Identities=18%  Similarity=0.271  Sum_probs=210.5

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCC--CcE-EEEeCCCcEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSK--GLA-LTGSRDTTAR   74 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~--~~~-~~~~~d~~i~   74 (351)
                      .+..+|...|.+++|+|+  |++||+++.|++|++|++...       +.+|.++|++++|+++  +.+ ++++.|++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             EECCSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eeccCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            356789999999999999  999999999999999998642       6789999999999864  666 9999999999


Q ss_pred             EEeCCCCe--eeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEccC----
Q psy519           75 LWSLEQMY--PLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPC----  144 (351)
Q Consensus        75 vw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~----  144 (351)
                      +||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.+++|+|+    
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998774  55667889999999999997  8899999999999999998763  24566789999999999997    


Q ss_pred             ---------CCEEEEEecCCCCCeEEEEEccCCc----eeEEeccCCCCEEEEEECCCC---cEEEEEcCCCeEEEEEcC
Q psy519          145 ---------GKYLASGGTGSYDKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPCG---KYLASGGEDGLVLTHELT  208 (351)
Q Consensus       145 ---------~~~l~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~  208 (351)
                               +++|++++.   |+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|+.|++||++
T Consensus       161 ~~~~~~~~~~~~l~sgs~---D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcC---CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     579999999   9999999998876    566788999999999999984   899999999999999998


Q ss_pred             CCc--EE-EEee-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          209 TGR--VI-SRFH-LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       209 ~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +..  .. ..+. ..+...|.+++|+|++++|++++.||.|++|+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            743  11 2221 23457899999999999999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-41  Score=300.88  Aligned_cols=269  Identities=17%  Similarity=0.183  Sum_probs=230.1

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      +.+++|+|+  +++|++++.|+.+++|++...     ...| ..+....|++++.+ ++++.|+.|++||+++++....+
T Consensus        59 ~~~~~~s~~--g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           59 GKGNTFEKV--GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CTTCEEEEE--ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             ccceeeeec--CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            457899999  999999999999999999876     3334 44555578999987 99999999999999999988888


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.   |+.|++||+++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~  212 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL---DGTIRLWECGT  212 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEETTT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC---CCcEEEeECCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             CceeEEecc---CCCCEE---------------------EEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          168 GASVRVFSD---HVSPVL---------------------SIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       168 ~~~~~~~~~---~~~~i~---------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      ++.+..+..   +...+.                     +++|+|++++|++++.||.|++||+++++.+..+...+...
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            998888864   333444                     45568899999999999999999999999888886667789


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eee-----eecceeEEecCCceeeeeeccceeeEEEeeece
Q psy519          224 VTSLVWSVTGE-TLVTGSLTGTVQFYGWPSASK-IGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       224 v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~-~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                      +.+++|+|+++ +|++|+.||.|++||+++++. +..     .......++|++..+++++.++.   +++|+..
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~---v~iw~~~  364 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTS---IKLDIIS  364 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEE---EEEEEEC
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCcc---EEEEecc
Confidence            99999999999 999999999999999998753 322     12223346678888888887775   5555543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-41  Score=296.08  Aligned_cols=306  Identities=13%  Similarity=0.166  Sum_probs=258.8

Q ss_pred             CCCccceEEeeecCCcccc-EEEEecCCCceEEEec----CCcc-----------C----------CCccceEEEEECCC
Q psy519            8 HGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYL----PYYT-----------S----------GHDMTVWSVEACSK   61 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~----~~~~-----------~----------~~~~~i~~~~~~~~   61 (351)
                      +.|..+|.+++|+|+  ++ +||+++.|+.|++|++    ....           .          +|...|.+++|+|+
T Consensus        42 ~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            345689999999999  99 9999999999999999    4331           1          26789999999999


Q ss_pred             CcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCC-----
Q psy519           62 GLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP-----  135 (351)
Q Consensus        62 ~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----  135 (351)
                      +.+ ++++.|+.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+...     
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            988 9999999999999 667888889999999999999999999999999999999999999998888777666     


Q ss_pred             ----------eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEE
Q psy519          136 ----------VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTH  205 (351)
Q Consensus       136 ----------i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  205 (351)
                                +.+++|+|++ .+++++.   ++.|++||+++++.+..+..|..++.+++|+|++++|++++.||.|++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDD-KFVIPGP---KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW  274 (425)
T ss_dssp             -------CCCBSCCEEEETT-EEEEECG---GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eccccCCcceeeEEEEcCCC-EEEEEcC---CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                      8999999975 5777777   9999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccc
Q psy519          206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       206 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      |+++++....+. .+...+.+++|+|++ ++++++.|+.|++||+.+++.+..     ..+..++|+|++..+++++.++
T Consensus       275 d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          275 HGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             CSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            999988887775 567899999999999 999999999999999999887754     4566899999999999999887


Q ss_pred             eeeEEEeeeceeCc--------------------e--------E--EEeeEEEEecCCceeeccEEEecCCcccccee
Q psy519          281 RVRTLREMHEIVGP--------------------V--------V--VVESFIVEIRPDKWYEANLIVLDDDLKECNLE  328 (351)
Q Consensus       281 ~~~~~~~~~~~~g~--------------------~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (351)
                      .+.   +|+...+.                    .        .  .+..  +.|+|++.++... ..+..+..|+++
T Consensus       353 ~i~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~-~~dg~i~iw~~~  424 (425)
T 1r5m_A          353 QVN---VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD--LSWNCAGNKISVA-YSLQEGSVVAIP  424 (425)
T ss_dssp             CEE---EEECHHHHC--------------CEECCEEEEECCTTCCCCEEE--EEECTTSSEEEEE-ESSSCCEEEECC
T ss_pred             eEE---EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE--EEccCCCceEEEE-ecCceEEEEeec
Confidence            554   45444333                    1        1  3333  6789998876544 577789988874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-41  Score=293.81  Aligned_cols=239  Identities=19%  Similarity=0.259  Sum_probs=208.2

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      .+|...|.+++|+|+  +.+| +++.||.|++||+...         ..+|...|++++|+|++++ ++++.|+.|++||
T Consensus        91 ~~~~~~V~~~~~s~d--~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           91 VQTEAGVTDVAWVSE--KGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EECSSCEEEEEEETT--TEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             CCCCCCEEEEEEcCC--CCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            357888999999999  8755 4668999999998775         3478999999999999987 9999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEe--ccCCCCeEEEEEccC-CCEEEEEec
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPC-GKYLASGGT  153 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~  153 (351)
                      +++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+  ..+...+.+++|+|+ +.+|++++.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999999999999999999999999875 7899999999999999998876654  346678999999997 467888888


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC-
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-  231 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-  231 (351)
                         |+.|++||+++++.+..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  .|...|++++|+| 
T Consensus       248 ---d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~  322 (357)
T 4g56_B          248 ---TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPL  322 (357)
T ss_dssp             ---SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSS
T ss_pred             ---ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCC
Confidence               9999999999999999999999999999999987 57899999999999999998877654  6778999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCc
Q psy519          232 TGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      ++++|++++.||+|++|++++..
T Consensus       323 d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          323 DHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             STTEEEEEETTSCEEEEECC---
T ss_pred             CCCEEEEEcCCCeEEEEECCCCC
Confidence            79999999999999999997643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-40  Score=287.67  Aligned_cols=271  Identities=17%  Similarity=0.267  Sum_probs=236.7

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-  123 (351)
                      +.+|...|++++|+|++.+ ++|+.|++|++||..+++....+..|...|.+++|+|++..+++++.|+.+++|++... 
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            6789999999999999987 99999999999999999988889899999999999999999999999999999998643 


Q ss_pred             -----ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC--CCcEEEEE
Q psy519          124 -----ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP--CGKYLASG  196 (351)
Q Consensus       124 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~  196 (351)
                           .....+..|...|.+++|+|++..|++++.   |+.|++||+++++.+..+.+|...+.+++|+|  ++++|++|
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG---DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence                 345666789999999999999999999999   99999999999999999999999999999988  56899999


Q ss_pred             cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecC
Q psy519          197 GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPV  269 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~  269 (351)
                      +.||.|++||+++++.+..+. .|...|.+++|+|++++|++++.|+.|++||++.++.+..       ..+..++|+|+
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~  295 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS  295 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             eCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence            999999999999999888875 5678999999999999999999999999999998876543       23457899999


Q ss_pred             CceeeeeeccceeeEEEeeeceeC--------ceEEEeeEEEEecCCceeeccEEEecCCccccc
Q psy519          270 GFEAATLAANSRVRTLREMHEIVG--------PVVVVESFIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      +..+++++.++.   +++|+..++        |...+.+  +.|+|++.++... ..|..++.|+
T Consensus       296 g~~l~~g~~d~~---i~vwd~~~~~~~~~l~~h~~~v~~--l~~spdg~~l~sg-s~D~~v~vW~  354 (354)
T 2pbi_B          296 GRLLFAGYNDYT---INVWDVLKGSRVSILFGHENRVST--LRVSPDGTAFCSG-SWDHTLRVWA  354 (354)
T ss_dssp             SSEEEEEETTSC---EEEEETTTCSEEEEECCCSSCEEE--EEECTTSSCEEEE-ETTSEEEEEC
T ss_pred             CCEEEEEECCCc---EEEEECCCCceEEEEECCCCcEEE--EEECCCCCEEEEE-cCCCCEEecC
Confidence            999999988875   555665444        3344444  7899999887654 5677787774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.8e-40  Score=279.28  Aligned_cols=276  Identities=18%  Similarity=0.316  Sum_probs=237.3

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|...|++++|+|++++ ++++.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            5689999999999999987 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      .+..+.+|...|.+++|+|+++++++++.   |+.|++||+++++.+..+..|..++.+++|+|++++|++++.||.|++
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  175 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  175 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            99999999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-------ceeEEe-cCCceeeee
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY-------PRCAAQ-PVGFEAATL  276 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-------~~~~~s-~~~~~~~~~  276 (351)
                      ||+++++.+..+...+...+..++|+|++++|++++.||.|++||+.+++.+.....       ....++ +++..++++
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence            999999988877655667899999999999999999999999999999887765221       123344 567778888


Q ss_pred             eccceeeEEEeeeceeCceEEEee------EEEEecCCceeeccEEE-ecCCccccce
Q psy519          277 AANSRVRTLREMHEIVGPVVVVES------FIVEIRPDKWYEANLIV-LDDDLKECNL  327 (351)
Q Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~i~~~~~  327 (351)
                      +.++   .+++|+..+++......      ..+.++|++.+....-. .+..++.|+.
T Consensus       256 ~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          256 SEDN---LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CTTS---CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CCCC---EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            7776   45667665554332211      12688999887654421 3677888864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-41  Score=288.74  Aligned_cols=285  Identities=20%  Similarity=0.261  Sum_probs=227.3

Q ss_pred             cCCCcc-ceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE---EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDM-TVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR---IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~-~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|.. .|++++|+|+|.+ ++|+.|++|++||+++++...   ...+|...|.+++|+|++++|++++.|+.+++||+
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK   90 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence            457877 9999999999987 999999999999998876432   23689999999999999999999999999999998


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc---eeEEeccCCCCEEEEEECCCCcEEEE
Q psy519          121 TDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       121 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~  195 (351)
                      ..+.  .+..+.+|...|.+++|+|++++|++++.   |+.|++||++++.   .+..+..|...|.+++|+|++++|++
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            8764  56788899999999999999999999999   9999999998764   45667789999999999999999999


Q ss_pred             EcCCCeEEEEEcCCCcEE--EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------ee--
Q psy519          196 GGEDGLVLTHELTTGRVI--SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS---------------KI--  256 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---------------~~--  256 (351)
                      ++.|+.|++||.++++..  ..+. .|...|.+++|+|++++|++++.|+.|++|+.....               .+  
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT  246 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence            999999999999887643  3343 566899999999999999999999999999963221               11  


Q ss_pred             ----eeeecceeEEecCCceeeeeeccceeeEEEeeec--------------eeCceEEEeeEEEEecCCce-eeccEEE
Q psy519          257 ----GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHE--------------IVGPVVVVESFIVEIRPDKW-YEANLIV  317 (351)
Q Consensus       257 ----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~~-~~~~~~~  317 (351)
                          +...+..++|+|++..+++++.++.++.+..-..              ..+|...+.+  +.|+|++. ++... .
T Consensus       247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~--v~~~p~~~~~laS~-s  323 (345)
T 3fm0_A          247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC--VAWNPKEPGLLASC-S  323 (345)
T ss_dssp             ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEE--EEECSSSTTEEEEE-E
T ss_pred             ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeE--eEEeCCCceEEEEc-C
Confidence                2235678999999999999999886555443111              1244445555  78999875 44333 6


Q ss_pred             ecCCccccceeeeeeeeecC
Q psy519          318 LDDDLKECNLETYSQMIPVP  337 (351)
Q Consensus       318 ~~~~i~~~~~~~~~~~~~~~  337 (351)
                      .|..++.|++.......+.|
T Consensus       324 ~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          324 DDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             TTSCEEEEEECC--------
T ss_pred             CCCcEEEEEecCCCCccccc
Confidence            78899999998766554443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.5e-41  Score=294.54  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=241.7

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCC----C---cE-E
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSK----G---LA-L   65 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~----~---~~-~   65 (351)
                      ....+|...|.+++|+|    ++|++++.||.|++|++...           +.+|...|.+++|+|+    +   .+ +
T Consensus        10 ~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            45678999999999987    58999999999999999864           5678999999999999    8   66 9


Q ss_pred             EEeCCCcEEEEeCCCCee-----eEEeeCC-----CCCeEEEEEe----CCCCE-EEEEeCCCcEEEEeCCC------Cc
Q psy519           66 TGSRDTTARLWSLEQMYP-----LRIFVGH-----KQDVTCARFH----PKITY-IGTGSYDKAVRLWSITD------GA  124 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~  124 (351)
                      +++.|+.|++|++.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+++      ++
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999998876     7888888     5899999999    99999 99999999999999998      66


Q ss_pred             eeE-----Ee-------ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc---C---CCCEEEEEE
Q psy519          125 SVR-----VF-------SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD---H---VSPVLSIAF  186 (351)
Q Consensus       125 ~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~---~~~i~~~~~  186 (351)
                      .+.     .+       ..|...+.+++|+|++ ++++++.   |+.|++||+++++.+..+..   |   ..++.+++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---CCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            665     66       4478899999999999 9999998   99999999999999999988   8   999999999


Q ss_pred             CCCCcEEEEEcCC---CeEEEEEcCCCcEEEEeecc------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          187 SPCGKYLASGGED---GLVLTHELTTGRVISRFHLQ------------EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       187 ~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +|++++|++++.|   |.|++||+++++.+..+...            +...|.+++|+|++++|++++.||.|++||+.
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999   99999999999988887631            67899999999999999999999999999999


Q ss_pred             CCceeeeee--------------------------cceeEEecCC----------ceeeeeeccceeeEEEeeeceeC
Q psy519          252 SASKIGIGV--------------------------YPRCAAQPVG----------FEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       252 ~~~~~~~~~--------------------------~~~~~~s~~~----------~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +++.+....                          +..++|+|++          ..+++++.++   .+++|+..+|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~g  396 (397)
T 1sq9_A          322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR---SIRWFREAGG  396 (397)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT---EEEEEEEEC-
T ss_pred             CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC---cEEEEEcCCC
Confidence            987765443                          4578999998          6788888777   5667766554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-41  Score=293.88  Aligned_cols=277  Identities=15%  Similarity=0.212  Sum_probs=236.3

Q ss_pred             CcCCCCccceEEeeecCC--ccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCC----CcE-EEE
Q psy519            5 HLNHGDHKHFIQNSFKPE--TVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSK----GLA-LTG   67 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~--~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~----~~~-~~~   67 (351)
                      .+..+|..+|.+++|+|+  +....+++++.++.|++|++...          ...|...|.+++|+|+    +.+ +++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            456789999999999982  11456666677779999999865          2236688999999999    555 999


Q ss_pred             eCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEEcc
Q psy519           68 SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSP  143 (351)
Q Consensus        68 ~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~  143 (351)
                      +.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+   ..|...|.+++|+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            9999999999999999999999999999999999 8999999999999999999999988888   67999999999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEEec----------------------------cCCCCEEEEEECCCCcEEEE
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS----------------------------DHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~  195 (351)
                      ++++|++++.   |+.|++||+++++....+.                            .|...|.+++|+  ++++++
T Consensus       172 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~  246 (366)
T 3k26_A          172 LGEKIMSCGM---DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS  246 (366)
T ss_dssp             TSSEEEEEET---TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred             CCCEEEEecC---CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence            9999999999   9999999998765443332                            388999999998  779999


Q ss_pred             EcCCCeEEEEEcCCCcE--------------EEEeeccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceee--
Q psy519          196 GGEDGLVLTHELTTGRV--------------ISRFHLQEHEPVTSLVWSVT--GETLVTGSLTGTVQFYGWPSASKIG--  257 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~--  257 (351)
                      ++.|+.|++||+++++.              +..+. .+...|.+++|+|+  +++|++++.||.|++||+.+++...  
T Consensus       247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             EecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            99999999999987643              44443 45678999999999  9999999999999999999875321  


Q ss_pred             ---------eeecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          258 ---------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       258 ---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                               ...+..++|+|++..+++++.++.   +++|+.
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iwd~  364 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS---IWRWDR  364 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSE---EEEEEC
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEEEEeCCCE---EEEEEe
Confidence                     245678999999999999998885   555553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4e-40  Score=288.76  Aligned_cols=272  Identities=12%  Similarity=0.094  Sum_probs=228.4

Q ss_pred             cCCCCccceEEeeecCCccc-cEEEEecCCCceEEEecCCc-------cCCCccceEEEEECC-CCcE-EEEeCCCcEEE
Q psy519            6 LNHGDHKHFIQNSFKPETVE-DVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACS-KGLA-LTGSRDTTARL   75 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~-~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~v   75 (351)
                      ...+|...|.+++|+|+  + ++|++++.||.|++|++...       ..+|...|.+++|+| ++.+ ++++.|+.|++
T Consensus        68 ~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EECCCSSCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             eccCCCCCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            34689999999999999  8 99999999999999999876       347999999999999 5566 99999999999


Q ss_pred             EeCCCCeeeEEeeCC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEEE
Q psy519           76 WSLEQMYPLRIFVGH---KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASG  151 (351)
Q Consensus        76 w~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  151 (351)
                      ||+++ +....+..+   ...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ +++++
T Consensus       146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            99996 445555443   478999999999999999999999999999 5778888889999999999999999 89999


Q ss_pred             ecCCCCCeEEEEEccC----CceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC------
Q psy519          152 GTGSYDKAVRLWSITD----GASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQE------  220 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------  220 (351)
                      +.   |+.|++||+++    +..+..+ .|...+.+++|+| ++++|++++.|+.|++||+++++....+....      
T Consensus       224 ~~---d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          224 SV---DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             ET---TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             eC---CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            98   99999999998    5566666 6899999999999 99999999999999999999887665554211      


Q ss_pred             ----------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-------ecceeEEecCCceeeeeeccceee
Q psy519          221 ----------HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG-------VYPRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       221 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                                ...+..++|+|++++  +++.||.|++||+.+++.+...       .+..++|+|++..+++++ ++   
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~---  373 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF---  373 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT---
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC---
Confidence                      123445666676666  7778999999999999877653       233459999999998885 54   


Q ss_pred             EEEeeece
Q psy519          284 TLREMHEI  291 (351)
Q Consensus       284 ~~~~~~~~  291 (351)
                      .+++|+..
T Consensus       374 ~i~iw~~~  381 (383)
T 3ei3_B          374 NILIWNRE  381 (383)
T ss_dssp             EEEEEECC
T ss_pred             cEEEEecC
Confidence            57777754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-41  Score=298.89  Aligned_cols=276  Identities=11%  Similarity=0.160  Sum_probs=240.5

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCC----c-----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY----Y-----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLW   76 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~----~-----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw   76 (351)
                      ..|...|.+++|+|+  +++|++++.||.|++|++..    .     +.+|...|.+++|+|+ +.+ ++++.|+.|++|
T Consensus        64 ~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHN--NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCCSSCEEEEEECSS--SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             EecCCceEEEEECCC--CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            458899999999999  99999999999999999987    1     6789999999999998 666 999999999999


Q ss_pred             eCCCCe------eeE---EeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEeccC------CCCeEEEE
Q psy519           77 SLEQMY------PLR---IFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGASVRVFSDH------VSPVLSIA  140 (351)
Q Consensus        77 ~~~~~~------~~~---~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~  140 (351)
                      |+.+++      ...   .+..|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+..+      ...+.+++
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence            999876      332   23678899999999998 789999999999999999999988888766      78999999


Q ss_pred             EccCC-CEEEEEecCCCCC---eEEEEEccCC-ceeEEec-cCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          141 FSPCG-KYLASGGTGSYDK---AVRLWSITDG-ASVRVFS-DHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       141 ~~~~~-~~l~~~~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      |+|++ .++++++.   |+   .|++||++++ ..+..+. .|...|.+++|+| ++++|++++.||.|++||+++++.+
T Consensus       222 ~~~~~~~~l~~~~~---d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          222 WHPKNSTRVATATG---SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             ECSSCTTEEEEEEC---CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ECCCCCCEEEEEEC---CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            99997 68888887   87   9999999986 5667777 8999999999999 9999999999999999999999998


Q ss_pred             EEeeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceee-----------------------------------
Q psy519          214 SRFHLQEHEPVTSLVWSVTG-ETLVTGSLTGTVQFYGWPSASKIG-----------------------------------  257 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~-----------------------------------  257 (351)
                      ..+. .|...|.+++|+|++ .+|++++.||.|++|++.+.+...                                   
T Consensus       299 ~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (416)
T 2pm9_A          299 SQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ  377 (416)
T ss_dssp             EEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred             eeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence            8886 567889999999998 899999999999999998765321                                   


Q ss_pred             -----eeecceeEEecCCceeeeeeccceeeEEEeeecee
Q psy519          258 -----IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       258 -----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                           ...+..++|+|+|+.++++..++   .+++|+..+
T Consensus       378 ~~~~~~~~~~~~~~s~dg~~la~~~~d~---~v~~w~~~~  414 (416)
T 2pm9_A          378 APTWYGEPSPAAHWAFGGKLVQITPDGK---GVSITNPKI  414 (416)
T ss_dssp             CCSTTCCCSCCCEEETTTEEECBCTTSS---CBCCBCCCC
T ss_pred             CCccccCCccceEEeeCCeEEEEeCCCC---eEEEEEecc
Confidence                 12345789999999999888776   466776544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-40  Score=283.19  Aligned_cols=238  Identities=26%  Similarity=0.403  Sum_probs=197.8

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      +|...|.+++|+|+  +++|++++.|+.|++|++...            +.+|...|.+++|+|++++ ++++.|++|++
T Consensus        56 ~h~~~v~~v~~sp~--~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i  133 (330)
T 2hes_X           56 AHKKAIRSVAWRPH--TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI  133 (330)
T ss_dssp             CCCSCEEEEEECTT--SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CccCCEEEEEECCC--CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence            39999999999999  999999999999999998421            5789999999999999987 99999999999


Q ss_pred             EeCCC----CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--ceeEEeccCCCCeEEEEEccC--CCE
Q psy519           76 WSLEQ----MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPC--GKY  147 (351)
Q Consensus        76 w~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~  147 (351)
                      ||+..    .+.+..+.+|...|.+++|+|++++|++++.|++|++||..++  +++..+.+|...|.+++|+|+  +..
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence            99943    2566778899999999999999999999999999999998776  577888999999999999998  678


Q ss_pred             EEEEecCCCCCeEEEEEccCC--------ceeEEecc-CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc--EEEEe
Q psy519          148 LASGGTGSYDKAVRLWSITDG--------ASVRVFSD-HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR--VISRF  216 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~  216 (351)
                      |++++.   |+.|++||++.+        .....+.. |...|.+++|++++ +|++++.||.|++||..+++  .....
T Consensus       214 l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          214 LCSGSD---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             EEEEET---TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEEEeC---CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence            999998   999999999764        33444544 88999999999765 78999999999999998774  23333


Q ss_pred             eccCCC-CEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q psy519          217 HLQEHE-PVTSLVWSV--TGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       217 ~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ...|.. .|.+++|+|  ++++|++|+.||.|++|+++.
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            234544 899999999  789999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-40  Score=315.54  Aligned_cols=279  Identities=18%  Similarity=0.241  Sum_probs=248.1

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ++.+...+|...|.+++|+|+  +++|++++.+|.|++|++.++     +.+|...|.+++|+|++.+ ++++.|+.|++
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~--~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPT--EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             ccceeeecCCCceEEEEECCC--CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            445667889999999999999  999999999999999999876     6789999999999999987 99999999999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEcc-CCCEEEEEec
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSP-CGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  153 (351)
                      ||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.+++++.
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999887 66778888999999999999 8899999998


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCC-CCEEEEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHV-SPVLSIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS  230 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  230 (351)
                         |+.|++||+++++....+..+. ..+..++|+|  ++.++++++.||.|++||+++++.+..+. .+...|.+++|+
T Consensus       162 ---dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~  237 (814)
T 3mkq_A          162 ---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFH  237 (814)
T ss_dssp             ---TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEC
T ss_pred             ---CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEc
Confidence               9999999999888777776554 8899999999  99999999999999999999999888775 567889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCcee-eeeeccceeeEEE
Q psy519          231 VTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEA-ATLAANSRVRTLR  286 (351)
Q Consensus       231 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~-~~~~~~~~~~~~~  286 (351)
                      |++++|++++.||.|++||+.+++....     ..+..++|+|++..+ ++.+.++....+.
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence            9999999999999999999999887765     455678999999753 4444455444443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.8e-41  Score=290.82  Aligned_cols=280  Identities=14%  Similarity=0.121  Sum_probs=230.4

Q ss_pred             CcCCCCccceEEeeecCCccccE-EEEecC---CCceEEEecCCc------cCCCccceEEEEECCC---CcE-EEEeCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDV-LANLES---QKNLQSRYLPYY------TSGHDMTVWSVEACSK---GLA-LTGSRD   70 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~-l~~~~~---~~~i~i~~~~~~------~~~~~~~i~~~~~~~~---~~~-~~~~~d   70 (351)
                      ++..+|...|.+++|+|+  ++. +++++.   |+.|++|++...      ..+|...|.+++|+|+   +.+ ++++.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~--~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPC--SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTT--SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCC--CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            455679999999999999  854 556665   899999999876      3478899999999998   455 999999


Q ss_pred             CcEEEEeCCCCe-eeEEeeCCCCCeEEEEE------eCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCC----CeEE
Q psy519           71 TTARLWSLEQMY-PLRIFVGHKQDVTCARF------HPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVS----PVLS  138 (351)
Q Consensus        71 ~~i~vw~~~~~~-~~~~~~~~~~~i~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~i~~  138 (351)
                      +.|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.||.|++||+++++ .+..+..+..    .+.+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            999999999888 88889999999999965      6789999999999999999999887 6777765544    8899


Q ss_pred             EE----EccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC---CCcEEEEEcCCCeEEEEEcCCCc
Q psy519          139 IA----FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP---CGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       139 ~~----~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      ++    |+|+++++++++.   |+.|++||+++++.... ..|...+.+++|+|   ++.++++++.||.|++||+++++
T Consensus       170 ~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYD---NGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEECCCC-CCCEEEEEET---TSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEeccCCCCCEEEEEcc---CCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            98    7889999999998   99999999999887544 56888999999999   99999999999999999998765


Q ss_pred             EEEEee----ccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee-------------------e-----eeecc
Q psy519          212 VISRFH----LQEHEPVTSLVWSVTGE-TLVTGSLTGTVQFYGWPSASKI-------------------G-----IGVYP  262 (351)
Q Consensus       212 ~~~~~~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~-------------------~-----~~~~~  262 (351)
                      ....+.    ..+...|.+++|+|+++ +|++++.||.|++||++.+...                   .     ...+.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            544332    25678999999999998 8999999999999999865322                   1     14566


Q ss_pred             eeEEecCCceee-eeeccceeeEEEeeeceeC
Q psy519          263 RCAAQPVGFEAA-TLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       263 ~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~g  293 (351)
                      .++|+|++..++ +++.++   .+++|+..+.
T Consensus       326 ~~~~s~~~~~l~~s~~~d~---~i~iw~~~~~  354 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQ---TVRVLIVTKL  354 (357)
T ss_dssp             EEEECSSSTTEEEEEETTS---EEEEEEECC-
T ss_pred             EEEEcCCCCeEEEEecCCC---cEEEEECCCc
Confidence            788899888887 566666   4566665443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.9e-40  Score=287.28  Aligned_cols=240  Identities=16%  Similarity=0.180  Sum_probs=215.6

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      +...|..+|.+++|+|+  +++|++++.++.|++|++...       +.+|...|.+++|+|++.+ ++++.|+.|++||
T Consensus         3 ~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EEESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eecccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            34558899999999999  999999999999999998775       5689999999999999987 9999999999999


Q ss_pred             CCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce----eEEeccCCCCeEEEEEccCCCEEEEE
Q psy519           78 LEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        78 ~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      +++++....  +..|...|.+++|+|++++|++++.|+.|++||++.++.    ......|...|.+++|+|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            988875443  367889999999999999999999999999999988763    23335688999999999999999999


Q ss_pred             ecCCCCCeEEEEEcc------------------CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          152 GTGSYDKAVRLWSIT------------------DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      +.   |+.|++||++                  .++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.+
T Consensus       161 ~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          161 SC---DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             ET---TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cC---CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            98   9999999954                  67788888899999999999999999999999999999999999998


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ..+. .+...+.+++|+|++++|+++ .|+.|++|++.+
T Consensus       238 ~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            8886 566789999999999988888 899999999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-39  Score=278.48  Aligned_cols=273  Identities=22%  Similarity=0.290  Sum_probs=225.2

Q ss_pred             cCCCccceEEEEE-----CC-CCcE-EEEeCCCcEEEEeCCCC-------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy519           46 TSGHDMTVWSVEA-----CS-KGLA-LTGSRDTTARLWSLEQM-------YPLRIFVGHKQDVTCARFHPKITYIGTGSY  111 (351)
Q Consensus        46 ~~~~~~~i~~~~~-----~~-~~~~-~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  111 (351)
                      +.+|...|++++|     ++ ++.+ ++|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.++++++.
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~   96 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW   96 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence            6789999999999     66 7777 99999999999998743       456678899999999999999999999999


Q ss_pred             CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec---cCCCCEEEEEECC
Q psy519          112 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS---DHVSPVLSIAFSP  188 (351)
Q Consensus       112 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~  188 (351)
                      |++|++||+++++.+..+.+|...|.+++|+|++++|++++.   |+.|++||+... ......   .|...+.+++|+|
T Consensus        97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEEEEeccCC-ceeeeecccCCCceeeeeeecc
Confidence            999999999999999999999999999999999999999999   999999999743 333333   6888999999999


Q ss_pred             CC----------cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceee
Q psy519          189 CG----------KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA-SKIG  257 (351)
Q Consensus       189 ~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~  257 (351)
                      ++          .+|++++.||.|++||. ..+....+. .|...|.+++|+|++++|++|+.||.|++||+... ....
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR  250 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            87          78999999999999994 455555554 57789999999999999999999999999999443 2222


Q ss_pred             ----eeecceeEEecCCceeeeeeccceeeEEEeeeceeCc---------------------eEEEeeEEEEecCCceee
Q psy519          258 ----IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP---------------------VVVVESFIVEIRPDKWYE  312 (351)
Q Consensus       258 ----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------------~~~~~~~~~~~~~~~~~~  312 (351)
                          ...+..++|+|++..++++ .++   .+++|+..++.                     ...+.+  +.|+|++.++
T Consensus       251 ~~~~~~~v~~v~~sp~~~~la~~-~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~sp~g~~l  324 (343)
T 2xzm_R          251 EFDAGSTINQIAFNPKLQWVAVG-TDQ---GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS--LAWNALGKKL  324 (343)
T ss_dssp             EEECSSCEEEEEECSSSCEEEEE-ESS---CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE--EEECSSSCCE
T ss_pred             eecCCCcEEEEEECCCCCEEEEE-CCC---CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE--EEECCCCCeE
Confidence                2457789999999877644 444   46677654432                     222333  7899999877


Q ss_pred             ccEEEecCCccccceeeee
Q psy519          313 ANLIVLDDDLKECNLETYS  331 (351)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~~  331 (351)
                      ... ..+..++.|+++++.
T Consensus       325 ~sg-~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          325 FAG-FTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEE-ETTSEEEEEEEEEEE
T ss_pred             EEe-cCCceEEEEEEEccC
Confidence            554 578889999987753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=290.76  Aligned_cols=269  Identities=14%  Similarity=0.135  Sum_probs=240.7

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      +|...|.+++|+|+  +++|++++.+|.|++|+....    +..|...|.+++|+|++.+ ++++.|+.|++||+.+++.
T Consensus       106 ~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          106 KTTNQVTCLAWSHD--GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             --CBCEEEEEECTT--SSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             CCCCceEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            36789999999999  999999999999999995544    7789999999999999987 9999999999999999999


Q ss_pred             eEEeeCCCCC---------------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           84 LRIFVGHKQD---------------VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        84 ~~~~~~~~~~---------------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      +..+..+...               +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence            9888877776               8999999975 58888999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV  228 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  228 (351)
                      ++++.   |+.|++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+++++.+..+. .+...+.+++
T Consensus       263 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~  337 (425)
T 1r5m_A          263 LSASD---DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGR  337 (425)
T ss_dssp             EEEET---TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEE
T ss_pred             EEEcC---CCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEE
Confidence            99998   9999999999999999998999999999999999 99999999999999999999888775 5668999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCc--------------------eeee-----e--ecceeEEecCCceeeeeeccce
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSAS--------------------KIGI-----G--VYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~--------------------~~~~-----~--~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      |+|++++|++++.||.|++||+.+++                    .+..     .  .+..++|+|++..+++++.++.
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence            99999999999999999999998877                    4443     2  6778999999999999988875


Q ss_pred             eeEE
Q psy519          282 VRTL  285 (351)
Q Consensus       282 ~~~~  285 (351)
                      ++.|
T Consensus       418 i~iw  421 (425)
T 1r5m_A          418 GSVV  421 (425)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            4443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.9e-41  Score=287.37  Aligned_cols=242  Identities=20%  Similarity=0.285  Sum_probs=202.8

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCC--CcE-EEEeCCCcE
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSK--GLA-LTGSRDTTA   73 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~--~~~-~~~~~d~~i   73 (351)
                      ..+..+|...|.+++|+|+  |++||+++.|++|++||+...       +.+|...|++++|+++  +.+ ++++.|++|
T Consensus         6 ~~~~~~H~~~V~~v~~s~~--g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYY--GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             --------CCEEEEEECGG--GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             eeecccccCeEEEeeEcCC--CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            3456789999999999999  999999999999999998754       6789999999999863  554 999999999


Q ss_pred             EEEeCCCCe--eeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCce---eEEeccCCCCeEEEEEccC--
Q psy519           74 RLWSLEQMY--PLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPC--  144 (351)
Q Consensus        74 ~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~--  144 (351)
                      ++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+.+|...+.+++|+|+  
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence            999998863  56677889999999999997  78999999999999999987632   3455678899999999997  


Q ss_pred             ---------------CCEEEEEecCCCCCeEEEEEccCC---ceeEEeccCCCCEEEEEECCCC----cEEEEEcCCCeE
Q psy519          145 ---------------GKYLASGGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCG----KYLASGGEDGLV  202 (351)
Q Consensus       145 ---------------~~~l~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i  202 (351)
                                     +++|++++.   |+.|++||++..   +.+..+.+|...|.+++|+|++    ++|++++.|+.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~---D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGC---DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBT---TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             CccccccccccCccccceEEEecC---CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence                           468999988   999999999765   3566788999999999999986    899999999999


Q ss_pred             EEEEcCCCc----EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          203 LTHELTTGR----VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       203 ~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      ++||+.+..    ....+ ..+...|.+++|+|++++|++++.|+.|++|+..
T Consensus       241 ~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999987631    11222 2456789999999999999999999999999976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3e-39  Score=322.59  Aligned_cols=313  Identities=18%  Similarity=0.211  Sum_probs=268.5

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|...|.+++|+|+  +++|++++.||.|++|++.+.     +.+|...|.+++|+|++.+ ++++.|+.|++||+.+
T Consensus       611 ~~~h~~~v~~~~~s~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQD--GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             ECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EecccccEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            4589999999999999  999999999999999999887     6789999999999999988 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           81 MYPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      ++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+++++....+.+|...|.+++|+|+++++++++.   |+
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg  765 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA---DG  765 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES---SS
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC---CC
Confidence            999999999999999999999  5568999999999999999999999999999999999999999999999999   99


Q ss_pred             eEEEEEccCCceeEEe-------------------------------------------------------ccCCCCEEE
Q psy519          159 AVRLWSITDGASVRVF-------------------------------------------------------SDHVSPVLS  183 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~-------------------------------------------------------~~~~~~i~~  183 (351)
                      .|++||+++++....+                                                       ..|...+.+
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~  845 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY  845 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred             eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence            9999999876543322                                                       156778899


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK--------  255 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--------  255 (351)
                      ++|+|+++++++++.||.|++||+.++..+..+. .|...|.+++|+|++++|++++.||.|++|++.+...        
T Consensus       846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  924 (1249)
T 3sfz_A          846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ  924 (1249)
T ss_dssp             EEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence            9999999999999999999999999998888775 6778999999999999999999999999999753210        


Q ss_pred             ----------------------------------eeeeecceeEEecCCceeeeeeccceeeEEEeeeceeCc-------
Q psy519          256 ----------------------------------IGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP-------  294 (351)
Q Consensus       256 ----------------------------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~-------  294 (351)
                                                        .....+..++++|++..++++..++.+   ++|+..++.       
T Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i---~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A          925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI---KIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp             EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC---EEEETTTTSCEEECCC
T ss_pred             eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE---EEEEcCCCceeeeccc
Confidence                                              001345678999999999999988855   455544443       


Q ss_pred             -eEEEeeEEEEecCCceeeccEEEecCCccccceeeee
Q psy519          295 -VVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYS  331 (351)
Q Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  331 (351)
                       ...+.+  +.|+|++.+.... ..+..++.|++.+..
T Consensus      1002 h~~~v~~--l~~s~dg~~l~s~-~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A         1002 HKKAVRH--IQFTADGKTLISS-SEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             CSSCCCC--EEECSSSSCEEEE-CSSSBEEEEETTTTE
T ss_pred             CCCceEE--EEECCCCCEEEEE-cCCCEEEEEECCCCc
Confidence             333444  6899998876544 467788999887643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-40  Score=294.05  Aligned_cols=279  Identities=14%  Similarity=0.129  Sum_probs=222.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEe
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~   77 (351)
                      ..+|...|++++|+|.. +.+||+|+.||.|+|||+...       ..+|.+.|++++|+| ++.+ ++++.|++|++||
T Consensus       115 ~~~~~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEECSSCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            34678899999999951 679999999999999998765       568999999999998 5655 9999999999999


Q ss_pred             CCCCeeeEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCC-EEEEEecC
Q psy519           78 LEQMYPLRIFVG--HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASGGTG  154 (351)
Q Consensus        78 ~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~  154 (351)
                      ++++........  +...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ ++++++. 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~-  271 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV-  271 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET-
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC-
Confidence            987654433332  33467889999999999999999999999986 456777888999999999999876 6778888 


Q ss_pred             CCCCeEEEEEccCCceeEE---eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----CCEEE
Q psy519          155 SYDKAVRLWSITDGASVRV---FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----EPVTS  226 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~  226 (351)
                        |+.|++||+++.+....   ...|..+|.+++|+|++++|++++.||.|++||++++.....+.....     ..+..
T Consensus       272 --d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          272 --DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             --TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             --cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence              99999999988754433   356889999999999999999999999999999999887766532211     12445


Q ss_pred             EEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeee------eeccee-EEecCCceeeeeeccceeeEEEe
Q psy519          227 LVWSVTGETLVTGS------------LTGTVQFYGWPSASKIGI------GVYPRC-AAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       227 ~~~~~~~~~l~~~~------------~dg~i~i~~~~~~~~~~~------~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ..|+|++.+++++.            .++.|++||..+++.+..      ..+.++ +|+|+|..++++. ++   .+++
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~---~i~i  425 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY---HILI  425 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS---EEEE
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC---cEEE
Confidence            67777777776654            235799999999987764      234454 6999999988754 43   5889


Q ss_pred             eeceeCc
Q psy519          288 MHEIVGP  294 (351)
Q Consensus       288 ~~~~~g~  294 (351)
                      |+...|+
T Consensus       426 W~~~~gk  432 (435)
T 4e54_B          426 WSQQEAR  432 (435)
T ss_dssp             CCCC---
T ss_pred             EECCcCe
Confidence            9988776

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-39  Score=283.76  Aligned_cols=236  Identities=24%  Similarity=0.395  Sum_probs=211.5

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ...|.+++|+|+  +++|++++.|+.|++||+...     +.+|...|.+++|+|++.+ ++++.|++|++||+++++..
T Consensus       123 ~~~v~~v~~s~d--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          123 DLYIRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             CCBEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceeEEEEEECCC--CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence            345999999999  999999999999999999877     6789999999999999987 99999999999999999887


Q ss_pred             EEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEe-------ccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           85 RIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVF-------SDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      ..+. +...+.+++|+| ++++|++++.|+.|++||+++++.+..+       .+|...|.+++|+|++++|++++.   
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---  276 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL---  276 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC---
Confidence            7775 566799999999 8999999999999999999998877766       568899999999999999999999   


Q ss_pred             CCeEEEEEccCC------------ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          157 DKAVRLWSITDG------------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       157 d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      |+.|++||+++.            .....+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+. .|...|
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v  355 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSV  355 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCE
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCE
Confidence            999999999763            3455677899999999999999999999999999999999999888775 577899


Q ss_pred             EEEEEcC------CCCEEEEEeCCCeEEEEeCCCC
Q psy519          225 TSLVWSV------TGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       225 ~~~~~~~------~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      .+++|++      ++++|++|+.||.|++|+++..
T Consensus       356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999986      6889999999999999998643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-40  Score=288.97  Aligned_cols=244  Identities=23%  Similarity=0.369  Sum_probs=218.0

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCC--cEEEEeCCCc
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKG--LALTGSRDTT   72 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~--~~~~~~~d~~   72 (351)
                      ..+|...|.+++|+|+  +++|++++.|+.+++|++...            +.+|.+.|.++.|.|++  .+++|+.|++
T Consensus       104 ~~~h~~~v~~~~~s~~--g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~  181 (380)
T 3iz6_a          104 IKLHCPWVMECAFAPN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT  181 (380)
T ss_dssp             EECCCTTCCCCEECTT--SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred             EecCCCCEEEEEECCC--CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence            3568889999999999  999999999999999998642            66899999999999974  4599999999


Q ss_pred             EEEEeCCCCeeeEEe-----eCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC-CCceeEEeccCCCCeEEEEEccCC
Q psy519           73 ARLWSLEQMYPLRIF-----VGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        73 i~vw~~~~~~~~~~~-----~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                      |++||+.+++.+..+     .+|...|.+++|++ ++++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++
T Consensus       182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~  261 (380)
T 3iz6_a          182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG  261 (380)
T ss_dssp             EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred             EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence            999999999988776     57889999999987 88999999999999999998 457788899999999999999999


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCceeEEeccCC-------CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee-
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-------SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH-  217 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  217 (351)
                      ++|++++.   |+.|++||+++++.+..+..+.       ..+.+++|+|+|++|++|+.||.|++||+..++.+..+. 
T Consensus       262 ~~l~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~  338 (380)
T 3iz6_a          262 QRFGTGSD---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT  338 (380)
T ss_dssp             SEEEEECS---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CeEEEEcC---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence            99999999   9999999999998888775432       248899999999999999999999999999988877662 


Q ss_pred             --ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          218 --LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       218 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                        ..|...|.+++|+|+|++|++|+.||.|++|++...+.
T Consensus       339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence              34668899999999999999999999999999987643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-39  Score=287.57  Aligned_cols=270  Identities=15%  Similarity=0.248  Sum_probs=229.1

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ..+....|+|+  +++|++++.|+.|++|++...     +.+|...|.+++|+|++.+ ++++.|+.|++||+.+++.+.
T Consensus        98 ~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A           98 DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             CEEEEEEECSS--SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred             CceEEEEEecC--CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence            34455688999  999999999999999999877     5789999999999999987 999999999999999999999


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc---CCCCeEE---------------------EEE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD---HVSPVLS---------------------IAF  141 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------~~~  141 (351)
                      .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..   +...+.+                     ++|
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            9999999999999999999999999999999999999998888764   3344444                     445


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCCCCEEEEEECCCCc-EEEEEcCCCeEEEEEcCCCcE-EEEeec
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGK-YLASGGEDGLVLTHELTTGRV-ISRFHL  218 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~  218 (351)
                      +|+++++++++.   |+.|++||+++++.+..+. .|...+.+++|+|++. +|++++.||.|++||+++++. +..+..
T Consensus       256 s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          256 GTYGKYVIAGHV---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI  332 (420)
T ss_dssp             SCTTEEEEEEET---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred             cCCCCEEEEEcC---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence            788999999999   9999999999998777764 4788999999999998 999999999999999998754 566665


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------------eeeecceeEEecCCc---eeeeeeccce
Q psy519          219 QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI--------------GIGVYPRCAAQPVGF---EAATLAANSR  281 (351)
Q Consensus       219 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~--------------~~~~~~~~~~s~~~~---~~~~~~~~~~  281 (351)
                      .+...+..+.+ +++++|++++.||.|++|++......              ....+..++|+|++.   .+++.+.++.
T Consensus       333 ~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~  411 (420)
T 3vl1_A          333 NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF  411 (420)
T ss_dssp             STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred             cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce
Confidence            56678888865 57889999999999999998763221              124667899999999   6777777664


Q ss_pred             eeEEEeeec
Q psy519          282 VRTLREMHE  290 (351)
Q Consensus       282 ~~~~~~~~~  290 (351)
                         +.+|+.
T Consensus       412 ---~~~~~~  417 (420)
T 3vl1_A          412 ---CALYNL  417 (420)
T ss_dssp             ---EEEEES
T ss_pred             ---EEEEec
Confidence               455543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-39  Score=273.42  Aligned_cols=271  Identities=18%  Similarity=0.230  Sum_probs=237.6

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      +...+|...|.+++| |+  +++|++++.||.|++|++...     ...|...|.+++|+|++.+ ++++.|+.+++|++
T Consensus        12 ~~l~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEECCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHhhCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            456789999999999 99  999999999999999999876     6678999999999999988 99999999999998


Q ss_pred             CCC---eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEecC
Q psy519           79 EQM---YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGTG  154 (351)
Q Consensus        79 ~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~  154 (351)
                      ...   +....+.+|...|.+++|  +++++++++.|+.|++||  .++....+..|...+.+++|+| +++++++++. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  163 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA-  163 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET-
T ss_pred             eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC-
Confidence            754   567778899999999999  467999999999999999  6778888888999999999998 9999999998 


Q ss_pred             CCCCeEEEEEccCCceeEEecc-CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          155 SYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                        |+.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+. .+...+.+++|+|++
T Consensus       164 --d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          164 --DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG  237 (313)
T ss_dssp             --TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS
T ss_pred             --CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC
Confidence              99999999  4556666766 889999999999998 8999999999999999999988886 577899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                       .|++++.||.|++||+.+++....     ..+..++|+|++. +++++.++   .+++|+...++
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~iw~~~~~~  298 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDN---LVRIFSQEKSR  298 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTS---CEEEEESCGGG
T ss_pred             -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCC---cEEEEeCCCCc
Confidence             588999999999999999987765     3566799999998 45566665   67777777665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-41  Score=293.81  Aligned_cols=239  Identities=18%  Similarity=0.205  Sum_probs=201.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .+.+.+..+|.+++|+|+  +++|++++.|+.|++|++...       +.+|...|.+++|+|++.+ ++++.|+.|++|
T Consensus         5 ~~~~~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQ--RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEEECSSCCSCCEECSS--SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred             eeEecCCCcEEEEEECCC--CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            344556789999999999  999999999999999999864       6789999999999999976 999999999999


Q ss_pred             eCCCCe---eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---eeEEecc-CCCCeEEEEEccCCCEEE
Q psy519           77 SLEQMY---PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSD-HVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        77 ~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~  149 (351)
                      |+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|+
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            999877   667778899999999999999999999999999999999887   3677777 999999999999999999


Q ss_pred             EEecCCCCCeEEEEEccC------------------CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          150 SGGTGSYDKAVRLWSITD------------------GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      +++.   |+.|++||++.                  ++.+..+ .|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       163 ~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          163 AGCA---DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEES---SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEeC---CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            9999   99999999852                  4455556 899999999999999999999999999999999887


Q ss_pred             E----EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          212 V----ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       212 ~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .    +..+. .+...|.+++|+|++++|++++.++.+ +|+..
T Consensus       239 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          239 QPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            6    55554 566789999999999999999876666 66655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.7e-38  Score=283.17  Aligned_cols=274  Identities=21%  Similarity=0.326  Sum_probs=240.9

Q ss_pred             CCCCccce-EEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHF-IQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v-~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      ..+|...+ .++.+  +  +++|++|+.||.|++||+.+.     +.+|.+.|++++|++++.+++++.|++|++||+++
T Consensus       117 l~~h~~~v~~~~~~--~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EECCSSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCCcEEEEEE--C--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence            45777775 55555  5  789999999999999999887     67899999999999999779999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCce-----------------------eEEeccCCCC
Q psy519           81 MYPLRIFVGHKQDVTCARFH--PKITYIGTGSYDKAVRLWSITDGAS-----------------------VRVFSDHVSP  135 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~~~~~~~  135 (351)
                      ++.+..+.+|...|.+++|+  ++++++++++.|+.|++||++++..                       ...+.+|...
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence            99999999999999999998  5788999999999999999987653                       4456678888


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      +.++  +++++++++++.   |+.|++||+++++.+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..
T Consensus       273 v~~~--~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  347 (464)
T 3v7d_B          273 VRTV--SGHGNIVVSGSY---DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  347 (464)
T ss_dssp             EEEE--EEETTEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEE--cCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            8876  568999999999   99999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeece
Q psy519          216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       216 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                      +. .|...|.+++|+  +++|++++.||.|++||+.+++....    .....++++|++..+++++ ++   .+++|+..
T Consensus       348 ~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg---~i~iwd~~  420 (464)
T 3v7d_B          348 LQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN---QFNIYNLR  420 (464)
T ss_dssp             EC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TT---EEEEEETT
T ss_pred             Ee-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CC---eEEEEECC
Confidence            86 577899999997  58999999999999999998876644    3445679999999888876 44   68888888


Q ss_pred             eCceE
Q psy519          292 VGPVV  296 (351)
Q Consensus       292 ~g~~~  296 (351)
                      +|+..
T Consensus       421 ~g~~~  425 (464)
T 3v7d_B          421 SGKLV  425 (464)
T ss_dssp             TCCEE
T ss_pred             CCcEE
Confidence            87754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-40  Score=294.42  Aligned_cols=248  Identities=14%  Similarity=0.162  Sum_probs=213.3

Q ss_pred             CcCCCCccceEEeeecC-CccccEEEEecCCCceEEEecCC---c-------cCCCccceEEEEECCCCcE-EEEeCCCc
Q psy519            5 HLNHGDHKHFIQNSFKP-ETVEDVLANLESQKNLQSRYLPY---Y-------TSGHDMTVWSVEACSKGLA-LTGSRDTT   72 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~---~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~   72 (351)
                      .+..+|...|.+++|+| +  +++|++|+.||.|++|++..   .       ...|...|.+++|+|++.+ ++++.|+.
T Consensus        57 ~~~~~h~~~V~~~~~s~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGE--TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EECTTTTSCEEEEEEECSS--SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeccCCCCceEEEEECCCC--CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            34478999999999999 9  99999999999999999876   2       2268999999999999987 99999999


Q ss_pred             EEEEeCC---CCeeeEEee----------C--CCCCeEEEE--EeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc--CC
Q psy519           73 ARLWSLE---QMYPLRIFV----------G--HKQDVTCAR--FHPKITYIGTGSYDKAVRLWSITDGASVRVFSD--HV  133 (351)
Q Consensus        73 i~vw~~~---~~~~~~~~~----------~--~~~~i~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~  133 (351)
                      |++||++   +++....+.          .  +...+.++.  +++++.+|++++.|+.|++||+++++.+..+..  |.
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~  214 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH  214 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGG
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC
Confidence            9999995   444433322          1  455677777  567899999999999999999999999999987  88


Q ss_pred             CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCCCCEEEEEECC----CCcEEEEEcCCCeEEEEEcC
Q psy519          134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSP----CGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       134 ~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~  208 (351)
                      ..|.+++|+|++++|++++.   |+.|++||+++++.+..+. .|..+|.+++|+|    ++.+|++++.||.|++||++
T Consensus       215 ~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          215 GAVSSICIDEECCVLILGTT---RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             CCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEcC---CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            99999999999999999999   9999999999999888876 7778999996664    67899999999999999999


Q ss_pred             CCcEEEEeecc-------------------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          209 TGRVISRFHLQ-------------------------EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       209 ~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      +++.+..+...                         +...|.+++|+ ++++|++|+.||.|++||+.+++....
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            99888777522                         33568899999 779999999999999999999876654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-39  Score=310.17  Aligned_cols=201  Identities=13%  Similarity=0.133  Sum_probs=179.2

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCc-EEEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~d~~i~vw~~~~~   81 (351)
                      ..+|...|.+++|+|+  +++||+|+.||.|++|+....    ...|...|.+++|+| ++ +++++.|++|++||++++
T Consensus        13 ~~gh~~~V~~lafspd--g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFT--QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEECSSCEEEEEEETT--TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             ccCCCCCcEEEEECCC--CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            3578999999999999  999999999999999998776    345788999999999 77 499999999999999999


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-----------EEeccCCCCeEEEEEccC-CCEEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV-----------RVFSDHVSPVLSIAFSPC-GKYLA  149 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~l~  149 (351)
                      +.+..+. |...|++++|+|+++++++|+.||.|++||+++++..           ..+.+|..+|.+++|+|+ +..++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            9888886 6688999999999999999999999999999987753           234568899999999996 47888


Q ss_pred             EEecCCCCCeEEEEEccCCceeEEeccC------------------CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc
Q psy519          150 SGGTGSYDKAVRLWSITDGASVRVFSDH------------------VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      +++.   |+.| +||+++++.+..+..|                  ...|.+++|+|+|++|++++.||.|++||+++++
T Consensus       169 ~g~~---dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          169 ISYE---YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EECS---SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEeC---CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            8888   9999 9999999888887655                  4679999999999999999999999999999988


Q ss_pred             EEEE
Q psy519          212 VISR  215 (351)
Q Consensus       212 ~~~~  215 (351)
                      .+..
T Consensus       245 ~~~~  248 (902)
T 2oaj_A          245 MIMA  248 (902)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-39  Score=282.66  Aligned_cols=266  Identities=21%  Similarity=0.299  Sum_probs=231.2

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      .+++|+    +..+++++.|+.|++|++..+      ...|...|.+++|+|++.+ ++++.||.|++||+++++.+..+
T Consensus        97 ~~~~~s----~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A           97 NLLDWS----NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             BCEEEC----TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEeec----CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence            345555    445778889999999999887      3348899999999999988 99999999999999999999999


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .+|...|.+++|+  ++.+++++.||.|++||++ .......+.+|...|.+++|+|++++|++++.   |+.|++||++
T Consensus       173 ~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~  247 (401)
T 4aez_A          173 AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN---DNVVQIWDAR  247 (401)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETT
T ss_pred             cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC---CCeEEEccCC
Confidence            9999999999995  5799999999999999998 46677888889999999999999999999999   9999999999


Q ss_pred             CCceeEEeccCCCCEEEEEECCCC-cEEEEEc--CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE--EeC
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCG-KYLASGG--EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT--GSL  241 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~  241 (351)
                      +++.+..+..|...|.+++|+|++ .++++++  .|+.|++||+++++.+..+.  +...+.+++|+|+++++++  |+.
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTT
T ss_pred             CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecC
Confidence            999999999999999999999976 5666654  79999999999999888774  5678999999999999999  448


Q ss_pred             CCeEEEEeCCCCceeee-------eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          242 TGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ||.|++||+++++....       ..+..++|+|++..+++++.++   .+++|+...++
T Consensus       326 dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg---~i~iw~~~~~~  382 (401)
T 4aez_A          326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE---NLKFWRVYDGD  382 (401)
T ss_dssp             TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS---EEEEEECCC--
T ss_pred             CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEECCCCc
Confidence            99999999998755433       4677899999999999998887   56777776665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=289.87  Aligned_cols=264  Identities=14%  Similarity=0.229  Sum_probs=221.4

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------------cCCCc------------cceEEEEECC
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------------TSGHD------------MTVWSVEACS   60 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------------~~~~~------------~~i~~~~~~~   60 (351)
                      .+...|.+++|+|+  |++||+|+.||.|++|++...                +.+|.            ..|.+++|+|
T Consensus        26 ~~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           26 AEADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CGGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            35789999999999  999999999999999998742                55787            8899999999


Q ss_pred             CC--cE-EEEeCCCcEEEEeCCCCeee---------------------------------------EE-eeCCCCCeEEE
Q psy519           61 KG--LA-LTGSRDTTARLWSLEQMYPL---------------------------------------RI-FVGHKQDVTCA   97 (351)
Q Consensus        61 ~~--~~-~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~~~~i~~i   97 (351)
                      ++  .+ ++++.|+.|++||+.+++..                                       .. ..+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            97  44 99999999999998764432                                       12 35799999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCC-CceeE-------EeccCCCCeEEEEEccCC-CEEEEEecCCCCCeEEEEEccCC
Q psy519           98 RFHPKITYIGTGSYDKAVRLWSITD-GASVR-------VFSDHVSPVLSIAFSPCG-KYLASGGTGSYDKAVRLWSITDG  168 (351)
Q Consensus        98 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~  168 (351)
                      +|+|++++|+++ .|+.|++||+++ ++...       .+..|...|.+++|+|++ ++|++++.   |+.|++||++++
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~  259 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS---KGTIRLCDMRAS  259 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET---TSCEEEEETTTC
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC---CCeEEEEECcCC
Confidence            999999999998 799999999984 44443       256789999999999998 99999999   999999999998


Q ss_pred             ce----eEEeccCCC------------CEEEEEECCCCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCC---------
Q psy519          169 AS----VRVFSDHVS------------PVLSIAFSPCGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHE---------  222 (351)
Q Consensus       169 ~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------  222 (351)
                      +.    ...+..|..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+.. +..         
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~l~~~~  337 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV-HEYLRSKLCSLY  337 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES-CGGGTTTHHHHH
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec-cccccccccccc
Confidence            86    778887776            8999999999999999998 9999999997 777766642 221         


Q ss_pred             ------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------------------------------------e
Q psy519          223 ------PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------------------------------------G  259 (351)
Q Consensus       223 ------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------------------------------------~  259 (351)
                            .+..++|+|++++|++|+.||.|++||+.+++.+..                                     .
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence                  133499999999999999999999999998876541                                     2


Q ss_pred             ecceeEEecCCceeeeeeccc
Q psy519          260 VYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       260 ~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      .+..++|+|++..+++++.++
T Consensus       418 ~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          418 KILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CCCEEEECSSSSEEEEECSSC
T ss_pred             ceeEEEECCCCCEEEEEecce
Confidence            345689999999998887765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.3e-39  Score=276.56  Aligned_cols=249  Identities=19%  Similarity=0.304  Sum_probs=217.6

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECC--CCcE-EEEeCC
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACS--KGLA-LTGSRD   70 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~--~~~~-~~~~~d   70 (351)
                      +..+..+|...|.+++|+|+  +++|++++.||.|++|++...         +.+|...|.+++|+|  ++.+ ++++.|
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFY--GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSS--SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccccCcccccceeEEEEcCC--CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            34667899999999999999  999999999999999999864         467999999999999  4766 999999


Q ss_pred             CcEEEEeCCCC---------eeeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeEEec---------
Q psy519           71 TTARLWSLEQM---------YPLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGASVRVFS---------  130 (351)
Q Consensus        71 ~~i~vw~~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------  130 (351)
                      +.|++||++++         +.+..+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999876         557788899999999999999  9999999999999999998877544332         


Q ss_pred             ----cCCCCeEEEEEccC---CCEEEEEecCCCCCeEEEEEccCCce--eEEeccCCCCEEEEEECCCC----cEEEEEc
Q psy519          131 ----DHVSPVLSIAFSPC---GKYLASGGTGSYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCG----KYLASGG  197 (351)
Q Consensus       131 ----~~~~~i~~~~~~~~---~~~l~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~  197 (351)
                          .+...+.+++|+|+   +..+++++.   ++.+.+|+...++.  +..+..|...|.+++|+|++    ++|++++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecC---CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                57789999999997   899999998   99998888777764  66777899999999999998    8999999


Q ss_pred             CCCeEEEEEcCCC----------------------------------------------cEEEEeeccCCCCEEEEEEcC
Q psy519          198 EDGLVLTHELTTG----------------------------------------------RVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       198 ~dg~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      .||.|++||++++                                              +.+..+. .|...|.+++|+|
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~  316 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNL  316 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcC
Confidence            9999999999864                                              3334343 4667899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      ++++|++++.||.|++|++.+++...
T Consensus       317 ~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             SSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             CCCEEEEecCCCcEEEEecCcCcchh
Confidence            99999999999999999999876554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=278.37  Aligned_cols=247  Identities=19%  Similarity=0.270  Sum_probs=215.7

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCC--CcE-EEEeCCCc
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSK--GLA-LTGSRDTT   72 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~--~~~-~~~~~d~~   72 (351)
                      +..+..+|...|.+++|+|+  +++|++++.||.|++|++...       +.+|...|++++|+++  +.+ ++++.|+.
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             --CCEEECCCCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccEEecCCcccEEEEEEcCC--CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            34567889999999999999  999999999999999999743       6789999999999977  766 99999999


Q ss_pred             EEEEeCCCCe--eeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEcc---
Q psy519           73 ARLWSLEQMY--PLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSP---  143 (351)
Q Consensus        73 i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~---  143 (351)
                      |++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+..|...|.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999887  67778889999999999999  9999999999999999998874  3445677899999999999   


Q ss_pred             ----------CCCEEEEEecCCCCCeEEEEEccCCc----eeEEeccCCCCEEEEEECCC---CcEEEEEcCCCeEEEEE
Q psy519          144 ----------CGKYLASGGTGSYDKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPC---GKYLASGGEDGLVLTHE  206 (351)
Q Consensus       144 ----------~~~~l~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d  206 (351)
                                ++.++++++.   |+.|++||++++.    ....+..|..+|.+++|+|+   +++|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999   9999999998765    44567789999999999999   89999999999999999


Q ss_pred             cCCCcE---EEEee-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          207 LTTGRV---ISRFH-LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       207 ~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      ++++..   ..... ..+...+.+++|+|++++|++++.||.|++|++....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            988642   22221 1255789999999999999999999999999998544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.4e-38  Score=278.30  Aligned_cols=273  Identities=17%  Similarity=0.216  Sum_probs=232.7

Q ss_pred             eEEeeecCCccccEEE-EecCCCceEEEecCCc---------cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCC
Q psy519           14 FIQNSFKPETVEDVLA-NLESQKNLQSRYLPYY---------TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~-~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ...++++|+  ...++ +++.+|.|++|++...         +.+|...|++++|+| ++.+ ++++.|+.|++||+.++
T Consensus        37 ~~~~~~~~~--~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           37 SGFCAVNPK--FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SCSEEECSS--EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEECCC--eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345788888  65444 5788999999998653         568999999999999 7877 99999999999999987


Q ss_pred             -------eeeEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEE
Q psy519           82 -------YPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        82 -------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                             +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++|+++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  194 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS  194 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence                   5678889999999999999998 69999999999999999999999998  7899999999999999999999


Q ss_pred             ecCCCCCeEEEEEccCCceeEEe-ccCCCC-EEEEEECCCCcEEEEE---cCCCeEEEEEcCCCcE-EEEeeccCCCCEE
Q psy519          152 GTGSYDKAVRLWSITDGASVRVF-SDHVSP-VLSIAFSPCGKYLASG---GEDGLVLTHELTTGRV-ISRFHLQEHEPVT  225 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~  225 (351)
                      +.   |+.|++||+++++.+..+ ..|... +..+.|+|++++|++|   +.|+.|++||+++++. +......+...+.
T Consensus       195 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          195 CR---DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             ET---TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             ec---CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            99   999999999999998888 677765 8899999999999999   7899999999988664 4444445677899


Q ss_pred             EEEEcCCCCEEEE-EeCCCeEEEEeCCCCce----eee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          226 SLVWSVTGETLVT-GSLTGTVQFYGWPSASK----IGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       226 ~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~----~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      .++|+|++++|++ |+.||.|++||+.+++.    +..    ..+..++|+|++..++.  .++   .+++|+...+...
T Consensus       272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~---~~~~~~l~~~~~~  346 (402)
T 2aq5_A          272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE---IARFYKLHERKCE  346 (402)
T ss_dssp             EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE---EEEEEEEETTEEE
T ss_pred             EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce---eEEEEEcCCCcEE
Confidence            9999999999865 55799999999998873    221    56788999999998764  232   6778887776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.8e-39  Score=275.95  Aligned_cols=269  Identities=11%  Similarity=0.044  Sum_probs=233.3

Q ss_pred             CCCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCc-E-EEEeCC
Q psy519            1 MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGL-A-LTGSRD   70 (351)
Q Consensus         1 ~~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~-~-~~~~~d   70 (351)
                      |+...+..+|...|.+++|+|+  +++|++++.|+.|++|++...        ..+|...|.+++|+|++. + ++++.|
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   78 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CcceecccCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC
Confidence            5667788899999999999999  999999999999999998765        457899999999999999 6 999999


Q ss_pred             CcEEEEeC-CCCeeeEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---------CceeEEeccCCCCeEE
Q psy519           71 TTARLWSL-EQMYPLRIFVG--HKQDVTCARFHPKITYIGTGSYDKAVRLWSITD---------GASVRVFSDHVSPVLS  138 (351)
Q Consensus        71 ~~i~vw~~-~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~  138 (351)
                      +.|++||+ ++++. ..+.+  |...|.+++|+| ++.+++++.|+.|++||+++         ++.+..+. +...+.+
T Consensus        79 g~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~  155 (342)
T 1yfq_A           79 GEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFT  155 (342)
T ss_dssp             SCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEE
T ss_pred             CeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEE
Confidence            99999999 87754 67778  999999999999 99999999999999999987         77666666 8899999


Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccC-Cc--eeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCC----
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITD-GA--SVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTG----  210 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~----  210 (351)
                      ++|+|++  +++++.   |+.|++||+++ +.  .......|...+.+++|+| +++++++++.||.+++|+++..    
T Consensus       156 ~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  230 (342)
T 1yfq_A          156 MDTNSSR--LIVGMN---NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEECSSE--EEEEES---TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             EEecCCc--EEEEeC---CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence            9999887  888888   99999999998 54  3334556888999999999 9999999999999999999876    


Q ss_pred             --cEEEEeeccC--------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------cceeEEecCCceee
Q psy519          211 --RVISRFHLQE--------HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV------YPRCAAQPVGFEAA  274 (351)
Q Consensus       211 --~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~s~~~~~~~  274 (351)
                        +....+....        ...|.+++|+|++++|++++.||.|++||+.+++.+....      +..++  |++..++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~  308 (342)
T 1yfq_A          231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILC  308 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred             ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEE
Confidence              6666664321        2389999999999999999999999999999998776533      33455  9999999


Q ss_pred             eeeccce
Q psy519          275 TLAANSR  281 (351)
Q Consensus       275 ~~~~~~~  281 (351)
                      +++.++.
T Consensus       309 s~s~Dg~  315 (342)
T 1yfq_A          309 LATSDDT  315 (342)
T ss_dssp             EEEECTH
T ss_pred             EEecCCc
Confidence            9999885

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.5e-38  Score=266.12  Aligned_cols=238  Identities=20%  Similarity=0.269  Sum_probs=202.7

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC--CeeeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ--MYPLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|...|++++|+|+|++ ++|+.|++|++||+++  .+.+..+.+|..+|.+++|+|+  +++|++++.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            4589999999999999988 9999999999999974  4677889999999999999863  899999999999999999


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECCC-----
Q psy519          121 TDGA--SVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPC-----  189 (351)
Q Consensus       121 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~-----  189 (351)
                      ++++  .+..+..|...|.+++|+|+  +.+|++++.   |+.|++||++++.  ....+..|...+.+++|+|+     
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~---d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC---CCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            8874  56677789999999999997  889999999   9999999998763  24567789999999999997     


Q ss_pred             --------CcEEEEEcCCCeEEEEEcCCCc----EEEEeeccCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCc
Q psy519          190 --------GKYLASGGEDGLVLTHELTTGR----VISRFHLQEHEPVTSLVWSVTG---ETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       190 --------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~~~~~~~  254 (351)
                              +++|++|+.|+.|++||+++++    ....+. .|...|.+++|+|++   .+|++++.|+.|++||+++..
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                    5799999999999999998765    344443 567899999999984   899999999999999998743


Q ss_pred             ------ee----eeeecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          255 ------KI----GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       255 ------~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                            .+    ....+..++|+|++..+++++.++.   +++|+.
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~---v~lw~~  283 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK---VTLWKE  283 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC---EEEEEE
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc---EEEEEE
Confidence                  11    1234667999999999999998875   556654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.2e-38  Score=301.61  Aligned_cols=313  Identities=17%  Similarity=0.209  Sum_probs=251.5

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+|..+|.+++|+|+  +++|++++.||.|++|++.+.     +.+|...|++++|+|++.+ ++++.|+.|++||+++
T Consensus        51 ~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           51 IQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             EECCSSCEEEEEEEGG--GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             EecCCCcEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            3468999999999999  999999999999999999877     6779999999999999987 9999999999999988


Q ss_pred             C-eeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCC-CCeEEEEEcc--CCCEEEEEecCC
Q psy519           81 M-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHV-SPVLSIAFSP--CGKYLASGGTGS  155 (351)
Q Consensus        81 ~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~~  155 (351)
                      + .....+.+|...|.+++|+| +++.+++++.||.|++||+.+++....+..+. ..+.+++|+|  ++.++++++.  
T Consensus       129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--  206 (814)
T 3mkq_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--  206 (814)
T ss_dssp             TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT--
T ss_pred             CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC--
Confidence            6 67778889999999999999 88999999999999999999888777776554 8899999999  9999999998  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCC------------
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP------------  223 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------  223 (351)
                       |+.|++||+++++.+..+..|...+.+++|+|+++++++++.||.|++||+.+++.+..+. .+...            
T Consensus       207 -dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          207 -DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRK  284 (814)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGG
T ss_pred             -CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCc
Confidence             9999999999999999999999999999999999999999999999999998766554442 11122            


Q ss_pred             --------------------------------------------------------------------------EEEEEE
Q psy519          224 --------------------------------------------------------------------------VTSLVW  229 (351)
Q Consensus       224 --------------------------------------------------------------------------v~~~~~  229 (351)
                                                                                                +.+++|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (814)
T 3mkq_A          285 NYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH  364 (814)
T ss_dssp             GEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred             eEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence                                                                                      355666


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeeeeecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEeeEEEEecCCc
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDK  309 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  309 (351)
                      +|+|+++++++ ++.+.+|++..........+..++|+|++..++++..++.+   ++|+...++...+..  ..|+|++
T Consensus       365 spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v---~l~~~~~~~~~~v~~--~~~s~dg  438 (814)
T 3mkq_A          365 SPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQI---KYYKNFKEVTSWSVP--MHSAIDR  438 (814)
T ss_dssp             CTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCE---EEEETTEECTTCCCC--CSSCCCE
T ss_pred             CCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcE---EEEECCCCccceEEc--CCcCccc
Confidence            67777666666 66777777666655556667777777777777777666643   444444444333333  5677887


Q ss_pred             e---eeccEEEecCCccccceeeeee
Q psy519          310 W---YEANLIVLDDDLKECNLETYSQ  332 (351)
Q Consensus       310 ~---~~~~~~~~~~~i~~~~~~~~~~  332 (351)
                      .   ++. ....+..+..|+++++..
T Consensus       439 ~~~~~l~-~~~~d~~v~~~d~~~~~~  463 (814)
T 3mkq_A          439 LFSGALL-GVKSDGFVYFFDWDNGTL  463 (814)
T ss_dssp             EECSSSE-EEEETTEEEEECTTTCCE
T ss_pred             eecceEE-EEecCCEEEEEECCcCcE
Confidence            3   222 224667788888765543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-40  Score=296.70  Aligned_cols=310  Identities=12%  Similarity=-0.005  Sum_probs=231.1

Q ss_pred             ccceEEeeecCCccc---------cEEEE-------------------ecCCCceEEEecCCc---------cCCCccce
Q psy519           11 HKHFIQNSFKPETVE---------DVLAN-------------------LESQKNLQSRYLPYY---------TSGHDMTV   53 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~---------~~l~~-------------------~~~~~~i~i~~~~~~---------~~~~~~~i   53 (351)
                      ...|.+|+|+|+  +         ++||+                   ++.|++|+||++...         +.+|.+.|
T Consensus       133 ~~~V~sv~w~p~--~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          133 GGLVTDIAWLNI--EENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             CC--CCCSCEEE--CCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             CCceeEEEeccc--CCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            467888888887  5         56666                   446789999998765         23567889


Q ss_pred             EEEEECCC------CcE-EEEeCCCcEEEEeCCCCee-----------eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy519           54 WSVEACSK------GLA-LTGSRDTTARLWSLEQMYP-----------LRIFVGHKQDVTCARFHPKITYIGTGSYDKAV  115 (351)
Q Consensus        54 ~~~~~~~~------~~~-~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  115 (351)
                      ++++|+|+      +.+ ++++.|++|++||+.+++.           ...+.+|...|++++|+++ ..|++|+.||+|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence            99999997      345 9999999999999986532           2367789999999999986 489999999999


Q ss_pred             EEEeCCCCc-eeEEeccCCCCeEEE--EEccCC-CEEEEEecCCCCCeEEEEEccCCceeEEeccCCC--CEEEEEECCC
Q psy519          116 RLWSITDGA-SVRVFSDHVSPVLSI--AFSPCG-KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS--PVLSIAFSPC  189 (351)
Q Consensus       116 ~i~d~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~  189 (351)
                      ++||+++++ +...+.+|...|.++  +|+|++ ++|++++.   |+.|++||+++++.+..+.+|..  .+.+++|+|+
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~---D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV---DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET---TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc---CCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            999998764 456688899999999  578887 89999999   99999999999877666666543  4788999999


Q ss_pred             CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---------ee
Q psy519          190 GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI---------GV  260 (351)
Q Consensus       190 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------~~  260 (351)
                      ++.+++++.|+.|++||++++..+..+. .|...|.+++|+|++++|++|+.||+|++||+..+.....         ..
T Consensus       367 ~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~  445 (524)
T 2j04_B          367 IYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLR  445 (524)
T ss_dssp             TTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCE
T ss_pred             cCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeE
Confidence            9999999999999999999998877765 5778999999999999999999999999999865422110         13


Q ss_pred             cceeEEecCCceeeeeeccceeeEE----EeeeceeCceEEEeeEEEEecCCceee--ccEEEecCCccccceeee
Q psy519          261 YPRCAAQPVGFEAATLAANSRVRTL----REMHEIVGPVVVVESFIVEIRPDKWYE--ANLIVLDDDLKECNLETY  330 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~  330 (351)
                      +..++|+|++..+.. ..+-.+..+    .......|+...+.+  +.|+|++..-  ...-..+..+++|++...
T Consensus       446 v~~v~~sp~g~~~~~-~~~~~~~~~~~~g~~~~~l~gh~~~V~~--Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          446 LWKWDYSIKDDKYRI-DSSYEVYPLTVNDVSKAKIDAHGINITC--TKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             EEECBCCSSSCEEEE-CCCCCCCC-------------CCCSCCC--EEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             EEEeccCCCCCeEEc-cCCceecccccCCcceeeecCCCceEEE--EECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            457889999984422 111111000    011223455555666  7899997521  112134577999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.7e-38  Score=272.50  Aligned_cols=197  Identities=13%  Similarity=0.092  Sum_probs=169.4

Q ss_pred             ceEEEEECCCCcE-EE--EeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q psy519           52 TVWSVEACSKGLA-LT--GSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV  128 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  128 (351)
                      .+.+++|+|||++ ++  ++.|++|+|||+++++++..+. |...|.+++|+|+++++++++. +.+.+|+..+++.+..
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceee
Confidence            3678999999987 44  4478999999999999988885 7778999999999999999885 5577777777765543


Q ss_pred             --eccCCCCeEEEEEccCCCEEEEEecCCCCC----eEEEEEccCCce----eEEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          129 --FSDHVSPVLSIAFSPCGKYLASGGTGSYDK----AVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       129 --~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                        ...|...+.+++|+|+++++++++.   |+    .+++||+.....    ...+..|..+|.+++|+|||++||+|+.
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~---d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASL---KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEE---SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEec---CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence              3567889999999999999999987   65    688899877643    3456789999999999999999999999


Q ss_pred             CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          199 DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       199 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      |+.|+|||+++++.+..+...|...|++++|+|||++|++|+.|++|+||+++..
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999998876568899999999999999999999999999999754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=272.76  Aligned_cols=283  Identities=16%  Similarity=0.182  Sum_probs=232.6

Q ss_pred             CcCCCCccceEEeeecC-CccccEEEEecCCCceEEEecCCc-----c-------------CCCccceEEEEECC-CCcE
Q psy519            5 HLNHGDHKHFIQNSFKP-ETVEDVLANLESQKNLQSRYLPYY-----T-------------SGHDMTVWSVEACS-KGLA   64 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~-----~-------------~~~~~~i~~~~~~~-~~~~   64 (351)
                      .+..+|..+|.+++|+| +  +++|++++.||.|++|++...     .             .+|...|.+++|+| ++.+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVE--GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             EECCCCSSCEEEEEECTTT--CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             eeeeccCCcEEEEEEecCC--CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            45678999999999999 9  999999999999999999876     1             25999999999999 5555


Q ss_pred             -EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEE
Q psy519           65 -LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        65 -~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  140 (351)
                       ++++.|+.|++||+.+++....+. +...+.++.++|.   +.++++++.++.|++||+++++.+..+..|...|.+++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence             999999999999999999887775 7788999999984   45999999999999999999999999999999999999


Q ss_pred             EccCCC-EEEEEecCCCCCeEEEEEccCCc-eeEEe---------------ccCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          141 FSPCGK-YLASGGTGSYDKAVRLWSITDGA-SVRVF---------------SDHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       141 ~~~~~~-~l~~~~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      |+|+++ ++++++.   |+.|++||++++. .+..+               ..|...|.+++|+|++++|++++.||.|+
T Consensus       194 ~~~~~~~ll~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          194 WSPRYDYILATASA---DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             ECSSCTTEEEEEET---TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ECCCCCcEEEEEcC---CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence            999998 5888888   9999999998765 34443               46888999999999999999999999999


Q ss_pred             EEEcCCCcEEEEeeccC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceee
Q psy519          204 THELTTGRVISRFHLQE----HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAA  274 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~  274 (351)
                      +||+++++.........    ...+........+..+++++.++.|++||+.+++.+..     ..+..++|+|++..++
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence            99999887654332111    11222222233455667777899999999999988765     4567899999999999


Q ss_pred             eeeccceeeEEEeeeceeCceE
Q psy519          275 TLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +++.++   .+++|+..+++..
T Consensus       351 s~~~dg---~i~iw~~~~~~~~  369 (408)
T 4a11_B          351 SGSRDC---NILAWVPSLYEPV  369 (408)
T ss_dssp             EEETTS---CEEEEEECC----
T ss_pred             EECCCC---eEEEEeCCCCCcc
Confidence            998887   5667777666533

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-37  Score=293.09  Aligned_cols=275  Identities=20%  Similarity=0.256  Sum_probs=232.5

Q ss_pred             cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCC-----eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy519           46 TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQM-----YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  118 (351)
                      +.+|.+.|++++|++++ .+ ++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            56899999999999875 45 99999999999999753     3456788999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe---ccCCCCEEEEEECCCC--cEE
Q psy519          119 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSPCG--KYL  193 (351)
Q Consensus       119 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~--~~l  193 (351)
                      |+.+++....+.+|...|.+++|+|++++|++++.   |+.|++||+.........   ..|...|.+++|+|++  ..+
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            99999999999999999999999999999999999   999999998655433332   3688899999999986  689


Q ss_pred             EEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecC
Q psy519          194 ASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPV  269 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~  269 (351)
                      ++++.|+.|++||+++++....+. .|...|.+++|+|++++|++|+.||.|++||+.+++.+..    ..+..++|+|+
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN  613 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence            999999999999999998887775 5778999999999999999999999999999999987754    45678999999


Q ss_pred             CceeeeeeccceeeEEEeeeceeCceEEEe-------------------------eEEEEecCCceeeccEEEecCCccc
Q psy519          270 GFEAATLAANSRVRTLREMHEIVGPVVVVE-------------------------SFIVEIRPDKWYEANLIVLDDDLKE  324 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~i~~  324 (351)
                      +..++.+..+    .+++|+..++......                         ...+.|+|++.++... ..|..++.
T Consensus       614 ~~~l~~~~~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg-s~Dg~i~i  688 (694)
T 3dm0_A          614 RYWLCAATEH----GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG-YTDGVIRV  688 (694)
T ss_dssp             SSEEEEEETT----EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE-ETTSEEEE
T ss_pred             CcEEEEEcCC----CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE-cCCCeEEE
Confidence            9888766543    3788887766543211                         1236799999887654 67888999


Q ss_pred             cceee
Q psy519          325 CNLET  329 (351)
Q Consensus       325 ~~~~~  329 (351)
                      |++..
T Consensus       689 W~i~~  693 (694)
T 3dm0_A          689 WGIGR  693 (694)
T ss_dssp             EEC--
T ss_pred             EeccC
Confidence            98754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6e-38  Score=313.22  Aligned_cols=315  Identities=20%  Similarity=0.287  Sum_probs=262.2

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCC--cE-EEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKG--LA-LTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~--~~-~~~~~d~~i~vw~~   78 (351)
                      ..+|...|.+++|+|+  +++|++++.|+.|++||+.+.     +.+|...|.+++|+|++  .+ ++++.|+.|++||+
T Consensus       653 ~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~  730 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSD--DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL  730 (1249)
T ss_dssp             ECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred             eccCCCCEEEEEEecC--CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence            3579999999999999  999999999999999999887     67899999999999954  45 89999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-----------------------------
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-----------------------------  129 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------------  129 (351)
                      .+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.+++....+                             
T Consensus       731 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  810 (1249)
T 3sfz_A          731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG  810 (1249)
T ss_dssp             TSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred             CCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence            999999999999999999999999999999999999999998766543322                             


Q ss_pred             --------------------------ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          130 --------------------------SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       130 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                                                .+|...+.+++|+|+++++++++.   |+.|++||+.++..+..+.+|...|.+
T Consensus       811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS---QYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS---SSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceeeecCCCccceEE
Confidence                                      156788999999999999999998   999999999999999999999999999


Q ss_pred             EEECCCCcEEEEEcCCCeEEEEEcCC------------------------------------------------------
Q psy519          184 IAFSPCGKYLASGGEDGLVLTHELTT------------------------------------------------------  209 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~dg~i~i~d~~~------------------------------------------------------  209 (351)
                      ++|+|+++++++++.||.+++||+.+                                                      
T Consensus       888 v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  967 (1249)
T 3sfz_A          888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC  967 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE
Confidence            99999999999999999999998542                                                      


Q ss_pred             -------------------------CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-------
Q psy519          210 -------------------------GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG-------  257 (351)
Q Consensus       210 -------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-------  257 (351)
                                               ++....+ ..|...|.+++|+|++++|++++.||.|++||+.+++...       
T Consensus       968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A          968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp             EECTTSSEEEEEETTSCCEEEETTTTSCEEEC-CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceeeec-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCc
Confidence                                     1111111 1345678999999999999999999999999987754321       


Q ss_pred             --------------------------------------eeecceeEEecCCceeeeeeccceeeEEEeeecee-------
Q psy519          258 --------------------------------------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV-------  292 (351)
Q Consensus       258 --------------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------  292 (351)
                                                            ...+..++|+|++..+++++.++.   +++|+..+       
T Consensus      1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~---v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT---AKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp             EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC---CCEECSSSSSCSBCC
T ss_pred             EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc---EEEEECCCcceeeee
Confidence                                                  124567899999999999888875   45555433       


Q ss_pred             -CceEEEeeEEEEecCCceeeccEEEecCCccccceeeeeee
Q psy519          293 -GPVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQM  333 (351)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  333 (351)
                       ++...+.+  +.|+|++.+.... ..+..++.|++.++...
T Consensus      1124 ~~h~~~v~~--~~~s~dg~~lat~-~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A         1124 KGHNGCVRC--SAFSLDGILLATG-DDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp             CCCSSCEEE--EEECSSSSEEEEE-ETTSCCCEEESSSSCCC
T ss_pred             ccCCCcEEE--EEECCCCCEEEEE-eCCCEEEEEECCCCceE
Confidence             33344445  7899999877654 56788999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.5e-37  Score=286.04  Aligned_cols=270  Identities=13%  Similarity=0.121  Sum_probs=238.7

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccc-eEEEEECC--CCcE-EEEeCCCc
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMT-VWSVEACS--KGLA-LTGSRDTT   72 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~-i~~~~~~~--~~~~-~~~~~d~~   72 (351)
                      ....|...|.+++|+|+  +++|++++ ++.|++|++.+.         +.+|... |.+++|+|  ++++ ++++.|+.
T Consensus        13 ~~~~~~~~v~~~~~spd--g~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~   89 (615)
T 1pgu_A           13 QPSTQRNFTTHLSYDPT--TNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK   89 (615)
T ss_dssp             CCCCCTTCCCCCEEETT--TTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CCCCccCceeEEEECCC--CCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence            45678899999999999  99999987 789999999743         6689999 99999999  9988 99999999


Q ss_pred             EEEEeCCCC--------eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeEEeccCCCCeEEEE
Q psy519           73 ARLWSLEQM--------YPLRIFVGHKQDVTCARFHPKITYIGTGSYD----KAVRLWSITDGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        73 i~vw~~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~  140 (351)
                      |++||+.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|.+++
T Consensus        90 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACH  167 (615)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEE
T ss_pred             EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEE
Confidence            999999754        6677888899999999999999999999987    6888888  6678888999999999999


Q ss_pred             EccCCC-EEEEEecCCCCCeEEEEEccCCceeEEeccCCC---CEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          141 FSPCGK-YLASGGTGSYDKAVRLWSITDGASVRVFSDHVS---PVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       141 ~~~~~~-~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      |+|+++ .+++++.   |+.|++||+++++.+..+..|..   .|.+++|+|+ +++|++++.||.|++||+++++.+..
T Consensus       168 ~~~~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  244 (615)
T 1pgu_A          168 LKQSRPMRSMTVGD---DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  244 (615)
T ss_dssp             ECSSSSCEEEEEET---TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             ECCCCCcEEEEEeC---CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence            999998 7999988   99999999999999999999998   9999999999 99999999999999999999998888


Q ss_pred             eec---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---------ceeEEecCCceeeeeeccceee
Q psy519          216 FHL---QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY---------PRCAAQPVGFEAATLAANSRVR  283 (351)
Q Consensus       216 ~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---------~~~~~s~~~~~~~~~~~~~~~~  283 (351)
                      +..   .+...|.+++|+ ++++|++++.||.|++||+++++.+.....         ..+.+ |++..+++++.++.+.
T Consensus       245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~  322 (615)
T 1pgu_A          245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLN  322 (615)
T ss_dssp             CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEE
T ss_pred             ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEE
Confidence            744   677899999999 999999999999999999999887765332         24555 4888888888887544


Q ss_pred             EE
Q psy519          284 TL  285 (351)
Q Consensus       284 ~~  285 (351)
                      .+
T Consensus       323 ~~  324 (615)
T 1pgu_A          323 FY  324 (615)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-36  Score=271.36  Aligned_cols=303  Identities=19%  Similarity=0.300  Sum_probs=251.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      ....+|...+.. +++++  +++|++|+.||.|++|++.+.     +.+|...|++++|+ +..+++++.|+.|++||++
T Consensus       112 ~~l~~h~~~v~~-~~~~~--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          112 KVLKGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETT
T ss_pred             EEecccCCCcEE-EEEEc--CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECC
Confidence            345678877644 35566  899999999999999999877     77899999999997 3355999999999999999


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      +++.+..+.+|...|.+++|+  ++.+++++.||.|++||+++++.+..+.+|...+.+++|  +++++++++.   |+.
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~  260 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY---DFM  260 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET---TSC
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC---CCE
Confidence            999999999999999999996  568999999999999999999999999999999999999  7889999998   999


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      |++||+++++.+..+..|...+.++.|  ++.++++++.||.|++||+++++.+..+. .+...+.++.+  +++++++|
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~  335 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSG  335 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEE
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEE
Confidence            999999999999999999999999999  78999999999999999999999988875 56677888877  46799999


Q ss_pred             eCCCeEEEEeCCCCceeeeee--------cceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEe-----------e
Q psy519          240 SLTGTVQFYGWPSASKIGIGV--------YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVE-----------S  300 (351)
Q Consensus       240 ~~dg~i~i~~~~~~~~~~~~~--------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~  300 (351)
                      +.||.|++||+++++.+....        +..+++  ++..+++++.++   .+++|+..+++.....           .
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~v  410 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG---TVKLWDLKTGEFIRNLVTLESGGSGGVV  410 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTS---EEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEEeCCC---eEEEEECCCCceeeeeeccccCCCCceE
Confidence            999999999999988776532        334555  567888888877   5667776666544322           1


Q ss_pred             EEEEecCCceeeccEEEecCC----ccccceee
Q psy519          301 FIVEIRPDKWYEANLIVLDDD----LKECNLET  329 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~  329 (351)
                      ..+.|+|++.+.... ..+..    +..|++..
T Consensus       411 ~~~~~s~~~~~la~~-~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          411 WRIRASNTKLVCAVG-SRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEECSSEEEEEEE-CSSSSSCCEEEEEECCC
T ss_pred             EEEEecCCEEEEEEc-ccCCCCccEEEEEECCC
Confidence            126788988765533 23333    55665543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-36  Score=261.93  Aligned_cols=276  Identities=21%  Similarity=0.273  Sum_probs=230.9

Q ss_pred             cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCe-----eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy519           46 TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMY-----PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  118 (351)
                      +.+|.+.|++++|+|+ +++ ++|+.|++|+|||+.+.+     +...+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            6799999999999997 566 899999999999987643     566788999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee-EEeccCCCCEEEEEECCCC--cEEEE
Q psy519          119 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFSPCG--KYLAS  195 (351)
Q Consensus       119 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~~  195 (351)
                      +............+...+..+.++++++++++++.   |+.+++||+...... .....|...+..++|++++  .++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999888888888899999999999999999999   999999998766443 3356788999999999865  57889


Q ss_pred             EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCc
Q psy519          196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGF  271 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~  271 (351)
                      ++.|+.|++||+++++.+..+. .|...|.+++|+|++++|++|+.||.|++||+++.+.+..    ..+..+.++|++.
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  269 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY  269 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS
T ss_pred             EcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc
Confidence            9999999999999999888775 5778999999999999999999999999999999887765    4556788999876


Q ss_pred             eeeeeeccceeeEEEeeeceeCc-----------------eEEEeeEEEEecCCceeeccEEEecCCccccceeeeee
Q psy519          272 EAATLAANSRVRTLREMHEIVGP-----------------VVVVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQ  332 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  332 (351)
                      .++ ++.++   .+++|+...+.                 ...+.+  +.|+|++.++... ..|..|++|+++++++
T Consensus       270 ~~~-~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~s~dg~~l~sg-s~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          270 WLC-AATGP---SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS--LAWSADGQTLFAG-YTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EEE-EEETT---EEEEEETTTTEEEEEECCC-------CCCCCEEE--EEECTTSSEEEEE-ETTSCEEEEEEEC---
T ss_pred             eee-ccCCC---EEEEEECCCCeEEEeccccceeeeccCCCCCEEE--EEECCCCCEEEEE-eCCCEEEEEeCCCcCC
Confidence            554 44555   46667654432                 223334  6899999887654 6788999999998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.8e-38  Score=271.41  Aligned_cols=285  Identities=15%  Similarity=0.176  Sum_probs=236.1

Q ss_pred             CCcCCCCccceEEeeecCCccc---cEEEEecCCCceEEEecCC-c------cCCCccceEEEEECCCCcE-EEEeCCCc
Q psy519            4 SHLNHGDHKHFIQNSFKPETVE---DVLANLESQKNLQSRYLPY-Y------TSGHDMTVWSVEACSKGLA-LTGSRDTT   72 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~---~~l~~~~~~~~i~i~~~~~-~------~~~~~~~i~~~~~~~~~~~-~~~~~d~~   72 (351)
                      ..+..+|...|.+++|+|+  +   ++|++++.||.|++|++.. .      ..+|...|.+++|+|++.+ ++++.|+.
T Consensus        32 ~~~~~~h~~~v~~~~~~~~--~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPP--TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             EECSSCCSSCEEEEEECCT--TSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eEeccCCCCceEEEEEcCC--CCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            3567889999999999999  6   8999999999999999986 2      6679999999999999987 99999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARF--HPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      |++||+++++.+. +..|...|.+++|  +|++++|++++.||.|++||+++++.+..+..+ ..+.++.+.  ...+++
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~  185 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVI--YPMAVV  185 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEE--TTEEEE
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEec--CCeeEE
Confidence            9999999988766 5579999999999  889999999999999999999999988888755 466667665  457777


Q ss_pred             EecCCCCCeEEEEEccCCceeEEe--ccCCCCEEEEEECCCCcE----EEEEcCCCeEEEEEcCCC---cEEEEeeccCC
Q psy519          151 GGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKY----LASGGEDGLVLTHELTTG---RVISRFHLQEH  221 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~  221 (351)
                      ++.   ++.+.+||++........  ..+......+.+.++...    +++++.||.|++||++..   .....+. .+.
T Consensus       186 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~  261 (368)
T 3mmy_A          186 ATA---ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHR  261 (368)
T ss_dssp             EEG---GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSE
T ss_pred             EeC---CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eee
Confidence            777   999999999876543332  223445666666655443    999999999999999887   3444443 222


Q ss_pred             C------------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeE
Q psy519          222 E------------PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       222 ~------------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      .            .|.+++|+|++++|++++.||.|++||+.+++.+..     ..+..++|+|++..+++++.++..+.
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence            2            699999999999999999999999999999987765     45678999999999999999998888


Q ss_pred             EEeeeceeCceEEE
Q psy519          285 LREMHEIVGPVVVV  298 (351)
Q Consensus       285 ~~~~~~~~g~~~~~  298 (351)
                      +++|+........+
T Consensus       342 ~~~~~~~~~~~i~~  355 (368)
T 3mmy_A          342 HEFYNPQKKNYIFL  355 (368)
T ss_dssp             GGGCCTTSCCEEEE
T ss_pred             ccccCCCccceeee
Confidence            88887666554433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=264.34  Aligned_cols=278  Identities=18%  Similarity=0.268  Sum_probs=238.5

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|...|++++|+|++.+ ++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  107 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ  107 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            5689999999999999987 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCC-----CeEEEEEccCCc-----------eeEEeccCCC--CEEEEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD-----KAVRLWSITDGA-----------SVRVFSDHVS--PVLSIAF  186 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d-----~~i~i~d~~~~~-----------~~~~~~~~~~--~i~~~~~  186 (351)
                      .+..+. +...+.+++|+|+++++++++.   +     +.|++||++.+.           ....+..|..  .+.+++|
T Consensus       108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          108 CVATWK-SPVPVKRVEFSPCGNYFLAILD---NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEEEC---CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             EEEEee-cCCCeEEEEEccCCCEEEEecC---CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            988887 8899999999999999999987   7     999999998653           3344445555  8999999


Q ss_pred             CCCCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eec
Q psy519          187 SPCGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVY  261 (351)
Q Consensus       187 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~  261 (351)
                      +|++++|++++.||.|++||+++ .+.+..+. .+...|.+++|+|++++|++++.||.|++||+.+++.+..    ..+
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  262 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL  262 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence            99999999999999999999998 56666664 5678999999999999999999999999999999887765    456


Q ss_pred             ceeEEecCCceeeeeeccceee-----------EEEeeeceeCceE--------EEeeEEEEecCCceeeccEEEecCCc
Q psy519          262 PRCAAQPVGFEAATLAANSRVR-----------TLREMHEIVGPVV--------VVESFIVEIRPDKWYEANLIVLDDDL  322 (351)
Q Consensus       262 ~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i  322 (351)
                      ..+.|+|++..++++..++...           .+++|+..++...        .+.+  +.|+|++.++... ..+..+
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~s~-~~dg~v  339 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT--VAISPQGTSYASG-GEDGFI  339 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE--EEECTTSSEEEEE-ETTSEE
T ss_pred             eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE--EEECCCCCEEEEE-cCCCeE
Confidence            6799999999999988776322           5777877655433        2333  6899999877654 578889


Q ss_pred             cccceeeee
Q psy519          323 KECNLETYS  331 (351)
Q Consensus       323 ~~~~~~~~~  331 (351)
                      +.|+++...
T Consensus       340 ~iw~~~~~~  348 (369)
T 3zwl_B          340 RLHHFEKSY  348 (369)
T ss_dssp             EEEEECHHH
T ss_pred             EEEECcccc
Confidence            999997654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-36  Score=282.93  Aligned_cols=308  Identities=12%  Similarity=0.069  Sum_probs=247.5

Q ss_pred             CCCCccceEEeeecCCcccc-EEEEecCCCceEEEecCCc-----cCCCcc---ceEEEEECCC-CcE-EEEeCCCcEEE
Q psy519            7 NHGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY-----TSGHDM---TVWSVEACSK-GLA-LTGSRDTTARL   75 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~-----~~~~~~---~i~~~~~~~~-~~~-~~~~~d~~i~v   75 (351)
                      ..+|...|.+++|+|+  ++ +|++++.|+.|++|++...     +.+|..   .|.+++|+|+ +.+ ++++.|+.|++
T Consensus       156 ~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          156 VSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  233 (615)
T ss_dssp             CCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             eecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            4578999999999999  87 8999999999999999876     667888   9999999999 887 89999999999


Q ss_pred             EeCCCCeeeEEe-e---CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC----CCCeEEEEEccCCCE
Q psy519           76 WSLEQMYPLRIF-V---GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH----VSPVLSIAFSPCGKY  147 (351)
Q Consensus        76 w~~~~~~~~~~~-~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~  147 (351)
                      ||+.+++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+    ...+.++.|+ ++++
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  311 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR  311 (615)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred             EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence            999999999888 6   899999999999 9999999999999999999999988888765    3678888886 8899


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCC---------------------------------CcEEE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---------------------------------GKYLA  194 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------~~~l~  194 (351)
                      +++++.   |+.|++||+++++.+..+..|..+|.+++| |+                                 +..++
T Consensus       312 l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~  387 (615)
T 1pgu_A          312 IISLSL---DGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS  387 (615)
T ss_dssp             EEEEET---TSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred             EEEEEC---CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence            999998   999999999888777777666665555555 33                                 33444


Q ss_pred             EE-------------------------------------------------------------------------cC-CC
Q psy519          195 SG-------------------------------------------------------------------------GE-DG  200 (351)
Q Consensus       195 ~~-------------------------------------------------------------------------~~-dg  200 (351)
                      ++                                                                         +. |+
T Consensus       388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~  467 (615)
T 1pgu_A          388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN  467 (615)
T ss_dssp             EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred             EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence            44                                                                         44 45


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEec------
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQP------  268 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~------  268 (351)
                      .|++||+.+++........+...|.+++|+|++++|++++.||.|++||+.+++.+..      ..+..++|+|      
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  547 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  547 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccc
Confidence            5555555443332111224557899999999999999999999999999999887754      4567899999      


Q ss_pred             ----CCceeeeeeccceeeEEEeeeceeC---------ceEEEeeEEEEecCCceeeccEEEecCCccccceee
Q psy519          269 ----VGFEAATLAANSRVRTLREMHEIVG---------PVVVVESFIVEIRPDKWYEANLIVLDDDLKECNLET  329 (351)
Q Consensus       269 ----~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  329 (351)
                          ++..+++++.++.   +++|+...+         |...+.+  +.|+|++. +. ....+..++.|++++
T Consensus       548 ~~~~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~h~~~v~~--l~~s~~~~-l~-s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          548 EEEIEEDLVATGSLDTN---IFIYSVKRPMKIIKALNAHKDGVNN--LLWETPST-LV-SSGADACIKRWNVVL  614 (615)
T ss_dssp             --CCSCCEEEEEETTSC---EEEEESSCTTCCEEETTSSTTCEEE--EEEEETTE-EE-EEETTSCEEEEEEC-
T ss_pred             ccccCCCEEEEEcCCCc---EEEEECCCCceechhhhcCccceEE--EEEcCCCC-eE-EecCCceEEEEeeec
Confidence                9999999998884   555555544         3333444  78999998 43 335788899999865

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-36  Score=271.33  Aligned_cols=268  Identities=18%  Similarity=0.281  Sum_probs=233.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEEC--CCCcE-EEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEAC--SKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~--~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ..+|...|.+++|+|+  + +|++++.||.|++||+.+.     +.+|...|.+++|+  +++.+ ++++.|+.|++||+
T Consensus       158 ~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~  234 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHG--G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  234 (464)
T ss_dssp             ECCCSSCEEEEEECST--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC
T ss_pred             EeCCCcCEEEEEEcCC--C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC
Confidence            4589999999999999  7 8999999999999999887     67899999999998  56666 99999999999999


Q ss_pred             CCCee-----------------------eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCC
Q psy519           79 EQMYP-----------------------LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP  135 (351)
Q Consensus        79 ~~~~~-----------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  135 (351)
                      .+++.                       ...+.+|...+.++  +++++++++++.||.|++||+++++.+..+.+|...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  312 (464)
T 3v7d_B          235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  312 (464)
T ss_dssp             CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence            87652                       44667888888877  567889999999999999999999999999999999


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      |.+++|+|+++++++++.   |+.|++||+++++.+..+..|...|.+++|+  ++++++++.||.|++||++++.....
T Consensus       313 v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASM---DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EEEEEEETTTTEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            999999999999999999   9999999999999999999999999999997  58999999999999999998876665


Q ss_pred             eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       216 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      .  .+...+..++|+++++++++++ ||.|++||+++++.+..      ..+..++|+  +..+++++.++....+.+++
T Consensus       388 ~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          388 Y--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             E--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred             e--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEee
Confidence            5  4556788899999999999998 89999999999988864      455667775  66666666666566666655

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.2e-37  Score=269.70  Aligned_cols=246  Identities=18%  Similarity=0.264  Sum_probs=212.3

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC-CC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE-QM   81 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~-~~   81 (351)
                      ..|...|.+++|+|+  +++|++++.||.|++|++...     +.+|...|.+++|++ ..+++++.|+.|++||+. ..
T Consensus       131 ~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          131 TDESTYVASVKWSHD--GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             CCTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSS
T ss_pred             cCCCCCEEEEEECCC--CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCc
Confidence            347899999999999  999999999999999999876     678999999999943 244999999999999998 56


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE-EEEEecCCCCCeE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY-LASGGTGSYDKAV  160 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~d~~i  160 (351)
                      ..+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++.. +++++ ++.|+.|
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i  286 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQI  286 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEE
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEE
Confidence            677888899999999999999999999999999999999999999999899999999999997755 45543 2239999


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEE--EcCCCeEEEEEcCCCcEEEEeec-cCCCCEEEEEEcCCCCEEE
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS--GGEDGLVLTHELTTGRVISRFHL-QEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~  237 (351)
                      ++||+++++.+..+. +...+.+++|+|+++++++  |+.||.|++||+.+++....... .|...|.+++|+|++++|+
T Consensus       287 ~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          287 HFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS  365 (401)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred             EEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEE
Confidence            999999999888885 5678999999999999998  44899999999998766655432 4568899999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeee
Q psy519          238 TGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      +++.||.|++|++.+++.+..
T Consensus       366 s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          366 TAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EECTTSEEEEEECCC------
T ss_pred             EEeCCCcEEEEECCCCccccc
Confidence            999999999999998876643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.5e-36  Score=267.88  Aligned_cols=265  Identities=22%  Similarity=0.356  Sum_probs=227.9

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ...|+||++   ++||+| .|++|+|||..++       ..+|...|++++|+|+|.+ ++|+.|+.|++||+++++.+.
T Consensus       108 ~~~l~wS~~---n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          108 LNLVDWSSG---NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CBCEEECTT---SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceeEEECCC---CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            456899976   477776 4899999999887       4578889999999999988 999999999999999999999


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      .+.+|...+.++.++  +..+++++.|+.+++||.... ..+..+.+|...+..+.++|+++++++++.   |+.+++||
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~---D~~v~i~~  258 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN---DNLVNVWP  258 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec---cccceEEe
Confidence            999999999998886  579999999999999998864 456778889999999999999999999999   99999999


Q ss_pred             ccCCc----eeEEeccCCCCEEEEEECCCC-cEEEE--EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          165 ITDGA----SVRVFSDHVSPVLSIAFSPCG-KYLAS--GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       165 ~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      ..+++    .+.....|...|.+++|+|++ .++++  |+.|+.|++||+.+++....+.  .+..+.++.|+|+++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv  336 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELI  336 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEE
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEE
Confidence            98764    356677899999999999965 45554  4579999999999999888774  456899999999999888


Q ss_pred             EEe--CCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          238 TGS--LTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       238 ~~~--~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +++  .|+.|++||+++++.+..     ..+..++|+|+|..+++++.|+.++.|++++
T Consensus       337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            765  689999999999988865     4677899999999999999988655544443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=296.89  Aligned_cols=308  Identities=12%  Similarity=0.071  Sum_probs=231.2

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc----------------cCCCccceEEEEECCCC--cEEEEeCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------------TSGHDMTVWSVEACSKG--LALTGSRDT   71 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------------~~~~~~~i~~~~~~~~~--~~~~~~~d~   71 (351)
                      |...|.+++|+|+  +++|++|+.||.|++||+...                ..+|.+.|++++|+|++  .+++++.|+
T Consensus        97 ~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg  174 (902)
T 2oaj_A           97 VPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV  174 (902)
T ss_dssp             CSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred             CCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence            5678999999999  999999999999999999765                24688999999999974  449999999


Q ss_pred             cEEEEeCCCCeeeEEeeCC------------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE--ec-
Q psy519           72 TARLWSLEQMYPLRIFVGH------------------KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV--FS-  130 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~-  130 (351)
                      .| +||+++++.+..+..|                  ...|.+++|+|++++|++++.||.|++||+++++.+..  +. 
T Consensus       175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~  253 (902)
T 2oaj_A          175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE  253 (902)
T ss_dssp             EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred             cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence            99 9999999988887665                  46799999999999999999999999999999887653  21 


Q ss_pred             --c-------------CCCCeEEEEEc----cCC-CEEEEEecCC-----------------------------------
Q psy519          131 --D-------------HVSPVLSIAFS----PCG-KYLASGGTGS-----------------------------------  155 (351)
Q Consensus       131 --~-------------~~~~i~~~~~~----~~~-~~l~~~~~~~-----------------------------------  155 (351)
                        .             +..+|.+++|+    |++ .++++++...                                   
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~  333 (902)
T 2oaj_A          254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ  333 (902)
T ss_dssp             SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred             cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence              1             24479999995    433 3455553200                                   


Q ss_pred             --------------------------------------CCCeEEEEEccCCceeEE------------------------
Q psy519          156 --------------------------------------YDKAVRLWSITDGASVRV------------------------  173 (351)
Q Consensus       156 --------------------------------------~d~~i~i~d~~~~~~~~~------------------------  173 (351)
                                                            .|+.|++||+.++.....                        
T Consensus       334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~  413 (902)
T 2oaj_A          334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP  413 (902)
T ss_dssp             EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred             eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence                                                  024455565544422111                        


Q ss_pred             -----------------eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE----EEeec------cCCCCEEE
Q psy519          174 -----------------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI----SRFHL------QEHEPVTS  226 (351)
Q Consensus       174 -----------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~------~~~~~v~~  226 (351)
                                       +.+|...+..++|+|++++|++|+.|+.|++||+.++...    .....      .|...|.+
T Consensus       414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s  493 (902)
T 2oaj_A          414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK  493 (902)
T ss_dssp             HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred             HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE
Confidence                             1122223334556789999999999999999999877421    11111      45678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------------------------------e-----
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPSASK---------------------------------------------I-----  256 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---------------------------------------------~-----  256 (351)
                      ++|+|++++||+|+.||+|++|++.+++.                                             +     
T Consensus       494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  573 (902)
T 2oaj_A          494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA  573 (902)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred             EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence            99999999999999999999999976621                                             2     


Q ss_pred             eeeecceeEEecCCceeeeeeccceeeEEEeeecee--------------CceEEEeeEEEEec-----CCc---eeecc
Q psy519          257 GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV--------------GPVVVVESFIVEIR-----PDK---WYEAN  314 (351)
Q Consensus       257 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~-----~~~---~~~~~  314 (351)
                      +...+.+++|||+| .+|+++.++.+   ++|+...              ||...+.+  +.|+     ||+   .++..
T Consensus       574 h~~~V~svafSpdG-~lAsgs~D~tv---~lwd~~~~~~~~~~~~~~~~~gh~~~V~s--v~Fs~~~~~~Dg~~~~~l~s  647 (902)
T 2oaj_A          574 NKGKTSAINNSNIG-FVGIAYAAGSL---MLIDRRGPAIIYMENIREISGAQSACVTC--IEFVIMEYGDDGYSSILMVC  647 (902)
T ss_dssp             CSCSEEEEEECBTS-EEEEEETTSEE---EEEETTTTEEEEEEEGGGTCSSCCCCEEE--EEEEEEECTTSSSEEEEEEE
T ss_pred             CCCcEEEEEecCCc-EEEEEeCCCcE---EEEECCCCeEEEEeehhHhccccccceEE--EEEEEEecCCCCCcceEEEE
Confidence            22566789999999 99999988755   4555433              45555666  7899     886   44433


Q ss_pred             EEEecCCccccce
Q psy519          315 LIVLDDDLKECNL  327 (351)
Q Consensus       315 ~~~~~~~i~~~~~  327 (351)
                      . ..+.+++.|++
T Consensus       648 g-s~D~tv~~wd~  659 (902)
T 2oaj_A          648 G-TDMGEVITYKI  659 (902)
T ss_dssp             E-ETTSEEEEEEE
T ss_pred             E-ecCCcEEEEEE
Confidence            3 57889999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-36  Score=265.18  Aligned_cols=275  Identities=18%  Similarity=0.162  Sum_probs=223.1

Q ss_pred             cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEee--CCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFV--GHKQDVTCARFHP-KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|...|++++|+|++ .+ ++++.|+.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|++||+
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF  148 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence            56899999999999998 66 999999999999999887776665  6999999999999 7899999999999999999


Q ss_pred             CCCceeEEecc---CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCc-EEEEE
Q psy519          121 TDGASVRVFSD---HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASG  196 (351)
Q Consensus       121 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  196 (351)
                      +. +.+..+..   +...|.+++|+|++++|++++.   |+.|++||+ +++.+..+..|...|.+++|+|+++ +++++
T Consensus       149 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          149 SG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             TS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             CC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            85 44555543   3478999999999999999999   999999999 5778888999999999999999998 99999


Q ss_pred             cCCCeEEEEEcCC----CcEEEEeeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeee-----------
Q psy519          197 GEDGLVLTHELTT----GRVISRFHLQEHEPVTSLVWSV-TGETLVTGSLTGTVQFYGWPSASKIGIGV-----------  260 (351)
Q Consensus       197 ~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----------  260 (351)
                      +.|+.|++||+++    +..+..+  .+...|.+++|+| ++++|++++.|+.|++||+.+++......           
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence            9999999999987    5566655  5778999999999 99999999999999999999876543311           


Q ss_pred             cceeEEecCCceeeeee------ccceeeEEEeeeceeCceEEEee--------EEEEecCCceeeccEEEecCCccccc
Q psy519          261 YPRCAAQPVGFEAATLA------ANSRVRTLREMHEIVGPVVVVES--------FIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      ...+.|+|++..++++.      +.+.++.+++|+..+++......        ..+.|+|++.++...  .+..++.|+
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~--sd~~i~iw~  379 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG--MGFNILIWN  379 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE--ETTEEEEEE
T ss_pred             ceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe--cCCcEEEEe
Confidence            11234444444433322      33456678889887776543332        124899999988666  388899998


Q ss_pred             eee
Q psy519          327 LET  329 (351)
Q Consensus       327 ~~~  329 (351)
                      +++
T Consensus       380 ~~~  382 (383)
T 3ei3_B          380 RED  382 (383)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-36  Score=263.81  Aligned_cols=277  Identities=12%  Similarity=0.038  Sum_probs=229.6

Q ss_pred             CCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe--eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           48 GHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        48 ~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      .|..+|++++|+|++.+ ++++.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            48899999999999988 888899999999999987  888899999999999999999999999999999999998887


Q ss_pred             eeEE--eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce----eEEeccCCCCEEEEEECCCCcEEEEEcC
Q psy519          125 SVRV--FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       125 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      ....  +..|...|.+++|+|++++|++++.   |+.|++||++.++.    ......|...|.+++|+|++++|++++.
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEET---TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            5443  3668899999999999999999998   99999999998763    2333568899999999999999999999


Q ss_pred             CCeEEEEEcC------------------CCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--
Q psy519          199 DGLVLTHELT------------------TGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--  258 (351)
Q Consensus       199 dg~i~i~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--  258 (351)
                      ||.|++||++                  .++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++.+..  
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            9999999953                  567777665 5668899999999999999999999999999998887754  


Q ss_pred             ---eecceeEEecCCceeeeeeccceeeEEEeee----------------------------------------------
Q psy519          259 ---GVYPRCAAQPVGFEAATLAANSRVRTLREMH----------------------------------------------  289 (351)
Q Consensus       259 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  289 (351)
                         ..+..++|+|++..++++ .++.+..|.+-.                                              
T Consensus       242 ~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (372)
T 1k8k_C          242 SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  320 (372)
T ss_dssp             CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence               356789999999988877 777665554433                                              


Q ss_pred             ceeCceEEEeeEEEE-ecCCc---eeeccEEEecCCccccceeeeee
Q psy519          290 EIVGPVVVVESFIVE-IRPDK---WYEANLIVLDDDLKECNLETYSQ  332 (351)
Q Consensus       290 ~~~g~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~i~~~~~~~~~~  332 (351)
                      ...+|...+.+  +. +++++   .+.... ..|..++.|++++..+
T Consensus       321 ~~~~h~~~v~~--~~~~~~~g~~~~~l~s~-~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          321 LDSLHKNSVSQ--ISVLSGGKAKCSQFCTT-GMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CSSSSSSCEEE--EEEEESTTTSCSEEEEE-ETTSEEEEEEHHHHHH
T ss_pred             ccccccCCcce--eEEecCCCcceeeEEEe-cCCCceEEEEecChhH
Confidence            00244445555  44 44665   555544 5788899999877544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.1e-37  Score=268.16  Aligned_cols=238  Identities=17%  Similarity=0.229  Sum_probs=208.6

Q ss_pred             CCccceEEeeecCCcc--ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCC
Q psy519            9 GDHKHFIQNSFKPETV--EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~--~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~   79 (351)
                      .|...|.+++|+|+..  +.+|++++.||.|++|++.+.     +.+|...|.+++|+| ++.+ ++++.|+.|++||++
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            3678899999999822  358999999999999999877     668999999999999 8877 999999999999999


Q ss_pred             CCeeeEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec--------------------------
Q psy519           80 QMYPLRIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS--------------------------  130 (351)
Q Consensus        80 ~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------  130 (351)
                      +++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++++....+.                          
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            99988888   6899999999999999999999999999999999876554333                          


Q ss_pred             --cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce--------------eEEeccCCCCEEEEEECCC--CcE
Q psy519          131 --DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS--------------VRVFSDHVSPVLSIAFSPC--GKY  192 (351)
Q Consensus       131 --~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~~~~~~~--~~~  192 (351)
                        .|...|.+++|+  ++++++++.   |+.|++||+++++.              +..+..|...|.+++|+|+  +++
T Consensus       227 ~~~~~~~v~~~~~~--~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          227 RDIHRNYVDCVRWL--GDLILSKSC---ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             CSSCSSCCCEEEEE--TTEEEEECS---SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             ccCCcceEEEEEEc--CCEEEEEec---CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence              388999999998  779999998   99999999988744              7778889999999999999  999


Q ss_pred             EEEEcCCCeEEEEEcCCCcE----EEEeeccC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          193 LASGGEDGLVLTHELTTGRV----ISRFHLQE--HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      |++++.||.|++||+.+++.    ...+. .+  ...|.+++|+|++++|++++.||.|++||+.+
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99999999999999998753    33443 33  58999999999999999999999999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.7e-36  Score=259.48  Aligned_cols=272  Identities=10%  Similarity=0.067  Sum_probs=214.8

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCe
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~   82 (351)
                      .+|...|.+++|+|+  |++|++|+.++ +++|++...   ...+...+..+++.+++.+  ++++.|++|++||+.+++
T Consensus        16 ~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             ---CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             ccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            678999999999999  99999998775 789998876   2222234777888887765  567888999999999999


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEeccCCCCeEEEEEccCCCEEEEE--ecCCCCCe
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG-ASVRVFSDHVSPVLSIAFSPCGKYLASG--GTGSYDKA  159 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~~~~d~~  159 (351)
                      .+..+. +...|.+++++++.  ++++ .++.|++||+.++ +.+..+..   +...+++++  .+++++  +.   +|.
T Consensus        93 ~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~---~g~  160 (355)
T 3vu4_A           93 DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN---LGQ  160 (355)
T ss_dssp             EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC---TTC
T ss_pred             EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc---CcE
Confidence            988886 66789999998764  4444 3789999999988 66666554   445567777  666664  55   999


Q ss_pred             EEEEEccCCc----------------eeEEeccCCCCEEEEEECCCCcEEEEEcCCCe-EEEEEcCCCcEEEEeecc-CC
Q psy519          160 VRLWSITDGA----------------SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL-VLTHELTTGRVISRFHLQ-EH  221 (351)
Q Consensus       160 i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~-~~  221 (351)
                      |++||+++++                .+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++.+..+... |.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9999998765                26778899999999999999999999999998 999999999999988633 77


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----------------------------eecceeEEecCCcee
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----------------------------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----------------------------~~~~~~~~s~~~~~~  273 (351)
                      ..|.+++|+|++++|++++.|+.|++||++.+.....                            .....++|+|++..+
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l  320 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV  320 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence            8999999999999999999999999999976532111                            011567899999999


Q ss_pred             eeeeccceeeEEEeeeceeCc
Q psy519          274 ATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ++++.++....+.+.....++
T Consensus       321 ~~~~~dg~~~~~~~~~~~~~~  341 (355)
T 3vu4_A          321 VVWPHTRMIETFKVVFDDEME  341 (355)
T ss_dssp             EEETTTTEEEEEEEEEETTTT
T ss_pred             EEEeCCCeEEEEEEEcCCCCc
Confidence            999988866655554444443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=275.11  Aligned_cols=251  Identities=9%  Similarity=0.023  Sum_probs=205.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      +.-...|.+++||||  |+++|+++.|++|+  +....  ..+|...|++++|+|+|      .++.+.+|+.+..+ ..
T Consensus        12 ~~~~~~v~sv~~SpD--G~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~-~~   80 (588)
T 2j04_A           12 KEFEDWKNNLTWARD--GTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE------FENKLDFELAQQNG-LL   80 (588)
T ss_dssp             CCCSSSSCCEEECTT--SCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSSC-SS
T ss_pred             hHhhccEEEEEECCC--CCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC------CcceEEEEeCCCce-Ee
Confidence            334578899999999  99999999999999  64444  67999999999999998      45665555543222 22


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCC-----CeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS-----PVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      .+ .|...|.+++|+|+|+.|++++.||.|++||...  .+..+. |..     .+.+++|||+|++|++|+.   ||.|
T Consensus        81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---DGtV  153 (588)
T 2j04_A           81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---DGEL  153 (588)
T ss_dssp             TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---TSEE
T ss_pred             ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---CCEE
Confidence            22 4578899999999999999999999999999544  666666 655     4999999999999999999   9999


Q ss_pred             EEEEccCCce-------eEEe----ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE---EEEeeccCCCCEEE
Q psy519          161 RLWSITDGAS-------VRVF----SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV---ISRFHLQEHEPVTS  226 (351)
Q Consensus       161 ~i~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~  226 (351)
                      ++||+.++..       +..+    .+|...|.+++|+|||  +++++.|+.+++||+..+..   ...+...|...|.+
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            9999998752       5665    5677899999999999  78888899999999987773   23443345678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEE--ecCCceeeeeeccce
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAA--QPVGFEAATLAANSR  281 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~--s~~~~~~~~~~~~~~  281 (351)
                      ++|+  ++.||+++ ++.|++||+.+++....     ..+..+++  +|++..++++..+|.
T Consensus       232 vaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          232 LKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             EEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            9999  68999987 69999999998877332     46778999  999999998887876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.5e-37  Score=263.85  Aligned_cols=239  Identities=19%  Similarity=0.262  Sum_probs=197.3

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe--eeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY--PLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|.+.|++++|+|+|++ ++|+.|++|++||+.+++  .+..+.+|...|.+++|+|  ++++|++++.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            5689999999999999987 999999999999998764  4677889999999999986  4889999999999999999


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCCce---eEEeccCCCCEEEEEECCC----
Q psy519          121 TDGA--SVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPC----  189 (351)
Q Consensus       121 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~----  189 (351)
                      ++++  ....+.+|...|.+++|+|+  +.+|++++.   |+.|++||++.+..   ...+..|...+.+++|+|+    
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~---D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS---DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS---SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC---CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            8874  56677889999999999997  789999998   99999999987632   3445678889999999997    


Q ss_pred             -------------CcEEEEEcCCCeEEEEEcCCC---cEEEEeeccCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEe
Q psy519          190 -------------GKYLASGGEDGLVLTHELTTG---RVISRFHLQEHEPVTSLVWSVTG----ETLVTGSLTGTVQFYG  249 (351)
Q Consensus       190 -------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~~  249 (351)
                                   +++|++++.|+.|++||++..   +.+..+. .|...|.+++|+|++    ++|++++.|++|++|+
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                         478999999999999999755   2344443 566889999999986    8999999999999999


Q ss_pred             CCCC-------ceee--eeecceeEEecCCceeeeeeccceeeEEEeeece
Q psy519          250 WPSA-------SKIG--IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       250 ~~~~-------~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                      +.+.       +.+.  ...+..++|+|++..+++++.++.   +++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~---v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK---VTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC---EEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe---EEEEEEC
Confidence            8762       1222  256778999999999999988875   5566543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.3e-37  Score=273.40  Aligned_cols=280  Identities=17%  Similarity=0.145  Sum_probs=219.7

Q ss_pred             cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCee--eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYP--LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~  120 (351)
                      ..+|...|++++|+|. +.+ ++|+.||.|+|||+.+++.  ...+.+|...|++++|+| ++++|++++.||+|++||+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            4467888999999995 444 9999999999999987654  344568999999999998 6889999999999999999


Q ss_pred             CCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCc-EEEEEc
Q psy519          121 TDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK-YLASGG  197 (351)
Q Consensus       121 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  197 (351)
                      +++.......  .+...+.+++|+|++++|++|+.   |+.|++||++ ++.+..+..|...|.+++|+|++. ++++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN---VGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS---SSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC---CCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEec
Confidence            8765433332  23456789999999999999998   9999999986 456777889999999999999875 788999


Q ss_pred             CCCeEEEEEcCCCcEEEEee--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----------eccee
Q psy519          198 EDGLVLTHELTTGRVISRFH--LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG-----------VYPRC  264 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----------~~~~~  264 (351)
                      .|+.|++||+++.+....+.  ..|...|.+++|+|+|++|++++.||.|++||+.+++.....           .....
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            99999999998876543332  246678999999999999999999999999999987655431           22346


Q ss_pred             EEecCCceeeeeeccc---------eeeEEEeeeceeCceEEEee--------EEEEecCCceeeccEEEecCCccccce
Q psy519          265 AAQPVGFEAATLAANS---------RVRTLREMHEIVGPVVVVES--------FIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       265 ~~s~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                      .|+|++..++++....         ..+.+++|+..+|+......        ....|+|++.++...  .++.|++|++
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg--~d~~i~iW~~  428 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA--MGYHILIWSQ  428 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE--CSSEEEECCC
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE--cCCcEEEEEC
Confidence            7888887776654322         33578999988877554321        123699999887643  5788999999


Q ss_pred             eeee
Q psy519          328 ETYS  331 (351)
Q Consensus       328 ~~~~  331 (351)
                      +.+.
T Consensus       429 ~~gk  432 (435)
T 4e54_B          429 QEAR  432 (435)
T ss_dssp             C---
T ss_pred             CcCe
Confidence            8754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.6e-36  Score=265.63  Aligned_cols=264  Identities=18%  Similarity=0.339  Sum_probs=227.0

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      .+|...|.+++|  +  +++|++|+.||.|++||+.+.     +.+|...|.+++|  ++.+ ++|+.||.|++||++++
T Consensus       130 ~~~~~~v~~~~~--d--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          130 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCcEEEEEE--C--CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            356678888887  6  899999999999999999876     7789999999999  5555 99999999999999999


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee---EEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV---RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      +.+..+.+|...|.+++|++  ..+++++.||.|++||+++++..   ..+.+|...|.+++|  +++++++++.   |+
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~---dg  276 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG---DR  276 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET---TS
T ss_pred             cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC---CC
Confidence            99999999999999999974  59999999999999999987765   667789999999999  7889999999   99


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                      .|++||+++++.+..+..|...+.++.|  +++++++|+.||.|++||+++++.+..+. .|...|.+++|  ++.+|++
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEE
Confidence            9999999999999999999999999999  47899999999999999999999988886 56788999998  7899999


Q ss_pred             EeCCCeEEEEeCCCCc---------eeee-----eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          239 GSLTGTVQFYGWPSAS---------KIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~---------~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      |+.||.|++||+.+++         .+..     ..+..++|  ++..+++++.++   .+++|+...+.
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg---~i~iwd~~~~~  416 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD---TILIWDFLNDP  416 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS---EEEEEC-----
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC---EEEEEECCCCC
Confidence            9999999999987654         3332     45566777  778888887776   56677765544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-35  Score=262.52  Aligned_cols=268  Identities=22%  Similarity=0.367  Sum_probs=239.2

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM   81 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~   81 (351)
                      ..+|...|.+++|+    +++|++++.||.|++|++.+.     +.+|...|.++.|++ ..+++++.|+.|++||+.++
T Consensus       155 ~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          155 LVGHTGGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             CCCCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSC
T ss_pred             EcCCCCCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCC
Confidence            46899999999997    568999999999999999877     678999999999963 34599999999999999999


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +.+..+.+|...+.+++|  +++.+++++.||.|++||+++++.+..+.+|...|.+++|  +++++++++.   |+.|+
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---d~~i~  302 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL---DTSIR  302 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET---TSCEE
T ss_pred             cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC---CCeEE
Confidence            999999999999999999  6789999999999999999999999999999999999999  7899999999   99999


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCEEEEEEcCCCCEEEEE
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      +||+++++.+..+..|...+.++.++  ++++++++.||.|++||+++++.+..+..  .+...|.+++|+  +++|++|
T Consensus       303 i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  378 (445)
T 2ovr_B          303 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS  378 (445)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             EEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence            99999999999999999999888874  67999999999999999999998888763  255789999995  6899999


Q ss_pred             eCCCeEEEEeCCCCceeeee----------ecceeEEecCCceeeeeeccce-eeEEEeeec
Q psy519          240 SLTGTVQFYGWPSASKIGIG----------VYPRCAAQPVGFEAATLAANSR-VRTLREMHE  290 (351)
Q Consensus       240 ~~dg~i~i~~~~~~~~~~~~----------~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~  290 (351)
                      +.||.|++||+.+++.+...          .+..++|+|++..+++++.++. ...+.+|+.
T Consensus       379 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          379 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            99999999999999877643          4678999999999999999986 444666653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.1e-35  Score=248.53  Aligned_cols=263  Identities=21%  Similarity=0.340  Sum_probs=223.2

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeE
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLR   85 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~   85 (351)
                      ...|+|||+  + +||+| .|++|++||+.++       ..+|...|++++|+|++++ ++|+.|++|++|++++++.+.
T Consensus        28 ~~~l~WS~~--~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           28 LNLVDWSSG--N-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             CBCEEECTT--S-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ceEEEECCC--C-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence            356899988  6 67766 5899999999876       4578889999999999988 999999999999999999999


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        86 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      .+.+|...+.++.+.  +..+++++.++.+++|+..... .+..+.+|...+..+.++++++++++++.   |+.|++||
T Consensus       104 ~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd  178 (318)
T 4ggc_A          104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN---DNLVNVWP  178 (318)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             EecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec---CcceeEEE
Confidence            999999988876654  6799999999999999988754 55677889999999999999999999999   99999999


Q ss_pred             ccCCc----eeEEeccCCCCEEEEEECCCCc-E--EEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          165 ITDGA----SVRVFSDHVSPVLSIAFSPCGK-Y--LASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       165 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      +++++    .......+...+..+.++|++. .  +++++.++.|++||.+........  .+...+..+.|+|+++.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~  256 (318)
T 4ggc_A          179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELI  256 (318)
T ss_dssp             SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEE
T ss_pred             CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceE
Confidence            98764    3445567888999999999664 3  345677899999999988877655  4567899999999999887


Q ss_pred             EEe--CCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          238 TGS--LTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       238 ~~~--~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      +++  .|+.|++||+++++.+..     ..+.+++|+|+|..+++++.|+.   +++|+.
T Consensus       257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~---v~iWd~  313 (318)
T 4ggc_A          257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET---LRLWRC  313 (318)
T ss_dssp             EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE---EEEECC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe---EEEEEC
Confidence            654  799999999999988765     56778999999999999998885   555554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=268.16  Aligned_cols=243  Identities=15%  Similarity=0.235  Sum_probs=201.7

Q ss_pred             CCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe-----------eeEEeeCCC------------CCeEEEEEeCC
Q psy519           47 SGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY-----------PLRIFVGHK------------QDVTCARFHPK  102 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~i~~i~~~~~  102 (351)
                      ..+.+.|++++|+|+|.+ ++|+.||.|+||++.+++           ....+.+|.            ..|.+++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            357899999999999988 999999999999998876           477888998            88999999999


Q ss_pred             C--CEEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eccCCCCeEEEE
Q psy519          103 I--TYIGTGSYDKAVRLWSITDGASV---------------------------------------RV-FSDHVSPVLSIA  140 (351)
Q Consensus       103 ~--~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~i~~~~  140 (351)
                      +  ..|++++.|+.|++||+.+++..                                       .. ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  79999999999999998764432                                       12 357999999999


Q ss_pred             EccCCCEEEEEecCCCCCeEEEEEccCC-ceeE-------EeccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCc
Q psy519          141 FSPCGKYLASGGTGSYDKAVRLWSITDG-ASVR-------VFSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGR  211 (351)
Q Consensus       141 ~~~~~~~l~~~~~~~~d~~i~i~d~~~~-~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  211 (351)
                      |+|++++|+++ .   |+.|++||+++. +.+.       .+..|...|.+++|+|++ ++|++++.||.|++||+++++
T Consensus       185 ~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          185 INSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             ECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999998 6   999999999843 3333       255789999999999998 999999999999999999887


Q ss_pred             E----EEEeeccCCC------------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cceeeeeecc------------
Q psy519          212 V----ISRFHLQEHE------------PVTSLVWSVTGETLVTGSLTGTVQFYGWPS-ASKIGIGVYP------------  262 (351)
Q Consensus       212 ~----~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~------------  262 (351)
                      .    ...+. .+..            .|.+++|+|++++|++++. +.|++||++. ++.+.....+            
T Consensus       261 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          261 LCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             cccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence            6    56554 3333            8999999999999999998 9999999987 6655443222            


Q ss_pred             --------eeEEecCCceeeeeeccceeeEEEeeeceeCceEEE
Q psy519          263 --------RCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       263 --------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                              .++|+|++..+++++.++   .+++|+..+++...+
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKRDITL  379 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCCEEEE
T ss_pred             ccccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCcceee
Confidence                    289999999998888876   677888877775543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=279.76  Aligned_cols=273  Identities=9%  Similarity=0.018  Sum_probs=213.6

Q ss_pred             CCCccceEEeeecCC----ccccEEEEecCCCceEEEecCCc----------------cCCCccceEEEEECCCCcEEEE
Q psy519            8 HGDHKHFIQNSFKPE----TVEDVLANLESQKNLQSRYLPYY----------------TSGHDMTVWSVEACSKGLALTG   67 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~----~~~~~l~~~~~~~~i~i~~~~~~----------------~~~~~~~i~~~~~~~~~~~~~~   67 (351)
                      .+|...|.+++|+|+    ..+.+||+++.||+|++|++...                +.+|...|++++|++++.+++|
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasg  283 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG  283 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEE
Confidence            356788999999995    11579999999999999998643                3468899999999998777999


Q ss_pred             eCCCcEEEEeCCCCe-eeEEeeCCCCCeEEE--EEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCC--CeEEEEE
Q psy519           68 SRDTTARLWSLEQMY-PLRIFVGHKQDVTCA--RFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVS--PVLSIAF  141 (351)
Q Consensus        68 ~~d~~i~vw~~~~~~-~~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~  141 (351)
                      +.||+|++||+++++ +...+.+|...|.++  +|+|++ .+|++++.|++|++||+++++....+.+|..  .|.+++|
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            999999999999764 455688999999999  568887 8999999999999999998887777666543  5789999


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee----
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH----  217 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----  217 (351)
                      +|+++.+++++.   |+.|++||++++..+..+.+|...|.+++|+|++++|++|+.||.|++||+..+ .+....    
T Consensus       364 sp~~~~l~s~~~---d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~  439 (524)
T 2j04_B          364 CPQIYSYIYSDG---ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA  439 (524)
T ss_dssp             ETTTTEEEEECS---SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred             CCCcCeEEEeCC---CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence            999999999988   999999999999988888899999999999999999999999999999998653 221111    


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcee-----eeeecceeEEecCCc---eeeeeeccceeeEEEe
Q psy519          218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP-SASKI-----GIGVYPRCAAQPVGF---EAATLAANSRVRTLRE  287 (351)
Q Consensus       218 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~-----~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~  287 (351)
                      ......+.+++|+|+++.+. ...  .+.+|+.. ++..+     +...+.+++|+|++.   .++++..++.++.+.+
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             ceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence            01112477999999998553 222  23344332 23222     236788999999965   7788777775544443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.7e-38  Score=273.22  Aligned_cols=227  Identities=16%  Similarity=0.138  Sum_probs=191.8

Q ss_pred             CccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC--eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-
Q psy519           49 HDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM--YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-  124 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-  124 (351)
                      +.++|++++|+|++.+ ++++.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++ 
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            5678999999999988 88889999999999988  7788889999999999999999999999999999999999877 


Q ss_pred             --eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc---eeEEecc-CCCCEEEEEECCCCcEEEEEcC
Q psy519          125 --SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSD-HVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       125 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                        ....+..|...|.+++|+|++++|++++.   |+.|++||+++++   ....+.. |...|.+++|+|++++|++++.
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEES---SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEec---CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence              66777889999999999999999999999   9999999999876   4677777 9999999999999999999999


Q ss_pred             CCeEEEEEcCC------------------CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----e
Q psy519          199 DGLVLTHELTT------------------GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK----I  256 (351)
Q Consensus       199 dg~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~----~  256 (351)
                      |+.|++||++.                  ++.+..+  .|...|.+++|+|++++|++++.||.|++||+.+++.    +
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            99999999853                  3344444  6678899999999999999999999999999998876    3


Q ss_pred             ee-----eecceeEEecCCceeeeeeccc
Q psy519          257 GI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       257 ~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ..     ..+..++|+|++..++++..++
T Consensus       245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          245 ITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             CCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             EeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            22     4567899999999988776554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=288.79  Aligned_cols=244  Identities=18%  Similarity=0.266  Sum_probs=212.1

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCC--CcE-EEEeCCCcEE
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSK--GLA-LTGSRDTTAR   74 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~--~~~-~~~~~d~~i~   74 (351)
                      .+..+|..+|.+++|+|+  +++|++|+.||.|++|++...       +.+|...|++++|+++  +.+ ++++.||.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~d--g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSS--SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCC--CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            467899999999999999  999999999999999999743       6789999999999987  776 9999999999


Q ss_pred             EEeCCCCe--eeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCc--eeEEeccCCCCeEEEEEcc-----
Q psy519           75 LWSLEQMY--PLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSP-----  143 (351)
Q Consensus        75 vw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-----  143 (351)
                      +||+.+++  .+..+.+|...|.+++|+|+  ++.+++++.||.|++||++++.  ....+..|...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999886  67778889999999999999  9999999999999999998873  4455677999999999999     


Q ss_pred             --------CCCEEEEEecCCCCCeEEEEEccCC----ceeEEeccCCCCEEEEEECCC---CcEEEEEcCCCeEEEEEcC
Q psy519          144 --------CGKYLASGGTGSYDKAVRLWSITDG----ASVRVFSDHVSPVLSIAFSPC---GKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       144 --------~~~~l~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~  208 (351)
                              ++.++++++.   ||.|++||++++    .....+..|..+|.+++|+|+   ++++++++.||.|++||++
T Consensus       161 ~~~~~~~~d~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ------CGGGCCEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             ccccccCCCCCEEEEEEC---CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                    5899999999   999999999987    455677889999999999999   8999999999999999998


Q ss_pred             CCcEEEE--e--eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          209 TGRVISR--F--HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       209 ~~~~~~~--~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      +++....  .  ...+...+.+++|+|++++|++++.||.|++|++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            8642111  1  1235578999999999999999999999999999854

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-35  Score=261.54  Aligned_cols=274  Identities=16%  Similarity=0.181  Sum_probs=228.4

Q ss_pred             cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe------eeEEeeCCCCCeEEEEEeCC----C---CEEEEEeCC
Q psy519           46 TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY------PLRIFVGHKQDVTCARFHPK----I---TYIGTGSYD  112 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~i~~i~~~~~----~---~~l~~~~~d  112 (351)
                      +.+|...|++++|+| ..+++++.|+.|++|++.+++      .+..+.+|...|.+++|+|+    +   ++|++++.|
T Consensus        12 ~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           12 GKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence            678999999999999 556999999999999999887      67888899999999999999    9   999999999


Q ss_pred             CcEEEEeCCCCce-----eEEeccC-----CCCeEEEEEc----cCCCE-EEEEecCCCCCeEEEEEccC------Ccee
Q psy519          113 KAVRLWSITDGAS-----VRVFSDH-----VSPVLSIAFS----PCGKY-LASGGTGSYDKAVRLWSITD------GASV  171 (351)
Q Consensus       113 g~i~i~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~~~~d~~i~i~d~~~------~~~~  171 (351)
                      |.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.   |+.|++||+++      ++.+
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSCEEEEEEESSSSHHHHTTT
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC---CCcEEEEeCCcccccccccee
Confidence            9999999998887     7888888     5999999999    99999 999998   99999999998      6655


Q ss_pred             E-----Ee-------ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc--C---CCCEEEEEEcCCCC
Q psy519          172 R-----VF-------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ--E---HEPVTSLVWSVTGE  234 (351)
Q Consensus       172 ~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~  234 (351)
                      .     .+       ..|...+.+++|+|++ ++++++.||.|++||+++++.+..+...  |   ...+.+++|+|+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~  246 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  246 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence            5     66       4488899999999999 9999999999999999999988887631  5   77899999999999


Q ss_pred             EEEEEeCC---CeEEEEeCCCCceeeee------------------ecceeEEecCCceeeeeeccceeeEEEeeeceeC
Q psy519          235 TLVTGSLT---GTVQFYGWPSASKIGIG------------------VYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       235 ~l~~~~~d---g~i~i~~~~~~~~~~~~------------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +|++++.|   |.|++||+.+++.+...                  .+..++|+|++..+++++.++.   +++|+..++
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~  323 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK---LRFWDVKTK  323 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE---EEEEETTTT
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe---EEEEEcCCC
Confidence            99999999   99999999988766543                  3567999999999999988875   555555444


Q ss_pred             ce-----------------------------EEEeeEEEEecCCc----------eeeccEEEecCCccccceeee
Q psy519          294 PV-----------------------------VVVESFIVEIRPDK----------WYEANLIVLDDDLKECNLETY  330 (351)
Q Consensus       294 ~~-----------------------------~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~  330 (351)
                      +.                             ..+..  +.|+|++          .+.... ..+..++.|+++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~--~~~~~~g~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD--VKFLKKGWRSGMGADLNESLCCV-CLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE--EEEECTTTSBSTTCTTSCEEEEE-ETTTEEEEEEEEC-
T ss_pred             ceeEEEecccCcccchhhhhccccccccccCCceeE--EEeccccccccccccccceEEEe-cCCCcEEEEEcCCC
Confidence            32                             22333  6889997          333322 46788999988764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-35  Score=248.33  Aligned_cols=238  Identities=21%  Similarity=0.274  Sum_probs=211.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~   78 (351)
                      ...|...|.+++|+|+  +++|++++.|+.+++|++...        ..+|...|.++.|. .+.+++++.|+.|++|| 
T Consensus        55 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d-  130 (313)
T 3odt_A           55 VYTGQGFLNSVCYDSE--KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK-  130 (313)
T ss_dssp             EEECSSCEEEEEEETT--TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE-
T ss_pred             eecCCccEEEEEECCC--CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc-
Confidence            3467899999999999  999999999999999998765        66799999999993 33449999999999999 


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                       .++....+..|...+.+++|+| +++.+++++.||.|++||  ..+....+.. +...+.+++|+|++. +++++.   
T Consensus       131 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---  203 (313)
T 3odt_A          131 -EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN---  203 (313)
T ss_dssp             -TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET---
T ss_pred             -CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC---
Confidence             6777888889999999999988 899999999999999999  4556666666 889999999999988 888888   


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      |+.|++||+++++.+..+..|..++.+++|+|++ .+++++.||.|++||+++++.+..+. .+...+.+++|+|+++ +
T Consensus       204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~  280 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-I  280 (313)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-E
T ss_pred             CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-E
Confidence            9999999999999999999999999999999999 58899999999999999999888886 4567999999999998 5


Q ss_pred             EEEeCCCeEEEEeCCCCceeee
Q psy519          237 VTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ++++.||.|++||+++++....
T Consensus       281 ~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          281 IVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEeCCCcEEEEeCCCCceeeh
Confidence            6788999999999998766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-36  Score=268.42  Aligned_cols=263  Identities=13%  Similarity=0.143  Sum_probs=214.7

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc----c-CCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCC---Ce---e
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY----T-SGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQ---MY---P   83 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~-~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~---~~---~   83 (351)
                      ..|+|+  ++.++++.      .|+....    + .+|.+.|++++|+| ++.+ ++|+.|++|++||+.+   +.   .
T Consensus        33 ~~f~~~--~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  104 (437)
T 3gre_A           33 KEFGPI--QEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS  104 (437)
T ss_dssp             GGGCCC--CCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred             hhcCCc--cccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence            357777  77777654      3665544    3 78999999999999 8877 9999999999999876   33   2


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCceeEEec----------c--CCCCeEEEE--EccCCC
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT---DGASVRVFS----------D--HVSPVLSIA--FSPCGK  146 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~----------~--~~~~i~~~~--~~~~~~  146 (351)
                      ...+ .|...|.+++|+|++++|++++.||.|++||+.   +++....+.          .  +...+.++.  ++++++
T Consensus       105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred             eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence            3333 589999999999999999999999999999995   454443332          1  455667776  567899


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      ++++++.   |+.|++||+++++.+..+..  |...|.+++|+|++++|++++.||.|++||+++++.+..+...+...|
T Consensus       184 ~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  260 (437)
T 3gre_A          184 LLVALTN---LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI  260 (437)
T ss_dssp             EEEEEET---TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred             EEEEEeC---CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence            9999999   99999999999999999987  889999999999999999999999999999999999888876777899


Q ss_pred             EEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeeee-------------------------------cceeEEecC
Q psy519          225 TSLVWSV----TGETLVTGSLTGTVQFYGWPSASKIGIGV-------------------------------YPRCAAQPV  269 (351)
Q Consensus       225 ~~~~~~~----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------------------------------~~~~~~s~~  269 (351)
                      .+++|+|    ++.+|++++.||.|++||+++++.+....                               +..++|+ +
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~  339 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N  339 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence            9996665    67799999999999999999887654322                               5567788 6


Q ss_pred             CceeeeeeccceeeEEEeeeceeCce
Q psy519          270 GFEAATLAANSRVRTLREMHEIVGPV  295 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~  295 (351)
                      +..+++++.++   .+++|+..+++.
T Consensus       340 ~~~l~s~~~d~---~i~~wd~~~~~~  362 (437)
T 3gre_A          340 DKILLTDEATS---SIVMFSLNELSS  362 (437)
T ss_dssp             TEEEEEEGGGT---EEEEEETTCGGG
T ss_pred             ceEEEecCCCC---eEEEEECCCccc
Confidence            67788887776   567777766653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.1e-35  Score=258.13  Aligned_cols=243  Identities=22%  Similarity=0.322  Sum_probs=211.1

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ++|...|.+|+|+|+  |++||+|+.||.|++|++...     ..+|...+.++.++  +.+ ++|+.|+.+++||....
T Consensus       144 ~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          144 EQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             cCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            567889999999999  999999999999999999887     77899999999885  445 99999999999998764


Q ss_pred             -eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc----eeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           82 -YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA----SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        82 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                       ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..+++    .+.....|...|.+++|+|.+..+++.+.++.
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~  299 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  299 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence             4567788999999999999999999999999999999998765    34566778999999999997654443323344


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc--CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG--EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      |+.|++||+++++....+..+ ..+.++.|+|+++.+++++  .|+.|++||+.+++.+..+. .|...|.+++|+|+|+
T Consensus       300 D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~  377 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA  377 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence            999999999999988888654 5788999999999888765  68999999999999999886 5778999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcee
Q psy519          235 TLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +|++|+.|++|+|||+......
T Consensus       378 ~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          378 TVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             CEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEEecCCeEEEEECCCCCcc
Confidence            9999999999999999765443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=258.07  Aligned_cols=275  Identities=14%  Similarity=0.191  Sum_probs=224.1

Q ss_pred             cCCCccceEEEEECCCCc-E-EEEeC---CCcEEEEeCCCCeeeEEe-eCCCCCeEEEEEeCC---CCEEEEEeCCCcEE
Q psy519           46 TSGHDMTVWSVEACSKGL-A-LTGSR---DTTARLWSLEQMYPLRIF-VGHKQDVTCARFHPK---ITYIGTGSYDKAVR  116 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~-~-~~~~~---d~~i~vw~~~~~~~~~~~-~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~  116 (351)
                      ..+|...|.+++|+|++. + ++++.   |+.|++||+.+++..... .+|...|.+++|+|+   +++|++++.||.|+
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            356999999999999985 4 55655   999999999988765443 378899999999998   69999999999999


Q ss_pred             EEeCCCCc-eeEEeccCCCCeEEEEE------ccCCCEEEEEecCCCCCeEEEEEccCCc-eeEEeccCCC----CEEEE
Q psy519          117 LWSITDGA-SVRVFSDHVSPVLSIAF------SPCGKYLASGGTGSYDKAVRLWSITDGA-SVRVFSDHVS----PVLSI  184 (351)
Q Consensus       117 i~d~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~----~i~~~  184 (351)
                      +||+.+++ .+..+.+|...|.+++|      +|++++|++++.   |+.|++||+++++ .+..+..+..    .+.++
T Consensus        94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---CCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            99999988 88889999999999954      789999999999   9999999999886 6777766554    78888


Q ss_pred             E----ECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcee-
Q psy519          185 A----FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV---TGETLVTGSLTGTVQFYGWPSASKI-  256 (351)
Q Consensus       185 ~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~-  256 (351)
                      +    |+|+++++++++.||.|++||+++++.....  .+...+.+++|+|   ++.+|++++.||.|++||+++++.. 
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            8    7889999999999999999999998875543  5678999999999   9999999999999999999876543 


Q ss_pred             ---------eeeecceeEEecCCc-eeeeeeccceeeEEEeeeceeC---------------------------ceEEEe
Q psy519          257 ---------GIGVYPRCAAQPVGF-EAATLAANSRVRTLREMHEIVG---------------------------PVVVVE  299 (351)
Q Consensus       257 ---------~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~g---------------------------~~~~~~  299 (351)
                               +...+..++|+|++. .+++++.++.+   ++|+...+                           +...+.
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i---~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL---HLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE---EEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE---EEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence                     224567899999998 78888888755   45554322                           222333


Q ss_pred             eEEEEecCCceeeccEEEecCCccccceeee
Q psy519          300 SFIVEIRPDKWYEANLIVLDDDLKECNLETY  330 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  330 (351)
                      +  +.|+|++.+.......+..++.|+++..
T Consensus       326 ~--~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          326 S--LDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             E--EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             E--EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            3  6899999887644467889999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-35  Score=262.55  Aligned_cols=258  Identities=12%  Similarity=0.044  Sum_probs=217.2

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCcc--------C-----------------------------------
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYT--------S-----------------------------------   47 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~--------~-----------------------------------   47 (351)
                      ..++.+++|+|+  |++|+++ .++.|++|++.++.        .                                   
T Consensus         4 ~~p~~~v~~s~d--g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            4 IHPLQNLLTSRD--GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             ECCCCEEEECSS--SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             cccEEEEEecCC--CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            357889999999  9976665 57899999975541        1                                   


Q ss_pred             -------------------CCccceEEEEECCCCcE--EEEeCCCcEEEEeCC--CCeeeEEee--CCCCCeEEEEEeCC
Q psy519           48 -------------------GHDMTVWSVEACSKGLA--LTGSRDTTARLWSLE--QMYPLRIFV--GHKQDVTCARFHPK  102 (351)
Q Consensus        48 -------------------~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~i~~i~~~~~  102 (351)
                                         +|.+.|++++|+|++.+  ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                               23447999999999976  678899999999999  888887775  56789999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeE----EeccCCCCeEEEEEccC---CCEEEEEecCCCCCeEEEEEccCCceeEE-e
Q psy519          103 ITYIGTGSYDKAVRLWSITDGASVR----VFSDHVSPVLSIAFSPC---GKYLASGGTGSYDKAVRLWSITDGASVRV-F  174 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-~  174 (351)
                      +++|++++.+|.+++|++.+++...    .+.+|...|.+++|+|+   +++|++++.   |+.|++||+++++.+.. +
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR---DEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET---TSCEEEEEESCTTCEEEEC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC---CCcEEEEECCCCceeeeee
Confidence            9999999999999999998877554    67789999999999999   999999998   99999999999988877 5


Q ss_pred             ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc------------------------CCCCEEEEEEc
Q psy519          175 SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ------------------------EHEPVTSLVWS  230 (351)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------~~~~v~~~~~~  230 (351)
                      .+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+...                        ....+..++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            6899999999999 9999999999999999999999988877532                        23568999999


Q ss_pred             CCCCEEEEEe-CCCeEEEEeC--CCC---ceeee----eecceeEEecCCceeee
Q psy519          231 VTGETLVTGS-LTGTVQFYGW--PSA---SKIGI----GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       231 ~~~~~l~~~~-~dg~i~i~~~--~~~---~~~~~----~~~~~~~~s~~~~~~~~  275 (351)
                      |++++|++++ .|+.|++|++  ..+   +.+..    ..+..++|+|++..++.
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTL  371 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEE
Confidence            9999999998 8999999999  554   33322    45678999996443333

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=257.42  Aligned_cols=240  Identities=20%  Similarity=0.257  Sum_probs=207.4

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC--CCeeeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|...|++++|+|++.+ ++++.|+.|++|++.  +++.+..+.+|...|.+++|+|+  +++|++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            4689999999999999987 999999999999998  66777888899999999999987  899999999999999999


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECC------
Q psy519          121 TDGA--SVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSP------  188 (351)
Q Consensus       121 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~------  188 (351)
                      .+++  .+..+..|...|.+++|+|+  ++++++++.   |+.|++||++++.  ....+..|...|.+++|+|      
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9987  67777889999999999999  999999999   9999999998873  4456678999999999999      


Q ss_pred             -------CCcEEEEEcCCCeEEEEEcCCCcEE----EEeeccCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc
Q psy519          189 -------CGKYLASGGEDGLVLTHELTTGRVI----SRFHLQEHEPVTSLVWSVT---GETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       189 -------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                             ++.++++++.||.|++||++++...    ..+. .|...|.+++|+|+   +++|++++.||.|++||+.+++
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                   6999999999999999999876532    3332 46688999999999   8999999999999999999864


Q ss_pred             ee----------eeeecceeEEecCCceeeeeeccceeeEEEeeecee
Q psy519          255 KI----------GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIV  292 (351)
Q Consensus       255 ~~----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
                      ..          ....+..++|+|++..+++++.++.   +++|+...
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~---i~iw~~~~  287 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK---VTLWKENL  287 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS---EEEEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc---EEEEeCCC
Confidence            11          1245678899999999999988875   45555543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=256.39  Aligned_cols=262  Identities=11%  Similarity=0.037  Sum_probs=208.8

Q ss_pred             EeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC---------CCee
Q psy519           16 QNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE---------QMYP   83 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~---------~~~~   83 (351)
                      ...+.++  +.+|++|+.||.|++||+...   ..-....|.++.|+|+  +++++.|++|++|+..         +++.
T Consensus        41 ~~~~~~d--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           41 NKSMYYD--KWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             CSSSSEE--EEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhhhcCC--CCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3455567  899999999999999999876   1112466777888888  9999999999999765         4444


Q ss_pred             eEEee-CCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           84 LRIFV-GHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        84 ~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      +..+. +|...|.+++|+|  +++++++++.||.|++||+++++...... .+...+.+++|+|++.+|++|+.   |+.
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---dg~  193 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP---DGI  193 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---TSC
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---CCE
Confidence            44443 6778899999999  99999999999999999999998876663 35568999999999999999998   999


Q ss_pred             EEEEEccCCcee-EEecc-CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCE--EEEEEcCCC
Q psy519          160 VRLWSITDGASV-RVFSD-HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPV--TSLVWSVTG  233 (351)
Q Consensus       160 i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v--~~~~~~~~~  233 (351)
                      |++||+++++.+ ..+.. |..+|.+++|+|++.+|++++ ++.|++||+++++.+..+..  .+...+  .+++|+|++
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            999999999887 78887 999999999999999999999 55999999998876544321  011223  469999999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCcee-eeeecceeEEec---CCceeeeeeccceeeEE
Q psy519          234 ETLVTGSL-TGTVQFYGWPSASKI-GIGVYPRCAAQP---VGFEAATLAANSRVRTL  285 (351)
Q Consensus       234 ~~l~~~~~-dg~i~i~~~~~~~~~-~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~  285 (351)
                      ++|++++. |+.+++|++...... ....+..+.|+|   ++..++++..++.+..+
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             CEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEE
Confidence            99999998 999999999765432 335566778888   77888888888765543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-35  Score=262.61  Aligned_cols=241  Identities=19%  Similarity=0.337  Sum_probs=209.1

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCC----------c-----cCCCccceEEEEECCCCc-E-EEEeCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY----------Y-----TSGHDMTVWSVEACSKGL-A-LTGSRD   70 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~----------~-----~~~~~~~i~~~~~~~~~~-~-~~~~~d   70 (351)
                      .+|...|.+++|+|+. +.+|++++.+|.|++|++..          .     +.+|...|.+++|+|++. + ++++.|
T Consensus       125 ~~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          125 INHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EcCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            5688999999999961 57899999999999999986          2     568999999999999987 5 999999


Q ss_pred             CcEEEEeCCCCee-------eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC---ceeEEeccCCCCeEEE
Q psy519           71 TTARLWSLEQMYP-------LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSI  139 (351)
Q Consensus        71 ~~i~vw~~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~  139 (351)
                      |.|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|+++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987322       456678999999999999 7789999999999999999987   5677778899999999


Q ss_pred             EEccCCC-EEEEEecCCCCCeEEEEEccC-CceeEEeccCCCCEEEEEECCCCc-EEEEEcCCCeEEEEEcCCC------
Q psy519          140 AFSPCGK-YLASGGTGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPCGK-YLASGGEDGLVLTHELTTG------  210 (351)
Q Consensus       140 ~~~~~~~-~l~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------  210 (351)
                      +|+|++. ++++++.   |+.|++||+++ ...+..+..|...|.+++|+|+++ +|++++.|+.|++||+...      
T Consensus       284 ~~~p~~~~~l~tg~~---dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          284 SFNPYSEFILATGSA---DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EECSSCTTEEEEEET---TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EeCCCCCCEEEEEeC---CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999887 6888888   99999999998 567888889999999999999885 7999999999999999862      


Q ss_pred             --------cEEEEeeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q psy519          211 --------RVISRFHLQEHEPVTSLVWSVTGE-TLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       211 --------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~  253 (351)
                              +.+..+. .|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus       361 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                    4444432 4567899999999999 8999999999999998754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-35  Score=260.51  Aligned_cols=247  Identities=18%  Similarity=0.207  Sum_probs=210.1

Q ss_pred             cCCCCccceEEeeecC-CccccEEEEecCCCceEEEecCCc------------cCCCccceEEEEECCCC-cE-EEEeCC
Q psy519            6 LNHGDHKHFIQNSFKP-ETVEDVLANLESQKNLQSRYLPYY------------TSGHDMTVWSVEACSKG-LA-LTGSRD   70 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~i~~~~~~~~~-~~-~~~~~d   70 (351)
                      ...+|...|.+++|+| +  +++|++++.||.|++|++...            +.+|...|.+++|+|++ .+ ++++.|
T Consensus        76 ~~~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CBCCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             eEecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            4568999999999999 8  999999999999999998764            55799999999999997 45 999999


Q ss_pred             CcEEEEeCCCCeeeEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCC-eEEEEEccCCC
Q psy519           71 TTARLWSLEQMYPLRIF--VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSP-VLSIAFSPCGK  146 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~  146 (351)
                      +.|++||+++++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|... +.+++|+|+++
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999999888  789999999999999999999999999999999999998888 677765 89999999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCce-eEEec-cCCCCEEEEEECCCCcEEE-EEcCCCeEEEEEcCCCcE-EEEee-ccCC
Q psy519          147 YLASGGTGSYDKAVRLWSITDGAS-VRVFS-DHVSPVLSIAFSPCGKYLA-SGGEDGLVLTHELTTGRV-ISRFH-LQEH  221 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~-~~~~  221 (351)
                      +++++...+.|+.|++||+++++. +.... .+...+..++|+|++++++ +++.||.|++||+.+++. +..+. ..+.
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence            999983111299999999988754 33332 4677899999999999886 556799999999998873 33332 2345


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      ..+.+++|+|++.++++  .++.+++|++.+++..
T Consensus       314 ~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          314 ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred             CcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence            88999999999998764  4669999999886543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-34  Score=249.52  Aligned_cols=204  Identities=21%  Similarity=0.374  Sum_probs=179.0

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC----eeeEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM----YPLRIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLW  118 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~  118 (351)
                      +.+|.+.|++++|+|++.+ ++++.|+.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|++|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            5689999999999999987 99999999999999876    46677789999999999999  69999999999999999


Q ss_pred             eCCCC---------ceeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCCceeEEec------------
Q psy519          119 SITDG---------ASVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDGASVRVFS------------  175 (351)
Q Consensus       119 d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~------------  175 (351)
                      |++++         +.+..+..|...|.+++|+|+  ++++++++.   |+.|++||+++++.+..+.            
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN---DGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC---CCcEEEecCCChHHhcccccccccccccccc
Confidence            99887         557778889999999999999  999999999   9999999998876543322            


Q ss_pred             -cCCCCEEEEEECCC---CcEEEEEcCCCeEEEEEcCCCcE--EEEeeccCCCCEEEEEEcCCC----CEEEEEeCCCeE
Q psy519          176 -DHVSPVLSIAFSPC---GKYLASGGEDGLVLTHELTTGRV--ISRFHLQEHEPVTSLVWSVTG----ETLVTGSLTGTV  245 (351)
Q Consensus       176 -~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i  245 (351)
                       .|...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+. .|...|.+++|+|++    ++|++++.||.|
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence             57788999999997   89999999999998888877765  33332 466899999999998    899999999999


Q ss_pred             EEEeCCCC
Q psy519          246 QFYGWPSA  253 (351)
Q Consensus       246 ~i~~~~~~  253 (351)
                      ++||+..+
T Consensus       243 ~iwd~~~~  250 (351)
T 3f3f_A          243 RIFKITEK  250 (351)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeCCCC
Confidence            99999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=254.06  Aligned_cols=290  Identities=16%  Similarity=0.222  Sum_probs=229.4

Q ss_pred             CCceEEEecCCc-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCCeeeEEee-------------CCCCC
Q psy519           34 QKNLQSRYLPYY-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQMYPLRIFV-------------GHKQD   93 (351)
Q Consensus        34 ~~~i~i~~~~~~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~~~~~~-------------~~~~~   93 (351)
                      ++.+++|++...     ..+|.+.|++++|+| ++.+ ++++.||.|++||+.+++....+.             +|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            445667776654     678999999999999 8887 999999999999999876554443             58999


Q ss_pred             eEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC---CCEEEEEecCCCCCeEEEEEccCCc
Q psy519           94 VTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---GKYLASGGTGSYDKAVRLWSITDGA  169 (351)
Q Consensus        94 i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~d~~i~i~d~~~~~  169 (351)
                      |.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.++|.   +.++++++.   ++.|++||+++++
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~d~~~~~  177 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---GPKVQLCDLKSGS  177 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---SSSEEEEESSSSC
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC---CCeEEEEeCCCcc
Confidence            99999999 77899999999999999999998888876 7788999999984   459999998   9999999999999


Q ss_pred             eeEEeccCCCCEEEEEECCCCc-EEEEEcCCCeEEEEEcCCCc-EEEEee--------------ccCCCCEEEEEEcCCC
Q psy519          170 SVRVFSDHVSPVLSIAFSPCGK-YLASGGEDGLVLTHELTTGR-VISRFH--------------LQEHEPVTSLVWSVTG  233 (351)
Q Consensus       170 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~  233 (351)
                      .+..+..|...|.+++|+|+++ ++++++.||.|++||++++. .+..+.              ..+...|.+++|+|++
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  257 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG  257 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence            9999999999999999999998 58999999999999998765 333221              2455789999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeee---------cceeEE-ecCCceeeeeeccceeeEEEeeeceeCceE-------
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGIGV---------YPRCAA-QPVGFEAATLAANSRVRTLREMHEIVGPVV-------  296 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~~~---------~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------  296 (351)
                      ++|++++.||.|++||+.+++......         .....+ ...+..++++..++   .+++|+..++...       
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCCEEEEECCCS
T ss_pred             CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC---EEEEEECcCCcceeeeccCC
Confidence            999999999999999999887653211         111222 22344556666665   5667776555433       


Q ss_pred             -EEeeEEEEecCCceeeccEEEecCCccccceeeeeee
Q psy519          297 -VVESFIVEIRPDKWYEANLIVLDDDLKECNLETYSQM  333 (351)
Q Consensus       297 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  333 (351)
                       .+.+  +.|+|++.++... ..+..++.|++++....
T Consensus       335 ~~v~~--~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          335 KTVDC--CVFQSNFQELYSG-SRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             SCEEE--EEEETTTTEEEEE-ETTSCEEEEEECC----
T ss_pred             CeEEE--EEEcCCCCEEEEE-CCCCeEEEEeCCCCCcc
Confidence             3333  6899999876644 57888999999887543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.2e-34  Score=252.38  Aligned_cols=271  Identities=15%  Similarity=0.259  Sum_probs=220.3

Q ss_pred             cceEEeeecCCccc--------cEEEEecC----CCceEEEecC------------------------C--c------cC
Q psy519           12 KHFIQNSFKPETVE--------DVLANLES----QKNLQSRYLP------------------------Y--Y------TS   47 (351)
Q Consensus        12 ~~v~~~~~sp~~~~--------~~l~~~~~----~~~i~i~~~~------------------------~--~------~~   47 (351)
                      .+..++.|.|+..+        .++++|+.    ...|.++++.                        .  .      ..
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            56688899997211        46777754    3456676543                        0  0      45


Q ss_pred             CCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCC----------CeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCc
Q psy519           48 GHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQ----------MYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKA  114 (351)
Q Consensus        48 ~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~  114 (351)
                      .|.+.|++++|+|+ +.+ ++++.+|.|++|++.+          .+....+.+|...+.+++|+|++. +|++++.||.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            78899999999997 555 8999999999999986          567788889999999999999988 9999999999


Q ss_pred             EEEEeCCCCce-------eEEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCC---ceeEEeccCCCCEEE
Q psy519          115 VRLWSITDGAS-------VRVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLS  183 (351)
Q Consensus       115 i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~  183 (351)
                      |++||+..+..       ...+..|...|.+++|+| ++.+|++++.   |+.|++||++++   +.+..+..|...|.+
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  282 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---DQKLMIWDTRNNNTSKPSHTVDAHTAEVNC  282 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred             EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC---CCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence            99999987432       456678999999999999 6788999988   999999999987   577778889999999


Q ss_pred             EEECCCCc-EEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------
Q psy519          184 IAFSPCGK-YLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVTSLVWSVTGE-TLVTGSLTGTVQFYGWPSA-------  253 (351)
Q Consensus       184 ~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~-------  253 (351)
                      ++|+|++. ++++|+.||.|++||+++ ...+..+. .|...|.+++|+|+++ +|++++.||.|++||+...       
T Consensus       283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            99999887 788999999999999998 45566664 5678999999999985 7899999999999999872       


Q ss_pred             -------ceeee-----eecceeEEecCCc-eeeeeeccceeeEEE
Q psy519          254 -------SKIGI-----GVYPRCAAQPVGF-EAATLAANSRVRTLR  286 (351)
Q Consensus       254 -------~~~~~-----~~~~~~~~s~~~~-~~~~~~~~~~~~~~~  286 (351)
                             +.+..     ..+..++|+|++. .+++++.++.++.|+
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                   33322     4577899999999 677777776444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.7e-32  Score=238.03  Aligned_cols=301  Identities=12%  Similarity=0.042  Sum_probs=232.2

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeee
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ..+.+++|+|+  +++| ++++.++.|++||+.+.    ...+...+.+++|+|++++  ++++.++.|++||+.+++.+
T Consensus        32 ~~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~  109 (391)
T 1l0q_A           32 SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA  109 (391)
T ss_dssp             SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEECCC--CCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE
Confidence            45899999999  9876 67778999999999876    2223348999999999986  45556799999999999988


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEE-EEecCCCCCeEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~d~~i~i  162 (351)
                      ..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++++ ++..   ++.|++
T Consensus       110 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~---~~~v~~  184 (391)
T 1l0q_A          110 GTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISV  184 (391)
T ss_dssp             EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEE
T ss_pred             EEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCC---CCEEEE
Confidence            877654 468999999999977 67888999999999999988888754 5679999999999885 5555   899999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc---CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE-EE
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG---EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL-VT  238 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  238 (351)
                      ||+++++....+. +...+.+++|+|+++++++++   .++.|++||+++++.+..+..  +..+.+++|+|++++| ++
T Consensus       185 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          185 IDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             EETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEE
T ss_pred             EECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEE
Confidence            9999998777775 456789999999999999887   689999999999988877753  4568999999999977 56


Q ss_pred             EeCCCeEEEEeCCCCceeeeeecce--------eEEecCCcee-------------------eeeeccceeeEEEeeece
Q psy519          239 GSLTGTVQFYGWPSASKIGIGVYPR--------CAAQPVGFEA-------------------ATLAANSRVRTLREMHEI  291 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~~~~~~~~--------~~~s~~~~~~-------------------~~~~~~~~~~~~~~~~~~  291 (351)
                      ++.|+.|++||+.+++.+.......        +.+.|++..+                   ............++|+..
T Consensus       262 ~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  341 (391)
T 1l0q_A          262 LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG  341 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred             cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence            6889999999999988776532211        2223222111                   111222234467788887


Q ss_pred             eCceEEEeeEEEEecCCceeeccEEEecCCc
Q psy519          292 VGPVVVVESFIVEIRPDKWYEANLIVLDDDL  322 (351)
Q Consensus       292 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  322 (351)
                      .|...........|++++.|.......+.+-
T Consensus       342 ~g~~~~~~~~~~~~~~~g~y~~~~~~~~~~g  372 (391)
T 1l0q_A          342 DGSSSKKQNPTHTYSETGIYTVRLTVSNSNG  372 (391)
T ss_dssp             SSCEECSSSCEECCSSCEEEEEEEEEEETTE
T ss_pred             CCcccCcCCCeEEeCCCceEEEEEEEECCCC
Confidence            7775544444568999999987776554433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=234.77  Aligned_cols=240  Identities=22%  Similarity=0.321  Sum_probs=205.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ++|...|.+++|+|+  +++|++|+.||.|++|++.+.     ..+|...+.++.+.  +.+ ++++.++.+++|+....
T Consensus        64 ~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           64 EQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             CSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             cCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCC
Confidence            578889999999999  999999999999999999987     67888888877664  445 99999999999998865


Q ss_pred             -eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce----eEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           82 -YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        82 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                       ..+..+.+|...+..+.++++++++++++.|+.|++||+++++.    ......+...|.+++++|++..++....++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  219 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  219 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence             45667789999999999999999999999999999999988653    3445567889999999997765543333344


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc--CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG--EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      ++.|++||.+........ .+...+..+.|+|++..+++++  .|+.|++||+++++.+..+. .|...|.+++|+|+++
T Consensus       220 ~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             TCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence            899999999888766655 5667899999999998877654  79999999999999999886 5778999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q psy519          235 TLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       235 ~l~~~~~dg~i~i~~~~~~  253 (351)
                      +|++|+.||+|++||+...
T Consensus       298 ~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEETTTEEEEECCSCC
T ss_pred             EEEEEecCCeEEEEECCCC
Confidence            9999999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.9e-33  Score=246.22  Aligned_cols=269  Identities=8%  Similarity=-0.011  Sum_probs=225.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ..+.+++|+|+  +.++++++.++.|++||+.+.          ..+|...|.+++|++++.+ ++++.|+.|++||+++
T Consensus       123 ~~~~~~~~s~~--~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDN--TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSS--SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCC--CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            34568999998  999999999999999999876          3377889999999999988 8999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC----
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGT-GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS----  155 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----  155 (351)
                      ++.+..+..|...+.+++|+|+++.+++ ++.++.|++||+++++.+..+.. ...+.+++|+|+++++++++...    
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccc
Confidence            9999899889999999999999998854 44799999999999988888765 45689999999999999887311    


Q ss_pred             -CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEE-EEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCC
Q psy519          156 -YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       156 -~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  233 (351)
                       .|+.|++||+++++.+..+ .+...+..++|+|+++.+ ++++.++.|++||+.+++....+.  +...+.+++|+|++
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg  356 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDG  356 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTS
T ss_pred             cCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCC
Confidence             1789999999988777665 445578999999999754 666889999999999988887764  56779999999999


Q ss_pred             CEEEEEeC---------------CCeEEEEeCCCCceeee----eecceeEEecCCceeeeeec-cceeeEEEeee
Q psy519          234 ETLVTGSL---------------TGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAA-NSRVRTLREMH  289 (351)
Q Consensus       234 ~~l~~~~~---------------dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~  289 (351)
                      ++|++++.               ||.|++||+.+++.+..    ..+..++|+|+|..+++++. ++   .+++|+
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~---~i~v~~  429 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDH---QIRVYR  429 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTT---EEEEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCC---eEEEEE
Confidence            99988876               57999999999887765    34567899999999887765 65   455554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-34  Score=252.08  Aligned_cols=271  Identities=13%  Similarity=0.100  Sum_probs=218.3

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      .+|...|.+++|+|+  |       .++.+.+|+....   ...|...|.+++|+|+|.+ ++++.||.|++||.+.  .
T Consensus        49 ~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~  117 (588)
T 2j04_A           49 NCNSKNLFHVKEFPL--E-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M  117 (588)
T ss_dssp             SSBGGGTEEEEEECC--C-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E
T ss_pred             cCCCccEEEEEECCC--C-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e
Confidence            689999999999999  7       6777888876644   3366889999999999987 9999999999999654  5


Q ss_pred             eEEeeCCCC-----CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-------eEEe----ccCCCCeEEEEEccCCCE
Q psy519           84 LRIFVGHKQ-----DVTCARFHPKITYIGTGSYDKAVRLWSITDGAS-------VRVF----SDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        84 ~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~  147 (351)
                      +..+. |..     .+.+++|+|||++|++|+.||+|++||+.+++.       +..+    .+|...|.+++|+|+|  
T Consensus       118 l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--  194 (588)
T 2j04_A          118 LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--  194 (588)
T ss_dssp             EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--
T ss_pred             eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--
Confidence            55666 655     599999999999999999999999999998753       5665    5677899999999999  


Q ss_pred             EEEEecCCCCCeEEEEEccCCce---eEEe-ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCC
Q psy519          148 LASGGTGSYDKAVRLWSITDGAS---VRVF-SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                      +++++.   |+.|++||+..++.   ...+ ..|...|.+++|+  ++.+++++ ++.|++||+.+++... +...|...
T Consensus       195 Laass~---D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~-~~~gh~~~  267 (588)
T 2j04_A          195 LVAALS---NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISS-LKTGSLEN  267 (588)
T ss_dssp             EEEEET---TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEE-EECSCCSC
T ss_pred             EEEEeC---CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEE-EEcCCCce
Confidence            777777   99999999988763   3456 4788899999999  68899887 6999999998776633 33367789


Q ss_pred             EEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeeeeecceeEEecCCceeeeeeccceeeEEEeeeceeC------ce
Q psy519          224 VTSLVW--SVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG------PV  295 (351)
Q Consensus       224 v~~~~~--~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g------~~  295 (351)
                      +..++|  +|++..|++++.||+ ++|...           .+.++|++..++..     ++.+++|+...+      ..
T Consensus       268 V~~va~~~s~d~~~La~a~edG~-klw~~d-----------~~~~spd~~l~a~~-----d~~v~lW~~~g~~l~~~~~~  330 (588)
T 2j04_A          268 FHIIPLNHEKESTILLMSNKTSY-KVLLED-----------ELHVTADNIIAPYL-----EKKFKKWSTIWNEFNNYETT  330 (588)
T ss_dssp             CCEEEETTCSSCEEEEECSSCEE-EEEESS-----------SEEEECCCSSHHHH-----HHHHHHTTTTTTSSSSSCCE
T ss_pred             EEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------cEEECCCceEEEEc-----CCEEEEEECCCCceeeeccc
Confidence            999999  999999999999999 999987           35689999877764     345555654211      13


Q ss_pred             EEEeeEEEEecCCceeeccEEEe
Q psy519          296 VVVESFIVEIRPDKWYEANLIVL  318 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~  318 (351)
                      ..+.+  +.|+|||...+..-..
T Consensus       331 ~~I~~--va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          331 LVIHG--ISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             EEEEE--EEECTTSSEEEEEEEE
T ss_pred             eEEEE--EEECCCCCEEEEEEec
Confidence            44666  8899999766544443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-33  Score=252.09  Aligned_cols=235  Identities=22%  Similarity=0.384  Sum_probs=205.4

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      ...+|...|.+++|  +  +++|++|+.||.|++||+.+.     +.+|...|.+++|++ +.+++++.|+.|++||+.+
T Consensus       168 ~~~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             EECCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSS
T ss_pred             EEcCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCC
Confidence            34689999999999  6  889999999999999999887     678999999999974 4569999999999999998


Q ss_pred             Ceee---EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           81 MYPL---RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        81 ~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ++..   ..+.+|...|.+++|  +++++++++.||.|++||+++++.+..+.+|...|.++++  +++++++++.   |
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~---d  315 (435)
T 1p22_A          243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS---D  315 (435)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET---T
T ss_pred             CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC---C
Confidence            7655   667889999999999  6789999999999999999999999999999999999999  4789999998   9


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc---------EEEEeeccCCCCEEEEE
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR---------VISRFHLQEHEPVTSLV  228 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~  228 (351)
                      +.|++||+++++.+..+..|...|.+++|  ++++|++|+.||.|++||++++.         .+..+. .|...|.+++
T Consensus       316 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~  392 (435)
T 1p22_A          316 NTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQ  392 (435)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEE
T ss_pred             CeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEE
Confidence            99999999999999999999999999999  78899999999999999997665         666664 5678899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      |  ++.+|++++.||.|++||+.+.....
T Consensus       393 ~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          393 F--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             E--CSSCEEECCSSSEEEEEC--------
T ss_pred             e--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            9  78889999999999999998765543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.6e-34  Score=250.94  Aligned_cols=234  Identities=15%  Similarity=0.113  Sum_probs=173.5

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECC--------CCcE-EEEeCCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACS--------KGLA-LTGSRDT   71 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~--------~~~~-~~~~~d~   71 (351)
                      ........++|+  +.+|++++.|++|++|+....          +.+|.+.|++++|+|        ++++ ++++.|+
T Consensus        89 ~~~~~~~~~~~~--~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           89 DGDGNVNSSPVY--SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             --------CCEE--EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             CCCcceeecCCC--CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            334444555666  788999999999999998765          678999999999997        6777 9999999


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEE----------------------
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVRV----------------------  128 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~----------------------  128 (351)
                      +|+|||+.++.++..+..|...+.+++|+|++. +|++++.|++|++||+++++....                      
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            999999998888888888999999999999874 799999999999999987754322                      


Q ss_pred             ---eccCCCCeEEEEEc-cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE------------------EE
Q psy519          129 ---FSDHVSPVLSIAFS-PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI------------------AF  186 (351)
Q Consensus       129 ---~~~~~~~i~~~~~~-~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~------------------~~  186 (351)
                         ..+|...+.++.|+ |+++.+++++.   |+.+++||++.++....+..|...+..+                  .|
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~---d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCK---SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECT---TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeC---CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence               13466788889986 79999999998   9999999998877665555444433333                  33


Q ss_pred             CC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          187 SP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       187 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +|  ++.++++|+.||.|++||+.+++...... .+..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            33  44567788999999999999988777654 5678999999999999999998765 5566543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-33  Score=247.13  Aligned_cols=234  Identities=7%  Similarity=0.037  Sum_probs=200.5

Q ss_pred             ccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe---eeEEeeC-------------------------------------
Q psy519           50 DMTVWSVEACSKGLALTGSRDTTARLWSLEQMY---PLRIFVG-------------------------------------   89 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~---~~~~~~~-------------------------------------   89 (351)
                      ..++.+++|+++|++++++.++.|++||+.+++   .+..+..                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            457889999999999777788999999999888   5555443                                     


Q ss_pred             -----------------CCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCC--CCceeEEec--cCCCCeEEEEEccCCCE
Q psy519           90 -----------------HKQDVTCARFHPKITYI-GTGSYDKAVRLWSIT--DGASVRVFS--DHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        90 -----------------~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~  147 (351)
                                       |...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .+...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                             23369999999999996 899999999999999  888888775  56789999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeE----EeccCCCCEEEEEECCC---CcEEEEEcCCCeEEEEEcCCCcEEEEeeccC
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVR----VFSDHVSPVLSIAFSPC---GKYLASGGEDGLVLTHELTTGRVISRFHLQE  220 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  220 (351)
                      |++++.   ++.+++|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...|
T Consensus       164 l~~~~~---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          164 VIIADK---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             EEEEET---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             EEEEeC---CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            999998   9999999998876543    67789999999999999   9999999999999999999998887765567


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------------------------------cceeEEecCC
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV------------------------------YPRCAAQPVG  270 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~------------------------------~~~~~~s~~~  270 (351)
                      ...|.+++|+ ++++|++++.|+.|++||+.+++.+....                              +..++|+|++
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            7899999999 99999999999999999999998765432                              4468999999


Q ss_pred             ceeeeee-ccceeeEEEeeec
Q psy519          271 FEAATLA-ANSRVRTLREMHE  290 (351)
Q Consensus       271 ~~~~~~~-~~~~~~~~~~~~~  290 (351)
                      ..+++++ .++.   +++|+.
T Consensus       320 ~~l~~~~~~d~~---i~iw~~  337 (450)
T 2vdu_B          320 PFVAFFVEATKC---IIILEM  337 (450)
T ss_dssp             SEEEEEETTCSE---EEEEEE
T ss_pred             CEEEEEECCCCe---EEEEEe
Confidence            9998888 5654   555555

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3e-33  Score=240.96  Aligned_cols=232  Identities=16%  Similarity=0.126  Sum_probs=204.6

Q ss_pred             CCCccceEEeeecCCcccc-EEEEecCCCceEEEec-CCc----cCC--CccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            8 HGDHKHFIQNSFKPETVED-VLANLESQKNLQSRYL-PYY----TSG--HDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~-~~~----~~~--~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      .+|...|.+++|+|+  ++ +|++++.||.|++|++ ...    ..+  |...|.+++|+| +.+ ++++.|+.|++||+
T Consensus        53 ~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           53 LRYKHPLLCCNFIDN--TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EECSSCEEEEEEEES--SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred             eecCCceEEEEECCC--CCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence            368899999999999  99 9999999999999999 766    667  999999999999 666 99999999999999


Q ss_pred             CC---------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-Cce--eEEeccCCCCeEEEEEcc-CC
Q psy519           79 EQ---------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-GAS--VRVFSDHVSPVLSIAFSP-CG  145 (351)
Q Consensus        79 ~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~-~~  145 (351)
                      .+         ++++..+. |...+.+++|+|++  +++++.|+.|++||+++ +..  ......+...+.+++|+| ++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  206 (342)
T 1yfq_A          130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence            87         77666665 88999999999886  88999999999999988 543  334456788999999999 99


Q ss_pred             CEEEEEecCCCCCeEEEEEccCC------ceeEEeccCCC---------CEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          146 KYLASGGTGSYDKAVRLWSITDG------ASVRVFSDHVS---------PVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      +++++++.   |+.|++||++..      +....+..|..         +|.+++|+|++++|++++.||.|++||+.++
T Consensus       207 ~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          207 EGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CEEEEEec---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence            99999999   999999999887      77788877755         9999999999999999999999999999999


Q ss_pred             cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEeC
Q psy519          211 RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT-VQFYGW  250 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~~~  250 (351)
                      +.+..+...|...|.+++  |++++|++++.||. .+.|..
T Consensus       284 ~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          284 KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             hHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            998887643378899999  99999999999998 555553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=267.04  Aligned_cols=239  Identities=21%  Similarity=0.257  Sum_probs=206.1

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC--CCeeeEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFHPK--ITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~  120 (351)
                      +.+|.+.|++++|+|++.+ ++|+.||.|++||+.  +++....+.+|...|.+++|+|+  +++|++++.||.|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            4689999999999999977 999999999999998  55777888999999999999987  999999999999999999


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEccC--CCEEEEEecCCCCCeEEEEEccCC--ceeEEeccCCCCEEEEEECC------
Q psy519          121 TDGA--SVRVFSDHVSPVLSIAFSPC--GKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSP------  188 (351)
Q Consensus       121 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~------  188 (351)
                      .+++  ....+..|...|.+++|+|+  ++.+++++.   |+.|++||++++  .....+..|...|.+++|+|      
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9887  67777889999999999999  999999999   999999999887  34456678999999999999      


Q ss_pred             -------CCcEEEEEcCCCeEEEEEcCCCc----EEEEeeccCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc
Q psy519          189 -------CGKYLASGGEDGLVLTHELTTGR----VISRFHLQEHEPVTSLVWSVT---GETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       189 -------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                             ++.++++++.||.|++||++++.    ....+. .|...|.+++|+|+   +++|++++.||.|++||+.+++
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                   58999999999999999998773    333443 56789999999999   8999999999999999998864


Q ss_pred             ee----------eeeecceeEEecCCceeeeeeccceeeEEEeeece
Q psy519          255 KI----------GIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       255 ~~----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                      ..          +...+..++|+|+|..+++++.++.   +++|+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~---I~vwd~~  284 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK---VTLWKEN  284 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC---EECCBCC
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE---EEEEecC
Confidence            21          2256778999999999999988875   5566554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=7e-34  Score=249.76  Aligned_cols=271  Identities=16%  Similarity=0.092  Sum_probs=193.7

Q ss_pred             cceEEeee---cCCccccEEEEecCCCceEEEecCCc--------------cCCCccceEEEEECC--------------
Q psy519           12 KHFIQNSF---KPETVEDVLANLESQKNLQSRYLPYY--------------TSGHDMTVWSVEACS--------------   60 (351)
Q Consensus        12 ~~v~~~~~---sp~~~~~~l~~~~~~~~i~i~~~~~~--------------~~~~~~~i~~~~~~~--------------   60 (351)
                      ....++.|   +|+  +..|++++.++.|.+|+....              ...+...+..+.|++              
T Consensus        16 ~~p~~~~w~~~~~~--~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           16 VRPYTTTWCSQSPS--CSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             CCEEEEEECTTSGG--GTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred             CCCeEEEEeCCCCC--CCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence            34455666   444  444555556788999976433              122334455555543              


Q ss_pred             ------CCcE-EEEeCCCcEEEEeCCCCeee-----EEeeCCCCCeEEEEEeC--------CCCEEEEEeCCCcEEEEeC
Q psy519           61 ------KGLA-LTGSRDTTARLWSLEQMYPL-----RIFVGHKQDVTCARFHP--------KITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        61 ------~~~~-~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~i~~i~~~~--------~~~~l~~~~~dg~i~i~d~  120 (351)
                            ++.+ ++++.|++|++||.++++..     ..+.+|...|.+++|+|        |+++|++++.|++|++||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence                  3344 89999999999999887643     34578999999999998        7899999999999999999


Q ss_pred             CCCceeEEeccCCCCeEEEEEccCCC-EEEEEecCCCCCeEEEEEccCCceeEEe-------------------------
Q psy519          121 TDGASVRVFSDHVSPVLSIAFSPCGK-YLASGGTGSYDKAVRLWSITDGASVRVF-------------------------  174 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~d~~i~i~d~~~~~~~~~~-------------------------  174 (351)
                      +++..+..+..|..++.+++|+|++. +|++++.   |+.|++||+++++.....                         
T Consensus       174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER---NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET---TSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             CCCceeeeecCCCCCcEEEEECCCCCceEEecCC---CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            98888888888999999999999874 7899988   999999999887543221                         


Q ss_pred             ccCCCCEEEEEEC-CCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE------------------EEEEEcC--CC
Q psy519          175 SDHVSPVLSIAFS-PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV------------------TSLVWSV--TG  233 (351)
Q Consensus       175 ~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v------------------~~~~~~~--~~  233 (351)
                      .+|...+.++.|+ |+++.+++++.|+.+++||+..++....+. .+...+                  ....|+|  ++
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD  329 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccccCcceeEEEccCCCC
Confidence            2466778888886 799999999999999999998776554442 111111                  2233444  34


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      .++++|+.||.|++||+.+++....     ..+.+++|+|+|+.||+++.++ +..++++.
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            4677888999999999998876543     5678899999999999886554 55666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.9e-31  Score=231.52  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=214.2

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i   97 (351)
                      +.++++++.++.|++||+...     ...| ..+.+++|+|++.+  ++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            457888999999999999877     3334 45899999999975  567789999999999999988887655 89999


Q ss_pred             EEeCCCCEEEE-EeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE-EEEecCCCCCeEEEEEccCCceeEEec
Q psy519           98 RFHPKITYIGT-GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGTGSYDKAVRLWSITDGASVRVFS  175 (351)
Q Consensus        98 ~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~d~~i~i~d~~~~~~~~~~~  175 (351)
                      +|+|++++|++ ++.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.   ++.|++||+++++.+..+.
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEEEe
Confidence            99999998755 45679999999999998887764 4578999999999987 56666   9999999999998888886


Q ss_pred             cCCCCEEEEEECCCCcEE-EEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEeCC
Q psy519          176 DHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS---LTGTVQFYGWP  251 (351)
Q Consensus       176 ~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~~~~  251 (351)
                      .+ ..+..++|+|+++++ ++++.++.|++||+++++....+.  +...+.+++|+|++++|++++   .++.|++||+.
T Consensus       156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            55 457999999999877 577889999999999998877664  456789999999999998887   68999999999


Q ss_pred             CCceeeee----ecceeEEecCCceeeee-eccceeeEEEeeeceeCceE
Q psy519          252 SASKIGIG----VYPRCAAQPVGFEAATL-AANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       252 ~~~~~~~~----~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +++.+...    .+..++|+|++..+++. ..++   .+++|+..+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~---~v~v~d~~~~~~~  279 (391)
T 1l0q_A          233 TNKITARIPVGPDPAGIAVTPDGKKVYVALSFXN---TVSVIDTATNTIT  279 (391)
T ss_dssp             TTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEE
T ss_pred             CCeEEEEEecCCCccEEEEccCCCEEEEEcCCCC---EEEEEECCCCcEE
Confidence            98776553    33568999999987544 4444   6777887776644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.8e-32  Score=242.70  Aligned_cols=310  Identities=11%  Similarity=0.051  Sum_probs=240.7

Q ss_pred             ccceEEee---ecCCccccEEEEe--------------cCCCceEEEecCC--c------cCCCccceEEEEECCCCcE-
Q psy519           11 HKHFIQNS---FKPETVEDVLANL--------------ESQKNLQSRYLPY--Y------TSGHDMTVWSVEACSKGLA-   64 (351)
Q Consensus        11 ~~~v~~~~---~sp~~~~~~l~~~--------------~~~~~i~i~~~~~--~------~~~~~~~i~~~~~~~~~~~-   64 (351)
                      ...+..++   |+|+  ++.++..              ..++.+.+|.++.  .      .......+.+++|+|++.+ 
T Consensus        60 ~~g~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  137 (433)
T 3bws_A           60 NIALVEMAIPVYKDE--KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLA  137 (433)
T ss_dssp             TEEEEEEEEECCCTT--CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEE
T ss_pred             CCccEEEEEeeccCC--CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEE
Confidence            45667778   8888  6655432              3334345555433  2      1122344668999997777 


Q ss_pred             EEEeCCCcEEEEeCCCCeeeE-----EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEE
Q psy519           65 LTGSRDTTARLWSLEQMYPLR-----IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  139 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  139 (351)
                      ++++.++.|++||+.+++...     .+.+|...+.+++|+|+++++++++.|+.|++||+++++.+..+..+...+.++
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~  217 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL  217 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence            777788899999999988776     345788899999999999999999999999999999999998888889999999


Q ss_pred             EEccCCCEEEEEe-cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc--------CCCeEEEEEcCCC
Q psy519          140 AFSPCGKYLASGG-TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG--------EDGLVLTHELTTG  210 (351)
Q Consensus       140 ~~~~~~~~l~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~  210 (351)
                      +|+|+++.+++++ .   ++.|++||+++++.+..+..+ ..+..++|+|+++++++++        .|+.|++||++++
T Consensus       218 ~~~~~~~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          218 LYDPIRDLVYCSNWI---SEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEETTTTEEEEEETT---TTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEcCCCCEEEEEecC---CCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            9999999886554 5   899999999999888877654 4589999999999999887        5889999999998


Q ss_pred             cEEEEeeccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccce----
Q psy519          211 RVISRFHLQEHEPVTSLVWSVTGETL-VTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSR----  281 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~----  281 (351)
                      +....+.  +...+..++|+|+++.+ ++++.|+.|++||+.+++....    ..+..++|+|++..++++..+..    
T Consensus       294 ~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  371 (433)
T 3bws_A          294 KLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTE  371 (433)
T ss_dssp             EEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred             cEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence            8777653  34578999999999755 5668899999999998877654    34567999999998888776543    


Q ss_pred             --------eeEEEeeeceeCceEEEee-----EEEEecCCceeeccEEEecCCcccccee
Q psy519          282 --------VRTLREMHEIVGPVVVVES-----FIVEIRPDKWYEANLIVLDDDLKECNLE  328 (351)
Q Consensus       282 --------~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (351)
                              ++.+++|+..+++......     ..+.|+|++.++...-..+..+..|++.
T Consensus       372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          372 GYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                    3478889887776543321     2368899998765442247778888764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.9e-32  Score=236.97  Aligned_cols=197  Identities=13%  Similarity=0.092  Sum_probs=167.4

Q ss_pred             CCccceEEeeecCCccccEEEE--ecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe
Q psy519            9 GDHKHFIQNSFKPETVEDVLAN--LESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~--~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~   82 (351)
                      .+...+.+++||||  |++|++  ++.|+.|++||+.+.    ...|...|.+++|+|+|++++.+.++.+++|+..+++
T Consensus       131 ~~~~~~~~v~fSpD--g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISRE--GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTT--SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCC
T ss_pred             CcccCEEEEEEcCC--CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCc
Confidence            34556889999999  999765  446899999999887    3457888999999999999544456677888877776


Q ss_pred             eeE--EeeCCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCce----eEEeccCCCCeEEEEEccCCCEEEEEe
Q psy519           83 PLR--IFVGHKQDVTCARFHPKITYIGTGSYDK----AVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        83 ~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      .+.  ....|...+.+++|+|+++.+++++.|+    .+++|++.....    ...+.+|...|++++|+|+|++|++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            553  3456888999999999999999998887    688899876553    345677899999999999999999999


Q ss_pred             cCCCCCeEEEEEccCCceeEEe-ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          153 TGSYDKAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      .   |+.|+|||+++++.+..+ .+|..+|++++|+|||++|++++.|++|+|||+...
T Consensus       289 ~---D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 N---DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             T---TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             C---CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9   999999999999998875 689999999999999999999999999999999643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-32  Score=235.76  Aligned_cols=223  Identities=13%  Similarity=0.066  Sum_probs=182.2

Q ss_pred             ECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---------CCceeE
Q psy519           58 ACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT---------DGASVR  127 (351)
Q Consensus        58 ~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~  127 (351)
                      +.+++.+ ++|+.||.|++||+++++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            3455655 999999999999999998887776  456778888887   9999999999999765         444344


Q ss_pred             Eec-cCCCCeEEEEEcc--CCCEEEEEecCCCCCeEEEEEccCCceeEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          128 VFS-DHVSPVLSIAFSP--CGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       128 ~~~-~~~~~i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      .+. .|..+|.+++|+|  +++++++++.   |+.|++||+++++...... .+...+.+++|+|++.+|++|+.||.|+
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADN---RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEET---TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            443 5668899999999  9999999999   9999999999998876663 4556899999999999999999999999


Q ss_pred             EEEcCCCcEE-EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--------eecc--eeEEecCCce
Q psy519          204 THELTTGRVI-SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--------GVYP--RCAAQPVGFE  272 (351)
Q Consensus       204 i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~--~~~~s~~~~~  272 (351)
                      +||+++++.+ ..+...|..+|.+++|+|++.+|++++ |+.|++||+++++....        ..+.  .++|+|+|.+
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            9999999877 667644778999999999999999999 55999999998866532        3333  4999999999


Q ss_pred             eeeeec-cceeeEEEeeecee
Q psy519          273 AATLAA-NSRVRTLREMHEIV  292 (351)
Q Consensus       273 ~~~~~~-~~~~~~~~~~~~~~  292 (351)
                      +++++. ++.   +++|+...
T Consensus       275 l~~~s~~d~~---i~v~~~~~  292 (343)
T 3lrv_A          275 MIAYSNESNS---LTIYKFDK  292 (343)
T ss_dssp             EEEEETTTTE---EEEEEECT
T ss_pred             EEEecCCCCc---EEEEEEcc
Confidence            999877 664   55555433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-30  Score=225.00  Aligned_cols=270  Identities=15%  Similarity=0.136  Sum_probs=213.6

Q ss_pred             cCCCccceEEEEECCC---CcE-EEEeCCCcEEEEeCCC-Ceee-EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy519           46 TSGHDMTVWSVEACSK---GLA-LTGSRDTTARLWSLEQ-MYPL-RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS  119 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~---~~~-~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  119 (351)
                      +.+|.+.|++++|+|+   |.+ ++++.|+.|++||+++ ++.+ ..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence            6789999999999999   466 9999999999999987 5544 67888999999999999999999999999999999


Q ss_pred             CCCCceeEEeccCCCCeEEEEE--ccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc
Q psy519          120 ITDGASVRVFSDHVSPVLSIAF--SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                      +++++... +..|...|.+++|  +|++++|++++.   |+.|++||+++++.+..+..+. .+.++.+.  ...+++++
T Consensus       115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~  187 (368)
T 3mmy_A          115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSW---DKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVAT  187 (368)
T ss_dssp             TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEET---TSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEE
T ss_pred             cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccC---CCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEe
Confidence            99988766 4569999999999  899999999999   9999999999999888887664 56666665  45788888


Q ss_pred             CCCeEEEEEcCCCcEEEEe-eccCCCCEEEEEEcCCCCE----EEEEeCCCeEEEEeCCCCce---eee-----e-----
Q psy519          198 EDGLVLTHELTTGRVISRF-HLQEHEPVTSLVWSVTGET----LVTGSLTGTVQFYGWPSASK---IGI-----G-----  259 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~~~~~~~~---~~~-----~-----  259 (351)
                      .++.+.+|+++........ ..........+.+.++...    +++++.||.|++|++.....   ...     .     
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence            8999999999876544333 2223356677777665544    99999999999999988632   111     1     


Q ss_pred             -------ecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee------EEEEecCCceeeccEEEecCCccccc
Q psy519          260 -------VYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES------FIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       260 -------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                             .+..++|+|++..+++++.++.   +++|+..++.......      ..+.|+|++.++... ..++..+.++
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-s~d~~~~~~~  343 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGR---FSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA-SSYDWSKGHE  343 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSC---EEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE-ECCCSTTCGG
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCe---EEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE-eccccccccc
Confidence                   5788999999999999998875   5666665554332211      127899999887655 3444444444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.2e-31  Score=222.11  Aligned_cols=237  Identities=15%  Similarity=0.119  Sum_probs=174.6

Q ss_pred             CcCCCCccceEEeeecCCccc--------------cEEEEecCCCceEEEecCCccCCCccceEEEEECCCCcEEEEe--
Q psy519            5 HLNHGDHKHFIQNSFKPETVE--------------DVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGS--   68 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~--------------~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--   68 (351)
                      +.-++|..+|..++|.|+..+              ..|+.+..|..+.-+.+.   .+|...|+.+   ++++++..+  
T Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s---~g~~~~v~~l---~~g~lv~ss~~  153 (356)
T 2w18_A           80 YTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK---SGNIKAVLGL---TKRRLVSSSGT  153 (356)
T ss_dssp             EEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE---EEEEEEEEEE---TTTEEEEEESS
T ss_pred             EEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe---CCCeEEEEec---CCCcEEEeccc
Confidence            345678888999999995211              122222222222222222   2344455554   567774443  


Q ss_pred             -CCCcEEEEeC-CCCeeeEEeeCCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEeCCCCceeEEeccCC---CCeEEEE
Q psy519           69 -RDTTARLWSL-EQMYPLRIFVGHKQDVTCARFHP---KITYIGTGSYDKAVRLWSITDGASVRVFSDHV---SPVLSIA  140 (351)
Q Consensus        69 -~d~~i~vw~~-~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~  140 (351)
                       .|+.|++|++ .+++.+..+..|...++.++|+|   ++.+|++++.|++|++||+.+++.++++.+|.   ..+.+++
T Consensus       154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred             CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence             4999999999 55888888888999999999999   77999999999999999999999999997643   4677889


Q ss_pred             EccCCCEEEEEec---------CCCCCeEEEEEccCCceeEEe-----ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          141 FSPCGKYLASGGT---------GSYDKAVRLWSITDGASVRVF-----SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       141 ~~~~~~~l~~~~~---------~~~d~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      |+|+|.++++++.         ++.|++|++||..+++.+..+     .+|...+.+..+  ++.++++++.|+.|+|||
T Consensus       234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEE
Confidence            9999998754221         223999999999999877655     356555544444  378899999999999999


Q ss_pred             cCCCcEEEEeeccCCCC-EEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          207 LTTGRVISRFHLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      +.+++.+.++. .|... +..++|+|||++|++|+.|++|+|||+
T Consensus       312 l~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          312 LLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999886 34444 456899999999999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=4e-30  Score=222.75  Aligned_cols=229  Identities=12%  Similarity=0.111  Sum_probs=184.0

Q ss_pred             ceEEeeecCCccccEE-EEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC-eeeEE
Q psy519           13 HFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM-YPLRI   86 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~-~~~~~   86 (351)
                      .+..++++++  ++.+ ++++.++.|++||..+.    ...+...|.++.|+++...+  ..++.|++||+.++ +.+..
T Consensus        60 ~~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~  135 (355)
T 3vu4_A           60 HLSKVRMLHR--TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITD  135 (355)
T ss_dssp             CCCEEEECTT--SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSC
T ss_pred             CeEEEEEcCC--CCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEE
Confidence            4677888888  7777 56777899999999877    33467799999998875433  34789999999988 66666


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEE--EeCCCcEEEEeCCCCc----------------eeEEeccCCCCeEEEEEccCCCEE
Q psy519           87 FVGHKQDVTCARFHPKITYIGT--GSYDKAVRLWSITDGA----------------SVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        87 ~~~~~~~i~~i~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      +..   +...+++++  .++++  |+.+|.|++||+.+++                .+..+.+|...|.+++|+|++++|
T Consensus       136 ~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l  210 (355)
T 3vu4_A          136 DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV  210 (355)
T ss_dssp             CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred             ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence            554   444566777  56665  5889999999999765                267888999999999999999999


Q ss_pred             EEEecCCCCCe-EEEEEccCCceeEEec-c-CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE----------
Q psy519          149 ASGGTGSYDKA-VRLWSITDGASVRVFS-D-HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR----------  215 (351)
Q Consensus       149 ~~~~~~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------  215 (351)
                      ++++.   |+. |++||+++++.+..+. + |...|.+++|+|++++|++++.|+.|++||++.+.....          
T Consensus       211 ~s~s~---d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~  287 (355)
T 3vu4_A          211 ATCSQ---DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK  287 (355)
T ss_dssp             EEEET---TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred             EEEeC---CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence            99999   998 9999999999999997 4 999999999999999999999999999999976532110          


Q ss_pred             ----------eecc--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          216 ----------FHLQ--EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       216 ----------~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                                +...  ...+...++|+++++.|++++.||.+++|++..+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                      1111  1123467999999999999999999999997653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.2e-29  Score=224.21  Aligned_cols=277  Identities=12%  Similarity=0.029  Sum_probs=212.8

Q ss_pred             ccceEEeeecCCcccc-EEEEec----CCC----ceEEEec--CCc-------cCCCccceEEEEECC------------
Q psy519           11 HKHFIQNSFKPETVED-VLANLE----SQK----NLQSRYL--PYY-------TSGHDMTVWSVEACS------------   60 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~-~l~~~~----~~~----~i~i~~~--~~~-------~~~~~~~i~~~~~~~------------   60 (351)
                      ...+...+|++.  |. ++++|+    .+|    .+++||+  .++       +.+|...+..+++.+            
T Consensus        62 ~~~~~~~~w~~~--g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           62 AQEVQPAAWSAL--GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             GGGCCHHHHHTT--TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCcCHHHHHhc--CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            357788899988  64 565765    467    8999999  654       445666666666553            


Q ss_pred             ---CCcEEEEeCC------CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEE
Q psy519           61 ---KGLALTGSRD------TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK---AVRLWSITDGASVRV  128 (351)
Q Consensus        61 ---~~~~~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~  128 (351)
                         ..+++.++.+      +.|++||+.. .....+..|...+.+++|+|+|+.|++++.++   .|++||+.+++.. .
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~  217 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q  217 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence               4455555443      7999999975 45667778899999999999999999999875   9999999988765 4


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eEEEE
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LVLTH  205 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~  205 (351)
                      +..+...+.+++|+|+|+.|+.......+..|++||+++++. ..+..|...+..++|+|||++|++++. ++  .|++|
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            556778999999999999888443222234599999988765 567778889999999999999888876 44  68888


Q ss_pred             EcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeee---eecceeEEecCCceeeeeecc
Q psy519          206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT---GTVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       206 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~  279 (351)
                      |+.+++.. .+. .+...+..++|+|+|++|++++.+   ..|++||+.+++....   ..+..++|+|+|..++++..+
T Consensus       297 d~~~~~~~-~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          297 NINGGAPQ-RIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             ETTSSCCE-ECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred             ECCCCCEE-EEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcC
Confidence            99877643 332 344678899999999999888764   5899999998876543   245678999999999998887


Q ss_pred             ceeeEEEeeeceeCc
Q psy519          280 SRVRTLREMHEIVGP  294 (351)
Q Consensus       280 ~~~~~~~~~~~~~g~  294 (351)
                      +....+.+|+...+.
T Consensus       375 ~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          375 GMGSVLNLVSTDGRF  389 (415)
T ss_dssp             TTEEEEEEEETTSCC
T ss_pred             CCccEEEEEECCCCc
Confidence            766678888865443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.8e-28  Score=218.94  Aligned_cols=311  Identities=10%  Similarity=-0.024  Sum_probs=236.5

Q ss_pred             eecCCccccEEEEecCCCceEEEecCCc-----cC-CCccceEEEEECCCCcE-EEEeCCCcEEEEeC--CCCeeeEEee
Q psy519           18 SFKPETVEDVLANLESQKNLQSRYLPYY-----TS-GHDMTVWSVEACSKGLA-LTGSRDTTARLWSL--EQMYPLRIFV   88 (351)
Q Consensus        18 ~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~-~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~--~~~~~~~~~~   88 (351)
                      +|+|+  +.++++++.+++|.+||..+.     +. ++.  +..++|+|+|++ ++++.|+.|++||+  .+++.+..+.
T Consensus       144 ~~~p~--~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLP--NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGG--GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCC--CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            48899  999999999999999999876     22 333  889999999988 88999999999999  8888888887


Q ss_pred             CCCCCeEEEEEeC----CCCEEEEEeC-CCcEEEEeCCCCceeEEeccC-----------CCCeEEEEEccCCCEEEEEe
Q psy519           89 GHKQDVTCARFHP----KITYIGTGSY-DKAVRLWSITDGASVRVFSDH-----------VSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        89 ~~~~~i~~i~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~  152 (351)
                      . ...+..++|+|    +|+++++++. +++|.+||..+++++..+..+           ...+.++.++|++..+++..
T Consensus       220 ~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 I-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             C-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             c-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            4 45679999999    9999998885 899999999999988877542           23788999999877665544


Q ss_pred             cCCCCCeEEEEEccCCceeE--EeccCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeecc---CCCCEEE
Q psy519          153 TGSYDKAVRLWSITDGASVR--VFSDHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQ---EHEPVTS  226 (351)
Q Consensus       153 ~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~  226 (351)
                      ..  ++.|.+||+.+.+.+.  .+ .+...+..+.|+|+|++++++ ..++.|.+||+.+++.+..+...   |......
T Consensus       299 ~~--~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          299 KE--TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             TT--TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             CC--CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence            32  8999999998866544  34 345667889999999977655 45889999999999988877642   3222333


Q ss_pred             EEEcCC-CCEEEEEe-CCCeEEEEeCCC-------Cceeeeeec-----ceeEEecCCceeeeeeccc----eeeEEEee
Q psy519          227 LVWSVT-GETLVTGS-LTGTVQFYGWPS-------ASKIGIGVY-----PRCAAQPVGFEAATLAANS----RVRTLREM  288 (351)
Q Consensus       227 ~~~~~~-~~~l~~~~-~dg~i~i~~~~~-------~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~----~~~~~~~~  288 (351)
                      + ++|+ +.+++++. .|++|.+||+.+       .+.++....     ..++++|+++.+.+....+    ....+.+|
T Consensus       376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence            3 4676 66667765 589999999988       666665433     4589999999998876322    24578888


Q ss_pred             eceeCceE-EE--------------eeEEEEecCCceeeccEEE----ecCCccccceeeeeeeeecC
Q psy519          289 HEIVGPVV-VV--------------ESFIVEIRPDKWYEANLIV----LDDDLKECNLETYSQMIPVP  337 (351)
Q Consensus       289 ~~~~g~~~-~~--------------~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~  337 (351)
                      +..+++.. ..              .....+|+|++.++....-    .++.|.+||.++......++
T Consensus       455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            87766543 21              1123689999998764422    25889999999887655444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1e-27  Score=218.24  Aligned_cols=291  Identities=11%  Similarity=0.048  Sum_probs=223.9

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEec--CCc----cCCCccceEEEEECC----CCcE-EEEe-CCCcEEEEeCCCC
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYL--PYY----TSGHDMTVWSVEACS----KGLA-LTGS-RDTTARLWSLEQM   81 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~--~~~----~~~~~~~i~~~~~~~----~~~~-~~~~-~d~~i~vw~~~~~   81 (351)
                      +..++|+|+  |++|++++.++.|.+||+  .+.    ...+...+..++|+|    +|++ ++++ .+++|.+||..++
T Consensus       181 ~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          181 VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             EEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             cceEEECCC--CCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            789999999  999999999999999999  554    122445678999999    9987 5555 5899999999999


Q ss_pred             eeeEEeeCC-----------CCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeE--EeccCCCCeEEEEEccCCCE
Q psy519           82 YPLRIFVGH-----------KQDVTCARFHPKIT-YIGTGSYDKAVRLWSITDGASVR--VFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        82 ~~~~~~~~~-----------~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~  147 (351)
                      +++..+..+           ...+..+.++|++. ++++...++.|.+||+.+.+.+.  .+. +...+.+++|+|+|++
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCE
Confidence            988877642           23688999999765 45666778999999998876544  333 5567888999999998


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEecc----CCCCEEEEEECCC-CcEEEEEc-CCCeEEEEEcCC-------CcEEE
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPC-GKYLASGG-EDGLVLTHELTT-------GRVIS  214 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~  214 (351)
                      +++++..  ++.|.+||+.+++.+..+..    |.+....+ ++|+ +..++++. .|+.|.+||+.+       .+.++
T Consensus       338 l~va~~~--~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~  414 (543)
T 1nir_A          338 FMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  414 (543)
T ss_dssp             EEEEEGG--GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEecC--CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence            8766532  78999999999998887764    54433333 4676 56666665 579999999988       78888


Q ss_pred             EeeccCCCCEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCcee-ee-------------eecceeEEecCCcee
Q psy519          215 RFHLQEHEPVTSLVWSVTGETLVTGS-------LTGTVQFYGWPSASKI-GI-------------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~~~~~~~~~-~~-------------~~~~~~~~s~~~~~~  273 (351)
                      ++. .+...+..+.++|++++|++++       .+++|.+||+.+++.. ..             ..+.++.|+|+|..+
T Consensus       415 ~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~  493 (543)
T 1nir_A          415 ELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  493 (543)
T ss_dssp             EEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred             EEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence            886 3446678899999999999987       2679999999988765 22             345678999999998


Q ss_pred             eeeecc--ceeeEEEeeeceeCceEEEeeEEEEecCCcee
Q psy519          274 ATLAAN--SRVRTLREMHEIVGPVVVVESFIVEIRPDKWY  311 (351)
Q Consensus       274 ~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  311 (351)
                      .+....  .....+.+||..+++...........+|+|.+
T Consensus       494 ~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~~  533 (543)
T 1nir_A          494 WFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF  533 (543)
T ss_dssp             EEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred             EEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCeee
Confidence            877543  24578889999999866444322245566655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=6.2e-28  Score=228.96  Aligned_cols=296  Identities=11%  Similarity=0.041  Sum_probs=217.7

Q ss_pred             ccceEEeeecCCccccEEEEecC-CC-----ceEEEecCCc-----cCCCc------------------------cceEE
Q psy519           11 HKHFIQNSFKPETVEDVLANLES-QK-----NLQSRYLPYY-----TSGHD------------------------MTVWS   55 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~-~~-----~i~i~~~~~~-----~~~~~------------------------~~i~~   55 (351)
                      ...+.+++||||  |++|++++. ++     .|++|++.++     ...+.                        ..+.+
T Consensus        36 ~~~~~~~~~Spd--G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPD--GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTT--SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecC--CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            467899999999  999999988 87     8999999876     22222                        33789


Q ss_pred             EEECCCCcE-EEEeCCCcEEEEeCCCCe--eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC
Q psy519           56 VEACSKGLA-LTGSRDTTARLWSLEQMY--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH  132 (351)
Q Consensus        56 ~~~~~~~~~-~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  132 (351)
                      ++|+|||++ ++++. +.|++||+.+++  ....+..|...+..++|+|||++|++++ ++.|++||+.+++.......+
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            999999988 55554 999999999873  3445667888899999999999999887 568999999988766554433


Q ss_pred             CCC----------------eEEEEEccCCCEEEEEecCCCCC---------------------------------eEEEE
Q psy519          133 VSP----------------VLSIAFSPCGKYLASGGTGSYDK---------------------------------AVRLW  163 (351)
Q Consensus       133 ~~~----------------i~~~~~~~~~~~l~~~~~~~~d~---------------------------------~i~i~  163 (351)
                      ...                +.+++|+|||++|++++.   |+                                 .|.+|
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            332                477999999999998876   54                                 78999


Q ss_pred             EccC-CceeEEec--cCCCCEEEEEECCCCcEEEEEcC-----CCeEEEEEcCCCcEEEEeeccCCC---CEEEEEEcCC
Q psy519          164 SITD-GASVRVFS--DHVSPVLSIAFSPCGKYLASGGE-----DGLVLTHELTTGRVISRFHLQEHE---PVTSLVWSVT  232 (351)
Q Consensus       164 d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~  232 (351)
                      |+.+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++....+......   .+..++|+||
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9988 77554433  36678899999 99999987653     567999999998877665433222   4568999999


Q ss_pred             CCEEEEEeCCCeEEEEeCC-CCceeee-----eeccee-EEecCCceeeeeeccceeeEEEeeecee-Cc-eEEEe----
Q psy519          233 GETLVTGSLTGTVQFYGWP-SASKIGI-----GVYPRC-AAQPVGFEAATLAANSRVRTLREMHEIV-GP-VVVVE----  299 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~-~~~~~~~-----~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~----  299 (351)
                      |+++++++.||.+++|.+. .++ ...     ..+..+ .|+|++..+++.+.......+++|.... |. ...+.    
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~  426 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPG  426 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCS
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCC
Confidence            9998999999977777665 233 222     223344 5999999887766655433555665542 22 11111    


Q ss_pred             eEEEEecCCceeeccE
Q psy519          300 SFIVEIRPDKWYEANL  315 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~  315 (351)
                      .....|+||+.+....
T Consensus       427 ~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          427 MHSASFARNASVYVDS  442 (741)
T ss_dssp             EEEEEECTTSSEEEEE
T ss_pred             ceEEEECCCCCEEEEE
Confidence            1236899999876544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4e-27  Score=208.03  Aligned_cols=241  Identities=15%  Similarity=0.080  Sum_probs=188.8

Q ss_pred             ccEEEEecCC------CceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCC---cEEEEeCCCCeeeEEeeCC
Q psy519           25 EDVLANLESQ------KNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDT---TARLWSLEQMYPLRIFVGH   90 (351)
Q Consensus        25 ~~~l~~~~~~------~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~---~i~vw~~~~~~~~~~~~~~   90 (351)
                      +..+++++.+      +.|++||+...    +.+|...+.+++|+|+|+. ++++.++   .|++||+.+++.. .+..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            4456655543      79999999865    5678899999999999987 7787775   9999999998765 56678


Q ss_pred             CCCeEEEEEeCCCCEEE-EEeCCCc--EEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC
Q psy519           91 KQDVTCARFHPKITYIG-TGSYDKA--VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      ...+.+++|+|||+.|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+|++|++++.......|++||+.+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            88999999999999887 6666554  99999988775 56667888999999999999998877511122788889887


Q ss_pred             CceeEEeccCCCCEEEEEECCCCcEEEEEcCC---CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-
Q psy519          168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGED---GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-  243 (351)
Q Consensus       168 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  243 (351)
                      ++. ..+..+...+..++|+|+|++|++++.+   ..|++||+.+++.. .+. .+ ..+.+++|+|+|++|++++.++ 
T Consensus       301 ~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~-~~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          301 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-ST-FLDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             SCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CS-SSCEEEEECTTSSEEEEEEEETT
T ss_pred             CCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CC-CCcCCeEEcCCCCEEEEEEcCCC
Confidence            764 4455667788999999999999988764   58999999988764 332 22 4899999999999999988876 


Q ss_pred             --eEEEEeCCCCceeee----eecceeEEecCCc
Q psy519          244 --TVQFYGWPSASKIGI----GVYPRCAAQPVGF  271 (351)
Q Consensus       244 --~i~i~~~~~~~~~~~----~~~~~~~~s~~~~  271 (351)
                        .|++||+..+.....    ..+..++|+|-..
T Consensus       377 ~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          377 GSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred             ccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence              899999986554332    4566778887543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.7e-27  Score=197.52  Aligned_cols=171  Identities=9%  Similarity=0.014  Sum_probs=134.5

Q ss_pred             CCCcEEEEeC-CCCceeEEeccCCCCeEEEEEcc---CCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC---CCEEE
Q psy519          111 YDKAVRLWSI-TDGASVRVFSDHVSPVLSIAFSP---CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV---SPVLS  183 (351)
Q Consensus       111 ~dg~i~i~d~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~i~~  183 (351)
                      .|+.|++|++ .+++.+..+..|...++.++|+|   ++..|++++.   |++|+|||+++++.++.+..|.   ..+.+
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~---D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~  231 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI---MNNIVIWNLKTGQLLKKMHIDDSYQASVCH  231 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET---TSEEEEEETTTCCEEEEEECCC---CCCEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC---CCcEEEEECCCCcEEEEEcCCCcceeeeEE
Confidence            3888999998 45777777778888888889998   7799999999   9999999999999999997654   35777


Q ss_pred             EEECCCCcEE------------EEEcCCCeEEEEEcCCCcEEEEeec----cCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          184 IAFSPCGKYL------------ASGGEDGLVLTHELTTGRVISRFHL----QEHEPVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       184 ~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                      ++|+|+|+++            ++|+.|+.|++||..+++.+..+..    .+...+.+..+  ++.++++++.|++|+|
T Consensus       232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAI  309 (356)
T ss_dssp             EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEE
T ss_pred             EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEE
Confidence            8999999886            5677899999999999988765531    22333444444  4889999999999999


Q ss_pred             EeCCCCceeeee-----ecc-eeEEecCCceeeeeeccceeeEEEeee
Q psy519          248 YGWPSASKIGIG-----VYP-RCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       248 ~~~~~~~~~~~~-----~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ||+.+++.++..     .+. .++|||+|+.+++++.|+   ++++|+
T Consensus       310 WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~---TIklWd  354 (356)
T 2w18_A          310 WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG---NIFVYH  354 (356)
T ss_dssp             EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS---CEEEEE
T ss_pred             EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC---cEEEec
Confidence            999999987663     233 479999999999998877   455655

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=1.6e-26  Score=199.71  Aligned_cols=261  Identities=8%  Similarity=-0.012  Sum_probs=209.8

Q ss_pred             cceEEeeecCCccccEEEEecC-------CCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeC
Q psy519           12 KHFIQNSFKPETVEDVLANLES-------QKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSL   78 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~-------~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~   78 (351)
                      ..+..++|+|+  ++++++++.       ++.|.+||..+.    .......+..++|+|+|+.  ++...++.|.+||+
T Consensus        41 ~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           41 KGAYEMAYSQQ--ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             SSEEEEEEETT--TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCccceEECCC--CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            45778999999  998887763       568999999876    1122345678999999974  56666899999999


Q ss_pred             CCCeeeEEeeCCCCC---------eEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE
Q psy519           79 EQMYPLRIFVGHKQD---------VTCARFHPKITYIGTGS--YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~---------i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  147 (351)
                      ++++.+..+..+...         +.+++|+|+++.+++++  .++.|.+||+.+++....+..+...+.+++|+|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            999988877654322         68899999999887776  4788999999999988888755666889999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEecc----CCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEEEEeeccCCC
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVISRFHLQEHE  222 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~  222 (351)
                      ++++..   ++.|.+||+.+++....+..    +...+..++|+|+++++++++. ++.|.+||+.+++.+..+....  
T Consensus       199 l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          199 LYTTNA---DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             EEEECT---TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             EEEEcC---CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence            999887   99999999999988877654    4556888999999997776655 5899999999999888776433  


Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeee----ecceeEEecCCceeeeeeccc
Q psy519          223 PVTSLVWSVTGETLVTGS-LTGTVQFYGWPSASKIGIG----VYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~  280 (351)
                       ...++|+|+++++++++ .++.|.+||..+++.+...    ....++|+|+|+.+.+....+
T Consensus       274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence             25799999999766655 6899999999998877653    345789999999877766654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1e-27  Score=226.82  Aligned_cols=297  Identities=12%  Similarity=0.043  Sum_probs=209.8

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCcc---ceEEEEECCCCcE-EEEeCC---------CcE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDM---TVWSVEACSKGLA-LTGSRD---------TTA   73 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~---~i~~~~~~~~~~~-~~~~~d---------~~i   73 (351)
                      ..+.+++|+|+  |+++++ +.||.|++|++.++     ...|..   .|.+++|+|||++ ++++.+         +.+
T Consensus        17 ~~~~~~~~spd--g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISD--TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSS--SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCC--CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            44688999999  997766 68999999999876     334443   4899999999987 666653         788


Q ss_pred             EEEeCCCCeeeEEee---CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCe--------------
Q psy519           74 RLWSLEQMYPLRIFV---GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPV--------------  136 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--------------  136 (351)
                      ++||+.+++. ..+.   .|...+..++|+|||+.|++++. +.|++||+.+++.......+...+              
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence            9999998875 3332   34445888999999999999885 899999999888776655443333              


Q ss_pred             ----EEEEEccCCCEEEEEecCC-------------------------------CCCeEEEEEccCCceeEEeccC----
Q psy519          137 ----LSIAFSPCGKYLASGGTGS-------------------------------YDKAVRLWSITDGASVRVFSDH----  177 (351)
Q Consensus       137 ----~~~~~~~~~~~l~~~~~~~-------------------------------~d~~i~i~d~~~~~~~~~~~~~----  177 (351)
                          .+++|+|||+.|++++...                               .+..|++||+.+++....+..+    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence                7899999999999887510                               0127999999988765666543    


Q ss_pred             --CCCEEEEEECCCCcEEEEEcC----CCeEEEEEcCCCcEEEEeeccCCCCE----EEEEEcCCCCEEEE--EeCCC--
Q psy519          178 --VSPVLSIAFSPCGKYLASGGE----DGLVLTHELTTGRVISRFHLQEHEPV----TSLVWSVTGETLVT--GSLTG--  243 (351)
Q Consensus       178 --~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg--  243 (351)
                        ...+..++|+|||+++++.+.    +..|++||+.+++....+...+...+    ..++|+|||+.|+.  +..++  
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence              567889999999998876643    35799999999887665543333333    37899999997765  44566  


Q ss_pred             ----eEEEEe-CCCCc---eeee----eecce-eEEecCCceeeeeeccceeeEEEeeeceeC---ceEEEe--------
Q psy519          244 ----TVQFYG-WPSAS---KIGI----GVYPR-CAAQPVGFEAATLAANSRVRTLREMHEIVG---PVVVVE--------  299 (351)
Q Consensus       244 ----~i~i~~-~~~~~---~~~~----~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~--------  299 (351)
                          .|.+|| ..+++   ....    ..+.. ++|+|+|+.+++.+.++....+++|....+   ....+.        
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  411 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT  411 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC
T ss_pred             cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCC
Confidence                577787 44444   2221    11222 689999999987776642234555554321   111111        


Q ss_pred             eEEEEecCCceeec
Q psy519          300 SFIVEIRPDKWYEA  313 (351)
Q Consensus       300 ~~~~~~~~~~~~~~  313 (351)
                      -....|+|++.+..
T Consensus       412 ~~~~~~spdg~~l~  425 (723)
T 1xfd_A          412 YFSASFSHSMDFFL  425 (723)
T ss_dssp             CCEEEECTTSSEEE
T ss_pred             eEEEEECCCCCEEE
Confidence            12368999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.6e-25  Score=191.89  Aligned_cols=268  Identities=13%  Similarity=0.020  Sum_probs=196.3

Q ss_pred             eecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCee-eEEeeC
Q psy519           18 SFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYP-LRIFVG   89 (351)
Q Consensus        18 ~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~-~~~~~~   89 (351)
                      .|.++ .+..+++...++.|.+||..+.     ...+...+ .++|+|+|++  +++..++.|.+||+.+++. ...+..
T Consensus         4 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTT-SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CC-CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCC-CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            45555 1444677788999999999876     33344555 9999999975  4445589999999999887 667766


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe-EEEEEc
Q psy519           90 HKQDVTCARFHPKITYIGTGSYDK---AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA-VRLWSI  165 (351)
Q Consensus        90 ~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~-i~i~d~  165 (351)
                      +..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++++...  ++. |.+|++
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~--~~~~i~~~~~  158 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRS--SANTVRRFKI  158 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEET--TTTEEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecC--CCceEEEEEE
Confidence            666665599999999999655553   899999999988887764 4556899999999877666441  577 999998


Q ss_pred             cCCcee----EEeccCCCCEEEEEECCCCcEEEE-EcCCCeEEEEEcCCCcE---EEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          166 TDGASV----RVFSDHVSPVLSIAFSPCGKYLAS-GGEDGLVLTHELTTGRV---ISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       166 ~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      .....+    .........+..++|+|+|+++++ +..++.|.+||+.+++.   +..+.  ....+..++|+|+|++|+
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEE
Confidence            764332    111233456889999999996655 45689999999998887   66654  346778999999999776


Q ss_pred             EEe-CCCeEEEEeCCCCceeeee-----------e---cceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          238 TGS-LTGTVQFYGWPSASKIGIG-----------V---YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       238 ~~~-~dg~i~i~~~~~~~~~~~~-----------~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      +++ .++.|.+||+.+++.....           .   ...++|+|+|+.+++...++  ..+.+|+.....
T Consensus       237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~  306 (331)
T 3u4y_A          237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKV  306 (331)
T ss_dssp             EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCE
T ss_pred             EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCc
Confidence            655 4788999999998772211           1   12369999999887666544  356777765544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.8e-26  Score=192.84  Aligned_cols=244  Identities=15%  Similarity=0.085  Sum_probs=187.6

Q ss_pred             ecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC-CeeeEEeeCC-CCCeEEEEEeCCCC
Q psy519           31 LESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGH-KQDVTCARFHPKIT  104 (351)
Q Consensus        31 ~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~-~~~i~~i~~~~~~~  104 (351)
                      ++.++.|++|++...    ...|...|.+++|+|+|+++..+.++.|++||+.+ ++.......+ ...+.+++|+|+++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            456889999999877    56688899999999999984444589999999999 8777666555 36788999999999


Q ss_pred             EEEEEeC--CC--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEE-EEecCCCCCeEEEEEccC-CceeEEeccCC
Q psy519          105 YIGTGSY--DK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGTGSYDKAVRLWSITD-GASVRVFSDHV  178 (351)
Q Consensus       105 ~l~~~~~--dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~  178 (351)
                      +|++++.  ++  .|..+++.+++ ...+..+ ..+..++|+|++++++ ++..   ++.+++|+++. +.....+..+.
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIR---DQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEE---TTEEEEEEEETTTCCEEECCCSS
T ss_pred             EEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECC---CCceEEEEEECCCCcceEcccCC
Confidence            9999883  34  45555555554 3444433 4589999999999887 5666   89899998643 33455666778


Q ss_pred             CCEEEEEECCCCcEEEEEc-CCCeEEEEEcC-CCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-----------CeE
Q psy519          179 SPVLSIAFSPCGKYLASGG-EDGLVLTHELT-TGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-----------GTV  245 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i  245 (351)
                      ..+..++|+|++++++.++ .++.+.+|++. .+.....+. .+...+..++|+|++++|++++.+           +.|
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            8899999999999887665 58889999886 455555553 445678899999999999888765           569


Q ss_pred             EEEeCCCCceeee-------eecceeEEecCCceeeeeeccc
Q psy519          246 QFYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       246 ~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ++||+.+++....       ..+..++|+|++..+++++.+.
T Consensus       252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999998765432       2456789999999988887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=4.2e-26  Score=215.25  Aligned_cols=275  Identities=13%  Similarity=0.108  Sum_probs=207.0

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC-----Ce
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ-----MY   82 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-----~~   82 (351)
                      ..|.+++|||+  +.++++.  ++.+++||+.+.    ...+...+.+++|+|+|+.+....++.|++|++.+     ++
T Consensus        82 ~~v~~~~~spd--~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR--GLVVLFT--QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT--TEEEEEE--TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC--CeEEEEE--CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCC
Confidence            57999999999  7777664  489999999876    44566778889999999884446789999999998     77


Q ss_pred             eeEEeeCCCCC--------------eEEEEEeCCCCEEEEEe---------------------------------CCCcE
Q psy519           83 PLRIFVGHKQD--------------VTCARFHPKITYIGTGS---------------------------------YDKAV  115 (351)
Q Consensus        83 ~~~~~~~~~~~--------------i~~i~~~~~~~~l~~~~---------------------------------~dg~i  115 (351)
                      .......+...              +.++.|+|||++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            66544444433              47899999999999987                                 44679


Q ss_pred             EEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCCCCC-----eEEEEEccCCceeEEec--cCCC---CEEE
Q psy519          116 RLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-----AVRLWSITDGASVRVFS--DHVS---PVLS  183 (351)
Q Consensus       116 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~d~-----~i~i~d~~~~~~~~~~~--~~~~---~i~~  183 (351)
                      ++||+.+++......  .+...+.+++|+|||+.|++++.   ++     .|++||+.+++....+.  .+..   .+..
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            999999887654442  45677999999999999998776   54     89999999884333332  1221   2457


Q ss_pred             EEECC--CCcEEEEEcCCCeEEEEEcC-CCcEEEEeeccCCCCEEE-EEEcCCCCEEEEEeC-CC----eEEEEeCCCCc
Q psy519          184 IAFSP--CGKYLASGGEDGLVLTHELT-TGRVISRFHLQEHEPVTS-LVWSVTGETLVTGSL-TG----TVQFYGWPSAS  254 (351)
Q Consensus       184 ~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~i~~~~~~~  254 (351)
                      +.|+|  ||+++++++.++.+++|++. ++..+..+. .+...+.. ++|+|+++.|+.++. ++    .|..||+.+++
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            89999  99999999999999999876 566666664 44556766 899999998766554 44    67777877765


Q ss_pred             eeee---eecceeEEecCCceeeeeeccc-eeeEEEeeeceeCc
Q psy519          255 KIGI---GVYPRCAAQPVGFEAATLAANS-RVRTLREMHEIVGP  294 (351)
Q Consensus       255 ~~~~---~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~g~  294 (351)
                      ....   ..+..++|||+|+.+++...+. ....+.+|+..++.
T Consensus       394 ~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          394 TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            3322   3456789999999888775543 34568888877765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=4e-24  Score=183.74  Aligned_cols=265  Identities=13%  Similarity=0.100  Sum_probs=185.8

Q ss_pred             ccEE-EEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC-CcEEEEeCC--CCe--eeEEeeCC
Q psy519           25 EDVL-ANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD-TTARLWSLE--QMY--PLRIFVGH   90 (351)
Q Consensus        25 ~~~l-~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d-~~i~vw~~~--~~~--~~~~~~~~   90 (351)
                      ++++ ++++.++.|++|++...       ...+...+.+++|+|++++ ++++.+ +.|.+|++.  +++  .+..+..+
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            3444 44477999999998522       3346677889999999986 666665 999999997  444  34445444


Q ss_pred             CCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCC---CCceeEEeccCCCCeEEEEEccCCCEEEEEe-cCCCCCeEEEEEc
Q psy519           91 KQDVTCARFHPKITYIGTGSY-DKAVRLWSIT---DGASVRVFSDHVSPVLSIAFSPCGKYLASGG-TGSYDKAVRLWSI  165 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~d~~i~i~d~  165 (351)
                      . .+..++|+|+++++++++. ++.|.+||+.   ..+....+.. ...+.+++|+|+++++++++ .   ++.|.+||+
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~  158 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALK---QDRICLFTV  158 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGG---GTEEEEEEE
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCC---CCEEEEEEe
Confidence            4 7889999999998876665 7889999994   3344444443 35688999999999888877 5   899999999


Q ss_pred             cC-CceeE----Eec-cCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCC--CcE--EEEee-ccC----CCCEEEEEE
Q psy519          166 TD-GASVR----VFS-DHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTT--GRV--ISRFH-LQE----HEPVTSLVW  229 (351)
Q Consensus       166 ~~-~~~~~----~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~-~~~----~~~v~~~~~  229 (351)
                      .+ ++...    ... .....+..++|+|++++++++ ..++.+.+|++..  ++.  ...+. ...    ...+..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 54332    222 234578899999999977655 4789999999953  432  22222 111    235778999


Q ss_pred             cCCCCEEEE-EeCCCeEEEEeCC--CC--ceeee----eecceeEEecCCceeeeeeccceeeEEEeee--ceeCceE
Q psy519          230 SVTGETLVT-GSLTGTVQFYGWP--SA--SKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMH--EIVGPVV  296 (351)
Q Consensus       230 ~~~~~~l~~-~~~dg~i~i~~~~--~~--~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~  296 (351)
                      +|++++|++ +..++.|.+|++.  ++  +.+..    ..+..++|+|+|..++++..+.  ..+.+|+  ..+|...
T Consensus       239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS--HHISVYEIVGEQGLLH  314 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT--CEEEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC--CeEEEEEEcCCCceee
Confidence            999998875 4478999999998  33  22222    2356789999999887776432  2455663  3355433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=3e-25  Score=217.63  Aligned_cols=305  Identities=9%  Similarity=-0.002  Sum_probs=233.4

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc----cCC-----------CccceEEEEEC-CCCcE-EEEeCCCcEEE
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSG-----------HDMTVWSVEAC-SKGLA-LTGSRDTTARL   75 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~-----------~~~~i~~~~~~-~~~~~-~~~~~d~~i~v   75 (351)
                      .+...+|||+  |++|+++ .++.|++|++...    +..           |...+.+++|+ |+|+. ++++ ++.+++
T Consensus       246 ~~~~~~~SpD--G~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~  321 (1045)
T 1k32_A          246 DYYPRHLNTD--GRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI  321 (1045)
T ss_dssp             SSCEEEEEES--SSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred             CcceeeEcCC--CCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence            3567799999  9999987 5889999998443    122           34478999999 99987 5554 899999


Q ss_pred             EeCCCCeeeEEeeCCCC-CeEEEEEeCCCCEEEEEeCCCcEE-EEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec
Q psy519           76 WSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVR-LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      |++.+++.. .+..|.. .+..++|+ +++.|++++.++.+. +||+.+++... +..+...+..++|+|+|++|++++.
T Consensus       322 ~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~  398 (1045)
T 1k32_A          322 QDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVAND  398 (1045)
T ss_dssp             ECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEET
T ss_pred             EcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECC
Confidence            999887654 3556766 89999999 999999998888888 99998776544 4477789999999999999999988


Q ss_pred             CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC----------eEEEEEcCCCcEEEEeeccCCCC
Q psy519          154 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG----------LVLTHELTTGRVISRFHLQEHEP  223 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~  223 (351)
                         ++.|++||+.+++.......|...+..++|+|||++|++++.++          .|++||+.+++ ...+. .+...
T Consensus       399 ---~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~  473 (1045)
T 1k32_A          399 ---RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TENSH  473 (1045)
T ss_dssp             ---TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CSSSB
T ss_pred             ---CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CCCcc
Confidence               99999999999988877778888899999999999998887644          89999998877 44443 45567


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------------------------e-e--
Q psy519          224 VTSLVWSVTGETLVTGSLTGTVQFYGWPSASK-------------------------------------------I-G--  257 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-------------------------------------------~-~--  257 (351)
                      +..++|+|||++|++++.++...+|+......                                           + .  
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~  553 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN  553 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC
Confidence            88999999999999998877666665322111                                           0 0  


Q ss_pred             --eeecceeEEecCCceeeee----------eccceeeEEEeeeceeCceEEEee--EEEEecCCceeeccEEEecCCcc
Q psy519          258 --IGVYPRCAAQPVGFEAATL----------AANSRVRTLREMHEIVGPVVVVES--FIVEIRPDKWYEANLIVLDDDLK  323 (351)
Q Consensus       258 --~~~~~~~~~s~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~  323 (351)
                        ...+..+.++|+|..++..          ........+..|+..+++...+..  ..+.|+||+.++...  .++.+.
T Consensus       554 ~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~--~~~~i~  631 (1045)
T 1k32_A          554 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVR--KDDGKI  631 (1045)
T ss_dssp             CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEE--ETTSCE
T ss_pred             CCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEE--cCCcEE
Confidence              1233467889999866641          223334567788877776554432  236899999986643  566899


Q ss_pred             ccceeeee
Q psy519          324 ECNLETYS  331 (351)
Q Consensus       324 ~~~~~~~~  331 (351)
                      .|++.+..
T Consensus       632 ~~d~~~~~  639 (1045)
T 1k32_A          632 YTFPLEKP  639 (1045)
T ss_dssp             EEEESSCT
T ss_pred             EEeCccCc
Confidence            99997765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.5e-24  Score=186.39  Aligned_cols=237  Identities=13%  Similarity=0.153  Sum_probs=172.8

Q ss_pred             CccceEEeeecCCccccEEEEecCC-CceEEEecC--Cc-------cCCCccceEEEEECCCCcE-EEEe-CCCcEEEEe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQ-KNLQSRYLP--YY-------TSGHDMTVWSVEACSKGLA-LTGS-RDTTARLWS   77 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~-~~i~i~~~~--~~-------~~~~~~~i~~~~~~~~~~~-~~~~-~d~~i~vw~   77 (351)
                      +...+.+++|+|+  +++|++++.+ +.|.+|++.  ..       ... ...+..++|+|++++ ++++ .++.|.+||
T Consensus        36 ~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           36 VPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             CSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            5567788999999  9988888776 899999997  32       122 237889999999986 4444 588999999


Q ss_pred             CC---CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCC-CceeE----Eec-cCCCCeEEEEEccCCCE
Q psy519           78 LE---QMYPLRIFVGHKQDVTCARFHPKITYIGTGS-YDKAVRLWSITD-GASVR----VFS-DHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        78 ~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~-~~~~~i~~~~~~~~~~~  147 (351)
                      +.   ..+....+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++...    .+. .....+.+++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            94   4444455543 34588999999999888877 789999999987 54432    222 23457889999999998


Q ss_pred             EEEEe-cCCCCCeEEEEEccC--Cce--eEEec---cC---CCCEEEEEECCCCcEEEE-EcCCCeEEEEEcC--CC--c
Q psy519          148 LASGG-TGSYDKAVRLWSITD--GAS--VRVFS---DH---VSPVLSIAFSPCGKYLAS-GGEDGLVLTHELT--TG--R  211 (351)
Q Consensus       148 l~~~~-~~~~d~~i~i~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~--~  211 (351)
                      +++++ .   ++.|.+||+..  ++.  .....   ..   ...+..++|+|++++|++ ...++.|.+||+.  ++  +
T Consensus       192 l~~~~~~---~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~  268 (343)
T 1ri6_A          192 AYCVNEL---NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  268 (343)
T ss_dssp             EEEEETT---TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             EEEEeCC---CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence            77665 4   89999999954  332  22222   11   235678999999987774 4578999999998  33  3


Q ss_pred             EEEEeeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCce
Q psy519          212 VISRFHLQEHEPVTSLVWSVTGETLVTGS-LTGTVQFYGW--PSASK  255 (351)
Q Consensus       212 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~--~~~~~  255 (351)
                      .+..+.  ....+..++|+|++++|++++ .++.|.+|++  .+++.
T Consensus       269 ~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          269 KEGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             EEEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             Eeeeec--CCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            333333  334488999999999888887 5799999954  45543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.4e-24  Score=186.11  Aligned_cols=258  Identities=12%  Similarity=-0.018  Sum_probs=198.1

Q ss_pred             cEEEEecCCCceEEEecCCc----cCCCcc---ceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCC-----C
Q psy519           26 DVLANLESQKNLQSRYLPYY----TSGHDM---TVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGH-----K   91 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~----~~~~~~---~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~-----~   91 (351)
                      ++|++++.++.|.+||..+.    ......   .+..++|+|+++.  +++..++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            57889999999999999876    111222   4788999999964  56667899999999999887766532     1


Q ss_pred             CCeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           92 QDVTCARFHPKITYIGTGS------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        92 ~~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      ..+..++|+|+++++++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++     ++.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-----~~~  155 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-----GRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-----SSS
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-----CCe
Confidence            2567899999999998886            579999999999888777764 4567889999999988887     578


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC-C-----------------------eEEEEEcCCCcEEEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED-G-----------------------LVLTHELTTGRVISR  215 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-----------------------~i~i~d~~~~~~~~~  215 (351)
                      |.+||+.+++....+..+... ..+.|+|+++.++..+.. +                       .|.+||+.+++.. .
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~  233 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M  233 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E
T ss_pred             EEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E
Confidence            999999999887777544311 123789998876655432 2                       4689999988765 3


Q ss_pred             eec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          216 FHL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       216 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      +.. .+...+..++|+|++++++++  ++.|.+||+.+++.+..    ..+..++|+|+|+.++++..   ...+.+|+.
T Consensus       234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~  308 (337)
T 1pby_B          234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDA  308 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB---SSEEEEEET
T ss_pred             eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC---CCcEEEEEC
Confidence            322 334578899999999999888  79999999999887655    34567999999998877644   356888888


Q ss_pred             eeCceE
Q psy519          291 IVGPVV  296 (351)
Q Consensus       291 ~~g~~~  296 (351)
                      .+++..
T Consensus       309 ~~~~~~  314 (337)
T 1pby_B          309 ETLEKK  314 (337)
T ss_dssp             TTCCEE
T ss_pred             cCCcEE
Confidence            877643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.6e-24  Score=183.48  Aligned_cols=268  Identities=9%  Similarity=0.049  Sum_probs=195.6

Q ss_pred             EECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCce-eEEeccC
Q psy519           57 EACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGAS-VRVFSDH  132 (351)
Q Consensus        57 ~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~  132 (351)
                      .|.+++..  ++.+.++.|.+||+++++.+..+..+...+ .++|+|+++++++++. ++.|++||+.+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            34554433  888899999999999999888877666667 9999999997766665 88999999999887 6777666


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCC-C--eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEE-cCCCe-EEEEEc
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYD-K--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG-GEDGL-VLTHEL  207 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~i~d~  207 (351)
                      ..+..+++|+|++++++++..   + +  .|.+||+.+++.+..+..+ .....++|+|+|++++++ ..++. +.+|++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTG---LNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCC---SSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEecC---CCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            666655999999999995544   3 2  8999999999888877543 456899999999865554 55578 999998


Q ss_pred             CCCcEEEE---eeccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCce---eee----eecceeEEecCCceeeee
Q psy519          208 TTGRVISR---FHLQEHEPVTSLVWSVTGETLVTG-SLTGTVQFYGWPSASK---IGI----GVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       208 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~---~~~----~~~~~~~~s~~~~~~~~~  276 (351)
                      .....+..   ........+..++|+|+|++++++ ..++.|.+||+.+++.   +..    .....++|+|+|+.+++.
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE
Confidence            75433211   112344568999999999966554 4689999999998887   543    344578999999987665


Q ss_pred             eccceeeEEEeeeceeCceEEEeeEE---------------EEecCCceeeccEEEecCCccccceeeee
Q psy519          277 AANSRVRTLREMHEIVGPVVVVESFI---------------VEIRPDKWYEANLIVLDDDLKECNLETYS  331 (351)
Q Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  331 (351)
                      ...  ...+.+|+..+++...+....               +.|+|++.++...-..++.+..|++....
T Consensus       239 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          239 TES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EcC--CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            542  335777888877763332211               37889998764442234578889886543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=7.4e-25  Score=207.82  Aligned_cols=273  Identities=10%  Similarity=0.022  Sum_probs=203.0

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ..+.+++||||  |++|++++. +.|++|++.+.       +..|...+..++|+|||+++....++.|++||+.+++..
T Consensus       109 ~~v~~~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          109 TGIVDYQWSPD--AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM  185 (741)
T ss_dssp             EESCCCEECTT--SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEE
T ss_pred             cCcceeEECCC--CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEE
Confidence            34788999999  999999876 89999998754       445678899999999999844444679999999998776


Q ss_pred             EEeeCCCCC----------------eEEEEEeCCCCEEEEEeCCC---------------------------------cE
Q psy519           85 RIFVGHKQD----------------VTCARFHPKITYIGTGSYDK---------------------------------AV  115 (351)
Q Consensus        85 ~~~~~~~~~----------------i~~i~~~~~~~~l~~~~~dg---------------------------------~i  115 (351)
                      .....+...                +..++|+|||++|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            555444332                47799999999999987665                                 78


Q ss_pred             EEEeCCC-CceeEEec--cCCCCeEEEEEccCCCEEEEEec--CCCCCeEEEEEccCCceeEEeccCCC----CEEEEEE
Q psy519          116 RLWSITD-GASVRVFS--DHVSPVLSIAFSPCGKYLASGGT--GSYDKAVRLWSITDGASVRVFSDHVS----PVLSIAF  186 (351)
Q Consensus       116 ~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~--~~~d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~  186 (351)
                      ++||+.+ ++......  .+...+..++| |||++|+++..  ...+..|++||+.+++....+..+..    .+..++|
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            9999988 77655443  36678999999 99999987653  22357899999999987776655443    3457899


Q ss_pred             CCCCcEEEEEcCCCeEEEEEcC-CCcEEEEeeccCCCCEEEE-EEcCCCCEEEE-EeCCC--eEEEEeCCC-Cceeee--
Q psy519          187 SPCGKYLASGGEDGLVLTHELT-TGRVISRFHLQEHEPVTSL-VWSVTGETLVT-GSLTG--TVQFYGWPS-ASKIGI--  258 (351)
Q Consensus       187 ~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~~dg--~i~i~~~~~-~~~~~~--  258 (351)
                      +|||+++++++.+|.+.+|.+. ++. ...+. .+...+..+ .|+|+++.|+. ++.++  .+++|++.. +.....  
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            9999999999999977777665 344 55443 445678777 59999997765 44455  899998864 332221  


Q ss_pred             --eecceeEEecCCceeeeeecc-ceeeEEEeeec
Q psy519          259 --GVYPRCAAQPVGFEAATLAAN-SRVRTLREMHE  290 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~  290 (351)
                        ..+..++|||+|+.+++..++ .....+.+++.
T Consensus       423 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          423 KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence              334578999999988776554 33345666654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=4e-25  Score=203.96  Aligned_cols=264  Identities=12%  Similarity=0.020  Sum_probs=198.2

Q ss_pred             ccceEEeeecCCccccEEEEecC-CCceEEEecCCc----cCCCc-cceEEEEECCCCcE-EEEeC---CCcEEEEeCCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLES-QKNLQSRYLPYY----TSGHD-MTVWSVEACSKGLA-LTGSR---DTTARLWSLEQ   80 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~-~~~i~i~~~~~~----~~~~~-~~i~~~~~~~~~~~-~~~~~---d~~i~vw~~~~   80 (351)
                      ..+|.+++|+||  |++||+++. +|+++||++..+    +..|. ..+..++|+|+ ++ ++++.   +...++|.+..
T Consensus        21 ~~~~~~~~~~~D--G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVD--GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEET--TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCC--CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            567999999999  999999877 999999998665    44454 68999999999 66 55554   45555654432


Q ss_pred             ---CeeeEEeeCCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           81 ---MYPLRIFVGHKQDVTCARFHPKITY-IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        81 ---~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                         +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+ .  .+++|+|||+++++++.   
T Consensus        98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~---  169 (582)
T 3o4h_A           98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGF---  169 (582)
T ss_dssp             TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEE---
T ss_pred             cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEE---
Confidence               2222 33222 23446688888753 334444555669999988766555433 3  78999999999998776   


Q ss_pred             C----CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC--eEEEEEcCCCcEEEEeeccCCCCEEEEE--
Q psy519          157 D----KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG--LVLTHELTTGRVISRFHLQEHEPVTSLV--  228 (351)
Q Consensus       157 d----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~--  228 (351)
                      +    +.|++||+.+++.. .+..+...+..++|+|||++|+++..++  .|++||+.+++.. .+. .+...+..++  
T Consensus       170 ~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~  246 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-LPSKDFSSYRPT  246 (582)
T ss_dssp             EETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-CSCSHHHHHCCS
T ss_pred             cCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhc
Confidence            5    78999999887754 5677888899999999999999888888  8999999988876 432 4444555566  


Q ss_pred             ------EcCCCCEEEEEeCCCeEEEEeCCCCceee--eeecceeEEecCCceeeeeeccceeeEEEeeece
Q psy519          229 ------WSVTGETLVTGSLTGTVQFYGWPSASKIG--IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       229 ------~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                            |+|||.++++++.|+.+++|++  ++...  ...+..++|+ ++..+++.+.+.....+.+++..
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                  9999998999999999999999  55442  2445678999 99988888888877777777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=7.7e-25  Score=206.62  Aligned_cols=309  Identities=12%  Similarity=0.087  Sum_probs=211.6

Q ss_pred             eEEeeecCCccccEEEEecCCCceEEEecCCccC------CCc-----------------cceEEEEECCCCcEEEEeCC
Q psy519           14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYYTS------GHD-----------------MTVWSVEACSKGLALTGSRD   70 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~------~~~-----------------~~i~~~~~~~~~~~~~~~~d   70 (351)
                      +..+.|+ .  + .+++.+.++ | +||+.++..      .+.                 ..|.+++|+|+ ..+..+.+
T Consensus        28 ~~~~~w~-g--~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~  100 (706)
T 2z3z_A           28 VVGLQWM-G--D-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ  100 (706)
T ss_dssp             CTTCEEE-T--T-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET
T ss_pred             CCCCcCc-C--C-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC
Confidence            3446777 4  4 455556677 8 999876622      122                 46999999999 55333356


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----CceeEEeccCCCC----------
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-----GASVRVFSDHVSP----------  135 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~----------  135 (351)
                      +.+++||+.+++... +..+...+.+++|+|||+.|+++ .++.|++||+.+     ++.......+...          
T Consensus       101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            999999999887654 44566778889999999999985 589999999998     7766544433332          


Q ss_pred             ----eEEEEEccCCCEEEEEec------------------------------CCCCCeEEEEEccCCceeEEec--cCCC
Q psy519          136 ----VLSIAFSPCGKYLASGGT------------------------------GSYDKAVRLWSITDGASVRVFS--DHVS  179 (351)
Q Consensus       136 ----i~~~~~~~~~~~l~~~~~------------------------------~~~d~~i~i~d~~~~~~~~~~~--~~~~  179 (351)
                          +.+++|+|||++|++++.                              ...+..|++||+.+++......  .+..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence                478999999999998862                              0015789999998887544432  4566


Q ss_pred             CEEEEEECCCCcEEEEEcCCC-----eEEEEEcCCCcEEEEeec-cCCC---CEEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy519          180 PVLSIAFSPCGKYLASGGEDG-----LVLTHELTTGRVISRFHL-QEHE---PVTSLVWSV--TGETLVTGSLTGTVQFY  248 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~  248 (351)
                      .+..++|+|||++|++++.++     .|++||+.+++....+.. ....   .+..++|+|  +|+++++++.||.+++|
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            789999999999999887665     899999998844433321 2221   246789999  99999999999999999


Q ss_pred             eCC-CCceeee-----eecce-eEEecCCceeeeeeccce--eeEEEeeeceeCceEEEe----eEEEEecCCceeeccE
Q psy519          249 GWP-SASKIGI-----GVYPR-CAAQPVGFEAATLAANSR--VRTLREMHEIVGPVVVVE----SFIVEIRPDKWYEANL  315 (351)
Q Consensus       249 ~~~-~~~~~~~-----~~~~~-~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~  315 (351)
                      .+. +++.+..     ..+.. ++|+|+|..+++.+.+..  ...+..|+..++....+.    .....|+||+.+....
T Consensus       339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEE
T ss_pred             EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEE
Confidence            876 4444332     12333 689999998887776654  235555665555433221    1236899999876443


Q ss_pred             EEec---CCccccceeeee
Q psy519          316 IVLD---DDLKECNLETYS  331 (351)
Q Consensus       316 ~~~~---~~i~~~~~~~~~  331 (351)
                      ....   ..+..|++++..
T Consensus       419 ~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          419 FQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EECSSCSCEEEEEESSSCE
T ss_pred             ecCCCCCcEEEEEECCCCe
Confidence            2222   236677765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.9e-25  Score=209.17  Aligned_cols=265  Identities=11%  Similarity=0.026  Sum_probs=191.3

Q ss_pred             ceEEeeecCCccccEEEEecCC---------CceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519           13 HFIQNSFKPETVEDVLANLESQ---------KNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~---------~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      .|.+++||||  |++|++++.+         +.+.+||+.+.       ..+|...+..++|+|||+. +.++ ++.|++
T Consensus        62 ~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~  138 (723)
T 1xfd_A           62 RAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY  138 (723)
T ss_dssp             TCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred             ccceEEECCC--CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE-CCeEEE
Confidence            4899999999  9999998764         67889999876       2234455889999999987 5554 489999


Q ss_pred             EeCCCCeeeEEeeCCCCCe------------------EEEEEeCCCCEEEEEeCCC------------------------
Q psy519           76 WSLEQMYPLRIFVGHKQDV------------------TCARFHPKITYIGTGSYDK------------------------  113 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i------------------~~i~~~~~~~~l~~~~~dg------------------------  113 (351)
                      |++.+++.......+...+                  .+++|+|||+.|++++.++                        
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence            9999988776665544433                  7899999999999887543                        


Q ss_pred             ----------cEEEEeCCCCceeEEeccC------CCCeEEEEEccCCCEEEEEec-CCCCCeEEEEEccCCceeEEecc
Q psy519          114 ----------AVRLWSITDGASVRVFSDH------VSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       114 ----------~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                                .|++||+.+++....+..+      ...+..++|+|||+++++... ...+..|++||+.+++....+..
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence                      7999999988765666543      567899999999998876643 12246899999999887665543


Q ss_pred             -CCCCE----EEEEECCCCcEEEE--EcCCC------eEEEEE-cCCCcE--EEEeeccCCCCEEE-EEEcCCCCEEEEE
Q psy519          177 -HVSPV----LSIAFSPCGKYLAS--GGEDG------LVLTHE-LTTGRV--ISRFHLQEHEPVTS-LVWSVTGETLVTG  239 (351)
Q Consensus       177 -~~~~i----~~~~~~~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~v~~-~~~~~~~~~l~~~  239 (351)
                       +...+    ..++|+|||+.|+.  +..++      .|++|| ...+..  ...+. .+...+.. ++|+|||+.|+..
T Consensus       299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~  377 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFL  377 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEE
T ss_pred             ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEE
Confidence             23333    37899999997665  44566      577777 344431  33332 23344554 6999999999776


Q ss_pred             eCC---CeEEEEeCCCCc---eee-------eeecceeEEecCCceeeeeeccce
Q psy519          240 SLT---GTVQFYGWPSAS---KIG-------IGVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       240 ~~d---g~i~i~~~~~~~---~~~-------~~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      +.+   +.+++|++....   ...       ...+..++|+|+|+.+++...+..
T Consensus       378 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          378 STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             EcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence            554   789999986432   111       123567999999998887665544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.8e-24  Score=212.20  Aligned_cols=274  Identities=8%  Similarity=0.010  Sum_probs=216.8

Q ss_pred             CccceEEeeec-CCccccEEEEecCCCceEEEecCCc----cCCCcc-ceEEEEECCCCcE-EEEeCCCcEE-EEeCCCC
Q psy519           10 DHKHFIQNSFK-PETVEDVLANLESQKNLQSRYLPYY----TSGHDM-TVWSVEACSKGLA-LTGSRDTTAR-LWSLEQM   81 (351)
Q Consensus        10 ~~~~v~~~~~s-p~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~-~i~~~~~~~~~~~-~~~~~d~~i~-vw~~~~~   81 (351)
                      |...+.+++|| |+  |++|++++ ++.+.+|+....    ...|.. .+..++|+ +|+. +.++.+..+. +|++.++
T Consensus       294 ~~~~v~~~~~S~pd--G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~  369 (1045)
T 1k32_A          294 SIPSKFAEDFSPLD--GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG  369 (1045)
T ss_dssp             ECGGGGEEEEEECG--GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccccceeeecCCC--CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence            34478999999 99  99999887 789999998766    456666 89999999 9876 7777788888 9999887


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC-------
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG-------  154 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------  154 (351)
                      +... +.+|...+..++|+|||+.|++++.++.|++||+.+++.......|...+.+++|+|||++|++++..       
T Consensus       370 ~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          370 KAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             CEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             CceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence            6544 44788899999999999999999999999999999998887777788899999999999999888751       


Q ss_pred             CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE----------------------
Q psy519          155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV----------------------  212 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------  212 (351)
                      ..++.|++||+.+++ ...+..|...+..++|+|||++|+.++.++....|+......                      
T Consensus       449 ~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  527 (1045)
T ss_dssp             CCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             CCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence            012489999998876 667778888899999999999999998877666666432211                      


Q ss_pred             ---------------------EEEeeccCCCCEEEEEEcCCCCEEEE-------------EeCCCeEEEEeCCCCceeee
Q psy519          213 ---------------------ISRFHLQEHEPVTSLVWSVTGETLVT-------------GSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       213 ---------------------~~~~~~~~~~~v~~~~~~~~~~~l~~-------------~~~dg~i~i~~~~~~~~~~~  258 (351)
                                           +..+. .+...+..++++|+++++++             ......+.+||+.+++....
T Consensus       528 ~~~~~~~~~~~~~d~~g~~~~~~~l~-~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l  606 (1045)
T 1k32_A          528 LVPRSMTSEAGEYDLNDMYKRSSPIN-VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV  606 (1045)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECS-CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE
T ss_pred             cCcCccccccccccccCHhHceEEcC-CCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe
Confidence                                 01111 13356889999999987775             12345789999988875433


Q ss_pred             -eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          259 -GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       259 -~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                       ..+..+++||||+.+++...+    .+++|+..++.
T Consensus       607 ~~~v~~~~~S~DG~~l~~~~~~----~i~~~d~~~~~  639 (1045)
T 1k32_A          607 KNNLTDLRLSADRKTVMVRKDD----GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEEEEECTTSCEEEEEETT----SCEEEEESSCT
T ss_pred             ecCcceEEECCCCCEEEEEcCC----cEEEEeCccCc
Confidence             456788999999999987665    47788877766

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.2e-23  Score=178.94  Aligned_cols=262  Identities=9%  Similarity=-0.015  Sum_probs=200.0

Q ss_pred             CccceEEEEECCCCcE-EEEeC-------CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEe
Q psy519           49 HDMTVWSVEACSKGLA-LTGSR-------DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGT-GSYDKAVRLWS  119 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~-------d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d  119 (351)
                      ....+..++|+|+++. ++++.       ++.|.+||..+++.+..+... ..+..++|+|+++.+++ ...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456789999999976 44442       568999999999888777643 44678999999996554 45579999999


Q ss_pred             CCCCceeEEeccCCC---------CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC
Q psy519          120 ITDGASVRVFSDHVS---------PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  190 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  190 (351)
                      +.+++.+..+..+..         .+.+++|+|++++++++.. ..++.|.+||+.+++.+..+..+...+..++|+|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            999998877765332         2788999999998887762 117889999999999888887566667889999999


Q ss_pred             cEEEEEcCCCeEEEEEcCCCcEEEEeecc---CCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeee---ecce
Q psy519          191 KYLASGGEDGLVLTHELTTGRVISRFHLQ---EHEPVTSLVWSVTGETLVTGSL-TGTVQFYGWPSASKIGIG---VYPR  263 (351)
Q Consensus       191 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~---~~~~  263 (351)
                      +++++++.++.+.+||+.+++....+...   +...+..++|+|+++++++++. ++.|.+||..+++.+...   ....
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  276 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA  276 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCce
Confidence            99999999999999999999888777642   2346788999999998777665 599999999998877553   3356


Q ss_pred             eEEecCCceeeeeeccceeeEEEeeeceeCceEEEee-----EEEEecCCceeecc
Q psy519          264 CAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES-----FIVEIRPDKWYEAN  314 (351)
Q Consensus       264 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~  314 (351)
                      ++|+|+|..+.+.....  ..+.+|+..+++......     ..+.|+|++.+...
T Consensus       277 ~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEE
T ss_pred             EEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEE
Confidence            89999999766655322  356777776665443221     22578888875543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.1e-24  Score=183.19  Aligned_cols=227  Identities=15%  Similarity=0.154  Sum_probs=174.4

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCC-c-----cCCC-ccceEEEEECCCCcE-EEEe--CC--CcEEEE
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY-Y-----TSGH-DMTVWSVEACSKGLA-LTGS--RD--TTARLW   76 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~-~-----~~~~-~~~i~~~~~~~~~~~-~~~~--~d--~~i~vw   76 (351)
                      .|...|.+++|+|+  +++|++++ ++.|++|++.. .     ...+ ...+.+++|+|++++ ++++  .+  ..|.++
T Consensus        39 ~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           39 QTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             EESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             cCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            36778999999999  99999986 78999999988 5     3333 467889999999987 6666  33  345555


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCC-CceeEEeccCCCCeEEEEEccCCCEEEEEe-c
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIG-TGSYDKAVRLWSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGG-T  153 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  153 (351)
                      ++.+++ ...+..+ ..+..++|+|+++.|+ ++..++.+.+|+++. +.....+..+...+.+++|+|+++++++++ .
T Consensus       116 ~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  193 (297)
T 2ojh_A          116 PSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR  193 (297)
T ss_dssp             ETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred             ECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence            555554 3344333 3488999999999877 677889899998632 334455666788999999999999888765 4


Q ss_pred             CCCCCeEEEEEcc-CCceeEEeccCCCCEEEEEECCCCcEEEEEcCC-----------CeEEEEEcCCCcEEEEeec-cC
Q psy519          154 GSYDKAVRLWSIT-DGASVRVFSDHVSPVLSIAFSPCGKYLASGGED-----------GLVLTHELTTGRVISRFHL-QE  220 (351)
Q Consensus       154 ~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-~~  220 (351)
                         ++.+++|++. .+.....+..+...+..++|+|++++|++++.+           +.|++||+.+++....... .+
T Consensus       194 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  270 (297)
T 2ojh_A          194 ---TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG  270 (297)
T ss_dssp             ---TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES
T ss_pred             ---CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC
Confidence               7889999886 556677777788889999999999999888765           5699999988765443322 34


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCC
Q psy519          221 HEPVTSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       221 ~~~v~~~~~~~~~~~l~~~~~dg  243 (351)
                      ...+..++|+|++++|++++.+.
T Consensus       271 ~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          271 QGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CcccccceECCCCCEEEEEEecc
Confidence            56789999999999998877653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=1.2e-23  Score=181.33  Aligned_cols=233  Identities=10%  Similarity=0.033  Sum_probs=182.0

Q ss_pred             EeeecCCccccEEEEecCCCceEEEecCCc-----cCCC-ccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           16 QNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGH-DMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~-~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      .++++++  +.++++++.++.|.+||..+.     ...+ ...+..++|+|+++.  ++...++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~--~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAG--HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTT--CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCC--CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            4678888  999999999999999999876     2212 125778999999974  56667899999999999887776


Q ss_pred             eCCC------CCeEEEEEeCCCCEEEEEeCC------------CcEEEEeCCCCce---eEEeccCCCCeEEEEEccCCC
Q psy519           88 VGHK------QDVTCARFHPKITYIGTGSYD------------KAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        88 ~~~~------~~i~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~  146 (351)
                      ..+.      ..+..++|+|+++++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS  160 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence            5332      237789999999999988865            8999999988543   33333 344688899999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEeccCC------------------------------------------------
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHV------------------------------------------------  178 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------------------  178 (351)
                       ++++     ++.|.+||+.+++.+..+..+.                                                
T Consensus       161 -l~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          161 -LYVA-----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             -EEEE-----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             -EEEc-----cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence             5554     3449999999888766654321                                                


Q ss_pred             --------------------CCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          179 --------------------SPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       179 --------------------~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                                          ..+..++|+| ++++++++  ++.|.+||+.+++.+..+..  ...+..++|+|++++|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEE
Confidence                                1345677889 99999888  88999999999988877753  34578999999999888


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeec
Q psy519          238 TGSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      +++.++.|.+||+.+++.+.....
T Consensus       311 ~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          311 LGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCeEEEEeccccceeeeeec
Confidence            888899999999999887766443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.9e-22  Score=174.01  Aligned_cols=262  Identities=11%  Similarity=0.097  Sum_probs=178.3

Q ss_pred             CCceEEEecCCc--------cCCCccceEEEEECCCCcEEEEeC---CCcEEEEeCCCCe--eeEEeeCCCCCeEEEEEe
Q psy519           34 QKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLALTGSR---DTTARLWSLEQMY--PLRIFVGHKQDVTCARFH  100 (351)
Q Consensus        34 ~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~---d~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~  100 (351)
                      ++.|.+|.++..        ...+...+..++|+|+|++++++.   ++.|++|++.+++  .+..+..+...+..++|+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            456777777643        223446677899999998744433   6899999997765  344444567778899999


Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCC-Cc--eeEEecc---------CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-
Q psy519          101 PKITYIGTGS-YDKAVRLWSITD-GA--SVRVFSD---------HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-  166 (351)
Q Consensus       101 ~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-  166 (351)
                      |++++|++++ .++.+.+|++.. +.  .+..+..         ....+.+++|+|+|+++++...   ++.|.+||+. 
T Consensus        95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---~~~v~~~~~~~  171 (347)
T 3hfq_A           95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---SDKVYVYNVSD  171 (347)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---TTEEEEEEECT
T ss_pred             CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---CCEEEEEEECC
Confidence            9999888887 679999999963 22  2333321         1234889999999995555444   7899999998 


Q ss_pred             CCceeE--Eecc-CCCCEEEEEECCCCcEEEE-EcCCCeEEEEEcCC--CcEE--EEeeccCC-----CCEEEEEEcCCC
Q psy519          167 DGASVR--VFSD-HVSPVLSIAFSPCGKYLAS-GGEDGLVLTHELTT--GRVI--SRFHLQEH-----EPVTSLVWSVTG  233 (351)
Q Consensus       167 ~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~--~~~~~~~~-----~~v~~~~~~~~~  233 (351)
                      +++...  .+.. ....+..++|+|||+++++ ...++.+.+|++..  ++..  ..+.....     ..+..++|+|+|
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            454322  2222 2336788999999996665 56688999999874  4432  22221111     348899999999


Q ss_pred             CEEE-EEeCCCeEEEEeCCCC---ceeeee-----ecceeEEecCCceeeeeeccceeeEEEee--eceeCceEEEee
Q psy519          234 ETLV-TGSLTGTVQFYGWPSA---SKIGIG-----VYPRCAAQPVGFEAATLAANSRVRTLREM--HEIVGPVVVVES  300 (351)
Q Consensus       234 ~~l~-~~~~dg~i~i~~~~~~---~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~  300 (351)
                      ++|+ +...++.|.+|++...   +.+...     ....++|+|+|+.++++..+..  .+.+|  +..+|+...+..
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD--NATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT--EEEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC--cEEEEEEeCCCCeEEeccc
Confidence            9874 5556899999999732   233221     3467999999998888776532  35555  556677555443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=2.2e-23  Score=178.68  Aligned_cols=237  Identities=13%  Similarity=0.067  Sum_probs=183.7

Q ss_pred             ceEEeeecCCccccEE-EEecCCCceEEEecCCc-----c-CC----CccceEEEEECCCCcE-EEEe------------
Q psy519           13 HFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----T-SG----HDMTVWSVEACSKGLA-LTGS------------   68 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~-~~----~~~~i~~~~~~~~~~~-~~~~------------   68 (351)
                      .+..++|+|+  ++++ +++..++.|.+||+.+.     . ..    |...+..++|+|+|++ +++.            
T Consensus        35 ~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           35 TPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccceEEcCC--CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence            4778999999  9765 55566789999999876     1 11    1236778999999976 5554            


Q ss_pred             CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           69 RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++.|++||+.+++....+..+... ..+.|+|++..+
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l  188 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV  188 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred             cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence            579999999999888777764 4457889999999988887  689999999999887776543311 123789999877


Q ss_pred             EEEecCCCCC-----------------------eEEEEEccCCcee-EEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          149 ASGGTGSYDK-----------------------AVRLWSITDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       149 ~~~~~~~~d~-----------------------~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      +.....  ++                       .|.+||+++++.. ..+..+...+..++|+|++++++++  ++.|.+
T Consensus       189 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~  264 (337)
T 1pby_B          189 WNQHES--SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCTT--TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred             eeeccC--CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEE
Confidence            655431  22                       4789999988764 2234556678899999999999988  789999


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      ||+.+++.+..+..  ...+.+++|+|++++|++++.++.|.+||+.+++.+.....
T Consensus       265 ~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          265 FDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            99999988877653  35678999999999999998899999999999887765443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.2e-22  Score=175.14  Aligned_cols=240  Identities=12%  Similarity=0.091  Sum_probs=168.6

Q ss_pred             cceEEeeecCCccccEEEEecC---CCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEe-CCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANLES---QKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGS-RDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~---~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~-~d~~i~vw~~~   79 (351)
                      ..+..++|+|+  |+ |++++.   ++.|.+|++...       ...+...+..++|+|+|++ ++++ .++.+.+|++.
T Consensus        40 ~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           40 QNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             SCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            45667999999  99 554443   689999999654       2335677889999999986 6665 68999999996


Q ss_pred             -CC--eeeEEeeC---------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeE--Eecc-CCCCeEEEEEcc
Q psy519           80 -QM--YPLRIFVG---------HKQDVTCARFHPKITYIGTGSYDKAVRLWSIT-DGASVR--VFSD-HVSPVLSIAFSP  143 (351)
Q Consensus        80 -~~--~~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i~~~~~~~  143 (351)
                       ++  +.+..+..         +...+.+++|+|+++++++...++.|++|++. +++...  .+.. ....+..++|+|
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP  196 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence             22  23333322         12348889999999966666678899999998 454322  1222 234678899999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccC--Cce--eEEeccCC------CCEEEEEECCCCcEEE-EEcCCCeEEEEEcCCC--
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITD--GAS--VRVFSDHV------SPVLSIAFSPCGKYLA-SGGEDGLVLTHELTTG--  210 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~~------~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~--  210 (351)
                      +|+++++++..  ++.+.+|++..  ++.  +..+....      ..+..++|+|||++|+ +...++.|.+|++...  
T Consensus       197 dg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          197 DGQYAFLAGEL--SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             TSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCEEEEEeCC--CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            99977765432  78999999874  432  22232222      3488899999999875 4556899999999732  


Q ss_pred             -cEEEEeeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCceee
Q psy519          211 -RVISRFHLQEHEPVTSLVWSVTGETLVTGSL-TGTVQFY--GWPSASKIG  257 (351)
Q Consensus       211 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~--~~~~~~~~~  257 (351)
                       +.+..+. .+...+..++|+|+|++|++++. ++.|.+|  |..+++...
T Consensus       275 ~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          275 LTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence             3333333 22346789999999999888776 4899999  555666553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=6.9e-24  Score=188.00  Aligned_cols=234  Identities=13%  Similarity=0.109  Sum_probs=174.0

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc--------------------cCCCccceEEEEECCCCcE-E----
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------------TSGHDMTVWSVEACSKGLA-L----   65 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------------~~~~~~~i~~~~~~~~~~~-~----   65 (351)
                      ...+..++++|+  +.++++++.++ +++|+....                    ...+...|.+++|+|+|++ +    
T Consensus        36 ~~~~n~lavs~~--~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           36 KERSSLLAVSNK--YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CSCCBCEEEETT--TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCCccEEEEecC--CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence            346788999999  99999998887 888765321                    1124457999999999987 5    


Q ss_pred             EEeCCCcEEEEeCCCC--------e---eeEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEeccCC
Q psy519           66 TGSRDTTARLWSLEQM--------Y---PLRIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSITDGASVRVFSDHV  133 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~--------~---~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  133 (351)
                      +++.|+.|++||+.++        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++.......+|.
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence            6788999999998654        2   24556679999999999997 7899999999999999999987776666788


Q ss_pred             CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccC-------CCCEEEEEECCCCcEEEEEc-CCC-----
Q psy519          134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH-------VSPVLSIAFSPCGKYLASGG-EDG-----  200 (351)
Q Consensus       134 ~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~dg-----  200 (351)
                      ..|.+++|+|+|++|++|+.   |+.|++||++ ++....+..+       ...+.+++|++++.++++.+ .+|     
T Consensus       193 ~~v~~v~wspdg~~lasgs~---dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQ---NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEET---TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CceeEEEEcCCCCEEEEEcC---CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            99999999999999999998   9999999998 5555555433       23789999999888776533 343     


Q ss_pred             -eEEEEEcCCCc-----EEEEeec------cCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC
Q psy519          201 -LVLTHELTTGR-----VISRFHL------QEHEPVTSLVWSVTGETLVTGSL-TGTVQFYGWP  251 (351)
Q Consensus       201 -~i~i~d~~~~~-----~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~  251 (351)
                       .+++|+++...     ....+..      ....+-..+.+-++.+++++++. .+.|.+....
T Consensus       269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          269 PDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence             38999998642     1111110      01112223444467777766554 5667777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=3.8e-24  Score=202.27  Aligned_cols=257  Identities=9%  Similarity=0.001  Sum_probs=180.1

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCcc---ceEEEEECCCCcE-EEEeC---------CCcEEEE
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDM---TVWSVEACSKGLA-LTGSR---------DTTARLW   76 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~---~i~~~~~~~~~~~-~~~~~---------d~~i~vw   76 (351)
                      ..++|+|+  |++++++ .++.|++|++.++     ...|..   .+.+++|+|||++ ++++.         ++.|++|
T Consensus        19 ~~~~~s~d--g~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISG--QEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSS--SEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCC--CeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            37899999  9766654 6899999999887     223333   3889999999987 66654         6899999


Q ss_pred             eCCCCeee--EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCCe-----------------
Q psy519           77 SLEQMYPL--RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSPV-----------------  136 (351)
Q Consensus        77 ~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i-----------------  136 (351)
                      |+.+++.+  ..+   ...+..++|+|||+.|+++. ++.|++||+.+++..... .++...+                 
T Consensus        96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            99998763  222   24688899999999999886 789999999888765433 2222222                 


Q ss_pred             EEEEEccCCCEEEEEecCC-------------------------------CCCeEEEEEccCCcee---E-----EeccC
Q psy519          137 LSIAFSPCGKYLASGGTGS-------------------------------YDKAVRLWSITDGASV---R-----VFSDH  177 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~-------------------------------~d~~i~i~d~~~~~~~---~-----~~~~~  177 (351)
                      .+++|+|||++|++++...                               ....|++||+.+++..   .     .+..|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            4799999999999887510                               0117899999887642   1     12357


Q ss_pred             CCCEEEEEECCCCcEEEEEcCC----CeEEEEE----cCCCcEEEEee---ccCCCCEE-----EEEEcCCCCEEEE--E
Q psy519          178 VSPVLSIAFSPCGKYLASGGED----GLVLTHE----LTTGRVISRFH---LQEHEPVT-----SLVWSVTGETLVT--G  239 (351)
Q Consensus       178 ~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~~l~~--~  239 (351)
                      ...+..++|+||++++++....    ..|.+||    +.+++....+.   ..+...+.     .+.|+|||+.|+.  .
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  331 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS  331 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence            7789999999998877764432    2488899    77765443331   23344455     7899999996554  4


Q ss_pred             eCCC--eEEEEeCCCCceeee----eecceeEEecCCceeeeeecc
Q psy519          240 SLTG--TVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       240 ~~dg--~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~  279 (351)
                      ..+|  .|.+|++.+++....    ..+..+.++ ++..++..+..
T Consensus       332 ~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          332 DKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             CTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             ccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEec
Confidence            3455  677788877664332    123345666 88877777765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=4.7e-21  Score=166.17  Aligned_cols=266  Identities=12%  Similarity=0.100  Sum_probs=179.1

Q ss_pred             ccEEEEec----CCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC----CcEEEEeCCC--Ce--ee
Q psy519           25 EDVLANLE----SQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD----TTARLWSLEQ--MY--PL   84 (351)
Q Consensus        25 ~~~l~~~~----~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d----~~i~vw~~~~--~~--~~   84 (351)
                      ..+++.|+    .++.|.+|.++..       ...+...+..++|+|+|++ ++++.+    +.+.+|++..  ++  .+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            45666663    3568999987542       1115667778999999986 666664    7999998865  43  33


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEe------cc--------CCCCeEEEEEccCCCEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVRVF------SD--------HVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~i~~~~~~~~~~~l~  149 (351)
                      .....+......+++  +++++++++ .++.+.+|++.....+..+      .+        +...+.+++|+|+|++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            334445566777888  788777766 5789999999754332211      11        123458899999999777


Q ss_pred             EEecCCCCCeEEEEEccCCce------e-------EEeccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEE--
Q psy519          150 SGGTGSYDKAVRLWSITDGAS------V-------RVFSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVI--  213 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--  213 (351)
                      ++..+  ++.|.+|++.....      +       .........+..++|+|||+++++++ .++.|.+||+.+++..  
T Consensus       171 ~~~~~--~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          171 ADDLG--TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEETT--TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEeCC--CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            66542  78999999875431      1       11223455678999999999887776 6899999999877542  


Q ss_pred             EEeec--cCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCC--CCce--eeee----ecceeEEecCCceeeeeecc-c
Q psy519          214 SRFHL--QEHEPVTSLVWSVTGETLVTGSLT--GTVQFYGWP--SASK--IGIG----VYPRCAAQPVGFEAATLAAN-S  280 (351)
Q Consensus       214 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~--~~~~--~~~~----~~~~~~~s~~~~~~~~~~~~-~  280 (351)
                      ..+..  .+...+..++|+|||++|+++..+  +.|.+|++.  +++.  +...    ....++|+|+|++++++..+ +
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence            22221  122457899999999998776654  899999996  4443  2221    45679999999988887744 3


Q ss_pred             eeeEEEeeeceeCce
Q psy519          281 RVRTLREMHEIVGPV  295 (351)
Q Consensus       281 ~~~~~~~~~~~~g~~  295 (351)
                      .+..+ .++..+|..
T Consensus       329 ~v~v~-~~d~~~g~~  342 (361)
T 3scy_A          329 VIQIF-ERDQATGLL  342 (361)
T ss_dssp             EEEEE-EECTTTCCE
T ss_pred             CEEEE-EEECCCCcE
Confidence            33222 245556663

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.8e-21  Score=168.82  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=167.2

Q ss_pred             CccceEEeeecCCccccEEEEecCC----CceEEEecCCc---------cCCCccceEEEEECCCCcE-EE-EeCCCcEE
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQ----KNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LT-GSRDTTAR   74 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~----~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~-~~~d~~i~   74 (351)
                      +...+..++|+|+  |++|++++.+    +.|.+|++...         ...+......+++  ++++ ++ ...++.+.
T Consensus        48 ~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence            3455667899999  9999888775    79999988652         2224456677787  6654 44 44688999


Q ss_pred             EEeCCCCeeeEEe------eC--------CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCce------e-------
Q psy519           75 LWSLEQMYPLRIF------VG--------HKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGAS------V-------  126 (351)
Q Consensus        75 vw~~~~~~~~~~~------~~--------~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~-------  126 (351)
                      +|++.....+..+      .+        +...+.+++|+|+++++++++ .++.+.+|++.....      +       
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            9999754322111      11        123457899999999776655 478999998875431      1       


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce--eEEec---cCCCCEEEEEECCCCcEEEEEcCC--
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS--VRVFS---DHVSPVLSIAFSPCGKYLASGGED--  199 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--  199 (351)
                      ............++|+|+|++++++...  ++.|.+||+.+++.  +..+.   .+......++|+|||++|+++..+  
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            1122345667899999999988877631  88999999987743  22222   233457899999999998776654  


Q ss_pred             CeEEEEEcC--CCc--EEEEeeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEe--CCCCceee
Q psy519          200 GLVLTHELT--TGR--VISRFHLQEHEPVTSLVWSVTGETLVTGS-LTGTVQFYG--WPSASKIG  257 (351)
Q Consensus       200 g~i~i~d~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~--~~~~~~~~  257 (351)
                      +.|.+|++.  +++  .+..+.  ....+..++|+|+|++|++++ .++.|.+|+  ..+++...
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQL--TGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEE--CSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEec--CCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            899999985  444  333333  245678999999999988887 578999964  45665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=5.2e-22  Score=173.78  Aligned_cols=260  Identities=10%  Similarity=-0.005  Sum_probs=182.1

Q ss_pred             eeecCCccccEEEEecC-CCc--eEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           17 NSFKPETVEDVLANLES-QKN--LQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~-~~~--i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      .+||||  |++|++++. ++.  |.+|++...     ..++...+..+.|+|+|+. +.++.++.+++||+.+++....+
T Consensus        41 ~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           41 KCFTRD--GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY  118 (388)
T ss_dssp             CCBCTT--SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCC--CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence            889999  999998877 664  777788766     3445555556789999987 78888899999999999877766


Q ss_pred             eCCCCCeEEEE--EeCCCCEEEEE----------------------eCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           88 VGHKQDVTCAR--FHPKITYIGTG----------------------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        88 ~~~~~~i~~i~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                      ..+...+....  ++|++++++..                      ..+..|++||+.+++..... .+...+..++|+|
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp  197 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRP  197 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEET
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECC
Confidence            66665554444  48999988742                      23478999999988754444 4567789999999


Q ss_pred             -CCCEEEEEecCCC---CCeEEEEEccCCceeEEeccCC--CCEEEEEECCCCcEEEEEcC-CC----eEEEEEcCCCcE
Q psy519          144 -CGKYLASGGTGSY---DKAVRLWSITDGASVRVFSDHV--SPVLSIAFSPCGKYLASGGE-DG----LVLTHELTTGRV  212 (351)
Q Consensus       144 -~~~~l~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~  212 (351)
                       +|+.|+.......   ...|.++|+..++ ...+..+.  ..+..+.|+|||+.|+..+. ++    .|++||+.+++.
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence             9999988765211   2378888876554 34444443  24778899999997765443 22    399999998875


Q ss_pred             EEEeeccCCC----CEEEEEEcCCCCEEEEE---------eCCCeEEEEeCCCCceeeee---------------eccee
Q psy519          213 ISRFHLQEHE----PVTSLVWSVTGETLVTG---------SLTGTVQFYGWPSASKIGIG---------------VYPRC  264 (351)
Q Consensus       213 ~~~~~~~~~~----~v~~~~~~~~~~~l~~~---------~~dg~i~i~~~~~~~~~~~~---------------~~~~~  264 (351)
                      ..........    ....+.|+|||+.|+..         ..+..|++||+.+++.....               ....+
T Consensus       277 ~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  356 (388)
T 3pe7_A          277 RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHP  356 (388)
T ss_dssp             EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCC
T ss_pred             EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCc
Confidence            4332222100    01223799999988754         45679999999988764431               25677


Q ss_pred             EEecCCceeeeeeccc
Q psy519          265 AAQPVGFEAATLAANS  280 (351)
Q Consensus       265 ~~s~~~~~~~~~~~~~  280 (351)
                      +|+|||+.++..+...
T Consensus       357 ~~spDg~~l~~~s~~~  372 (388)
T 3pe7_A          357 SFTPDDKQILFTSDVH  372 (388)
T ss_dssp             EECTTSSEEEEEECTT
T ss_pred             cCCCCCCEEEEEecCC
Confidence            9999999888776543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.5e-23  Score=185.79  Aligned_cols=212  Identities=15%  Similarity=0.162  Sum_probs=163.0

Q ss_pred             CceEEEecCCccCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC----------eeeE-----EeeCCCCCeEEEE
Q psy519           35 KNLQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM----------YPLR-----IFVGHKQDVTCAR   98 (351)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~----------~~~~-----~~~~~~~~i~~i~   98 (351)
                      +.+++|+....  .....++.+++++++.+ ++++.++ +++|+....          ..+.     ....+...|.+++
T Consensus        23 ~~vri~~~~~~--~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~   99 (434)
T 2oit_A           23 KKVRIFDSPEE--LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLA   99 (434)
T ss_dssp             CEEECSCCCSS--CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEE
T ss_pred             eeEEecCCccc--cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEE
Confidence            46888765432  23446788999998877 7777777 899875311          0111     1123566799999


Q ss_pred             EeCCCCEEE----EEeCCCcEEEEeCCCC--------ce---eEEeccCCCCeEEEEEccC-CCEEEEEecCCCCCeEEE
Q psy519           99 FHPKITYIG----TGSYDKAVRLWSITDG--------AS---VRVFSDHVSPVLSIAFSPC-GKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        99 ~~~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i  162 (351)
                      |+|++++|+    +++.|+.|++||++++        +.   ...+.+|...|.+++|+|+ +++|++++.   |+.|++
T Consensus       100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~---Dg~v~i  176 (434)
T 2oit_A          100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA---DGSIAV  176 (434)
T ss_dssp             ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET---TSCEEE
T ss_pred             EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC---CCeEEE
Confidence            999999999    7888999999998754        22   3455678999999999997 889999998   999999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC------CCCEEEEEEcCCCCEE
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE------HEPVTSLVWSVTGETL  236 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l  236 (351)
                      ||++++........|...+.+++|+|+|++|++|+.||.|++||++ ++....+....      ...+.+++|++++.++
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            9999987766666788899999999999999999999999999998 55555443221      1278999999988877


Q ss_pred             EE-EeCCC------eEEEEeCCCC
Q psy519          237 VT-GSLTG------TVQFYGWPSA  253 (351)
Q Consensus       237 ~~-~~~dg------~i~i~~~~~~  253 (351)
                      ++ .+.||      .+++|+++..
T Consensus       256 ~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          256 IVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEccCCCccCCCCceEEEEeccC
Confidence            55 33443      3899999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=4.1e-23  Score=195.24  Aligned_cols=278  Identities=9%  Similarity=-0.016  Sum_probs=194.7

Q ss_pred             eEEeeecCCccccEEEEecC---------CCceEEEecCCc-c---CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519           14 FIQNSFKPETVEDVLANLES---------QKNLQSRYLPYY-T---SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~---------~~~i~i~~~~~~-~---~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      +.+++||||  |++|++++.         ++.|++|++.++ .   ......+..++|+|||+.++...++.|++|++.+
T Consensus        62 ~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~  139 (719)
T 1z68_A           62 ASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPG  139 (719)
T ss_dssp             CSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTT
T ss_pred             eeeEEECCC--CCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCC
Confidence            889999999  999998876         689999999876 2   3344678899999999884444688999999998


Q ss_pred             CeeeEEe-eCCCCCe-----------------EEEEEeCCCCEEEEEeCCC-----------------------------
Q psy519           81 MYPLRIF-VGHKQDV-----------------TCARFHPKITYIGTGSYDK-----------------------------  113 (351)
Q Consensus        81 ~~~~~~~-~~~~~~i-----------------~~i~~~~~~~~l~~~~~dg-----------------------------  113 (351)
                      ++..... .++...+                 .+++|+|||+.|++++.|.                             
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            8765433 2222222                 4899999999999887552                             


Q ss_pred             -----cEEEEeCCCCcee---E-----EeccCCCCeEEEEEccCCCEEEEEec-CCCCCeEEEEE----ccCCceeEEe-
Q psy519          114 -----AVRLWSITDGASV---R-----VFSDHVSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWS----ITDGASVRVF-  174 (351)
Q Consensus       114 -----~i~i~d~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d----~~~~~~~~~~-  174 (351)
                           .|++||+.+++..   .     .+.++...+..++|+||++++++... ......|.+||    +.+++....+ 
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~  299 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE  299 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence                 7889999887653   1     23357778999999999877666432 11123588999    7776554433 


Q ss_pred             ---ccCCCCEE-----EEEECCCCcEEEE--EcCCC--eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy519          175 ---SDHVSPVL-----SIAFSPCGKYLAS--GGEDG--LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       175 ---~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                         ..|...+.     .+.|+|||+.++.  ...+|  .|.+||+.+++ ...+. .+...+..+.++ +++.|+..+.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEec
Confidence               35555555     7899999986554  44455  57778887766 33343 344567777777 88877766654


Q ss_pred             -----CeEEEEeCCC--Cc--eeee--------eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          243 -----GTVQFYGWPS--AS--KIGI--------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       243 -----g~i~i~~~~~--~~--~~~~--------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                           +..++|.+..  +.  ....        ..+....|+|++..++...++...-.+.+|+..+|+..
T Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~  447 (719)
T 1z68_A          377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI  447 (719)
T ss_dssp             GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred             CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence                 7888888754  32  1111        23456889999998887665554446778887777643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.1e-21  Score=169.01  Aligned_cols=229  Identities=13%  Similarity=0.027  Sum_probs=173.3

Q ss_pred             EEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEecc
Q psy519           55 SVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHK-QDVTCARFHPKITYIG-TGSYDKAVRLWSITDGASVRVFSD  131 (351)
Q Consensus        55 ~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  131 (351)
                      .+++++++.+ ++++.++.|++||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            3567788877 899999999999999999888776543 2577899999998665 455689999999999988776653


Q ss_pred             CC------CCeEEEEEccCCCEEEEEecCCCC------------CeEEEEEccCCc---eeEEeccCCCCEEEEEECCCC
Q psy519          132 HV------SPVLSIAFSPCGKYLASGGTGSYD------------KAVRLWSITDGA---SVRVFSDHVSPVLSIAFSPCG  190 (351)
Q Consensus       132 ~~------~~i~~~~~~~~~~~l~~~~~~~~d------------~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~  190 (351)
                      ..      ..+.+++|+|+|++++++..   +            +.|.+||+.+++   .+..+.. ...+.+++|+|+|
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg  159 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVN---PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDG  159 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEE---EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTS
T ss_pred             ccccccccccccceEECCCCCEEEEEcc---cccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCC
Confidence            22      23678999999999999885   5            899999998843   3334433 3357889999999


Q ss_pred             cEEEEEcCCCeEEEEEcCCCcEEEEeeccC--------------------------------------------------
Q psy519          191 KYLASGGEDGLVLTHELTTGRVISRFHLQE--------------------------------------------------  220 (351)
Q Consensus       191 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------------------------  220 (351)
                      + +++++.  .|.+||+.+++....+....                                                  
T Consensus       160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 666544  49999999888776654321                                                  


Q ss_pred             -----------------CCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeee----ecceeEEecCCceeeeeec
Q psy519          221 -----------------HEPVTSLVWSV-TGETLVTGSLTGTVQFYGWPSASKIGIG----VYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       221 -----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~  278 (351)
                                       ...+..++|+| ++++++++  ++.|.+||+.+++.+...    ....++|+|++..+++...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  314 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  314 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC
Confidence                             01345677889 99988888  789999999988776542    3567899999988877533


Q ss_pred             cceeeEEEeeeceeCce
Q psy519          279 NSRVRTLREMHEIVGPV  295 (351)
Q Consensus       279 ~~~~~~~~~~~~~~g~~  295 (351)
                      +   ..+.+|+..+++.
T Consensus       315 ~---~~v~v~d~~~~~~  328 (349)
T 1jmx_B          315 F---NDLAVFNPDTLEK  328 (349)
T ss_dssp             S---SEEEEEETTTTEE
T ss_pred             C---CeEEEEeccccce
Confidence            3   5778888777763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=1.1e-21  Score=171.66  Aligned_cols=258  Identities=12%  Similarity=-0.012  Sum_probs=179.7

Q ss_pred             EEECCCCcE-EEEeC-CC--cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc
Q psy519           56 VEACSKGLA-LTGSR-DT--TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD  131 (351)
Q Consensus        56 ~~~~~~~~~-~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  131 (351)
                      .+|+|||+. +.++. ++  .|.+||+.+++......++...+..+.|+||++.|+.++.++.+++||+.+++.......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            789999986 66665 66  488899999988776666666665678999999999999999999999999887766665


Q ss_pred             CCCCeEEEE--EccCCCEEEEEec-------------------CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECC-C
Q psy519          132 HVSPVLSIA--FSPCGKYLASGGT-------------------GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-C  189 (351)
Q Consensus       132 ~~~~i~~~~--~~~~~~~l~~~~~-------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~  189 (351)
                      +...+....  ++|++.+++....                   ...+..|.+||+.+++... +..+...+..+.|+| |
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCC
Confidence            555454443  4899998875321                   1125789999999886544 445566789999999 9


Q ss_pred             CcEEEEEcCC------CeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCceee
Q psy519          190 GKYLASGGED------GLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSL-TG----TVQFYGWPSASKIG  257 (351)
Q Consensus       190 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg----~i~i~~~~~~~~~~  257 (351)
                      |+.|+....+      ..|.++|+..++. ..+..... ..+..+.|+|||+.|+..+. ++    .|++||+.+++...
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~  278 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ  278 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence            9988877653      3788888765543 33322221 35778999999997765443 22    39999999987544


Q ss_pred             eee----------cceeEEecCCceeeeeecc------ceeeEEEeeeceeCceEEEeeEE----------------EEe
Q psy519          258 IGV----------YPRCAAQPVGFEAATLAAN------SRVRTLREMHEIVGPVVVVESFI----------------VEI  305 (351)
Q Consensus       258 ~~~----------~~~~~~s~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~----------------~~~  305 (351)
                      ...          .....|+|+|+.+++...+      .....+.+|+..+++...+....                ..|
T Consensus       279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  358 (388)
T 3pe7_A          279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF  358 (388)
T ss_dssp             EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred             EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccC
Confidence            322          2335799999998876543      34557888888777655444322                378


Q ss_pred             cCCceeeccE
Q psy519          306 RPDKWYEANL  315 (351)
Q Consensus       306 ~~~~~~~~~~  315 (351)
                      +||+.++...
T Consensus       359 spDg~~l~~~  368 (388)
T 3pe7_A          359 TPDDKQILFT  368 (388)
T ss_dssp             CTTSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence            8998765433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=2e-21  Score=183.97  Aligned_cols=262  Identities=7%  Similarity=0.011  Sum_probs=181.4

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCcc-----ceEEEEECCCCcE-EEEeCC---------
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDM-----TVWSVEACSKGLA-LTGSRD---------   70 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~-----~i~~~~~~~~~~~-~~~~~d---------   70 (351)
                      ......++|+|+  |++++++  ++.|++|++.++     +.+|..     ....+.|+|||+. +.++.+         
T Consensus        16 ~~~~~~~~w~~d--g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISD--HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSS--SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCC--CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            345678999999  9999886  899999999877     334432     2345889999987 555554         


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-ccCCCCe-------------
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-SDHVSPV-------------  136 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i-------------  136 (351)
                      +.+.+||+++++.. .+..+...+...+|||||+.|+.+. ++.|++||+.+++..+.. .++...+             
T Consensus        92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            66789999998755 4566778899999999999999885 789999999887755432 2222222             


Q ss_pred             ----EEEEEccCCCEEEEEecCC---------------------------------CCCeEEEEEccC---Cc--eeEEe
Q psy519          137 ----LSIAFSPCGKYLASGGTGS---------------------------------YDKAVRLWSITD---GA--SVRVF  174 (351)
Q Consensus       137 ----~~~~~~~~~~~l~~~~~~~---------------------------------~d~~i~i~d~~~---~~--~~~~~  174 (351)
                          ..+.|||||+.|+.+....                                 ....|++||+.+   ++  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                3589999999999875310                                 011588899988   73  23334


Q ss_pred             c------cCCCCEEEEEECCCCcEEEEEcC----CCeEEEEEcCCCc----EE---EEeeccCCCCE-----EEEEEcCC
Q psy519          175 S------DHVSPVLSIAFSPCGKYLASGGE----DGLVLTHELTTGR----VI---SRFHLQEHEPV-----TSLVWSVT  232 (351)
Q Consensus       175 ~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~---~~~~~~~~~~v-----~~~~~~~~  232 (351)
                      .      .+...+..++|+|||+.++....    +..|.+||+.+++    +.   ..+...+...+     ..+.|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            3      26777899999999997665432    3479999998887    21   11112233333     37899999


Q ss_pred             CCEEE-EEeC-C--CeEEEEeCCCCceeeee----ecceeEEecCCceeeeeecc
Q psy519          233 GETLV-TGSL-T--GTVQFYGWPSASKIGIG----VYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       233 ~~~l~-~~~~-d--g~i~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~  279 (351)
                      |+.|+ ..+. +  ..|++|+..+++.....    .+.. .+.+++..++..+..
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~-~~~~d~~~i~f~~~~  383 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG-IEALTSDYLYYISNE  383 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE-EEEECSSEEEEEESC
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE-EEEEeCCEEEEEEec
Confidence            99877 6654 3  46888898877655432    1112 234667776666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=4.8e-21  Score=166.40  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=169.3

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecC-Cc----cCCCc--cceEEEEECCCCc--E-EEEe-------------
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLP-YY----TSGHD--MTVWSVEACSKGL--A-LTGS-------------   68 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~-~~----~~~~~--~~i~~~~~~~~~~--~-~~~~-------------   68 (351)
                      ..+..++|+|+  |++|++++.+ .|.+|++. .+    ...+.  +.+..++|+|+|+  + +++.             
T Consensus        40 ~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           40 EPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            46778999999  9999888777 89999986 43    11111  2345688999998  3 3442             


Q ss_pred             CCCcEEEEeCC-CCeeeEEee----CCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCC-CCcee--EEec--cCCCCeE
Q psy519           69 RDTTARLWSLE-QMYPLRIFV----GHKQDVTCARFHPKITYIGTGSY-DKAVRLWSIT-DGASV--RVFS--DHVSPVL  137 (351)
Q Consensus        69 ~d~~i~vw~~~-~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~  137 (351)
                      .++.+.+|++. +++....+.    .+...+.+++|+|+|++++++.. ++.|++||+. +++..  ..+.  .+...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68999999997 465443333    24567899999999998887654 6799999998 66643  2232  2356789


Q ss_pred             EEEEccCCCEEEEEecCCCCCeEEEEEcc--CCcee---EEecc-------CCC------CEEEEE-ECCCCcEEEEEcC
Q psy519          138 SIAFSPCGKYLASGGTGSYDKAVRLWSIT--DGASV---RVFSD-------HVS------PVLSIA-FSPCGKYLASGGE  198 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~~d~~i~i~d~~--~~~~~---~~~~~-------~~~------~i~~~~-~~~~~~~l~~~~~  198 (351)
                      .++|+|+|++++++...  ++.|.+|++.  +++..   ..+..       +..      .+..++ |+|||++|++++.
T Consensus       197 ~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             EeEECCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            99999999999887642  6899999875  45432   12211       121      478999 9999999887764


Q ss_pred             CC------eEEEEEcC-CCcEEEEee-c-cCCCCEEEEEEcC---CCCEEEEEeCC-CeEEEEeCCCC
Q psy519          199 DG------LVLTHELT-TGRVISRFH-L-QEHEPVTSLVWSV---TGETLVTGSLT-GTVQFYGWPSA  253 (351)
Q Consensus       199 dg------~i~i~d~~-~~~~~~~~~-~-~~~~~v~~~~~~~---~~~~l~~~~~d-g~i~i~~~~~~  253 (351)
                      +.      .|.+|++. +++...... . .....+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32      89999996 565443211 1 2334567899999   89999998864 89999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.6e-20  Score=161.79  Aligned_cols=238  Identities=10%  Similarity=0.024  Sum_probs=165.6

Q ss_pred             cceEEEEECCCCcE-EEEeCCCcEEEEeCC-CCeeeEEeeCC-CCCeEEEEEeCCCCE--EEEEe-------------CC
Q psy519           51 MTVWSVEACSKGLA-LTGSRDTTARLWSLE-QMYPLRIFVGH-KQDVTCARFHPKITY--IGTGS-------------YD  112 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~i~~i~~~~~~~~--l~~~~-------------~d  112 (351)
                      ..+..++|+|+|++ ++++.+ .|.+|++. +++........ ......++|+|++++  +++++             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            46778999999986 677776 99999997 77654433211 123456889999994  44553             68


Q ss_pred             CcEEEEeCC-CCceeEEec----cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-CCcee--EEec--cCCCCEE
Q psy519          113 KAVRLWSIT-DGASVRVFS----DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-DGASV--RVFS--DHVSPVL  182 (351)
Q Consensus       113 g~i~i~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-~~~~~--~~~~--~~~~~i~  182 (351)
                      +.+.+|++. .++....+.    .+...+.+++|+|+|++++++..+  ++.|++||+. +++..  ..+.  .+...+.
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT--ANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC--CCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            999999997 455543333    245678999999999998877542  6799999998 66543  2333  2356789


Q ss_pred             EEEECCCCcEEEEEcC-CCeEEEEEcC--CCcEEE---Eee-ccCC----C-------CEEEEE-EcCCCCEEEEEeCC-
Q psy519          183 SIAFSPCGKYLASGGE-DGLVLTHELT--TGRVIS---RFH-LQEH----E-------PVTSLV-WSVTGETLVTGSLT-  242 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~~-~~~~----~-------~v~~~~-~~~~~~~l~~~~~d-  242 (351)
                      .++|+|||+++++++. ++.+.+|++.  +++...   .+. ....    .       .+..++ |+|||++|++++.+ 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999999887765 6899999765  455421   222 1111    1       488999 99999998876543 


Q ss_pred             C-----eEEEEeCC-CCceee----e----eecceeEEec---CCceeeeeeccceeeEEEeeeceeC
Q psy519          243 G-----TVQFYGWP-SASKIG----I----GVYPRCAAQP---VGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       243 g-----~i~i~~~~-~~~~~~----~----~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +     .|.+|++. +++...    .    .....++|+|   +|++++++..++  ..+++|+....
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~--~~v~v~~~~~~  342 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE--GWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS--CEEEEEEEETT
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC--CeEEEEEEchh
Confidence            2     89999996 565442    1    1246789999   899988776542  34566654433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=4.5e-19  Score=148.56  Aligned_cols=237  Identities=11%  Similarity=0.119  Sum_probs=181.9

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----c------CCCccceEEEEE-CCCCcEEEEe-C-CCcEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----T------SGHDMTVWSVEA-CSKGLALTGS-R-DTTAR   74 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~------~~~~~~i~~~~~-~~~~~~~~~~-~-d~~i~   74 (351)
                      .++-..+.+++++|+  +.++++...++.|.+|+....    .      .++...+..+++ .+++.++.+. . ++.|.
T Consensus        26 ~g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCC--CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            345677899999999  998888888899999998754    1      234467899999 5788884444 3 89999


Q ss_pred             EEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEE
Q psy519           75 LWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        75 vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      +|+ .+++.+..+. .+...+.+++++|+++++++...++.|.+||.. ++.+..+.  .+...+.+++++|+|+++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 5666666664 334578999999999988887778999999964 55555553  344568999999999877776


Q ss_pred             ecCCCCCeEEEEEccCCceeEEeccC--CCCEEEEEECCCCcEEEEEcCCC-eEEEEEcCCCcEEEEeeccCC-CCEEEE
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFSDH--VSPVLSIAFSPCGKYLASGGEDG-LVLTHELTTGRVISRFHLQEH-EPVTSL  227 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~-~~v~~~  227 (351)
                      ..   ++.|++||. +++.+..+...  ...+..++++|+|+++++...++ .|.+||. +++.+..+..... ..+.++
T Consensus       182 ~~---~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          182 NR---AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             GG---GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred             CC---CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence            66   889999997 55666666433  35788999999999888888776 9999995 5666666654322 357899


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      +++|+|+++++ +.|+.|++|++....
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEccccc
Confidence            99999987766 579999999986543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=1.3e-21  Score=171.55  Aligned_cols=259  Identities=12%  Similarity=0.021  Sum_probs=178.8

Q ss_pred             eEEeeecCCccccEEEEecCC---CceEEEecCCc----cCCCccc-eEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           14 FIQNSFKPETVEDVLANLESQ---KNLQSRYLPYY----TSGHDMT-VWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~---~~i~i~~~~~~----~~~~~~~-i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      +..++|||+  |++|+.....   ..|.+|++...    +..+... ...+.|+|+|+. +.++.++.|++|++.+++..
T Consensus        38 ~~~~~~Spd--G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           38 FYQKCFTQD--GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTSCCBCTT--SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eecCcCCCC--CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            677899999  9998876543   36778888766    2222223 333789999987 78888889999999988766


Q ss_pred             EEeeCCCCCeEE-------------------EEEeCCCCEEEEE-----eCCCcEEEEeCCCCceeEEeccCCCCeEEEE
Q psy519           85 RIFVGHKQDVTC-------------------ARFHPKITYIGTG-----SYDKAVRLWSITDGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        85 ~~~~~~~~~i~~-------------------i~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  140 (351)
                      .....+......                   +.|+|+++.++..     ..+..|++||+.+++..... .+...+..+.
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~  194 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI  194 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence            555544432222                   3456777666543     35678999999988765544 4567789999


Q ss_pred             Ecc-CCCEEEEEecCCCC---CeEEEEEccCCceeEEeccC--CCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCC
Q psy519          141 FSP-CGKYLASGGTGSYD---KAVRLWSITDGASVRVFSDH--VSPVLSIAFSPCGKYLASGGED-----GLVLTHELTT  209 (351)
Q Consensus       141 ~~~-~~~~l~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  209 (351)
                      |+| +++.|+.......+   ..|.+||+..++. ..+..+  ...+..+.|+|||++|+..+.+     +.|++||+.+
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            999 78877776541111   4799999876543 333333  2247789999999987766543     4499999988


Q ss_pred             CcEEEEeeccCCCCEEEEEEcC-CCCEEEEEe----------------CCCeEEEEeCCCCceeeeee------------
Q psy519          210 GRVISRFHLQEHEPVTSLVWSV-TGETLVTGS----------------LTGTVQFYGWPSASKIGIGV------------  260 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~i~~~~~~~~~~~~~------------  260 (351)
                      ++........   ... +.|+| +|+++++++                .++.|++||+.+++......            
T Consensus       274 g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  349 (396)
T 3c5m_A          274 LENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR  349 (396)
T ss_dssp             CCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS
T ss_pred             CCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccc
Confidence            8754433221   233 89999 999888754                34789999998876543321            


Q ss_pred             ---cceeEEecCCceeeeeeccc
Q psy519          261 ---YPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       261 ---~~~~~~s~~~~~~~~~~~~~  280 (351)
                         ...+.|+|+|+.+++.....
T Consensus       350 ~~~~~~~~~s~dg~~l~~~s~~~  372 (396)
T 3c5m_A          350 QITHPHPSFTPNDDGVLFTSDFE  372 (396)
T ss_dssp             STTCCCCEECTTSSEEEEEECTT
T ss_pred             cCCCCCceEccCCCeEEEEecCC
Confidence               34578999999888776543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.9e-21  Score=176.13  Aligned_cols=225  Identities=12%  Similarity=0.094  Sum_probs=161.8

Q ss_pred             ccceEEEEECCCCcE-EEEeC-CCcEEEEeCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCC-
Q psy519           50 DMTVWSVEACSKGLA-LTGSR-DTTARLWSLEQMYPLRIFVGHK-QDVTCARFHPKITYIGTGSY---DKAVRLWSITD-  122 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~~~-d~~i~vw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~-  122 (351)
                      ..+|++++|+|||+. +.++. |++++||++.+++..+ +..+. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            567999999999987 66665 9999999997766554 44444 68899999999 77777765   45555655432 


Q ss_pred             --CceeEEeccCCCCeEEEEEccCCCEE-EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC
Q psy519          123 --GASVRVFSDHVSPVLSIAFSPCGKYL-ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED  199 (351)
Q Consensus       123 --~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  199 (351)
                        +... .+... ..+...+|+|+|+.+ ++...   ++.+.+||+.+++.......+.   .+++|+|||+++++++.+
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence              2222 44322 334567889988643 33333   5556699999887655544333   789999999999988776


Q ss_pred             ----CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeee----eecceeE----
Q psy519          200 ----GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG--TVQFYGWPSASKIGI----GVYPRCA----  265 (351)
Q Consensus       200 ----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~----~~~~~~~----  265 (351)
                          +.|++||+.+++.. .+. .+...+..++|+|||++|+++..++  .|++||+.+++....    ..+..++    
T Consensus       171 ~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             ETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred             CCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence                78999999888765 332 4556789999999999999888888  899999998876621    1223456    


Q ss_pred             ----EecCCceeeeeeccceeeEEE
Q psy519          266 ----AQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       266 ----~s~~~~~~~~~~~~~~~~~~~  286 (351)
                          |+|||..+++...++..+.+.
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEE
Confidence                999997677777777544433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=1e-20  Score=179.26  Aligned_cols=241  Identities=10%  Similarity=0.063  Sum_probs=174.8

Q ss_pred             ceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCC-----eEEEEEeCCCCEEEEEeCC---------CcEEE
Q psy519           52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQD-----VTCARFHPKITYIGTGSYD---------KAVRL  117 (351)
Q Consensus        52 ~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----i~~i~~~~~~~~l~~~~~d---------g~i~i  117 (351)
                      ....+.|+|+|+++..+ |++|++||+.+++....+.+|...     ...++|||||++|+.++.+         +.+.+
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            45688999999885445 999999999999987777776532     2347899999999998875         56789


Q ss_pred             EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe-ccCCCCE---------------
Q psy519          118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF-SDHVSPV---------------  181 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i---------------  181 (351)
                      ||+.+++... +..+...+...+|||||+.|+.+.    ++.|++||+.+++..+.. .++...+               
T Consensus        97 ~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           97 YDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE----CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            9999987543 556778899999999999999884    789999999887654422 1222222               


Q ss_pred             --EEEEECCCCcEEEEEcCCC------------------------------------eEEEEEcCC---Cc--EEEEeec
Q psy519          182 --LSIAFSPCGKYLASGGEDG------------------------------------LVLTHELTT---GR--VISRFHL  218 (351)
Q Consensus       182 --~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~  218 (351)
                        ..+.|||||++|+..+.|.                                    .|++||+.+   ++  ....+..
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence              3489999999998875221                                    588899988   63  2223322


Q ss_pred             -----cCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc-------eee---e---ee-----cceeEEecCCc
Q psy519          219 -----QEHEPVTSLVWSVTGETLVTGSL----TGTVQFYGWPSAS-------KIG---I---GV-----YPRCAAQPVGF  271 (351)
Q Consensus       219 -----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~-------~~~---~---~~-----~~~~~~s~~~~  271 (351)
                           .+...+..++|+|||+.++....    +..|.+||+.+++       ...   .   ..     .....|+|||+
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence                 14456889999999997665433    3479999998876       111   1   11     23689999999


Q ss_pred             eee-eeeccceeeEEEeeeceeCceEEE
Q psy519          272 EAA-TLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      .++ ..+..+....+.+|+...+....+
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~l  359 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCTFI  359 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceEec
Confidence            887 665555566788888766654433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=2.2e-19  Score=153.55  Aligned_cols=235  Identities=14%  Similarity=0.126  Sum_probs=179.7

Q ss_pred             ccceEEeeecCCccccEEEEecCC------------------------CceEEEecCCc------cCCCccceEEEEECC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQ------------------------KNLQSRYLPYY------TSGHDMTVWSVEACS   60 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~------------------------~~i~i~~~~~~------~~~~~~~i~~~~~~~   60 (351)
                      -..+.+++++|+  |+++++...+                        +.|.+||..++      ..++-.....+++++
T Consensus        23 l~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            357899999999  9999888776                        47999998755      223445788999999


Q ss_pred             CCcE-EEEeCCCcEEEEeCCCCe-eeEEe---------eCCCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEeCCCCceeE
Q psy519           61 KGLA-LTGSRDTTARLWSLEQMY-PLRIF---------VGHKQDVTCARFHP-KITYIGTGS-YDKAVRLWSITDGASVR  127 (351)
Q Consensus        61 ~~~~-~~~~~d~~i~vw~~~~~~-~~~~~---------~~~~~~i~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~  127 (351)
                      +|.+ ++...++.|++|+..... .+..+         ..+......++++| ++.++++.+ .++.|++|| .+++.+.
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            9988 777788999999986542 44444         23444688999999 788888876 689999999 5677766


Q ss_pred             EeccC----------CCCeEEEEEccC-CCEEEEEecCCCCCeEEEEEccCCceeEEec--cCCCCEEEEEECCCCcEEE
Q psy519          128 VFSDH----------VSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLA  194 (351)
Q Consensus       128 ~~~~~----------~~~i~~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~  194 (351)
                      .+...          ......++++|+ +.++++...   ++.|++||..+++.+..+.  .+...+..++++| +..+.
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---CCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence            66422          234789999998 555555555   8899999998888888774  4556788999999 43333


Q ss_pred             EE-------cCCCeEEEEEcCCCcEEEEee--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          195 SG-------GEDGLVLTHELTTGRVISRFH--LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       195 ~~-------~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +.       ..+..|++||+.+++.+..+.  ..+...+..++++|+|.++++...++.|++|++..
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            33       334589999999999888763  13346789999999998888888899999999764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.87  E-value=1.9e-19  Score=168.57  Aligned_cols=284  Identities=12%  Similarity=0.040  Sum_probs=191.9

Q ss_pred             CCCccceEEeeecCCccccEEEEe--cCCCceEEEecCCc-----cCCCccceE---------EEEEC--CCCcE-EEEe
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANL--ESQKNLQSRYLPYY-----TSGHDMTVW---------SVEAC--SKGLA-LTGS   68 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~--~~~~~i~i~~~~~~-----~~~~~~~i~---------~~~~~--~~~~~-~~~~   68 (351)
                      .+|...+..++|+++  +-+++..  +.++...||.....     +..+...+.         ...|+  |||+. +..+
T Consensus        20 ~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           20 ASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             hhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            357788999999988  7777777  56788999985332     445555555         55565  89865 4444


Q ss_pred             C--CCcEEEEeCC--C-CeeeEEeeC-----CCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCC------
Q psy519           69 R--DTTARLWSLE--Q-MYPLRIFVG-----HKQDVTCARFHPKITYIGTGSYD----------KAVRLWSITD------  122 (351)
Q Consensus        69 ~--d~~i~vw~~~--~-~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~------  122 (351)
                      .  +..|.++++.  . ++ ...+..     |...+..++|+|||+.|++++.+          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            3  4667777765  3 43 344544     56778899999999999988876          5899999987      


Q ss_pred             CceeEEec-cCCCCeEEEEEccCCCEEEEEecCC-----CCCeEEEEEcc-CC---ceeEEeccCCCCEEEEEECCCCcE
Q psy519          123 GASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGS-----YDKAVRLWSIT-DG---ASVRVFSDHVSPVLSIAFSPCGKY  192 (351)
Q Consensus       123 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~-----~d~~i~i~d~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~  192 (351)
                      ++. ..+. .+...+..++|+|||++|+.++...     ....|++||+. ++   +.......+...+..+.|+|||++
T Consensus       177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence            544 4454 5567788899999999999877511     01479999998 56   333444445678999999999998


Q ss_pred             EEEEcCCC--eEEEEEcCCCcEEEEeeccCCCC--------EEEEEEcCCCCEEEEEeCCCeEEEE--eCCCCceeee--
Q psy519          193 LASGGEDG--LVLTHELTTGRVISRFHLQEHEP--------VTSLVWSVTGETLVTGSLTGTVQFY--GWPSASKIGI--  258 (351)
Q Consensus       193 l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~i~--~~~~~~~~~~--  258 (351)
                      ++++..++  .|++||+.+++...... .+...        +..++|+|+++++++++. +.+++|  |+.+++....  
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~  333 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAG  333 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred             EEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence            88888888  67777776666443222 11111        567899999999999998 999999  6555553322  


Q ss_pred             --eecceeEEecCCceeeeee-ccceeeEEEeeeceeCceEEE
Q psy519          259 --GVYPRCAAQPVGFEAATLA-ANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       259 --~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~  298 (351)
                        ..+..+ +++++..++... .......+..++..+++...+
T Consensus       334 ~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          334 PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence              112222 267776544433 333334455566666664444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=2.9e-18  Score=146.85  Aligned_cols=265  Identities=14%  Similarity=0.044  Sum_probs=189.1

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc--cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      ..|.+++|+|+  +..++....++.++.|.-...  +..+...+.+++|+++|++ +++..++.|.+||.++++......
T Consensus         6 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            6 QDLPTLFYSGK--SNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCCBCCSCGG--GGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             cccceeeecCC--ccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            45788999999  888887778889999933222  4455667789999999998 677888999999999887665544


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEEecC---CCCCe
Q psy519           89 GHKQDVTCARFHPKITYIGTGSYD----KAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTG---SYDKA  159 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~---~~d~~  159 (351)
                      .+...+.+++++|+++++++...+    +.|.+||..+++....+.  .....+.+++++|+|+++++....   ...+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            566789999999999888777666    689999988776543332  234578999999999887765420   00245


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEE-EEcCCCeEEEEEcCC-CcEEEEe------eccCCCCEEEEEEcC
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGEDGLVLTHELTT-GRVISRF------HLQEHEPVTSLVWSV  231 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~------~~~~~~~v~~~~~~~  231 (351)
                      |..+|..+++... +......+..++|+|+++.++ +.+.++.|.+||+.+ +.....+      .......+..+++++
T Consensus       164 l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~  242 (333)
T 2dg1_A          164 VYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  242 (333)
T ss_dssp             EEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             EEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC
Confidence            6667765544333 222334578999999998655 455678999999963 3322211      111224678899999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeee-----------ecceeEEecCCceeeeeeccc
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIGIG-----------VYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      +|+++++...++.|.+||.. ++.+...           .+..++|+|++..+.++...+
T Consensus       243 ~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            99988888788999999984 5444331           356788999987766655554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=6.8e-18  Score=144.30  Aligned_cols=234  Identities=15%  Similarity=0.069  Sum_probs=172.6

Q ss_pred             CccceEEEEECCCCcE-EEEeCC------------------------CcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCC
Q psy519           49 HDMTVWSVEACSKGLA-LTGSRD------------------------TTARLWSLEQMYPLRIFV-GHKQDVTCARFHPK  102 (351)
Q Consensus        49 ~~~~i~~~~~~~~~~~-~~~~~d------------------------~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~  102 (351)
                      .-+.+.+++++++|++ ++...+                        +.|.+||..+++.+..+. .+-.....++++|+
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            3467899999999988 555555                        379999999888776654 34457899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCc-eeEEe---------ccCCCCeEEEEEcc-CCCEEEEEe-cCCCCCeEEEEEccCCce
Q psy519          103 ITYIGTGSYDKAVRLWSITDGA-SVRVF---------SDHVSPVLSIAFSP-CGKYLASGG-TGSYDKAVRLWSITDGAS  170 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~~~~d~~i~i~d~~~~~~  170 (351)
                      ++++++...++.|++||..... .+..+         ..+......++++| +++++++.+ .   ++.|++|| .+++.
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---NSRIVQFS-PSGKF  177 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---CCEEEEEC-TTSCE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---CCeEEEEc-CCCCE
Confidence            9988888888999999976442 44444         23344689999999 788777764 5   88999999 56777


Q ss_pred             eEEeccCC----------CCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcC------C
Q psy519          171 VRVFSDHV----------SPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSV------T  232 (351)
Q Consensus       171 ~~~~~~~~----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~------~  232 (351)
                      +..+....          ..+..++++|+ +.++++...++.|++||..+++.+..+... ....+..++|+|      +
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            76664222          33789999998 777788888999999999888888877533 235788999999      3


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeee--------ecceeEEecCCceeeeeeccceeeEEE
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKIGIG--------VYPRCAAQPVGFEAATLAANSRVRTLR  286 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~~~~~~~~~~~~  286 (351)
                      |+..++...+..|++|+..+++.+...        ....++++|+|..+++...++++..+.
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            332233334558999999999877652        245789999996665555555444433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=7.7e-20  Score=160.27  Aligned_cols=260  Identities=8%  Similarity=-0.048  Sum_probs=172.9

Q ss_pred             ceEEEEECCCCcE-EEEeC---CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           52 TVWSVEACSKGLA-LTGSR---DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      .+..++|+|+|+. +....   +..|.+||+.+++.......+......+.|+||++.|+.++.++.|++||+.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            3667899999987 44433   2478899999887654443333333347899999999999999999999999887665


Q ss_pred             EeccCCCCeEE-------------------EEEccCCCEEEEEe--cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEE
Q psy519          128 VFSDHVSPVLS-------------------IAFSPCGKYLASGG--TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF  186 (351)
Q Consensus       128 ~~~~~~~~i~~-------------------~~~~~~~~~l~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  186 (351)
                      ....+......                   +.|+|+++.++...  ....+..|.+||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            55433332222                   34567777665442  0012678999999888765544 45677899999


Q ss_pred             CC-CCcEEEEEcCC------CeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q psy519          187 SP-CGKYLASGGED------GLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSA  253 (351)
Q Consensus       187 ~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~  253 (351)
                      +| +++.|+..+.+      ..|.+||+..++.. .+.... ...+..+.|+|+|++|+.++.+     +.|++||+.++
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            99 78877766543      46888998765433 232111 2357889999999987776543     45999999988


Q ss_pred             ceeeeee--cceeEEec-CCceeeeeecc-------------ceeeEEEeeeceeCceEEEeeEE---------------
Q psy519          254 SKIGIGV--YPRCAAQP-VGFEAATLAAN-------------SRVRTLREMHEIVGPVVVVESFI---------------  302 (351)
Q Consensus       254 ~~~~~~~--~~~~~~s~-~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~---------------  302 (351)
                      +......  .....|+| +|..+++...+             .....+.+|+..++....+....               
T Consensus       275 ~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~  354 (396)
T 3c5m_A          275 ENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHP  354 (396)
T ss_dssp             CEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCC
T ss_pred             CeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCC
Confidence            6544321  12278999 99977765432             12356778887766544433211               


Q ss_pred             -EEecCCceeec
Q psy519          303 -VEIRPDKWYEA  313 (351)
Q Consensus       303 -~~~~~~~~~~~  313 (351)
                       ..|+|++.+..
T Consensus       355 ~~~~s~dg~~l~  366 (396)
T 3c5m_A          355 HPSFTPNDDGVL  366 (396)
T ss_dssp             CCEECTTSSEEE
T ss_pred             CceEccCCCeEE
Confidence             36788887654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.83  E-value=1.7e-17  Score=137.65  Aligned_cols=238  Identities=5%  Similarity=-0.092  Sum_probs=173.7

Q ss_pred             ceEEeeecCCccccEEE-EecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy519           13 HFIQNSFKPETVEDVLA-NLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~-~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~   86 (351)
                      ...+++++|+  |.+++ +...++.|.+|+....     ...+...+.++++.++|.+..+..++.|.+||.........
T Consensus        25 ~p~~i~~~~~--g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSA--GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTT--CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEECCC--CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeee
Confidence            6788999999  98777 5467889999987654     12333567889999999884444488999999876544322


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519           87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus        87 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .......+.++++.++++++++...++.|.+|+..+.............+.+++++++|+++++...   ++.|.+||..
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~  179 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD---NNRVVKLEAE  179 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG---GTEEEEECTT
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC---CCEEEEEecC
Confidence            2223357899999999997777777889999986655433322233346788999999987776655   7899999987


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      ..........+...+..++++++|.++++...++.|.+||....... .....+...+.+++++++|+++++...++.|+
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            66544333333367889999999988887777889999998655433 23222335789999999999888888899999


Q ss_pred             EEeCCCCcee
Q psy519          247 FYGWPSASKI  256 (351)
Q Consensus       247 i~~~~~~~~~  256 (351)
                      ++++...+..
T Consensus       259 ~~~~~~~~~~  268 (270)
T 1rwi_B          259 KLTSLEHHHH  268 (270)
T ss_dssp             EECCCGGGSC
T ss_pred             EEcCCCcccc
Confidence            9998876543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.83  E-value=3.8e-18  Score=160.92  Aligned_cols=246  Identities=10%  Similarity=0.007  Sum_probs=176.4

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCC-----ceEEEecCCc--c--CCCccceEEEEECCCCcE-EEEeCCCc--
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQK-----NLQSRYLPYY--T--SGHDMTVWSVEACSKGLA-LTGSRDTT--   72 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~-----~i~i~~~~~~--~--~~~~~~i~~~~~~~~~~~-~~~~~d~~--   72 (351)
                      .+..+|...+..++||||  |++||.+..++     .|++||+.++  .  ......+..++|+|||+. +.++.++.  
T Consensus       118 ~l~~~~~~~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          118 ILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             GGCTTSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             HhccCCCEEEEEEEECCC--CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccc
Confidence            445566667889999999  99999775533     8999999887  1  112223567999999976 66666655  


Q ss_pred             --------------EEEEeCCCCee--eEEee--CCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCC------C
Q psy519           73 --------------ARLWSLEQMYP--LRIFV--GHKQDVTCARFHPKITYIGTGSY-----DKAVRLWSITD------G  123 (351)
Q Consensus        73 --------------i~vw~~~~~~~--~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~  123 (351)
                                    |++|++.+++.  ...+.  .+...+..+.|+|||++|+.++.     +..|++||+.+      +
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          99999988762  22223  24555789999999999887764     56899999976      4


Q ss_pred             c-eeEEeccCCCCeEEEEEccCCCEEEEEecCC-CCCeEEEEEccCCc--eeEEeccCCC--CEEEEEECCCCcEEEEEc
Q psy519          124 A-SVRVFSDHVSPVLSIAFSPCGKYLASGGTGS-YDKAVRLWSITDGA--SVRVFSDHVS--PVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       124 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~d~~i~i~d~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~l~~~~  197 (351)
                      . ....+..+...+.. .|+|+|+.|+..+... .+..|.+||+.++.  ....+..+..  .+..+.|++++.++++..
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            3 35555555555554 5889998887765421 14579999998764  2344444433  577899998888888888


Q ss_pred             CCCe--EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE-e---CCCeEEEEeCCCCc
Q psy519          198 EDGL--VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG-S---LTGTVQFYGWPSAS  254 (351)
Q Consensus       198 ~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~i~~~~~~~  254 (351)
                      .++.  |.+||+.+++.+..+... ...+..+.++|+++.++.. +   ..++++.||+.+++
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8874  667787678777777543 5678889999998766533 2   34799999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=1e-17  Score=144.14  Aligned_cols=250  Identities=8%  Similarity=0.014  Sum_probs=166.0

Q ss_pred             cceEEeeecCCccccEEEEec---------CCCceEEEecCCccCCCccceEEEEECCCCcE-EEEeCC---C--cEEEE
Q psy519           12 KHFIQNSFKPETVEDVLANLE---------SQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA-LTGSRD---T--TARLW   76 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~---------~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d---~--~i~vw   76 (351)
                      ..+...++  +  |++++...         .++.|.+|++.......-..+..+.|+|+|+. +..+.+   +  .|.+|
T Consensus        15 ~~~~~~~~--d--G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~   90 (347)
T 2gop_A           15 AYLSDPRT--K--GELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVA   90 (347)
T ss_dssp             CEEEEEEE--E--TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEEESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred             EEcccceE--C--CcEEEEEEeecCcccCCccceEEEEeCCCCceEEcccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence            55677788  7  88888752         25678899987651111156788999999976 544432   2  48888


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEeCCCCceeEEe
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD---------------------------KAVRLWSITDGASVRVF  129 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~  129 (351)
                      ++.+++.......+ . +..++|+||++.|+.++.+                           ..|++||+.+++.+..+
T Consensus        91 ~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l  168 (347)
T 2gop_A           91 DLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF  168 (347)
T ss_dssp             ETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence            99888766555433 3 8999999999988887632                           57999999988764555


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCC-C--C-eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC------
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSY-D--K-AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED------  199 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~-d--~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------  199 (351)
                      .. . .+..++|+|+| +++++..... .  . ...+|.+.+++ ...+..+ ..+..+  +|||++|+.++.+      
T Consensus       169 ~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~  241 (347)
T 2gop_A          169 EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMS  241 (347)
T ss_dssp             EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCC
T ss_pred             cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCcc
Confidence            44 3 78899999999 7776654110 0  2 34444444444 3444344 455544  9999988877643      


Q ss_pred             --CeEEEEEcCCCcEEEEeeccCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCce
Q psy519          200 --GLVLTHELTTGRVISRFHLQEHEPVTS-LVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFE  272 (351)
Q Consensus       200 --g~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~  272 (351)
                        ..|.+||  +++. ..+...+...+.. +.|+ ++ ++++++.++.+++| +.+++....    ..+..++|+|  ..
T Consensus       242 ~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~  313 (347)
T 2gop_A          242 EHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IV  313 (347)
T ss_dssp             SSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SE
T ss_pred             ccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cE
Confidence              4688888  4543 3333234466776 9999 88 88899999999999 876554332    2345677887  44


Q ss_pred             eeeeecccee
Q psy519          273 AATLAANSRV  282 (351)
Q Consensus       273 ~~~~~~~~~~  282 (351)
                      +++...++..
T Consensus       314 ~~~~~~~~~~  323 (347)
T 2gop_A          314 VYLKETATRL  323 (347)
T ss_dssp             EEEEECSSSC
T ss_pred             EEEEcCCCCh
Confidence            4444444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1e-16  Score=134.09  Aligned_cols=233  Identities=11%  Similarity=0.064  Sum_probs=170.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee------CCCCCeEEEEEe-CCCCEEEEEeC-CCcEE
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV------GHKQDVTCARFH-PKITYIGTGSY-DKAVR  116 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~------~~~~~i~~i~~~-~~~~~l~~~~~-dg~i~  116 (351)
                      ..++-..+.++++++++.+ ++...++.|.+||.+ ++.+..+.      ++...+..+++. ++++++++... ++.|+
T Consensus        25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            3456678999999999988 676788999999987 55555553      234578899995 67766665533 78999


Q ss_pred             EEeCCCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec--cCCCCEEEEEECCCCcEE
Q psy519          117 LWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       117 i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l  193 (351)
                      +|| .+++.+..+.. +...+.+++++|+|+++++...   ++.|.+||. .++.+..+.  .+...+..++++|+++++
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECC---CCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence            999 56776666632 3457899999999987777666   789999996 455555553  344568999999999988


Q ss_pred             EEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeee-------eccee
Q psy519          194 ASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSLTG-TVQFYGWPSASKIGIG-------VYPRC  264 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~-------~~~~~  264 (351)
                      ++...++.|++||. +++.+..+.... ...+..++++++|+++++...++ .|.+|+.. ++.+...       ....+
T Consensus       179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence            88888999999997 456666554322 25789999999999888887776 99999954 4444331       13468


Q ss_pred             EEecCCceeeeeeccceeeEEEeeec
Q psy519          265 AAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       265 ~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      +++|+|..+++ ..++   .+++|+.
T Consensus       257 ~~~~~g~l~vs-~~~~---~v~v~~~  278 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDY---RLYIYRY  278 (286)
T ss_dssp             EEETTTEEEEE-ETTT---EEEEEEC
T ss_pred             EECCCCcEEEE-CCCC---eEEEEEc
Confidence            99999976555 4444   4555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.2e-17  Score=144.58  Aligned_cols=239  Identities=11%  Similarity=0.047  Sum_probs=157.8

Q ss_pred             ccEEEEec------CCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEe----------CCCcEEEEeCCCCe
Q psy519           25 EDVLANLE------SQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGS----------RDTTARLWSLEQMY   82 (351)
Q Consensus        25 ~~~l~~~~------~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~----------~d~~i~vw~~~~~~   82 (351)
                      ++++.+..      .|+.|.+||..+.     ...+..+  .++|+|+|++ +++.          .++.|.+||+.+++
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            66655543      3678999998766     3334444  8999999987 4443          36779999999988


Q ss_pred             eeEEeeCC------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCC-CEEEEEe
Q psy519           83 PLRIFVGH------KQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCG-KYLASGG  152 (351)
Q Consensus        83 ~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~  152 (351)
                      .+..+...      ......++++|+|++|+++..  ++.|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEE
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEEC
Confidence            88777532      234567999999999998874  57899999999988777 4321 1 1112223322 1222222


Q ss_pred             c----------C-----------------------------------CCCCeEEEEEccCCce--eEEecc------CC-
Q psy519          153 T----------G-----------------------------------SYDKAVRLWSITDGAS--VRVFSD------HV-  178 (351)
Q Consensus       153 ~----------~-----------------------------------~~d~~i~i~d~~~~~~--~~~~~~------~~-  178 (351)
                      .          .                                   +.++.+.++|+.....  ...+..      .. 
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            2          0                                   0033445555433221  111100      00 


Q ss_pred             ---CCEEEEEECCCCcEEEEEcC-----------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe
Q psy519          179 ---SPVLSIAFSPCGKYLASGGE-----------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT  244 (351)
Q Consensus       179 ---~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  244 (351)
                         .....++|+|+++.++++..           .+.|.+||+.+++.+..+....   +.+++|+|+|++|++++. +.
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~  326 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GN  326 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SC
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-Ce
Confidence               01112688999888777643           3489999999999999886433   899999999999998887 99


Q ss_pred             EEEEeCCCC--ceeeee-----ecceeEEecCCc
Q psy519          245 VQFYGWPSA--SKIGIG-----VYPRCAAQPVGF  271 (351)
Q Consensus       245 i~i~~~~~~--~~~~~~-----~~~~~~~s~~~~  271 (351)
                      |.+||..++  +.+...     ....++++|+|.
T Consensus       327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999999  777652     224578888775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=3.6e-15  Score=125.24  Aligned_cols=233  Identities=9%  Similarity=-0.038  Sum_probs=174.2

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCee
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      +...+.+++++|+  |.++++...++.|..|+....     ...+...+.++++.++|.+ ++...++.|..|+.+ ++.
T Consensus        13 ~~~~~~~i~~d~~--g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           13 QDTGPYGITVSDK--GKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             SSCCEEEEEECTT--SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cCCCccceEECCC--CCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence            4467899999999  998887766789999998733     2234567899999999988 555557889999986 332


Q ss_pred             eEEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           84 LRIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        84 ~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                       ..+.  .....+.++++.++++++++...++.|..||. +++.... .......+.+++++++|++.++...   ++.|
T Consensus        90 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i  164 (299)
T 2z2n_A           90 -KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ---NNAI  164 (299)
T ss_dssp             -EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEE
T ss_pred             -EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC---CCEE
Confidence             2222  24557899999999988887777889999998 5554332 2334567899999999988777655   7899


Q ss_pred             EEEEccCCceeEE-eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEE
Q psy519          161 RLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       161 ~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  238 (351)
                      ..||. +++.... .......+..++++++++++++...++.|..||. +++... +... ....+.+++++++|+++++
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEe
Confidence            99998 6654432 3334456889999999998777777889999999 666433 3222 3367899999999997777


Q ss_pred             EeCCCeEEEEeCCCCc
Q psy519          239 GSLTGTVQFYGWPSAS  254 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~  254 (351)
                      ...++.|..||. +++
T Consensus       242 ~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNI  256 (299)
T ss_dssp             ETTTTEEEEEET-TTE
T ss_pred             ccCCceEEEECC-CCc
Confidence            667889999998 443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=9.1e-17  Score=135.20  Aligned_cols=234  Identities=12%  Similarity=-0.024  Sum_probs=169.6

Q ss_pred             CccceEEeeecCCcccc-EEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           10 DHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      +.....+++|+|+  ++ +++++..++.|..|+....   +..+...+.+++++++|++ ++...++.|.+||..+++..
T Consensus        26 ~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           26 GFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            3445678999999  98 7788888899999998875   3445677899999999998 55555689999999887754


Q ss_pred             EEeeCC----CCCeEEEEEeCCCCEEEEE----e-------------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc
Q psy519           85 RIFVGH----KQDVTCARFHPKITYIGTG----S-------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP  143 (351)
Q Consensus        85 ~~~~~~----~~~i~~i~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  143 (351)
                      ......    ...+..++++|+|+++++.    +             ..+.|..++.. ++ ...+..+......++|+|
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~  181 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLP  181 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECT
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECC
Confidence            333211    1345679999999988873    2             13466666655 44 334444566778999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEcc-CCce---eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc
Q psy519          144 CGKYLASGGTGSYDKAVRLWSIT-DGAS---VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ  219 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  219 (351)
                      +++.+++...   ++.|.+||+. +++.   ...+..+...+..++++++|+++++.  ++.|.+||.. ++.+..+...
T Consensus       182 dg~~lv~~~~---~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~  255 (296)
T 3e5z_A          182 SGNLLVSDTG---DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP  255 (296)
T ss_dssp             TSCEEEEETT---TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS
T ss_pred             CCCEEEEeCC---CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC
Confidence            9999865555   7899999997 4543   23333344556789999999876666  7889999986 7777777543


Q ss_pred             CCCCEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          220 EHEPVTSLVW-SVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       220 ~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      . . +.+++| .|+++.|++++.+ .+.-++.++.+..
T Consensus       256 ~-~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          256 Q-T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             S-C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred             C-C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence            3 3 889999 5899989888875 5556666665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=9.5e-18  Score=157.03  Aligned_cols=234  Identities=12%  Similarity=0.013  Sum_probs=160.8

Q ss_pred             Eeeec--CCccccE-EEEecC-CCceEEEecC--C-c----cCC-----CccceEEEEECCCCcE-EEEeCC--------
Q psy519           16 QNSFK--PETVEDV-LANLES-QKNLQSRYLP--Y-Y----TSG-----HDMTVWSVEACSKGLA-LTGSRD--------   70 (351)
Q Consensus        16 ~~~~s--p~~~~~~-l~~~~~-~~~i~i~~~~--~-~----~~~-----~~~~i~~~~~~~~~~~-~~~~~d--------   70 (351)
                      ...|+  ||  |+. |+.++. +..|.++++.  . .    +..     |...+..++|+|||+. +.++.+        
T Consensus        81 ~~~~~~SPD--g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGVPRPA--GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEECCSS--SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             cceeeeecC--CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            44455  99  988 776654 5678888876  2 3    334     6778899999999987 666655        


Q ss_pred             --CcEEEEeCCC------CeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEeCC-CC---ceeEEe
Q psy519           71 --TTARLWSLEQ------MYPLRIFV-GHKQDVTCARFHPKITYIGTGSYD--------KAVRLWSIT-DG---ASVRVF  129 (351)
Q Consensus        71 --~~i~vw~~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~  129 (351)
                        ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   +.....
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence              5899999988      554 3444 555677889999999999887754        379999998 56   444444


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCCCC--eEEEEEccCCceeEEeccCCCC--------EEEEEECCCCcEEEEEcCC
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSYDK--AVRLWSITDGASVRVFSDHVSP--------VLSIAFSPCGKYLASGGED  199 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~d  199 (351)
                      ..+...+..++|+|||++++++..   ++  .|.+||+.+++.......+...        +..++|+|+++++++++. 
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDR---TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECT---TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             CCCCceEcceEECCCCeEEEEECC---CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence            445788999999999997777665   66  6777777666544333322211        457889999999999998 


Q ss_pred             CeEEEE--EcCCCcEEEEeeccCCCCEEEE-EEcCCCCEEEEEeCCC--eEEEEeCCCCceeee
Q psy519          200 GLVLTH--ELTTGRVISRFHLQEHEPVTSL-VWSVTGETLVTGSLTG--TVQFYGWPSASKIGI  258 (351)
Q Consensus       200 g~i~i~--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~  258 (351)
                      +.+++|  |+.+++ +..+. .+...+..+ +++.+.-++++++.+.  .|..+|+.+++....
T Consensus       314 ~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          314 GAAVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             SSCEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             CccEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            988888  555454 55554 334556666 4443333344445553  566667777765443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=1.5e-15  Score=138.01  Aligned_cols=310  Identities=10%  Similarity=-0.031  Sum_probs=210.3

Q ss_pred             ccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC--CCeeeEEeeCCCCCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~i~~i   97 (351)
                      +.++++...++.|.++|..+.    .......+..+.|+|+|++ ++++.|+.|.+||+.  +++.+..+.... ....+
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~i  245 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSI  245 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCcee
Confidence            567777788999999999876    1122345678999999988 778899999999995  778777776544 45789


Q ss_pred             EEe----CCCCEEEEEeC-CCcEEEEeCCCCceeEEeccC-----------CCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           98 RFH----PKITYIGTGSY-DKAVRLWSITDGASVRVFSDH-----------VSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        98 ~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +|+    |||+++++++. ++++.++|..+.+.+..+...           ...+..+..++++..++....  .+|.|.
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~--~~g~v~  323 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--ETGKIL  323 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--TTTEEE
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec--CCCeEE
Confidence            999    69998887765 589999999999888776421           226788889998776555443  279999


Q ss_pred             EEEccCCceeEEec-cCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeec-cCC-CCEEEEE-EcCCCCEE
Q psy519          162 LWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVISRFHL-QEH-EPVTSLV-WSVTGETL  236 (351)
Q Consensus       162 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~~~-~~~~~~~l  236 (351)
                      ++|....+.+.... ........+.|+|+++++++++ .++.|.++|+.+++.+..+.. ... .+-.... ++|++..+
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence            99987754332211 2334577899999999887665 578999999999988877764 211 1111222 57875444


Q ss_pred             -EEEe-CCCeEEEEeCCC-------Cceeeeeec-----ceeEEecCCceeeeeeccce----eeEEEeeeceeC-----
Q psy519          237 -VTGS-LTGTVQFYGWPS-------ASKIGIGVY-----PRCAAQPVGFEAATLAANSR----VRTLREMHEIVG-----  293 (351)
Q Consensus       237 -~~~~-~dg~i~i~~~~~-------~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~g-----  293 (351)
                       +++. .++.|.++|..+       .+.++....     ..+..+|+++++.+....+.    ...+.+++..+.     
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~  483 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS  483 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred             EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence             4443 468999999987       445554322     23667999998776553221    123444443332     


Q ss_pred             ----ceEEE-----------eeEEEEecCCceeeccEEE----ecCCccccceeeeeeeeecC
Q psy519          294 ----PVVVV-----------ESFIVEIRPDKWYEANLIV----LDDDLKECNLETYSQMIPVP  337 (351)
Q Consensus       294 ----~~~~~-----------~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~  337 (351)
                          +...+           .....+|+|+|.+.....-    .++.|..+|.++......++
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence                12211           1133689999987654421    25778888888876655444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.80  E-value=9.2e-18  Score=157.87  Aligned_cols=246  Identities=9%  Similarity=-0.055  Sum_probs=172.5

Q ss_pred             cCCCCccceEEeeecCCccccEEEE-----ecCCCceEEEecCCc--c-CCCccce--EEEEECCCCcE-EEEeCCCc--
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLAN-----LESQKNLQSRYLPYY--T-SGHDMTV--WSVEACSKGLA-LTGSRDTT--   72 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~-----~~~~~~i~i~~~~~~--~-~~~~~~i--~~~~~~~~~~~-~~~~~d~~--   72 (351)
                      +..+|...+..++||||  |++||.     |+.+..|++||+.++  . ..+...+  ..++|+|||+. +.++.|..  
T Consensus       115 ~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          115 WSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             hccCCCEEEEEEEECCC--CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCC
Confidence            44567778899999999  999994     444578999999887  3 2233334  68999999986 77777665  


Q ss_pred             -----------EEEEeCCCCe----eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCceeEEeccCC
Q psy519           73 -----------ARLWSLEQMY----PLRIFVGHKQDVTCARFHPKITYIGTGSYDK----AVRLWSITDGASVRVFSDHV  133 (351)
Q Consensus        73 -----------i~vw~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~  133 (351)
                                 |++|++.+++    .+.....+...+..+.|+|||++|+.++.++    .|++++..+++. ..+..+.
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~  271 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV  271 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC
Confidence                       9999998876    2222334556788999999999988877665    678887665543 4444455


Q ss_pred             CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce---eEEeccC-CCCEEEEEECCCCcEEEEEcCCCeEEEEEcC-
Q psy519          134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDH-VSPVLSIAFSPCGKYLASGGEDGLVLTHELT-  208 (351)
Q Consensus       134 ~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  208 (351)
                      ..+....+ ++|.+++.+.....++.|.+||+.++..   ...+..+ ...+..++|+ ++.++++...|+..++|.+. 
T Consensus       272 ~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          272 GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence            56666666 5666444443212368899999987653   3333333 4457888888 77888888889988877654 


Q ss_pred             CCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCcee
Q psy519          209 TGRVISRFHLQEHEPVTSLVWSVTGETLVTGS----LTGTVQFYGWPSASKI  256 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~~~~~~~~~  256 (351)
                      +++....+.......+..+.++|+++.++...    ..++|++||+.+++..
T Consensus       350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          350 KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            45556666544456678889999998776332    3478999999887643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=1.7e-16  Score=149.72  Aligned_cols=245  Identities=8%  Similarity=0.006  Sum_probs=169.7

Q ss_pred             CCccceEEEEECCCCcE-EEEeC-CC----cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCc-------
Q psy519           48 GHDMTVWSVEACSKGLA-LTGSR-DT----TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKA-------  114 (351)
Q Consensus        48 ~~~~~i~~~~~~~~~~~-~~~~~-d~----~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-------  114 (351)
                      +|...+..++|+|||++ +.+.. +|    .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            34457889999999987 44433 23    8999999999876543222 23667999999999999887766       


Q ss_pred             ---------EEEEeCCCCcee--EEec--cCCCCeEEEEEccCCCEEEEEecCCC--CCeEEEEEccC------Cc-eeE
Q psy519          115 ---------VRLWSITDGASV--RVFS--DHVSPVLSIAFSPCGKYLASGGTGSY--DKAVRLWSITD------GA-SVR  172 (351)
Q Consensus       115 ---------i~i~d~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~--d~~i~i~d~~~------~~-~~~  172 (351)
                               |++|++.+++..  ..+.  .+...+..+.|+|||++|+.......  +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999887632  2222  24556789999999999988764221  46899999986      43 355


Q ss_pred             EeccCCCCEEEEEECCCCcEEEEEcCC----CeEEEEEcCCCcE--EEEeeccCC-CCEEEEEEcCCCCEEEEEeCCCe-
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLASGGED----GLVLTHELTTGRV--ISRFHLQEH-EPVTSLVWSVTGETLVTGSLTGT-  244 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~-  244 (351)
                      .+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..... ..+..++|++++.++++...++. 
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            56566655554 488888877766543    3699999987642  233322222 36888999987888888888874 


Q ss_pred             -EEEEeCCCCceeee-----eecceeEEecCCceeeee-eccceeeEEEeeeceeCc
Q psy519          245 -VQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATL-AANSRVRTLREMHEIVGP  294 (351)
Q Consensus       245 -i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~g~  294 (351)
                       |.+|++.+++.+..     ..+..+.++|++..+++. .+......+..|+..+|+
T Consensus       360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             66778766665433     233456788888765544 444556678888887776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.80  E-value=2.9e-16  Score=134.06  Aligned_cols=256  Identities=10%  Similarity=-0.044  Sum_probs=181.8

Q ss_pred             CCCceEEEecCCc-cC----------CCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC
Q psy519           33 SQKNLQSRYLPYY-TS----------GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP  101 (351)
Q Consensus        33 ~~~~i~i~~~~~~-~~----------~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~  101 (351)
                      .++.|.++|..+. ..          ........+.+..+..+++...++.|.+||.++++.+..+.. ......+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence            3789999999876 10          122346778875443447777789999999999998888853 45688999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeEEeccCC-----CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc
Q psy519          102 KITYIGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      +++.+++...++.|.+||..+++....+....     .....+++  ++..++++.. ..++.|.++|+.+++.+..+..
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeEEEEEEc
Confidence            88554444478999999999998777665322     14456777  3455555542 0178999999999988877754


Q ss_pred             CCCCEEEEEECCCCcEEEEEcCC----------CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          177 HVSPVLSIAFSPCGKYLASGGED----------GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      . .....+.++|+|++++++..+          +.|.++|..+++....+.......+..++|+|++++|+++..  .|.
T Consensus       171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~  247 (328)
T 3dsm_A          171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW  247 (328)
T ss_dssp             S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred             C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence            3 345688999999977776654          789999999998887776543457899999999999988765  899


Q ss_pred             EEeCCCCceeee-------eecceeEEecCCceeeeeecc--ceeeEEEeeeceeCceE
Q psy519          247 FYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAAN--SRVRTLREMHEIVGPVV  296 (351)
Q Consensus       247 i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~  296 (351)
                      +||..+++....       .....++++|++..+.++...  .....+.+|+.. |+..
T Consensus       248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            999988775421       234468899966555444311  123456667665 5533

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.80  E-value=5.5e-17  Score=152.61  Aligned_cols=272  Identities=8%  Similarity=-0.010  Sum_probs=180.3

Q ss_pred             ecCCccccEEEEecCCC---ceEEEecC--Cc-----------cCCCccceEEEEECCCCcE-E-E----EeCCCcEEEE
Q psy519           19 FKPETVEDVLANLESQK---NLQSRYLP--YY-----------TSGHDMTVWSVEACSKGLA-L-T----GSRDTTARLW   76 (351)
Q Consensus        19 ~sp~~~~~~l~~~~~~~---~i~i~~~~--~~-----------~~~~~~~i~~~~~~~~~~~-~-~----~~~d~~i~vw   76 (351)
                      .+|+  |++++....++   .-.+|...  ..           ..+|...+..++|+|||++ + +    |+.+..|++|
T Consensus        75 p~~d--G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           75 PSRR--NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             CEEE--TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred             CEEE--CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence            3477  88888765543   34445443  22           2345667999999999987 3 2    2334689999


Q ss_pred             eCCCCeee-EEeeCCCCCeEEEEEeCCCCEEEEEeCCCc-------------EEEEeCCCCce----eEEeccCCCCeEE
Q psy519           77 SLEQMYPL-RIFVGHKQDVTCARFHPKITYIGTGSYDKA-------------VRLWSITDGAS----VRVFSDHVSPVLS  138 (351)
Q Consensus        77 ~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~----~~~~~~~~~~i~~  138 (351)
                      |+.+++.+ .... .......++|+|||+.|+.++.+..             |++|++.+++.    +.....+...+..
T Consensus       153 dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          153 DVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             ETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             ECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            99998865 2111 1111267899999999999988776             99999988762    2223334567889


Q ss_pred             EEEccCCCEEEEEecCCCCC----eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEc---CCCeEEEEEcCCCc
Q psy519          139 IAFSPCGKYLASGGTGSYDK----AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG---EDGLVLTHELTTGR  211 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~  211 (351)
                      +.|+|||++|+.+..   ++    .|+++|..+++ ...+..+...+....+ ++|.+++...   .++.|.+||+.++.
T Consensus       232 ~~~SpDG~~l~~~~~---~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          232 SDLSRDGKYLFVYIL---RGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEECTTSCCEEEEEE---ETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEECCCCCEEEEEEe---CCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            999999999988776   44    67777765554 3444455555566666 5666444443   25789999997765


Q ss_pred             E--EEEeeccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeee------eecceeEEecCCceeee-eeccc
Q psy519          212 V--ISRFHLQE-HEPVTSLVWSVTGETLVTGSLTGTVQFYGWP-SASKIGI------GVYPRCAAQPVGFEAAT-LAANS  280 (351)
Q Consensus       212 ~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~------~~~~~~~~s~~~~~~~~-~~~~~  280 (351)
                      .  ...+...+ ...+..++|+ ++.++++...|+..++|.+. .++....      ..+..++++|++..+++ ..+..
T Consensus       307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  385 (695)
T 2bkl_A          307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT  385 (695)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred             ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            3  22232222 3457888988 67788888889988877654 3433322      23445778898876554 44556


Q ss_pred             eeeEEEeeeceeCceEEEe
Q psy519          281 RVRTLREMHEIVGPVVVVE  299 (351)
Q Consensus       281 ~~~~~~~~~~~~g~~~~~~  299 (351)
                      ....+.+|+..+|+...+.
T Consensus       386 ~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          386 TPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             EEEEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEe
Confidence            6778889998887754443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=5.2e-17  Score=139.77  Aligned_cols=220  Identities=10%  Similarity=0.067  Sum_probs=151.9

Q ss_pred             ceEEeeecCCccccEEEEecCC---C--ceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeC-------------
Q psy519           13 HFIQNSFKPETVEDVLANLESQ---K--NLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSR-------------   69 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~---~--~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~-------------   69 (351)
                      .+..++|||+  |++|++.+.+   +  .|.+|++..+    ...+.. +..++|+|+|+. +.++.             
T Consensus        60 ~~~~~~~SpD--g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           60 NATMPRISPD--GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             SCEEEEECTT--SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             cCCCeEECCC--CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            4677999999  9999887653   2  3777787765    223334 899999999976 55442             


Q ss_pred             --------------CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC-------cEEEEeCCCCceeEE
Q psy519           70 --------------DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK-------AVRLWSITDGASVRV  128 (351)
Q Consensus        70 --------------d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~  128 (351)
                                    ...|++||+.+++.+..+.. . .+..+.|+|++ +++++..++       ...+|.+.+++. ..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence                          25799999998876445544 3 78899999999 777776542       334444434543 33


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCC-----CCCeEEEEEccCCceeEEeccCCCCEEE-EEECCCCcEEEEEcCCCeE
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGS-----YDKAVRLWSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLV  202 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i  202 (351)
                      +..+ ..+..+  +|+|+.|+.++...     ....|.+||  +++.......+...+.. +.|+ |+ ++++++.++.+
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            4334 455544  99999988776411     124688888  55544444455677876 8999 88 88899999999


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeE-EEEeCC
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV-QFYGWP  251 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~i~~~~  251 (351)
                      ++| +.+++.....  .+...+.+++|+|  .++++++.++.. .+|.+.
T Consensus       286 ~l~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          286 NLY-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEE-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEE-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999 8766553333  3466799999999  677777776654 666665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.1e-15  Score=130.71  Aligned_cols=226  Identities=14%  Similarity=0.009  Sum_probs=162.4

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCC----CcEEEEeCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRD----TTARLWSLE   79 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d----~~i~vw~~~   79 (351)
                      +...+.+++|+|+  |++++++..++.|.+|+....     ...+...+.+++++++|++ ++...+    +.|.+||.+
T Consensus        43 ~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           43 KGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             SCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence            3445688999999  998888888899999998765     2245678999999999988 554455    589999998


Q ss_pred             CCeeeEEee--CCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEE
Q psy519           80 QMYPLRIFV--GHKQDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        80 ~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      +++....+.  .+...+..++++|+++++++...      .+.|..+|..+++..... .....+..++|+|+++.++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEE
Confidence            876543332  24457899999999988776653      356777776655443322 233457899999999866555


Q ss_pred             e-cCCCCCeEEEEEccC-CceeEE--------eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          152 G-TGSYDKAVRLWSITD-GASVRV--------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       152 ~-~~~~d~~i~i~d~~~-~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      . .   ++.|.+||+++ +..+..        +..+ ..+..++++++|+++++...++.|.+||. +++.+..+.....
T Consensus       200 ~~~---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~  274 (333)
T 2dg1_A          200 ETT---ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  274 (333)
T ss_dssp             EGG---GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             eCC---CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC
Confidence            3 4   78999999964 333221        1112 35788999999998888777889999998 5666666653321


Q ss_pred             -----CCEEEEEEcCCCCEEEEEeCCC
Q psy519          222 -----EPVTSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       222 -----~~v~~~~~~~~~~~l~~~~~dg  243 (351)
                           ..+.+++|+|+++.|++++.++
T Consensus       275 ~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ccccccCcceEEECCCCCEEEEEeCcc
Confidence                 1588999999987777665553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=5.6e-16  Score=130.35  Aligned_cols=222  Identities=13%  Similarity=0.039  Sum_probs=162.1

Q ss_pred             ccceEEEEECCCCc-E-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           50 DMTVWSVEACSKGL-A-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        50 ~~~i~~~~~~~~~~-~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      .....+++|+|++. + +++..++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.+||..+++...
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            44567899999997 4 88888999999999887  55666677889999999999988877777899999998877544


Q ss_pred             EeccC----CCCeEEEEEccCCCEEEEE----ec----------CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCC
Q psy519          128 VFSDH----VSPVLSIAFSPCGKYLASG----GT----------GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  189 (351)
Q Consensus       128 ~~~~~----~~~i~~~~~~~~~~~l~~~----~~----------~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  189 (351)
                      .....    ...+..++++|+|+++++.    ..          ....+.|..+|.. ++ ...+..+......++|+|+
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTT
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCC
Confidence            33211    2345679999999988873    21          0002456666654 43 3444455667889999999


Q ss_pred             CcEEEEEcCCCeEEEEEcC-CCcE---EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee----ec
Q psy519          190 GKYLASGGEDGLVLTHELT-TGRV---ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG----VY  261 (351)
Q Consensus       190 ~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~----~~  261 (351)
                      ++.+++.+.++.|.+|++. +++.   ...+ ......+..++++++|+++++.  ++.|.+|+.. ++.+...    .+
T Consensus       183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~  258 (296)
T 3e5z_A          183 GNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTT  258 (296)
T ss_dssp             SCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCC
T ss_pred             CCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCc
Confidence            9988777888999999997 4554   2333 2234567789999999976666  7899999987 5554432    25


Q ss_pred             ceeEE-ecCCceeeeeecc
Q psy519          262 PRCAA-QPVGFEAATLAAN  279 (351)
Q Consensus       262 ~~~~~-s~~~~~~~~~~~~  279 (351)
                      ..++| +|++..+.+.+.+
T Consensus       259 ~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             CEEEEESTTSCEEEEEETT
T ss_pred             eeEEEECCCCCEEEEEcCC
Confidence            67888 5888877777665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=3.4e-15  Score=135.71  Aligned_cols=292  Identities=10%  Similarity=-0.007  Sum_probs=200.1

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecC--Cc-----cCCCccceEEEEEC----CCCcE--EEEeCCCcEEEEeCC
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLP--YY-----TSGHDMTVWSVEAC----SKGLA--LTGSRDTTARLWSLE   79 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~--~~-----~~~~~~~i~~~~~~----~~~~~--~~~~~d~~i~vw~~~   79 (351)
                      .+..+.|||+  |+++++++.++.|.+||+.  +.     ... ......++|+    |+|++  ++...++++.|+|..
T Consensus       198 ~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCC--CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            4568999999  9999999999999999995  33     111 2235789999    69977  555567999999999


Q ss_pred             CCeeeEEeeCC-----------CCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEe-ccCCCCeEEEEEccCCC
Q psy519           80 QMYPLRIFVGH-----------KQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        80 ~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~  146 (351)
                      +.+.+..+...           ...+..+..++++..+ +....+|.|.++|....+.+... ........++.|+|+|+
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            99888776421           1257788888876544 44556799999998775432221 12345677899999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEecc-----CCCCEEEEEECCCCcEE-EEEc-CCCeEEEEEcCC-------CcE
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSD-----HVSPVLSIAFSPCGKYL-ASGG-EDGLVLTHELTT-------GRV  212 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~-------~~~  212 (351)
                      +++++...  ++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ +++. .++.|.++|..+       .+.
T Consensus       355 ~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          355 YFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             EEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             EEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            98887643  78899999999987766643     32212222 57875544 4443 468999999987       567


Q ss_pred             EEEeeccCCCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCC---------ceeee----------eecceeEE
Q psy519          213 ISRFHLQEHEPVTSLVWSVTGETLVTGSL-------TGTVQFYGWPSA---------SKIGI----------GVYPRCAA  266 (351)
Q Consensus       213 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~---------~~~~~----------~~~~~~~~  266 (351)
                      ++.+.... ..-..+..+|++++|.+...       .+.|.++|+.+.         +.+..          ..+..+.|
T Consensus       432 v~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (567)
T 1qks_A          432 LDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF  510 (567)
T ss_dssp             EEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred             EEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence            77776432 23345778999999988663       359999999876         22221          24467899


Q ss_pred             ecCCceeeeeeccc--eeeEEEeeeceeCceEEEeeEEEEecCCcee
Q psy519          267 QPVGFEAATLAANS--RVRTLREMHEIVGPVVVVESFIVEIRPDKWY  311 (351)
Q Consensus       267 s~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  311 (351)
                      +|+|..+.+....+  ....+-++|..+++...........+|.|.|
T Consensus       511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~P~g~f  557 (567)
T 1qks_A          511 NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKF  557 (567)
T ss_dssp             CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred             CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCCcccCCCeee
Confidence            99999876664432  2445666787777644333211133455544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.76  E-value=8.4e-14  Score=116.92  Aligned_cols=253  Identities=8%  Similarity=-0.111  Sum_probs=181.7

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ...+.++++.++  |.++++...++.|.+|+....     ...+...+..+++.++|.+ ++...++.|..+|.. ++..
T Consensus        19 ~~~p~~i~~d~~--g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           19 DSGPYGITSSED--GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TCCEEEEEECTT--SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeeECCC--CCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            457789999999  998888777889999998733     2233467899999999988 555557889999988 5543


Q ss_pred             E-EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           85 R-IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      . ........+.++++.++++++++...++.|..+|.. ++.... +......+.++++++++++.++...   ++.|..
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~i~~  171 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ---NNSIGR  171 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT---TTEEEE
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC---CCeEEE
Confidence            2 222234678999999999888877768899999987 554432 3334567899999999996666554   678999


Q ss_pred             EEccCCceeEE-eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          163 WSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       163 ~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      ||. +++.... .......+..+++++++++.++....+.|..||. +++............+.+++++++|++.++...
T Consensus       172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            998 5554432 2233456889999999988777777788999998 555443221123457899999999997777666


Q ss_pred             CCeEEEEeCCCCceeee------eecceeEEecCCcee
Q psy519          242 TGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       242 dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~  273 (351)
                      ++.|..|+. +++....      ..+..+++.++|...
T Consensus       250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEE
T ss_pred             CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEE
Confidence            799999998 4443321      234456777777643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.76  E-value=9.6e-16  Score=127.25  Aligned_cols=208  Identities=15%  Similarity=0.077  Sum_probs=165.8

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCc-cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeEEE
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHD-MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK-QDVTCA   97 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~-~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~~i   97 (351)
                      +++|++++.++.|.+||..++     +..+. ..+.++.++|+|+++. +.++.|..||. +++.+..+..+. ..+.++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            688999999999999999666     33333 4688999999999855 56888999999 899998887653 578889


Q ss_pred             EEeCCCCEEEEEeC-CCcEEEEeCCCCceeEEecc------CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce
Q psy519           98 RFHPKITYIGTGSY-DKAVRLWSITDGASVRVFSD------HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS  170 (351)
Q Consensus        98 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~  170 (351)
                      .+.++|+.+++.+. ++.+..+|. +++.+..+..      +......+++.++|+++++...   ++.|..||.. ++.
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---~~~v~~~d~~-G~~  157 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---TSEVREIAPN-GQL  157 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---TTEEEEECTT-SCE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---CCEEEEECCC-CCE
Confidence            99999999999887 788888885 6777666541      1123455678999999999887   9999999987 998


Q ss_pred             eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----CCEEEEEEcCCCCEEEEEe
Q psy519          171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----EPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       171 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~  240 (351)
                      +..+... ..+..+...++|++++++..++.|..+|..+++.+.++.....     ..+..+...++|.++++..
T Consensus       158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8888654 3455677889999999998888999999999999888753211     2378888899999888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=1.2e-15  Score=130.20  Aligned_cols=234  Identities=10%  Similarity=-0.050  Sum_probs=169.5

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEe
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      ....+++. +  +.++++...++.|.++|..+.    ..........+++++++++ ++...++.|.+||+++++....+
T Consensus        45 ~~~~i~~~-~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-D--GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEE-T--TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEE-C--CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            34567774 3  456666667889999999876    1123466889999888877 55448999999999999887766


Q ss_pred             eCCC-----CCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC---
Q psy519           88 VGHK-----QDVTCARFHPKITYIGTGS--YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD---  157 (351)
Q Consensus        88 ~~~~-----~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d---  157 (351)
                      ....     .....+++ . +..++++.  .++.|.++|+.+++.+..+... .....++++|+|++++++..   +   
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~---~~~~  195 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDG---GYEG  195 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCC---BCTT
T ss_pred             EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECC---CccC
Confidence            5433     13456777 3 44555554  4889999999999888777643 34567999999987666543   3   


Q ss_pred             -------CeEEEEEccCCceeEEeccC-CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEE
Q psy519          158 -------KAVRLWSITDGASVRVFSDH-VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLV  228 (351)
Q Consensus       158 -------~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~  228 (351)
                             +.|.++|..+++....+... ......++++|++++++++..  .|.+||..+++......... ...+..++
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT  273 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence                   68999999988877666432 236789999999999988765  89999998877542111121 35689999


Q ss_pred             EcC-CCCEEEEE----eCCCeEEEEeCCCCceeee
Q psy519          229 WSV-TGETLVTG----SLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       229 ~~~-~~~~l~~~----~~dg~i~i~~~~~~~~~~~  258 (351)
                      ++| ++.+.++.    ..++.|.+||.. ++.+..
T Consensus       274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE  307 (328)
T ss_dssp             ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred             EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence            999 55555665    568999999988 776654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=1.4e-15  Score=131.44  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEeCCCCceeEEeccC------
Q psy519           69 RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY----------DKAVRLWSITDGASVRVFSDH------  132 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~------  132 (351)
                      .|+.|.+||..+++.+..+..+..+  .++|+||++++++++.          ++.|.+||..+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            3789999999999988888766655  8999999999998863          567999999998888776532      


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE-eccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcC
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELT  208 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~  208 (351)
                      ......++++|+|++|+++... .++.|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|+..
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNAS-PATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEES-SSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEECCC-CCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            2345679999999999988641 147899999999988777 5432 1 2224455544 455555566666666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.3e-15  Score=126.09  Aligned_cols=230  Identities=11%  Similarity=-0.029  Sum_probs=159.3

Q ss_pred             ceEEEEECCCCcE-E-EEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           52 TVWSVEACSKGLA-L-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      ...+++++++|.+ + +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|..||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            6788999999988 5 436789999999876543322223335678899999998666655 889999998765433222


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      ......+.+++++|+|+++++...   ++.|.+||..+.............+..++++|+|+++++...++.|.+||...
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             cCCcCCCcceEECCCCCEEEEECC---CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            223367899999999987777655   78999998655543332222334567899999999777777788999999876


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeE
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      ...... .......+..++++++|.++++...++.|.+|+.........     .....++++|+|...++...++.+..
T Consensus       181 ~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          181 NNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK  259 (270)
T ss_dssp             CCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             CceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEE
Confidence            654432 222336789999999998777777789999999876543321     23456888999876555555555444


Q ss_pred             EE
Q psy519          285 LR  286 (351)
Q Consensus       285 ~~  286 (351)
                      ++
T Consensus       260 ~~  261 (270)
T 1rwi_B          260 LT  261 (270)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.75  E-value=2.2e-16  Score=149.50  Aligned_cols=245  Identities=11%  Similarity=0.007  Sum_probs=164.9

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCC-----CceEEEecCCc--cCCCccc--eEEEEECCCCcE-EEEeCCCc---
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQ-----KNLQSRYLPYY--TSGHDMT--VWSVEACSKGLA-LTGSRDTT---   72 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~-----~~i~i~~~~~~--~~~~~~~--i~~~~~~~~~~~-~~~~~d~~---   72 (351)
                      +..+|...+..++||||  |++||.+..+     ..|++||+.++  ...+...  +..++|+|| +. +.++.++.   
T Consensus       157 l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          157 WAKDGATALDAWAASDD--GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEG  233 (741)
T ss_dssp             CC----EEEEEEEECTT--SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred             hccCCCEEEEeEEECCC--CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence            44555557888999999  9999987553     46999999887  2222222  257899999 65 66655443   


Q ss_pred             -----------EEEEeCCCCee--eEEeeC--CCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC--ceeEEec
Q psy519           73 -----------ARLWSLEQMYP--LRIFVG--HKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITDG--ASVRVFS  130 (351)
Q Consensus        73 -----------i~vw~~~~~~~--~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~  130 (351)
                                 |++|++.+++.  ...+..  +...+..+.|+|||++|+..+.++     .|++||+.++  +....+.
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                       89999987652  223332  333588999999999888777543     8999999876  3144454


Q ss_pred             cCCCCeEEEEEccCCCEEEEEecCC-CCCeEEEEEccCC--ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGTGS-YDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~~~-~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      .+........ +|+|+.|+..+... .++.|.+||+.++  +....+..+...+..+.++ ++.++++...++..++|.+
T Consensus       314 ~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          314 PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            4555555553 48898888776521 2456999999875  2333344444556677887 6677888888887777655


Q ss_pred             C-CCcEEEEeeccCCCCEEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCce
Q psy519          208 T-TGRVISRFHLQEHEPVTSLVWSVTGETLVTG----SLTGTVQFYGWPSASK  255 (351)
Q Consensus       208 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~~~~~~~~  255 (351)
                      . ++.....+.......+..+.++|+++.|+..    ...++|++||+.+++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 4666666654445678899999998766532    2347899999988764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=5.8e-15  Score=125.02  Aligned_cols=233  Identities=11%  Similarity=-0.002  Sum_probs=167.1

Q ss_pred             cceEEeeecCCccccEEEE-------ecCCCceEEEecCCc----cC-----CCccceEEEEECCC-CcEEEEeCCCcEE
Q psy519           12 KHFIQNSFKPETVEDVLAN-------LESQKNLQSRYLPYY----TS-----GHDMTVWSVEACSK-GLALTGSRDTTAR   74 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~-------~~~~~~i~i~~~~~~----~~-----~~~~~i~~~~~~~~-~~~~~~~~d~~i~   74 (351)
                      ....+++|+++  +.++++       ...++.|..|+..+.    ..     ++...+.+++++++ |.+..+...+.|.
T Consensus        18 ~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKN--GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTT--SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCccCceECCC--CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            34578999999  988887       567889999997655    11     24567899999999 8875555555899


Q ss_pred             EEeCCCCeeeEE-eeC----CCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEeCCCCceeEEeccCCC
Q psy519           75 LWSLEQMYPLRI-FVG----HKQDVTCARFHPKITYIGTGSYD---------------KAVRLWSITDGASVRVFSDHVS  134 (351)
Q Consensus        75 vw~~~~~~~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~  134 (351)
                      +||.+ ++.... ...    ....+.++++.++++++++...+               +.|..+|.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99988 665433 221    12357899999999887776554               567788765 5543332 2334


Q ss_pred             CeEEEEEc----cCCCEEEEEecCCCCCeEEEEEcc-CCc-----eeEEeccCC-CCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          135 PVLSIAFS----PCGKYLASGGTGSYDKAVRLWSIT-DGA-----SVRVFSDHV-SPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       135 ~i~~~~~~----~~~~~l~~~~~~~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      ....++++    |+++.++++...  ++.|.+||+. +++     ....+..+. ..+..++++++|+++++...++.|.
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            56889999    999776655421  7899999986 443     222333333 5578899999999888877788999


Q ss_pred             EEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC
Q psy519          204 THELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT-GSLTGTVQFYGWPS  252 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~  252 (351)
                      +||..+++....+.. +...+.+++|+|+++.|++ ...++.|..|++..
T Consensus       251 ~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999987776666643 3367899999999995554 45568999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=2.9e-15  Score=124.38  Aligned_cols=209  Identities=12%  Similarity=0.023  Sum_probs=162.1

Q ss_pred             CCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCe
Q psy519           59 CSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK-QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPV  136 (351)
Q Consensus        59 ~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i  136 (351)
                      +|+..+++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++++  +.++.|+.||. +++.+..+... ...+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            345455899999999999999999999998766 4688999999999888  45788999998 89998888764 3578


Q ss_pred             EEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc------CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          137 LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD------HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      .++.+.|+|+++++.+..  ++.+..+|. +++.+..+..      +......+++.++|+++++...++.|..||.. |
T Consensus        80 ~~~~~~~dG~~lv~~~~~--~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGH--PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEEST--TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCC--CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            899999999999886521  456777775 6777766542      11234456788999999999999999999997 9


Q ss_pred             cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-----------cceeEEecCCceeeee
Q psy519          211 RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV-----------YPRCAAQPVGFEAATL  276 (351)
Q Consensus       211 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----------~~~~~~s~~~~~~~~~  276 (351)
                      +.+.++...  ..+.++...++|++++++..+++|..+|..+++.+-...           +..+...++|..+++.
T Consensus       156 ~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          156 QLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            988887643  456678888999999999888899999999888865432           2334555666655544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=1.1e-13  Score=116.12  Aligned_cols=231  Identities=6%  Similarity=-0.052  Sum_probs=168.3

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ...+..++++|+  |.++++...++.|..|+....     .......+..+++.++|.+ ++...++.|.+||. +++..
T Consensus        56 ~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           56 DAKVMCLTISSD--GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TCCEEEEEECTT--SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCceeeEEECCC--CCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            466889999999  998888777888999987644     1224557899999999988 66666889999998 55443


Q ss_pred             EE-eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           85 RI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      .. ...+...+..+++.++++++++...++.|..||. +++.... .......+.+++++++|++.++...   ++.|..
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~  208 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII---GNKIGR  208 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT---TTEEEE
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC---CceEEE
Confidence            22 2234557899999999988877777789999998 6655433 3334566889999999987776655   789999


Q ss_pred             EEccCCceeEE-eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEEEe
Q psy519          163 WSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       163 ~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ||. +++.... ...+...+..++++++|+++++...++.|..||. +++ +..+... +...+.++++ +++.+.++..
T Consensus       209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence            998 6654332 2334567899999999997777667889999998 454 3344322 2357899999 8888776655


Q ss_pred             CCCeEEEEeCCCC
Q psy519          241 LTGTVQFYGWPSA  253 (351)
Q Consensus       241 ~dg~i~i~~~~~~  253 (351)
                       .+.+..++.+++
T Consensus       285 -~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 -CDKIGKLTLIKD  296 (299)
T ss_dssp             -TTEEEEEEEC--
T ss_pred             -CCcEEEEEcCcc
Confidence             577777777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.73  E-value=5.1e-15  Score=140.18  Aligned_cols=272  Identities=10%  Similarity=0.042  Sum_probs=174.9

Q ss_pred             ecCCccccEEEEecCCCc---eEEEecC-----Cc-----------cCCCccceEEEEECCCCcE-EEEeC-C----CcE
Q psy519           19 FKPETVEDVLANLESQKN---LQSRYLP-----YY-----------TSGHDMTVWSVEACSKGLA-LTGSR-D----TTA   73 (351)
Q Consensus        19 ~sp~~~~~~l~~~~~~~~---i~i~~~~-----~~-----------~~~~~~~i~~~~~~~~~~~-~~~~~-d----~~i   73 (351)
                      .+|+  |++++....++.   -.+|...     ..           ..+|...+..++|+|||++ +.+.. +    ..|
T Consensus       114 p~pd--G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i  191 (741)
T 1yr2_A          114 PQRR--GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV  191 (741)
T ss_dssp             CEEE--TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred             CEEE--CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence            3488  888887654432   4445432     22           1223347889999999987 44433 2    369


Q ss_pred             EEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCc--------------EEEEeCCCCce--eEEec--cCCCC
Q psy519           74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKA--------------VRLWSITDGAS--VRVFS--DHVSP  135 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~--~~~~~--~~~~~  135 (351)
                      ++||+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++..  ...+.  .+...
T Consensus       192 ~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          192 KFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            99999999875432 12222357899999 98888876654              89999977652  22232  23345


Q ss_pred             eEEEEEccCCCEEEEEecCC--CCCeEEEEEccCC--ceeEEeccCCCCEEEEEECCCCcEEEEEcC----CCeEEEEEc
Q psy519          136 VLSIAFSPCGKYLASGGTGS--YDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKYLASGGE----DGLVLTHEL  207 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~  207 (351)
                      +..+.|+|||++|+......  ....|++||+.++  +....+..+........ +|+|+.|+..+.    ++.|.+||+
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            88999999999988877511  1348999999877  31445545554455543 488888887765    456999999


Q ss_pred             CCC-cEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeee------eecceeEEecCCceeee-eec
Q psy519          208 TTG-RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP-SASKIGI------GVYPRCAAQPVGFEAAT-LAA  278 (351)
Q Consensus       208 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~------~~~~~~~~s~~~~~~~~-~~~  278 (351)
                      .++ .....+...+...+..+.|+ ++.++++...|+..++|.+. +++....      ..+..+.++|++..++. ..+
T Consensus       349 ~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  427 (741)
T 1yr2_A          349 SGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS  427 (741)
T ss_dssp             SSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred             CCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            875 23344432333456678887 56677888888877776554 3443332      23345778898876554 445


Q ss_pred             cceeeEEEeeeceeCceE
Q psy519          279 NSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       279 ~~~~~~~~~~~~~~g~~~  296 (351)
                      ......+..|+..+|+..
T Consensus       428 ~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          428 FTQPATVLALDPATAKTT  445 (741)
T ss_dssp             TTEEEEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCcEE
Confidence            566778888988777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.71  E-value=4.1e-14  Score=118.96  Aligned_cols=228  Identities=12%  Similarity=0.020  Sum_probs=157.7

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCee
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~   83 (351)
                      ...+..-.-...|+|+. +.++++...++.|..|+....   .......+.+++++++|.++.+. ++.|.+||.++++.
T Consensus         8 ~~~~~~~~Egp~w~~~~-~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVS-NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             ECCCCSBEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEE
T ss_pred             eccCCccccCCeEECCC-CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcE
Confidence            33344445678999961 456666667889999998765   22345678999999999985555 57899999988765


Q ss_pred             eEEeeC----CCCCeEEEEEeCCCCEEEEEeC-----------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           84 LRIFVG----HKQDVTCARFHPKITYIGTGSY-----------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        84 ~~~~~~----~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      ......    ....+..++++|+|+++++...           .+.|+.++.. ++... +.........++|+|+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEE
Confidence            433322    1235788999999997665422           1344444432 33322 32334456889999999977


Q ss_pred             EEEecCCCCCeEEEEEc--cCCce-----eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC
Q psy519          149 ASGGTGSYDKAVRLWSI--TDGAS-----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH  221 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  221 (351)
                      +.+...  ++.|..||+  .++..     ...+......+..++++++|++.++...++.|..||..+++.+..+... .
T Consensus       164 yv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~  240 (297)
T 3g4e_A          164 YYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-V  240 (297)
T ss_dssp             EEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-S
T ss_pred             EEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-C
Confidence            665431  688999997  44542     2222333456789999999988888777889999999889988887643 3


Q ss_pred             CCEEEEEEc-CCCCEEEEEeC
Q psy519          222 EPVTSLVWS-VTGETLVTGSL  241 (351)
Q Consensus       222 ~~v~~~~~~-~~~~~l~~~~~  241 (351)
                      ..+.+++|. |+++.|++++.
T Consensus       241 ~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCceEEEEeCCCCCEEEEEcC
Confidence            578999998 88887766554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=2.4e-13  Score=119.30  Aligned_cols=228  Identities=10%  Similarity=0.049  Sum_probs=157.0

Q ss_pred             cceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeE
Q psy519           51 MTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK--AVRLWSITDGASVR  127 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~  127 (351)
                      .....++|++++.+ ++...++.|++||.++++.......... .. ++|+|+++.|+++..++  .|..++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            46789999999988 6666678999999998876655544333 33 99999999998888766  79999987665443


Q ss_pred             Ee----ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE----eccCCCCE-E-EEEECCC-CcEEEEE
Q psy519          128 VF----SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV----FSDHVSPV-L-SIAFSPC-GKYLASG  196 (351)
Q Consensus       128 ~~----~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l~~~  196 (351)
                      .+    ......+.+++++|++..|+++..   ++.|+.||..++.....    .......- . .++|+|+ +.++++-
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDS---NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECT---TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEEC---CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            43    224466788999996556666655   88999999987653322    21222222 3 8999995 6666666


Q ss_pred             cCCCeEEEEEcCCCcEEEEeeccC--------------CCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeee--
Q psy519          197 GEDGLVLTHELTTGRVISRFHLQE--------------HEPVTSLVWSVTGETLVTGS-LTGTVQFYGWPSASKIGIG--  259 (351)
Q Consensus       197 ~~dg~i~i~d~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~--  259 (351)
                      ..++.|+.|+.... . ..+....              -.....++++++|+++++-. .+++|+.|++.+++.....  
T Consensus       286 ~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             TTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence            77889999997543 2 2221111              13488999999999777877 7899999998777644321  


Q ss_pred             -----------------ecceeEEecCCceeeeeeccceeeEE
Q psy519          260 -----------------VYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       260 -----------------~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                                       ....++++|+|..+++-..+.+++.+
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence                             23356777776655555555554444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.66  E-value=2.1e-14  Score=134.84  Aligned_cols=248  Identities=12%  Similarity=0.049  Sum_probs=167.5

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEec-----CCCceEEEecCCc--cCCCccce--EEEEECCCCcE-EEEeCCC
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLE-----SQKNLQSRYLPYY--TSGHDMTV--WSVEACSKGLA-LTGSRDT   71 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~-----~~~~i~i~~~~~~--~~~~~~~i--~~~~~~~~~~~-~~~~~d~   71 (351)
                      |.-.+..+|...+..++||||  |++||.+.     ....|++||+.++  ...+...+  ..++|+ ||+. +.+..+.
T Consensus       119 D~n~la~~~~~~l~~~~~SpD--g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          119 DPNTLSPDGTTALDQLSFSRD--GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             CGGGGSTTSCCEEEEEEECTT--SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             ehhhccCCCcEEEEEEEECCC--CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecC
Confidence            344556677778899999999  99998543     3357999999887  22232333  567899 9875 6666553


Q ss_pred             -------------cEEEEeCCCCee--eEEee--C-CCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCc-eeEE
Q psy519           72 -------------TARLWSLEQMYP--LRIFV--G-HKQDVTCARFHPKITYIGTGSY----DKAVRLWSITDGA-SVRV  128 (351)
Q Consensus        72 -------------~i~vw~~~~~~~--~~~~~--~-~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~  128 (351)
                                   .|++|++.+.+.  ...+.  . |......+.|+|||++|+....    ...|+++|+.++. ....
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                         399999987642  22332  2 3445778999999998865432    3589999998764 3445


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEec-CCCCCeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcC-CC--eE
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGE-DG--LV  202 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i  202 (351)
                      +..+....... ++++|..|+..+. ....+.|..+|+.++..  ...+..+...+.  .|+++++.|+.... ++  .|
T Consensus       276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence            55555555555 6666666655443 11246899999987654  345555555554  88998888776654 43  68


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcee
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT----GTVQFYGWPSASKI  256 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~~~~~~  256 (351)
                      ++||+. +.....+.......+..+.++++++.++....+    +.++.||+.+++..
T Consensus       353 ~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          353 EQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            899987 445555655555667788888888866655444    89999999887644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=2.7e-12  Score=111.08  Aligned_cols=266  Identities=8%  Similarity=-0.077  Sum_probs=174.7

Q ss_pred             eeecCCccccEEEEecC--CC---ceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEe----------CCCcEEE
Q psy519           17 NSFKPETVEDVLANLES--QK---NLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGS----------RDTTARL   75 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~--~~---~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~----------~d~~i~v   75 (351)
                      +...|+  +.++.+...  ..   .|.++|..+.     ......+  .++++|||++ +.+.          .++.|.+
T Consensus        26 ~~~~~~--~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           26 EAPGAD--GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             ccCCCC--CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            455577  777766553  23   7899998876     2222222  8999999987 4433          3678999


Q ss_pred             EeCCCCeeeEEeeCC-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCC
Q psy519           76 WSLEQMYPLRIFVGH-------KQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        76 w~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~  145 (351)
                      ||..+.+.+..+...       ......++|+|||++|++++.  ++.|.++| .+++.+.. +.. ..   ++.+.|++
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~  176 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGA  176 (373)
T ss_pred             EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCC
Confidence            999998877766432       123458999999999998874  47899999 99988877 542 22   24455655


Q ss_pred             C-EEEEEecCCCCCeEEEEEccCCceeEEec-----cCCCCE-EEEEECCCCcEEEEEcCCCeEEEEEcCCCc--EEEEe
Q psy519          146 K-YLASGGTGSYDKAVRLWSITDGASVRVFS-----DHVSPV-LSIAFSPCGKYLASGGEDGLVLTHELTTGR--VISRF  216 (351)
Q Consensus       146 ~-~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~  216 (351)
                      + .+++.+.   |+.+.++|. +++......     ....++ ....+.+++..++..+..+.+.+.|+....  .+..+
T Consensus       177 ~~~~~~~~~---dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          177 PSTFYLLCA---QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             CceEEEEcC---CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence            4 4444445   999999999 777663322     112222 234566666555544567899999987543  22333


Q ss_pred             eccC---------CCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeee----cceeEEecCCcee
Q psy519          217 HLQE---------HEPVTSLVWSVTGETLVTGSL----------TGTVQFYGWPSASKIGIGV----YPRCAAQPVGFEA  273 (351)
Q Consensus       217 ~~~~---------~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~----~~~~~~s~~~~~~  273 (351)
                      ....         ......+.++|+++.++++..          .+.|.++|..+++.+....    ...++|+|||+.+
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~  332 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD  332 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeE
Confidence            2111         122445789999998877653          3589999999998876633    5679999999944


Q ss_pred             eeeeccceeeEEEeeeceeCceE
Q psy519          274 ATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      ++.+..+ ...+.+++..+++..
T Consensus       333 l~v~~~~-~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          333 LYALSAG-TEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEEcCC-CCeEEEEECCCCCEE
Confidence            3333311 246777777777744

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=3.1e-13  Score=118.60  Aligned_cols=232  Identities=6%  Similarity=-0.009  Sum_probs=160.4

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCC--cEEEEeCCCCeee
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDT--TARLWSLEQMYPL   84 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~--~i~vw~~~~~~~~   84 (351)
                      .....++|+|+  +.++++...++.|+.|+....    ......... ++|++++.. +.+..++  .|.+++..++...
T Consensus       131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECST--TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            46788999999  998888877899999999865    111122233 899999976 6666655  7889988765443


Q ss_pred             EEe----eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE----eccCCCCe-E-EEEEccCCCEEEEEecC
Q psy519           85 RIF----VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV----FSDHVSPV-L-SIAFSPCGKYLASGGTG  154 (351)
Q Consensus        85 ~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~~~~~~~~~~l~~~~~~  154 (351)
                      ..+    ......+.+++++|++..|+.+..++.|+.||..++.....    ..+....- . .++|+|++..|+.+...
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            333    22445678899999555565677788999999987653322    22222222 2 89999965555554331


Q ss_pred             CCCCeEEEEEccCCceeEEeccC---------------CCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeec
Q psy519          155 SYDKAVRLWSITDGASVRVFSDH---------------VSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  218 (351)
                        ++.|+.||....  ...+.++               -.....++++|+|+++++-. .++.|+.|++.++........
T Consensus       288 --~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          288 --LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             --TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred             --CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence              788999997543  2223222               13478999999999888877 889999999877764433211


Q ss_pred             c-------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          219 Q-------------EHEPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       219 ~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      .             .-..+..+++++++.++++-..+++|+.+++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            0             0135899999999888888888889988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=1.4e-12  Score=112.93  Aligned_cols=255  Identities=11%  Similarity=-0.037  Sum_probs=169.6

Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEeccC-------CC
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS----------YDKAVRLWSITDGASVRVFSDH-------VS  134 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~-------~~  134 (351)
                      .|.++|..+++.+..+.....+  .++++||+++++++.          .++.|.+||..+.+.+..+.-.       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8899999999988877654444  899999999998886          3678999999988877765422       12


Q ss_pred             CeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE-eccCCCCEEEEEECCCC-cEEEEEcCCCeEEEEEcCCCcE
Q psy519          135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCG-KYLASGGEDGLVLTHELTTGRV  212 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  212 (351)
                      ....++|+|||++|+++... .++.|.++| .+++.+.. +... .   ++.+.|++ +.+++.+.||.+.++|. +++.
T Consensus       126 ~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CccceEECCCCCEEEEEecC-CCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            34579999999999988641 147899999 99988877 6432 2   24455655 45667778999999999 8776


Q ss_pred             EEEeec----cCCCC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eeee---------------cceeEEecCC
Q psy519          213 ISRFHL----QEHEP-VTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI--GIGV---------------YPRCAAQPVG  270 (351)
Q Consensus       213 ~~~~~~----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~---------------~~~~~~s~~~  270 (351)
                      ......    ....+ .....+.+++..++..+..+.+.+.|+.+....  ....               ...++++|++
T Consensus       199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~  278 (373)
T 2mad_H          199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence            643221    11122 233556676665555557889999999765321  1110               1126788888


Q ss_pred             ceeeeeeccc-------eeeEEEeeeceeCceEE-Ee----eEEEEecCCceeeccEEE-ecCCccccceeeeeeeee
Q psy519          271 FEAATLAANS-------RVRTLREMHEIVGPVVV-VE----SFIVEIRPDKWYEANLIV-LDDDLKECNLETYSQMIP  335 (351)
Q Consensus       271 ~~~~~~~~~~-------~~~~~~~~~~~~g~~~~-~~----~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~  335 (351)
                      ..+.+....+       ....+.+.+..+++... +.    ...+.|+||+.+..-... .++.+..+|.++.+....
T Consensus       279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            8766655422       12345566666655422 11    123689999884322223 478899999998877655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=2.3e-12  Score=108.05  Aligned_cols=228  Identities=6%  Similarity=-0.030  Sum_probs=164.3

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ...+..++++++  +.++++...++.|..++....     .......+.++++.++|.+ ++...++.|..++.+ ++..
T Consensus        61 ~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           61 DAKVMCLIVSSL--GDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TCCEEEEEECTT--SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcceeEEECCC--CCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            356788999999  988887776788999987743     2223467899999999988 655557899999987 5544


Q ss_pred             EE-eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           85 RI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      .. +......+.++++.+++++.++...++.|..+|. +++.... .......+.+++++++|++.++...   .+.|..
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~i~~  213 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM---GNKIGR  213 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT---TTEEEE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC---CCEEEE
Confidence            22 2334567899999999997776666788999998 5554432 2234457889999999987776555   678999


Q ss_pred             EEccCCceeEE-eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEEEe
Q psy519          163 WSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       163 ~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ||. +++.... .......+..++++++|++.++...++.|..||. +++.. .+... ....+.+++++++|++.++..
T Consensus       214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc
Confidence            998 5544332 3334567889999999997777767789999998 45433 33322 335688999999998666654


Q ss_pred             CCCeEEEEeC
Q psy519          241 LTGTVQFYGW  250 (351)
Q Consensus       241 ~dg~i~i~~~  250 (351)
                       . .|..+|.
T Consensus       291 -~-~i~~~~p  298 (300)
T 2qc5_A          291 -C-KIGKLNL  298 (300)
T ss_dssp             -S-EEEEEEE
T ss_pred             -C-ceEEeCC
Confidence             4 7777764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.64  E-value=8.5e-13  Score=112.42  Aligned_cols=218  Identities=14%  Similarity=0.020  Sum_probs=150.1

Q ss_pred             eEEeeecCCcccc-EEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeC
Q psy519           14 FIQNSFKPETVED-VLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG   89 (351)
Q Consensus        14 v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~   89 (351)
                      ....+|+|+  ++ ++++...++.|..|+....   .......+.+++|+++|+++.++.+ .|.+||.++++.......
T Consensus        51 ~egp~~~~~--~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPA--SGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETT--TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCC--CCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeC
Confidence            456899997  54 5556666789999998765   1123467899999999998555544 499999988775433221


Q ss_pred             ----CCCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           90 ----HKQDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        90 ----~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                          ....+..++++|+|+++++...      .+.|..++  +++... +.........++|+|+++.++.+...  ++.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~--~~~  202 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK--VNR  202 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT--TCE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC--CCE
Confidence                1235789999999987665432      24566666  454333 32233456789999999987665431  688


Q ss_pred             EEEEEcc--CC-ce-----eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc-
Q psy519          160 VRLWSIT--DG-AS-----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS-  230 (351)
Q Consensus       160 i~i~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-  230 (351)
                      |.+||+.  ++ ..     ...+......+..+++.++|++.++...++.|..||. +++.+..+.. ....+.+++|+ 
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g  280 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIG  280 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEES
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEEec
Confidence            9999986  55 31     2223223455778999999987777766788999998 6777766653 33569999998 


Q ss_pred             CCCCEEEEEeC
Q psy519          231 VTGETLVTGSL  241 (351)
Q Consensus       231 ~~~~~l~~~~~  241 (351)
                      ++++.|++++.
T Consensus       281 ~d~~~L~vt~~  291 (326)
T 2ghs_A          281 PDASRLLVTSA  291 (326)
T ss_dssp             TTSCEEEEEEB
T ss_pred             CCCCEEEEEec
Confidence            88887755543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=8e-13  Score=111.78  Aligned_cols=221  Identities=9%  Similarity=0.002  Sum_probs=150.4

Q ss_pred             cceEEEEECCCCcE-EE-------EeCCCcEEEEeCCCCeeeEEee----CCCCCeEEEEEeCC-CCEEEEEeCCCcEEE
Q psy519           51 MTVWSVEACSKGLA-LT-------GSRDTTARLWSLEQMYPLRIFV----GHKQDVTCARFHPK-ITYIGTGSYDKAVRL  117 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~-------~~~d~~i~vw~~~~~~~~~~~~----~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i  117 (351)
                      ....+++|++++.+ ++       ...++.|.+||..+++......    ++...+.+++++++ ++++++. ..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            35678999999988 55       4678899999988876543222    24467899999999 6655544 4457999


Q ss_pred             EeCCCCceeEE-ecc----CCCCeEEEEEccCCCEEEEEecCCCC---------------CeEEEEEccCCceeEEeccC
Q psy519          118 WSITDGASVRV-FSD----HVSPVLSIAFSPCGKYLASGGTGSYD---------------KAVRLWSITDGASVRVFSDH  177 (351)
Q Consensus       118 ~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~~~~d---------------~~i~i~d~~~~~~~~~~~~~  177 (351)
                      ||.. ++.... ...    ....+.+++++++|+++++...   +               +.|..||.. ++..... .+
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~  170 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA---GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA  170 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB---CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecC---cccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence            9988 665433 221    1235789999999988777654   3               567777765 5443322 33


Q ss_pred             CCCEEEEEEC----CCCcEEEEE-cCCCeEEEEEcC-CCcEEE--Ee-eccCC--CCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          178 VSPVLSIAFS----PCGKYLASG-GEDGLVLTHELT-TGRVIS--RF-HLQEH--EPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       178 ~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~--~~-~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      ......++|+    |+++.++++ ..++.|.+||+. +++...  .+ .....  ..+..++++++|+++++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            3456889999    999765554 567899999986 443211  11 11111  4578999999999888887889999


Q ss_pred             EEeCCCCceeee-----eecceeEEecCCceeeeeec
Q psy519          247 FYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       247 i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~  278 (351)
                      +||..+++.+..     ..+..++++|++..+.++..
T Consensus       251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            999886665433     23456788899885554443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.62  E-value=1.7e-13  Score=117.36  Aligned_cols=243  Identities=11%  Similarity=0.050  Sum_probs=164.8

Q ss_pred             EeeecCCccccEEEEec----------CCCceEEEecCCc-----cC-CC------ccceEEEEECCCCcE-EEEeC--C
Q psy519           16 QNSFKPETVEDVLANLE----------SQKNLQSRYLPYY-----TS-GH------DMTVWSVEACSKGLA-LTGSR--D   70 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~----------~~~~i~i~~~~~~-----~~-~~------~~~i~~~~~~~~~~~-~~~~~--d   70 (351)
                      .+++||+  |++|+++.          .++.|.+||..+.     .. +.      ......++|+|||++ +.+..  +
T Consensus        82 ~va~spD--G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           82 NPVVADD--GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             cEEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            3999999  99887765          3578999999887     10 10      123456899999987 44443  6


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEeccC----CCCeE-EEEEc-c
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-GASVRVFSDH----VSPVL-SIAFS-P  143 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~  143 (351)
                      +.|.|+|+.+++.+.++....  . ...+....+.+++.+.||.+.+.++.+ ++........    ..++. ..+|. +
T Consensus       160 ~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  236 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence            899999999999988885432  1 222333445667778888888888876 5542211111    12222 23564 5


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCc--eeEEec---c-------CCCCEEEEEECCCCcEEEEEcC----------CCe
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGA--SVRVFS---D-------HVSPVLSIAFSPCGKYLASGGE----------DGL  201 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~---~-------~~~~i~~~~~~~~~~~l~~~~~----------dg~  201 (351)
                      +|++++ .+.   ++.+++.|+.++.  ....+.   .       .......++++|+++.+++...          .+.
T Consensus       237 dG~~~~-vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~  312 (386)
T 3sjl_D          237 AGRLVW-PTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  312 (386)
T ss_dssp             TTEEEE-EBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             CCcEEE-EeC---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence            776555 445   7999999987654  222221   0       1122334777999988887643          257


Q ss_pred             EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeee----ecceeEEecC
Q psy519          202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE-TLVTGS-LTGTVQFYGWPSASKIGIG----VYPRCAAQPV  269 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~~~~~~~~~~~~----~~~~~~~s~~  269 (351)
                      |.++|+.+++.+..+...  ..+.++.+++|++ +|+++. .++.|.++|..+++.++..    ..+.+.+++|
T Consensus       313 V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          313 VVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            999999999999998764  3688999999997 666654 4899999999999988763    3345677665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=6.6e-13  Score=113.72  Aligned_cols=268  Identities=9%  Similarity=-0.003  Sum_probs=177.9

Q ss_pred             EeeecCCccccEEEEecC-----CCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEe----------CCCcEE
Q psy519           16 QNSFKPETVEDVLANLES-----QKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGS----------RDTTAR   74 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~-----~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~----------~d~~i~   74 (351)
                      .....|+  +..+.+...     ++.|.+.|..+.     ......+ . ++++|+|+. +++.          .++.|.
T Consensus        37 ~~~~~pd--~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           37 LEAPAPD--ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCC--TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeccCCC--CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            4566788  887776654     578999999877     2222223 4 999999976 3433          367899


Q ss_pred             EEeCCCCeeeEEeeCCC-------CCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCC
Q psy519           75 LWSLEQMYPLRIFVGHK-------QDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  145 (351)
                      +||..+++.+..+.-..       .....++++|||++++++..  ++.|.++|+.+++.+..+.-. + . ...+....
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~  189 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAP  189 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEET
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCC
Confidence            99999999888774321       24567899999999988864  689999999999998888532 2 1 22333344


Q ss_pred             CEEEEEecCCCCCeEEEEEccC-CceeEEeccC----CCCEE-EEEEC-CCCcEEEEEcCCCeEEEEEcCCCc--EEEEe
Q psy519          146 KYLASGGTGSYDKAVRLWSITD-GASVRVFSDH----VSPVL-SIAFS-PCGKYLASGGEDGLVLTHELTTGR--VISRF  216 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~  216 (351)
                      +.+++.+.   ||.+.+.++.. ++.......+    ..++. ...|. ++|++++ .+.+|.+++.|+.+..  ....+
T Consensus       190 ~~~~~~~~---DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          190 DTFFMHCR---DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             TEEEEEET---TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCE
T ss_pred             ceeEEECC---CCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecce
Confidence            56666666   88888888876 5543222111    12222 23553 6776655 4557999999997654  33333


Q ss_pred             ec-c--------CCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeee----eecceeEEecCCc-e
Q psy519          217 HL-Q--------EHEPVTSLVWSVTGETLVTGSL----------TGTVQFYGWPSASKIGI----GVYPRCAAQPVGF-E  272 (351)
Q Consensus       217 ~~-~--------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~-~  272 (351)
                      .. .        .......++++++++.++....          .++|.++|+.+++.+..    .....++++||++ .
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~  345 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL  345 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCE
T ss_pred             eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeE
Confidence            20 0        0123445778999998887643          25799999999998876    3456899999997 4


Q ss_pred             eeeeeccceeeEEEeeeceeCceE
Q psy519          273 AATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +.+...  ....+.++|..+++..
T Consensus       346 ly~tn~--~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          346 LYALST--GDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEEET--TTTEEEEEETTTCCEE
T ss_pred             EEEEcC--CCCeEEEEECCCCcEE
Confidence            444332  1234566777777644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=4.5e-12  Score=106.44  Aligned_cols=222  Identities=12%  Similarity=0.018  Sum_probs=148.9

Q ss_pred             ceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           52 TVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        52 ~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      -..+..|+++ +.+ ++...++.|..||..+++.. .+. ....+.+++++++++++++ . +..|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            3457888885 445 67777899999999887653 332 4567899999999995554 4 567999999887654332


Q ss_pred             cc----CCCCeEEEEEccCCCEEEEEecC--------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEE-EE
Q psy519          130 SD----HVSPVLSIAFSPCGKYLASGGTG--------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SG  196 (351)
Q Consensus       130 ~~----~~~~i~~~~~~~~~~~l~~~~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~  196 (351)
                      ..    ....+..++++|+|+++++....        ...+.|..+|.. ++.. .+.........++|+||++.|+ +.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCEEEEec
Confidence            21    12357889999999976654320        012344444432 3332 2323334567899999998665 55


Q ss_pred             cCCCeEEEEEc--CCCcEE--EEe-ec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----ecceeE
Q psy519          197 GEDGLVLTHEL--TTGRVI--SRF-HL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG-----VYPRCA  265 (351)
Q Consensus       197 ~~dg~i~i~d~--~~~~~~--~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~  265 (351)
                      +.++.|..||+  .++...  ..+ .. .....+..++++++|++.++....+.|..||..+++.+...     .+.+++
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence            56789999987  455432  111 11 12246789999999998888877889999999988876553     345688


Q ss_pred             Ee-cCCceeeeeecc
Q psy519          266 AQ-PVGFEAATLAAN  279 (351)
Q Consensus       266 ~s-~~~~~~~~~~~~  279 (351)
                      |. |++..|.+.+..
T Consensus       248 f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          248 FGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EESGGGCEEEEEEBC
T ss_pred             EeCCCCCEEEEEcCC
Confidence            88 888776555543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.60  E-value=7.5e-13  Score=111.68  Aligned_cols=217  Identities=10%  Similarity=-0.015  Sum_probs=152.0

Q ss_pred             cceEEeeecCCcccc-EEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEe-CCCcEEEEeCCCCeeeEE
Q psy519           12 KHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGS-RDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~-~d~~i~vw~~~~~~~~~~   86 (351)
                      ......+|+|+  ++ ++++...++.|..|+....   +..+...+..++++++|+++++. .++.|.+|+.+ ++.. .
T Consensus        45 ~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~-~  120 (305)
T 3dr2_A           45 TWSEGPAWWEA--QRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH-L  120 (305)
T ss_dssp             SSEEEEEEEGG--GTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred             cCccCCeEeCC--CCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE-E
Confidence            34567899999  88 5667777889999988543   33455678999999999985555 45789999986 5432 2


Q ss_pred             eeCC-----CCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccC
Q psy519           87 FVGH-----KQDVTCARFHPKITYIGT----GSY-------------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  144 (351)
Q Consensus        87 ~~~~-----~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  144 (351)
                      +..+     ...+..+++.|+|++.++    |..             .+.|+.+|..+++.....  .......++|+|+
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd  198 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD  198 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence            2211     134667999999998876    332             256888887666654433  3355688999999


Q ss_pred             CCEEEEEecCCCC------CeEEEEEccCCceeE---Ee-ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEE
Q psy519          145 GKYLASGGTGSYD------KAVRLWSITDGASVR---VF-SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVIS  214 (351)
Q Consensus       145 ~~~l~~~~~~~~d------~~i~i~d~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  214 (351)
                      ++.|+++..   .      +.|..||+..+. +.   .+ .........++++++|++. +++.+ .|.+|+. +++.+.
T Consensus       199 g~~lyv~~~---~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          199 EQTLYVSQT---PEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLG  271 (305)
T ss_dssp             SSEEEEEEC---CC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEE
T ss_pred             CCEEEEEec---CCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEE
Confidence            998888765   4      689999987653 21   11 1123345578999999944 44444 4999998 577777


Q ss_pred             EeeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy519          215 RFHLQEHEPVTSLVWSVTGETLVTGSLTG  243 (351)
Q Consensus       215 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  243 (351)
                      .+....  .+..++|+++++.|..++.++
T Consensus       272 ~~~~~~--~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          272 HIPTPG--TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEECSS--CCCEEEECTTSCEEEEEETTE
T ss_pred             EEECCC--ceeEEEEeCCCCEEEEEcCCe
Confidence            775433  588999999999888887654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=7.4e-14  Score=120.07  Aligned_cols=170  Identities=12%  Similarity=0.051  Sum_probs=131.0

Q ss_pred             ceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe-----------eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy519           52 TVWSVEACSKGLA-LTGSRDTTARLWSLEQMY-----------PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS  119 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  119 (351)
                      +++.+++++...+ ++|+.+ .+.+|++++.+           ..... .+.. |+.++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            6888999988877 666665 66669865432           11222 3555 999999  88999998 789999999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC
Q psy519          120 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  199 (351)
                      +++.........+..++.++.+.+.  .++++..   ||.|.+||+.++....    +...|++++|+|+|  ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~---dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEEC---CCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            9887766666667788888877654  3777777   9999999999877643    34579999999999  6788899


Q ss_pred             CeEEEEEcCCCcE--EEEeec--------cCCCCEEEEEEcCCCCEEEE
Q psy519          200 GLVLTHELTTGRV--ISRFHL--------QEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       200 g~i~i~d~~~~~~--~~~~~~--------~~~~~v~~~~~~~~~~~l~~  238 (351)
                      |.+++|+...++.  ...+..        .+...|.++.|.+++.++++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999999877664  444411        24578999999999998887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.58  E-value=1e-12  Score=114.59  Aligned_cols=270  Identities=13%  Similarity=0.027  Sum_probs=180.8

Q ss_pred             CCCcE--EEEeCC----CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCC
Q psy519           60 SKGLA--LTGSRD----TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS----------YDKAVRLWSITDG  123 (351)
Q Consensus        60 ~~~~~--~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~  123 (351)
                      +++..  ++...+    +.|.++|..+++.+..+.....+  .++++||++.++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            34443  554444    79999999999999888765555  899999999888876          3678999999999


Q ss_pred             ceeEEeccC-------CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCC-cEEEE
Q psy519          124 ASVRVFSDH-------VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG-KYLAS  195 (351)
Q Consensus       124 ~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~  195 (351)
                      +.+..+.-.       ......++++|||++++++.. ..++.|.+.|+.+++.+..+.....    ....|++ ..+++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~  234 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYM  234 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEE
Confidence            988776421       123457899999999999864 1157899999999998888764221    2233433 45566


Q ss_pred             EcCCCeEEEEEcCCCcEEEE----eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------------
Q psy519          196 GGEDGLVLTHELTTGRVISR----FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------------  258 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------------  258 (351)
                      .+.||.+.+.+..+++....    +..........+.|.+++..++..+..+.+.+.|.........             
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD  314 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence            66777777777755544422    1111111123457889988887778889999999876542211             


Q ss_pred             ----eecceeEEecCCceeeeeeccc-------eeeEEEeeeceeCceEEEe-----eEEEEecCCce-eeccEEEecCC
Q psy519          259 ----GVYPRCAAQPVGFEAATLAANS-------RVRTLREMHEIVGPVVVVE-----SFIVEIRPDKW-YEANLIVLDDD  321 (351)
Q Consensus       259 ----~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~  321 (351)
                          .....++++|++..+.+....+       ....+.+.|..+.+...-.     ...+.|+||+. +....-..++.
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence                1122378999988766655321       2345666676665543222     12368999988 44433224788


Q ss_pred             ccccceeeeeeeeec
Q psy519          322 LKECNLETYSQMIPV  336 (351)
Q Consensus       322 i~~~~~~~~~~~~~~  336 (351)
                      +..+|++++.....+
T Consensus       395 VsVID~~t~kvv~tI  409 (426)
T 3c75_H          395 LHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEe
Confidence            999999998777664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.57  E-value=1.9e-12  Score=121.58  Aligned_cols=255  Identities=11%  Similarity=0.053  Sum_probs=163.6

Q ss_pred             EEecCCccCCCccceEEEEECCCCcE-E-EEe----CCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy519           39 SRYLPYYTSGHDMTVWSVEACSKGLA-L-TGS----RDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD  112 (351)
Q Consensus        39 i~~~~~~~~~~~~~i~~~~~~~~~~~-~-~~~----~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  112 (351)
                      +.|.+....+|...+..++|+|||++ + +.+    ....|++||+++++.+... .+......++|+ |++.|+.++.+
T Consensus       117 llD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          117 FLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEec
Confidence            44554444556678999999999987 3 222    2357999999999865431 111113567899 99999888877


Q ss_pred             C-------------cEEEEeCCCCce--eEEec--c-CCCCeEEEEEccCCCEEEEEec-CCCCCeEEEEEccCCc-eeE
Q psy519          113 K-------------AVRLWSITDGAS--VRVFS--D-HVSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWSITDGA-SVR  172 (351)
Q Consensus       113 g-------------~i~i~d~~~~~~--~~~~~--~-~~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d~~~~~-~~~  172 (351)
                      .             .|++|++.++..  ...+.  . +......+.|+|||++|+.... ...+..|+++|+.++. ...
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence            4             399999987653  22332  2 3445788999999998866543 1123589999998764 445


Q ss_pred             EeccCCCCEEEEEECCCCcEEEE-EcC---CCeEEEEEcCCCcE--EEEeeccCCCCEEEEEEcCCCCEEEEEeCC-C--
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLAS-GGE---DGLVLTHELTTGRV--ISRFHLQEHEPVTSLVWSVTGETLVTGSLT-G--  243 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--  243 (351)
                      .+..+....... ++++|..|+. ...   .+.|..+|+.++..  ...+. .+...+.  .|+++++.|+....+ +  
T Consensus       275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred             EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCee
Confidence            555555555554 5666665554 433   36799999987653  23333 3343444  888999988776654 3  


Q ss_pred             eEEEEeCCCCceeee-----eecceeEEecCCceeeeeecc-ceeeEEEeeeceeCceEEEe
Q psy519          244 TVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAAN-SRVRTLREMHEIVGPVVVVE  299 (351)
Q Consensus       244 ~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~  299 (351)
                      .|++|++..+.....     ..+..+.++|++..+....++ ..-..+..++..+++...+.
T Consensus       351 ~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          351 RVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR  412 (693)
T ss_dssp             EEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence            789999886543322     123345667888776655443 34456777777777644443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=7e-13  Score=113.81  Aligned_cols=232  Identities=9%  Similarity=-0.010  Sum_probs=157.5

Q ss_pred             cceEEeeecCCccccEEEEec--CCCceEEEecCCc-----------cCCCccceEEEEECCCCcE-EEEeC-----CCc
Q psy519           12 KHFIQNSFKPETVEDVLANLE--SQKNLQSRYLPYY-----------TSGHDMTVWSVEACSKGLA-LTGSR-----DTT   72 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~--~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~~~~-~~~~~-----d~~   72 (351)
                      ..+..++++|+  |+++++..  .++.++||.+...           ...+...+..+++++++++ ++-..     +..
T Consensus        17 ~~p~~va~~~~--g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPD--GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTT--SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCC--CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            56788999999  99988853  2343556655422           1234568999999999988 44332     578


Q ss_pred             EEEEeCCCCeeeEEeeCC------CCCeEEEEEeCCCCEE-EEEe---CCCcEEEEeCCCCceeEEeccCC---------
Q psy519           73 ARLWSLEQMYPLRIFVGH------KQDVTCARFHPKITYI-GTGS---YDKAVRLWSITDGASVRVFSDHV---------  133 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~---------  133 (351)
                      |.+||+.+++.+..+..+      ...+..+++++++..+ ++..   .++.|.+||+.+++..+.+..|.         
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999999877666432      2346889999865454 4444   57899999998887666553311         


Q ss_pred             --------------------CCeEEEEEccCCCEEEEEecCCCCC-eEEEEEcc---CCc--------eeEEeccCCCCE
Q psy519          134 --------------------SPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSIT---DGA--------SVRVFSDHVSPV  181 (351)
Q Consensus       134 --------------------~~i~~~~~~~~~~~l~~~~~~~~d~-~i~i~d~~---~~~--------~~~~~~~~~~~i  181 (351)
                                          ..+..++|+|+++.|+++..   .+ .+..++..   .+.        .+... ++....
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~p  250 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM---HSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPIC  250 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES---SCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSC
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC---CCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCC
Confidence                                23688999999998888766   44 56555532   111        01111 223345


Q ss_pred             EEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       182 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      ..++++++|.++++...++.|.+||..+++............+.+++|.++++++++.+..+.+.+|.
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            67899999999999999999999998566543333222235689999999998888877655554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=1.3e-13  Score=118.58  Aligned_cols=168  Identities=13%  Similarity=0.061  Sum_probs=132.1

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---------------cCCCccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------------TSGHDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      .++..+++++.  ..++++|+.++ +.+|++...               ...+.. |+.++|  ++.+ +++ .++.|++
T Consensus        38 ~~~nlLais~~--~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNS--KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETT--TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             ccccEEEEcCC--CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            46889999999  99999998875 666985432               223455 999999  7777 555 8899999


Q ss_pred             EeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        76 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      ||+.+.........|..++.++.+.+.  .+++++.||.+.+||+.++....    +...|+|++|+|+|  ++.|..  
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~--  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK--  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET--
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc--
Confidence            999877666666677888888887754  38888999999999999877643    34689999999999  566777  


Q ss_pred             CCCeEEEEEccCCce--eEEe------c---cCCCCEEEEEECCCCcEEEEEc
Q psy519          156 YDKAVRLWSITDGAS--VRVF------S---DHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                       ||.+++|+...++.  ...+      .   +|...|.++.|.+++.++++-.
T Consensus       181 -dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          181 -DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             -TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             -CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence             99999999877764  4455      2   3678899999999999888643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.55  E-value=4.1e-12  Score=110.76  Aligned_cols=227  Identities=12%  Similarity=0.021  Sum_probs=152.3

Q ss_pred             ccEEEEecC-C----CceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEe----------CCCcEEEEeCCCCee
Q psy519           25 EDVLANLES-Q----KNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGS----------RDTTARLWSLEQMYP   83 (351)
Q Consensus        25 ~~~l~~~~~-~----~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~----------~d~~i~vw~~~~~~~   83 (351)
                      ++++.+... +    +.|.++|..+.     ...-..+  .++++|||+. +++.          .++.|.++|..+++.
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            565554433 2    68999999887     2212233  7999999976 4433          467899999999998


Q ss_pred             eEEeeCC-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCC-------CeEEEEEccCCCE
Q psy519           84 LRIFVGH-------KQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVS-------PVLSIAFSPCGKY  147 (351)
Q Consensus        84 ~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~  147 (351)
                      +..+.-.       ......+.++|||++++++..  ++.|.+.|+.+++.+..+.-...       .-.-+.++++|++
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~  241 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSL  241 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSE
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCE
Confidence            8776422       123457899999999998874  57899999999988776643110       0011334444443


Q ss_pred             E-------------------------------------EEEecCCCCCeEEEEEccCCceeE--Eecc----------CC
Q psy519          148 L-------------------------------------ASGGTGSYDKAVRLWSITDGASVR--VFSD----------HV  178 (351)
Q Consensus       148 l-------------------------------------~~~~~~~~d~~i~i~d~~~~~~~~--~~~~----------~~  178 (351)
                      +                                     +....   .+.+.+.|+.......  .+..          ..
T Consensus       242 ~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          242 ARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             EEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             EEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            3                                     33323   4455666654332110  0000          00


Q ss_pred             CCEEEEEECCCCcEEEEEcC----------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC-EEEEEe-CCCeEE
Q psy519          179 SPVLSIAFSPCGKYLASGGE----------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE-TLVTGS-LTGTVQ  246 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~  246 (351)
                      .....++++|+++.+++...          ++.|.++|+.+.+.+.++....  ....+.|+|||+ ++++.. .++.|.
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEE
Confidence            11123688999887777642          3579999999999999886533  589999999999 888888 489999


Q ss_pred             EEeCCCCceeee
Q psy519          247 FYGWPSASKIGI  258 (351)
Q Consensus       247 i~~~~~~~~~~~  258 (351)
                      ++|+.+++.++.
T Consensus       397 VID~~t~kvv~t  408 (426)
T 3c75_H          397 IYDAATGEELRS  408 (426)
T ss_dssp             EEETTTCCEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999998866

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.54  E-value=3.8e-11  Score=103.67  Aligned_cols=217  Identities=9%  Similarity=0.046  Sum_probs=150.0

Q ss_pred             CCCcE--EEEeCCCcEEEEeCCCC----eeeEEee-------CCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeC
Q psy519           60 SKGLA--LTGSRDTTARLWSLEQM----YPLRIFV-------GHKQDVTCARFHPKITYIGTGSYD------KAVRLWSI  120 (351)
Q Consensus        60 ~~~~~--~~~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~  120 (351)
                      +++++  +.+..++.|+|+|+.+.    +...++.       ........+...|+| .++++..+      |.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            66765  77788999999999755    5555552       011244567888999 66665544      78999999


Q ss_pred             CCCceeEEeccCCC---CeEEEEEccCCCEEEEEecC----------------CCCCeEEEEEccCCceeEEeccCC--C
Q psy519          121 TDGASVRVFSDHVS---PVLSIAFSPCGKYLASGGTG----------------SYDKAVRLWSITDGASVRVFSDHV--S  179 (351)
Q Consensus       121 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~~----------------~~d~~i~i~d~~~~~~~~~~~~~~--~  179 (351)
                      .+++.+..+.....   .-+.+-|+|+++.+++..-+                .....|.+||+.+++.+.++....  .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99999888863222   23458889999998887411                126899999999988777776431  2


Q ss_pred             CEEEEEE--CCCCcEEEEEcC------CCeEEEEEcCCCcEE--EEeeccC-----------------CCCEEEEEEcCC
Q psy519          180 PVLSIAF--SPCGKYLASGGE------DGLVLTHELTTGRVI--SRFHLQE-----------------HEPVTSLVWSVT  232 (351)
Q Consensus       180 ~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~--~~~~~~~-----------------~~~v~~~~~~~~  232 (351)
                      ....+.|  +|++++++++++      ++.|.+|....++..  +.+....                 ......+.+++|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3445555  999999888774      567877766544311  1111111                 234788999999


Q ss_pred             CCEEEEEeC-CCeEEEEeCCCC---ceeee---e----------------ecceeEEecCCceeeeee
Q psy519          233 GETLVTGSL-TGTVQFYGWPSA---SKIGI---G----------------VYPRCAAQPVGFEAATLA  277 (351)
Q Consensus       233 ~~~l~~~~~-dg~i~i~~~~~~---~~~~~---~----------------~~~~~~~s~~~~~~~~~~  277 (351)
                      |++|.++.. .+.|.+||+...   +.+..   .                ....+.++|||+++.++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999988776 689999998632   33322   2                135689999999988777

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=8.3e-12  Score=105.26  Aligned_cols=222  Identities=9%  Similarity=-0.006  Sum_probs=149.2

Q ss_pred             ccceEEEEECCCCc-E-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           50 DMTVWSVEACSKGL-A-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        50 ~~~i~~~~~~~~~~-~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      ........|+++++ + ++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+.. ++...
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            34566889999987 4 77778899999998 444 34455566778999999999977666566889999986 55332


Q ss_pred             Eecc----CCCCeEEEEEccCCCEEEE----EecC----------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCC
Q psy519          128 VFSD----HVSPVLSIAFSPCGKYLAS----GGTG----------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC  189 (351)
Q Consensus       128 ~~~~----~~~~i~~~~~~~~~~~l~~----~~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  189 (351)
                      ....    ....+..++++|+|++.++    +...          ...+.|..||..+++.....  .......++|+||
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd  198 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD  198 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence            2211    1134667999999998886    3210          00256888887666544333  3345678999999


Q ss_pred             CcEEEEEcCC------CeEEEEEcCCCcEE--EEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee--
Q psy519          190 GKYLASGGED------GLVLTHELTTGRVI--SRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG--  259 (351)
Q Consensus       190 ~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--  259 (351)
                      ++.|+.+...      +.|.+|++..+...  ..+.......+..++++++|++.++ +.+ .|.+|+.. ++.+...  
T Consensus       199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g~~~~~~~~  275 (305)
T 3dr2_A          199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-GQLLGHIPT  275 (305)
T ss_dssp             SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-SCEEEEEEC
T ss_pred             CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-CCEEEEEEC
Confidence            9988777654      68999998765411  1111112344567899999995444 444 59999974 5544432  


Q ss_pred             --ecceeEEecCCceeeeeecc
Q psy519          260 --VYPRCAAQPVGFEAATLAAN  279 (351)
Q Consensus       260 --~~~~~~~s~~~~~~~~~~~~  279 (351)
                        .+..++|+|++..+...+.+
T Consensus       276 ~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          276 PGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             SSCCCEEEECTTSCEEEEEETT
T ss_pred             CCceeEEEEeCCCCEEEEEcCC
Confidence              35678888888877766654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.53  E-value=4.8e-11  Score=101.53  Aligned_cols=219  Identities=13%  Similarity=-0.047  Sum_probs=144.1

Q ss_pred             eEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec
Q psy519           53 VWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        53 i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  130 (351)
                      ..++.|+|++ .+ ++...++.|..||.++++.. .+. ....+.+++++|+++++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            4567899974 44 67777899999999887643 333 34679999999999877654 34 49999998877543322


Q ss_pred             c----CCCCeEEEEEccCCCEEEEEecC---CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEE-cCCCeE
Q psy519          131 D----HVSPVLSIAFSPCGKYLASGGTG---SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG-GEDGLV  202 (351)
Q Consensus       131 ~----~~~~i~~~~~~~~~~~l~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  202 (351)
                      .    ....+.+++++|+|+++++....   ...+.|..+|  +++.. .+.........++|+||++.++.+ +.++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1    12357899999999976654320   0024566666  44433 332333456789999999876554 557899


Q ss_pred             EEEEcC--CC-cEE--EEe-ec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----ecceeEEe-cC
Q psy519          203 LTHELT--TG-RVI--SRF-HL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG-----VYPRCAAQ-PV  269 (351)
Q Consensus       203 ~i~d~~--~~-~~~--~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~s-~~  269 (351)
                      .+||+.  ++ ...  ..+ .. .....+..++++++|.+.++...++.|..|+. +++.+...     .+..++|+ |+
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            999985  55 311  111 11 12345788999999998877767789999998 45554432     34567777 77


Q ss_pred             Cceeeeeecc
Q psy519          270 GFEAATLAAN  279 (351)
Q Consensus       270 ~~~~~~~~~~  279 (351)
                      +..+.+....
T Consensus       283 ~~~L~vt~~~  292 (326)
T 2ghs_A          283 ASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEEBC
T ss_pred             CCEEEEEecC
Confidence            7665544433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=4.3e-11  Score=111.89  Aligned_cols=248  Identities=10%  Similarity=0.055  Sum_probs=165.7

Q ss_pred             ccEEEEecCCCceEEEecCCc-----c-CC-CccceEEEEECC---CCcEEEEe------CCCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----T-SG-HDMTVWSVEACS---KGLALTGS------RDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~-~~-~~~~i~~~~~~~---~~~~~~~~------~d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..|++++.++.+..+|..++     . .. +......+..+|   ++.++.+.      .++.|+.||.++|+.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            567788888999999998776     1 11 111101111122   55664443      36899999999999887765


Q ss_pred             CCC-------------------------------CCeEEEEEeCCCCEEEEEeCCCc-------------------EEEE
Q psy519           89 GHK-------------------------------QDVTCARFHPKITYIGTGSYDKA-------------------VRLW  118 (351)
Q Consensus        89 ~~~-------------------------------~~i~~i~~~~~~~~l~~~~~dg~-------------------i~i~  118 (351)
                      ...                               ..-..+++.|+...++.+..++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210                               00125788898889998887763                   9999


Q ss_pred             eCCCCceeEEecc--CC-------CCeEEEEEccCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCCC-------
Q psy519          119 SITDGASVRVFSD--HV-------SPVLSIAFSPCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHVS-------  179 (351)
Q Consensus       119 d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------  179 (351)
                      |.++|+.+..++.  |.       .+........+|+   .++.++.   +|.++++|.++|+.+...+....       
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK---NGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT---TSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC---CCeEEEEECCCCCEeccccccccccccccC
Confidence            9999998887753  21       1222222233564   6777777   99999999999988744321110       


Q ss_pred             --------------------------------CEEEEEECCCCcEEEEEcC-----------------------------
Q psy519          180 --------------------------------PVLSIAFSPCGKYLASGGE-----------------------------  198 (351)
Q Consensus       180 --------------------------------~i~~~~~~~~~~~l~~~~~-----------------------------  198 (351)
                                                      .-..++++|+..++++...                             
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                                            0112678888777776522                             


Q ss_pred             ----------------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-
Q psy519          199 ----------------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY-  261 (351)
Q Consensus       199 ----------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-  261 (351)
                                      +|.|..||+.+++.+-.+..  ..+...-.+...+.+++.++.||.++.||.++++.+-.... 
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                            37799999999998877653  23334445666788999999999999999999998865332 


Q ss_pred             -----ceeEEecCCceeeeee
Q psy519          262 -----PRCAAQPVGFEAATLA  277 (351)
Q Consensus       262 -----~~~~~s~~~~~~~~~~  277 (351)
                           ..+.++.+|+..+...
T Consensus       516 ~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             SCCCSCCEEEEETTEEEEEEE
T ss_pred             CCcccCceEEEECCEEEEEEE
Confidence                 3467788888654443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.45  E-value=5.1e-11  Score=106.42  Aligned_cols=236  Identities=13%  Similarity=-0.002  Sum_probs=163.7

Q ss_pred             CCcE--EEEeCCCcEEEEeCCCCeeeEEeeCC-CCCeEEEEE-e-CCCCEEEEEe------------------CCCcEEE
Q psy519           61 KGLA--LTGSRDTTARLWSLEQMYPLRIFVGH-KQDVTCARF-H-PKITYIGTGS------------------YDKAVRL  117 (351)
Q Consensus        61 ~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~i~~i~~-~-~~~~~l~~~~------------------~dg~i~i  117 (351)
                      ||++  +....++.|.+.|+.+.+....+.-. ......+++ + |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            6666  55556778999999999987755422 345788888 5 8999998885                  2457999


Q ss_pred             EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC-----------------------------------CeEEE
Q psy519          118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD-----------------------------------KAVRL  162 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d-----------------------------------~~i~i  162 (351)
                      .|..+.+...++.-.. ....++++|+|+++++++..+..                                   +.|.+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            9999998888776333 44668899999999998863211                                   24777


Q ss_pred             EEccC--Cce-eEEeccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCc------------EEEEeeccCCCCEEE
Q psy519          163 WSITD--GAS-VRVFSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGR------------VISRFHLQEHEPVTS  226 (351)
Q Consensus       163 ~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~v~~  226 (351)
                      .|.++  ++. +..+... ....++.++|||+++++++ .+..|.++|+.+.+            .....  ........
T Consensus       259 ID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~h  335 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPLH  335 (595)
T ss_dssp             EECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEEE
T ss_pred             EeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcce
Confidence            77776  444 4444332 2345789999999887776 47899999998653            23333  34467899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCC----------Cceeeeeec----------ceeEEecCCceeeeeeccceeeEE-
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPS----------ASKIGIGVY----------PRCAAQPVGFEAATLAANSRVRTL-  285 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~----------~~~~~~~~~----------~~~~~s~~~~~~~~~~~~~~~~~~-  285 (351)
                      ++|+|+|...++.-.|++|.+||+..          .+.+....+          .....+|||+++.++...+.++.+ 
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            99999994344555699999999987          344444333          234668999999888877766542 


Q ss_pred             ---------EeeeceeCceEEEee
Q psy519          286 ---------REMHEIVGPVVVVES  300 (351)
Q Consensus       286 ---------~~~~~~~g~~~~~~~  300 (351)
                               .+++...++...+..
T Consensus       416 ~gp~~~~~~ql~dis~~~m~lv~d  439 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGDKMVLVHD  439 (595)
T ss_dssp             CCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             CCCCCCCcceEEEcCCCcEEEEEE
Confidence                     566665455444433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.44  E-value=3.5e-11  Score=112.19  Aligned_cols=247  Identities=11%  Similarity=0.084  Sum_probs=168.7

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCC-c----cceEEEEECCCCcEEEEeC------CCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGH-D----MTVWSVEACSKGLALTGSR------DTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~-~----~~i~~~~~~~~~~~~~~~~------d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..|++++.++.+..+|..++     ...+ .    ..+...-...++.++.++.      ++.|+.+|.++++.+..+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            567788888899999998776     1111 0    1111100012455554443      6899999999999887775


Q ss_pred             CCCCC--------------------------------eEEEEEeCCCCEEEEEeCCC-------------------cEEE
Q psy519           89 GHKQD--------------------------------VTCARFHPKITYIGTGSYDK-------------------AVRL  117 (351)
Q Consensus        89 ~~~~~--------------------------------i~~i~~~~~~~~l~~~~~dg-------------------~i~i  117 (351)
                      .....                                ...++++|++..++.+..++                   .|..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            42211                                12478889888888887664                   5999


Q ss_pred             EeCCCCceeEEecc--CC-------CCeEEEEEccCC---CEEEEEecCCCCCeEEEEEccCCceeEEeccCC-------
Q psy519          118 WSITDGASVRVFSD--HV-------SPVLSIAFSPCG---KYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-------  178 (351)
Q Consensus       118 ~d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------  178 (351)
                      +|.++++.+..++.  |.       ....-+....+|   ..++.++.   +|.++++|.++|+.+..+....       
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~---~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK---NGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT---TSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECC---CCEEEEEECCCCCEeccccccccCccccc
Confidence            99999998877653  21       122223444477   67888877   9999999999999877654221       


Q ss_pred             ----CCE------------------------EEEEECCCCcEEEEEcC--------------------------------
Q psy519          179 ----SPV------------------------LSIAFSPCGKYLASGGE--------------------------------  198 (351)
Q Consensus       179 ----~~i------------------------~~~~~~~~~~~l~~~~~--------------------------------  198 (351)
                          .++                        ..++++|++.++++...                                
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                011                        14678898888877543                                


Q ss_pred             -----------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-----
Q psy519          199 -----------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYP-----  262 (351)
Q Consensus       199 -----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----  262 (351)
                                 .|.|..||+.+++.+-.+..  ..++....+..++.+++.++.||.+++||..+++.+....+.     
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~  522 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA  522 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence                       27899999999998877653  334455556677888999999999999999999998764433     


Q ss_pred             -eeEEecCCceeeee
Q psy519          263 -RCAAQPVGFEAATL  276 (351)
Q Consensus       263 -~~~~s~~~~~~~~~  276 (351)
                       .+.++++|+..+..
T Consensus       523 ~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          523 APSTYMVDGRQYVSV  537 (677)
T ss_dssp             CCEEEEETTEEEEEE
T ss_pred             CCEEEEeCCEEEEEE
Confidence             35666888765444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=9.9e-11  Score=100.37  Aligned_cols=224  Identities=11%  Similarity=0.007  Sum_probs=145.1

Q ss_pred             cceEEEEECCCCcE-EEEe--CCCcEEEEeCCCCeeeEEe-------eCCCCCeEEEEEeCCCCEEEEEeC-----CCcE
Q psy519           51 MTVWSVEACSKGLA-LTGS--RDTTARLWSLEQMYPLRIF-------VGHKQDVTCARFHPKITYIGTGSY-----DKAV  115 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~--~d~~i~vw~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i  115 (351)
                      ..+..++++++|++ ++..  .++.++||.+.+++.. .+       ..+-..+.+++++++++++++...     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            56889999999988 5543  2342555555455432 22       124467899999999876665433     5789


Q ss_pred             EEEeCCCCceeEEecc------CCCCeEEEEEccCCCEEEEEecC-CCCCeEEEEEccCCceeEEeccCC----------
Q psy519          116 RLWSITDGASVRVFSD------HVSPVLSIAFSPCGKYLASGGTG-SYDKAVRLWSITDGASVRVFSDHV----------  178 (351)
Q Consensus       116 ~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~----------  178 (351)
                      .+||+.+++.+..+..      +...+..+++++++..++.+... ..++.|.+||+.+++..+.+..|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999999887665542      12356889999865555444320 017899999998887666553321          


Q ss_pred             -------------------CCEEEEEECCCCcEEEEEcCCC-eEEEEEcC---CCc-----E---EEEeeccCCCCEEEE
Q psy519          179 -------------------SPVLSIAFSPCGKYLASGGEDG-LVLTHELT---TGR-----V---ISRFHLQEHEPVTSL  227 (351)
Q Consensus       179 -------------------~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~-----~---~~~~~~~~~~~v~~~  227 (351)
                                         ..+..++|+|+++.|+.+..++ .+..++..   .+.     .   +...  .+......+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgi  253 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGI  253 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceE
Confidence                               2357899999999888877655 55555532   111     0   0111  122356789


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeeee------ecceeEEecCCceeeeee
Q psy519          228 VWSVTGETLVTGSLTGTVQFYGWPSASKIGIG------VYPRCAAQPVGFEAATLA  277 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~  277 (351)
                      +++++|.++++...++.|.+||..+++.....      ....+++.+++..+++..
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            99999999999888999999998556543221      134577777766554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.41  E-value=3.7e-11  Score=103.01  Aligned_cols=258  Identities=12%  Similarity=-0.065  Sum_probs=169.6

Q ss_pred             EEEeCCC----cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEec
Q psy519           65 LTGSRDT----TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS----------YDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        65 ~~~~~d~----~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~  130 (351)
                      ++...++    +|.++|..+++.+..+.....+  .+.++||+++++++.          .++.|.+||+.+++.+..+.
T Consensus        36 V~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           36 ITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             EECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            5555555    8889999999999988765566  799999999998886          36889999999999988875


Q ss_pred             cC-------CCCeEEEEEccCCCEEEEEecCCCCCeEEE--EEccCCceeEEeccCCCCEEEEEECCCC-cEEEEEcCCC
Q psy519          131 DH-------VSPVLSIAFSPCGKYLASGGTGSYDKAVRL--WSITDGASVRVFSDHVSPVLSIAFSPCG-KYLASGGEDG  200 (351)
Q Consensus       131 ~~-------~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  200 (351)
                      ..       ......++++|||++++++... .+..+.+  +|+.+   +..+.....    ..+.|++ ..+++.+.||
T Consensus       114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg  185 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFG-SSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECS-SSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTT
T ss_pred             CCCccccccCCCcceEEEcCCCCEEEEEccC-CCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCC
Confidence            32       1234679999999999988641 1356888  99877   444432111    1223444 3445566788


Q ss_pred             eEEEEEcCC-----CcEEE----EeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeee----------
Q psy519          201 LVLTHELTT-----GRVIS----RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS--KIGIG----------  259 (351)
Q Consensus       201 ~i~i~d~~~-----~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~----------  259 (351)
                      .+.+.|+.+     ++...    .+.. ...+.   . .+++..++..+. +.+.+.|+.+..  .+...          
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~v-g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNC-SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCB-CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeC-CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence            888888876     33221    1111 12233   3 566666666666 999999987543  21111          


Q ss_pred             -----ecceeEEecCCceeeeeec-c-c-----eeeEEEeeeceeCceEEEe-----eEEEEecCCceeeccEEE-ecCC
Q psy519          260 -----VYPRCAAQPVGFEAATLAA-N-S-----RVRTLREMHEIVGPVVVVE-----SFIVEIRPDKWYEANLIV-LDDD  321 (351)
Q Consensus       260 -----~~~~~~~s~~~~~~~~~~~-~-~-----~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~  321 (351)
                           ....++++|++..+.+... . +     ..... ++|..+++...-.     ...+.|+||+.+...... .+++
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~-ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~  338 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS-SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE-EEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE-EEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCe
Confidence                 1122789999998776654 2 2     12222 7776665433211     223689999986655545 4799


Q ss_pred             ccccceeeeeeeeecCCc
Q psy519          322 LKECNLETYSQMIPVPSG  339 (351)
Q Consensus       322 i~~~~~~~~~~~~~~~~~  339 (351)
                      +..+|+++.+....++.+
T Consensus       339 VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          339 LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEESSSCEEEEECCCC
T ss_pred             EEEEECCCCcEEEEEECC
Confidence            999999998877766654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.40  E-value=5.9e-14  Score=121.60  Aligned_cols=185  Identities=12%  Similarity=0.003  Sum_probs=108.2

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCC-CeE-E
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS-PVL-S  138 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~-~  138 (351)
                      ++.+++++.|+.|+.||..+++.+..+..  ..+.+..+..++..+++++.||.|+.||..+++.+.....+.. .+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            45668899999999999999999888876  4454545556777788888999999999999887766543211 010 0


Q ss_pred             EEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec
Q psy519          139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL  218 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  218 (351)
                      ..+. ++..+++++.   ++.++.||.++|+.+..+..+.    ...++|++..+++++.++.|+.||.++++.+-.+..
T Consensus        87 p~~~-~~~~v~~g~~---dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           87 PCRS-SDGILYMGKK---QDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             SCC------CCCCEE---EEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             ceEe-cCCEEEEEeC---CCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            1111 3456677777   8999999999999887775543    235667888999999999999999999987655532


Q ss_pred             cCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceeee
Q psy519          219 QEHEPVTSLVWSVTG---ETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       219 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ..   .....++.+.   ..+++++.||.++.||..+++.+-.
T Consensus       159 ~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          159 FD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             EE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             cc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence            11   1223333332   5577788999999999999987654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.39  E-value=3.1e-10  Score=98.01  Aligned_cols=221  Identities=12%  Similarity=0.060  Sum_probs=150.9

Q ss_pred             eec--CCccccEEE-EecCCCceEEEecCCc---------cC-------CCccceEEEEECCCCcEEEEeCC------Cc
Q psy519           18 SFK--PETVEDVLA-NLESQKNLQSRYLPYY---------TS-------GHDMTVWSVEACSKGLALTGSRD------TT   72 (351)
Q Consensus        18 ~~s--p~~~~~~l~-~~~~~~~i~i~~~~~~---------~~-------~~~~~i~~~~~~~~~~~~~~~~d------~~   72 (351)
                      .++  ++  +++|+ .+..++.|+++|+.+.         ..       ........+...|+|.++++..+      +.
T Consensus        88 ~~~~~~~--r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIE--RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCC--SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCE
T ss_pred             ccCCCcc--CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCe
Confidence            446  67  66655 5667889999998644         10       01124456778899944665555      78


Q ss_pred             EEEEeCCCCeeeEEeeCCCC---CeEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCCceeEEec
Q psy519           73 ARLWSLEQMYPLRIFVGHKQ---DVTCARFHPKITYIGTGS-------------------YDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~  130 (351)
                      +.++|.++++.+..+.....   --..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++.
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            99999999999888863222   123578899999888874                   36899999999988777775


Q ss_pred             cC--CCCeEEEEE--ccCCCEEEEEec---CCCCCeEEEEEccCCce--eEEe--ccC----------------CCCEEE
Q psy519          131 DH--VSPVLSIAF--SPCGKYLASGGT---GSYDKAVRLWSITDGAS--VRVF--SDH----------------VSPVLS  183 (351)
Q Consensus       131 ~~--~~~i~~~~~--~~~~~~l~~~~~---~~~d~~i~i~d~~~~~~--~~~~--~~~----------------~~~i~~  183 (351)
                      ..  ......+.|  +|++++++++..   ...++.|.+|....++.  .+.+  ...                ......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            42  123455656  999999887763   00177888776655421  1111  110                234678


Q ss_pred             EEECCCCcEEEEEcC-CCeEEEEEcCC---CcEEEEeeccCC-------------CCEEEEEEcCCCCEEEEEe
Q psy519          184 IAFSPCGKYLASGGE-DGLVLTHELTT---GRVISRFHLQEH-------------EPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~  240 (351)
                      +.++|||++|+++.. .+.|.+||+..   .+.+..+.....             .....+.++|||++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999988875 67999999863   345555543311             1368899999999999887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.38  E-value=8.2e-09  Score=85.02  Aligned_cols=239  Identities=10%  Similarity=-0.036  Sum_probs=149.1

Q ss_pred             cEEEEecCCCceEEEecCCccC----------CCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCC
Q psy519           26 DVLANLESQKNLQSRYLPYYTS----------GHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFVGHKQD   93 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~~~----------~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~   93 (351)
                      ++|..+.. +.|+.++++....          .....+..++|++++ .+ ++-..++.|.++++........+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            44555443 4677777765411          012345789999864 55 66666789999999866543333333356


Q ss_pred             eEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeE
Q psy519           94 VTCARFHPKITYIG-TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVR  172 (351)
Q Consensus        94 i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~  172 (351)
                      ...+++++++..|+ +....+.|.++++..................++++|++..|+.+......+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            78999999765554 44556889999986443222222222567899999977777666542113688888875433 33


Q ss_pred             Ee-ccCCCCEEEEEECCCCcEEE-EEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEe
Q psy519          173 VF-SDHVSPVLSIAFSPCGKYLA-SGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS-LTGTVQFYG  249 (351)
Q Consensus       173 ~~-~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~  249 (351)
                      .+ .........++++|++..|+ +-...+.|..+|+........+  ........++..  +..|+.+. ..+.|..+|
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--ECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe--cCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            32 22334678999999876555 4455689999998754333322  223445677764  44555444 568999999


Q ss_pred             CCCCceeeeee------cceeEEecCC
Q psy519          250 WPSASKIGIGV------YPRCAAQPVG  270 (351)
Q Consensus       250 ~~~~~~~~~~~------~~~~~~s~~~  270 (351)
                      ..+++.+....      ...+++.|++
T Consensus       236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          236 LAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCCCCceEEEccccccccceeeecCcc
Confidence            99888766532      2345555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.36  E-value=4.2e-10  Score=105.18  Aligned_cols=266  Identities=11%  Similarity=0.028  Sum_probs=170.8

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCcc----------ce-EEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDM----------TV-WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~----------~i-~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..|++++.++.|.-+|..++     ...+..          .+ ..+.. .+++++.++.|+.|..+|.++|+.+..+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            456666777788888888766     111100          00 11122 24566888899999999999999987775


Q ss_pred             CC--CCCeEEEEEeC---CCCEEEEEe------CCCcEEEEeCCCCceeEEeccCC------------------------
Q psy519           89 GH--KQDVTCARFHP---KITYIGTGS------YDKAVRLWSITDGASVRVFSDHV------------------------  133 (351)
Q Consensus        89 ~~--~~~i~~i~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~------------------------  133 (351)
                      ..  ......+..+|   ++ .+++++      .+|.|+.||.++|+.+..+....                        
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             CcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            42  11111111122   44 444443      36899999999999887664210                        


Q ss_pred             -------CCeEEEEEccCCCEEEEEecCCCCC-------------------eEEEEEccCCceeEEecc--CC-------
Q psy519          134 -------SPVLSIAFSPCGKYLASGGTGSYDK-------------------AVRLWSITDGASVRVFSD--HV-------  178 (351)
Q Consensus       134 -------~~i~~~~~~~~~~~l~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~--~~-------  178 (351)
                             .....++++|++..++.+..   ++                   .|..+|.++|+.+-.++.  |.       
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~---~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVG---NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECC---CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCC---CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                   01125788998888888876   54                   499999999998877754  21       


Q ss_pred             CCEEEEEECCCCc---EEEEEcCCCeEEEEEcCCCcEEEEeeccCCC---------------------------------
Q psy519          179 SPVLSIAFSPCGK---YLASGGEDGLVLTHELTTGRVISRFHLQEHE---------------------------------  222 (351)
Q Consensus       179 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------------------------  222 (351)
                      .+........+|+   .++.++.+|.++++|.++|+.+.........                                 
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~  384 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA  384 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence            1222222223565   7888999999999999999988544322100                                 


Q ss_pred             -----CEEEEEEcCCCCEEEEEeC---------------------------------------------CCeEEEEeCCC
Q psy519          223 -----PVTSLVWSVTGETLVTGSL---------------------------------------------TGTVQFYGWPS  252 (351)
Q Consensus       223 -----~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~i~~~~~  252 (351)
                           .-..++|+|+..++++...                                             +|.|..||+.+
T Consensus       385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence                 1123688898888776532                                             37899999999


Q ss_pred             Cceeeeee----cceeEEecCCceeeeeeccceeeEEEeeeceeCceEEE
Q psy519          253 ASKIGIGV----YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       253 ~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      ++.+-...    .....+...+..++.++.++   .++.|+..+|+..+.
T Consensus       465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg---~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADG---RVIAYAADTGEKLWE  511 (689)
T ss_dssp             TEEEEEEEESSSCCCCEEEETTTEEEEECTTS---EEEEEETTTCCEEEE
T ss_pred             CCeEeEccCCCCccCccceECCCEEEEECCCC---cEEEEECCCCcccee
Confidence            98765422    22346666777777766555   677777777776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=6.2e-11  Score=101.64  Aligned_cols=227  Identities=10%  Similarity=-0.063  Sum_probs=140.4

Q ss_pred             EEEEecCCC----ceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEe----------CCCcEEEEeCCCCeeeEE
Q psy519           27 VLANLESQK----NLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGS----------RDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        27 ~l~~~~~~~----~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~----------~d~~i~vw~~~~~~~~~~   86 (351)
                      .+++...++    +|.++|..+.     ......+  .+.++|+++. +++.          .++.|.+||+.+++.+..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            444444444    7789998887     2222234  7999999976 4443          368899999999999988


Q ss_pred             eeCC-------CCCeEEEEEeCCCCEEEEEeC--CCcEEE--EeCCCCceeEEeccCC-------CCeEEEEEccCCCEE
Q psy519           87 FVGH-------KQDVTCARFHPKITYIGTGSY--DKAVRL--WSITDGASVRVFSDHV-------SPVLSIAFSPCGKYL  148 (351)
Q Consensus        87 ~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l  148 (351)
                      +..+       ......++++|||++++++..  +..+.+  +|+.+   +..+....       +.-.-++++++++.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~  188 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEE
Confidence            8543       123567899999999998875  356888  88866   22221100       000012222333222


Q ss_pred             EEEecC----------------------------------CCCCeEEEEEccCCc--eeEEecc-------CC---CCEE
Q psy519          149 ASGGTG----------------------------------SYDKAVRLWSITDGA--SVRVFSD-------HV---SPVL  182 (351)
Q Consensus       149 ~~~~~~----------------------------------~~d~~i~i~d~~~~~--~~~~~~~-------~~---~~i~  182 (351)
                      +.....                                  +. +.+.+.|+....  .+..+..       +.   ....
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence            221110                                  00 345555554321  1111110       00   0111


Q ss_pred             EEEECCCCcEEEEEcC---------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCC
Q psy519          183 SIAFSPCGKYLASGGE---------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE-TLVTGS-LTGTVQFYGWP  251 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~~~~  251 (351)
                      .+.++||++.++++..         ++.+.++|+.+.+.+..+....  ....++|+|||+ ++++.. .++.|.++|+.
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            2689999988887643         2356799999999988876543  689999999998 455565 58999999999


Q ss_pred             CCceeeeeec
Q psy519          252 SASKIGIGVY  261 (351)
Q Consensus       252 ~~~~~~~~~~  261 (351)
                      +++.+....+
T Consensus       346 t~kvv~~I~v  355 (368)
T 1mda_H          346 SDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEECCC
T ss_pred             CCcEEEEEEC
Confidence            9998876443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.35  E-value=1e-09  Score=89.20  Aligned_cols=194  Identities=8%  Similarity=0.005  Sum_probs=140.6

Q ss_pred             ceEEEEECCCCcE-EEEeC--CCcEEEEeCCCCeeeEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q psy519           52 TVWSVEACSKGLA-LTGSR--DTTARLWSLEQMYPLRIFVGHK-QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR  127 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~--d~~i~vw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  127 (351)
                      ....++|++++.+ ++.+.  ++.|+++|+.+++.+..+.-.. .....+++.. +...++.-.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEE
Confidence            3578999998877 55543  6899999999999888775322 2233566653 2344444567899999999999888


Q ss_pred             EeccC-CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcCCCe
Q psy519          128 VFSDH-VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       128 ~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      .+... ..   ...+++||+.++++..   ++.|.++|..+.+.+..+.-..     ..+..+.|. ++...+....++.
T Consensus       101 ~i~~g~~~---g~glt~Dg~~l~vs~g---s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          101 NFTHQMKD---GWGLATDGKILYGSDG---TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEECCSSS---CCEEEECSSSEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEECCCCC---eEEEEECCCEEEEECC---CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            88533 22   2446668888887765   8899999999988887765321     236678888 7766655556889


Q ss_pred             EEEEEcCCCcEEEEeeccC------------CCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC
Q psy519          202 VLTHELTTGRVISRFHLQE------------HEPVTSLVWSVTGETLV-TGSLTGTVQFYGWPSA  253 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~  253 (351)
                      |.+.|..+++.+..+....            ......++|+|+++.++ ++...+.+.+.++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999999887531            13578999999987554 5556788888887653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=1.1e-09  Score=102.16  Aligned_cols=264  Identities=11%  Similarity=0.045  Sum_probs=172.6

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCCcc---------ceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGHDM---------TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~~~---------~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..|++++.++.|.-+|..++       ......         ....+++ .+++++.++.|+.+..+|.++++.+..+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            345666666788888887766       111000         0012222 24566888899999999999999988886


Q ss_pred             CC-C----CCeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEeccCCCC---------------------
Q psy519           89 GH-K----QDVTC-ARFHPKITYIGTGSY------DKAVRLWSITDGASVRVFSDHVSP---------------------  135 (351)
Q Consensus        89 ~~-~----~~i~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~---------------------  135 (351)
                      .+ .    ..+.. ...  .+..+++++.      ++.|+.+|..+|+.+..+......                     
T Consensus       156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            54 2    11211 111  1345555543      689999999999988776432111                     


Q ss_pred             -----------eEEEEEccCCCEEEEEecCCCCC-------------------eEEEEEccCCceeEEecc--CC-----
Q psy519          136 -----------VLSIAFSPCGKYLASGGTGSYDK-------------------AVRLWSITDGASVRVFSD--HV-----  178 (351)
Q Consensus       136 -----------i~~~~~~~~~~~l~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~--~~-----  178 (351)
                                 ...++++|++..++.+..   ++                   .|..+|.++++.+-.++.  |.     
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~---~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~  310 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTG---NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT  310 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECC---CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECC---CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence                       135788998888888765   43                   599999999998877653  21     


Q ss_pred             --CCEEEEEECCCC---cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCC----------CE-------------------
Q psy519          179 --SPVLSIAFSPCG---KYLASGGEDGLVLTHELTTGRVISRFHLQEHE----------PV-------------------  224 (351)
Q Consensus       179 --~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~v-------------------  224 (351)
                        .....+....+|   ..++.++.+|.++++|.++|+.+..+......          ++                   
T Consensus       311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence              112223333477   68889999999999999999988766532111          01                   


Q ss_pred             -----EEEEEcCCCCEEEEEeC-------------------------------------------CCeEEEEeCCCCcee
Q psy519          225 -----TSLVWSVTGETLVTGSL-------------------------------------------TGTVQFYGWPSASKI  256 (351)
Q Consensus       225 -----~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~i~~~~~~~~~  256 (351)
                           ..++++|++.++++...                                           .|.|..||+.+++.+
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 15688998888877543                                           278999999999876


Q ss_pred             eeee----cceeEEecCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          257 GIGV----YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       257 ~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                      -...    .....+...+..+.+++.++   .++.++..+|+...
T Consensus       471 W~~~~~~~~~~g~~~~~g~~v~~g~~dg---~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          471 WSVEHVSPWNGGTLTTAGNVVFQGTADG---RLVAYHAATGEKLW  512 (677)
T ss_dssp             EEEEESSSCCCCEEEETTTEEEEECTTS---EEEEEETTTCCEEE
T ss_pred             eecCCCCCCcCcceEeCCCEEEEECCCC---cEEEEECCCCceee
Confidence            4422    23456677777777665555   56666666666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=6.3e-09  Score=90.22  Aligned_cols=255  Identities=9%  Similarity=0.008  Sum_probs=162.0

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCC-------ccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCC
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGH-------DMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGH   90 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~-------~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~   90 (351)
                      +..+++++.++.|..+|..++       ....       ...+.+.-...++.++.++.++.|..+|.++++.+..+...
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            566777778889999998765       1110       22233322234567788889999999999999988776544


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCe-----EEEEEccCCCEEEEEecCCCCCeEEEEEc
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPV-----LSIAFSPCGKYLASGGTGSYDKAVRLWSI  165 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~~~d~~i~i~d~  165 (351)
                      ..........  +..+++++.++.+..+|..+++.+..........     ......  +..++++..   ++.+..+|.
T Consensus       133 ~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~---~g~l~~~d~  205 (376)
T 3q7m_A          133 GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD---NGRVSAVLM  205 (376)
T ss_dssp             SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT---TTEEEEEET
T ss_pred             CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC---CCEEEEEEC
Confidence            3222222222  4477788889999999999999887765322111     112222  456777776   899999999


Q ss_pred             cCCceeEEeccCCCC----EE---EEEECC--CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE
Q psy519          166 TDGASVRVFSDHVSP----VL---SIAFSP--CGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL  236 (351)
Q Consensus       166 ~~~~~~~~~~~~~~~----i~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  236 (351)
                      ++++.+.........    +.   .+.-.|  .+..+++++.++.+..+|.++++.+-....   .....+..  ++..+
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l  280 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIV--DGNRI  280 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEE--ETTEE
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceE--ECCEE
Confidence            999887766432110    00   011122  356777788899999999999998766542   23444444  46678


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeee------cceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          237 VTGSLTGTVQFYGWPSASKIGIGV------YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       237 ~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +.++.++.+..+|..+++.+-...      ......  .+..+.++..++   .+..++..+|+..
T Consensus       281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g---~l~~~d~~tG~~~  341 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG---YLHWINVEDGRFV  341 (376)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS---EEEEEETTTCCEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC---eEEEEECCCCcEE
Confidence            888889999999999998765432      111222  234455555554   4556666667644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=1.5e-09  Score=94.25  Aligned_cols=224  Identities=10%  Similarity=-0.005  Sum_probs=146.4

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceE-EEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCe----
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVW-SVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDV----   94 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i----   94 (351)
                      +..+++++.++.|..+|..++     .... ..+. .... .++.++.++.++.+..+|.++++.+..+.......    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            556777778899999998765     1111 1111 1111 25666888899999999999999887775432211    


Q ss_pred             -EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCC-------eEEEEEcc--CCCEEEEEecCCCCCeEEEEE
Q psy519           95 -TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP-------VLSIAFSP--CGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        95 -~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d  164 (351)
                       ......  +..++.++.++.+..+|..+++.+.........       +..+...|  .+..+++++.   ++.+..+|
T Consensus       181 ~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~---~g~l~~~d  255 (376)
T 3q7m_A          181 ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY---NGNLTALD  255 (376)
T ss_dssp             CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT---TSCEEEEE
T ss_pred             CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec---CcEEEEEE
Confidence             112222  356777888999999999999887766422110       00011111  3466777777   89999999


Q ss_pred             ccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe
Q psy519          165 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT  244 (351)
Q Consensus       165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  244 (351)
                      .++++.+.....  .....+..  ++..+++++.++.+..+|..+++.+-...............  .+..|++++.+|.
T Consensus       256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~  329 (376)
T 3q7m_A          256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGY  329 (376)
T ss_dssp             TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSE
T ss_pred             CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCe
Confidence            999988766542  23444444  36677788889999999999999876654222222233333  2567888899999


Q ss_pred             EEEEeCCCCceeeeeec
Q psy519          245 VQFYGWPSASKIGIGVY  261 (351)
Q Consensus       245 i~i~~~~~~~~~~~~~~  261 (351)
                      +.++|..+++.+.....
T Consensus       330 l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          330 LHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCcEEEEEec
Confidence            99999999988765433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.32  E-value=1.3e-09  Score=88.47  Aligned_cols=200  Identities=11%  Similarity=0.043  Sum_probs=139.3

Q ss_pred             eeeEEeeCCCC--CeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCC-CCeEEEEEccCCCEEEEEecCCC
Q psy519           82 YPLRIFVGHKQ--DVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHV-SPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        82 ~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.++.+..  .
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~--~   84 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW--L   84 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET--T
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe--c
Confidence            4455553 443  3689999998755555443  5799999999999888765222 222345554  556665554  2


Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCC
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVT  232 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~  232 (351)
                      ++.+.++|..+.+.+.++......  ...+++||+.++++..++.|.++|..+.+.+..+.....    ..++.+.|. +
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            899999999999988888543111  233556788777777889999999999998888865432    246788888 6


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeec------------------ceeEEecCCcee-eeeeccceeeEEEeee
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKIGIGVY------------------PRCAAQPVGFEA-ATLAANSRVRTLREMH  289 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------------------~~~~~s~~~~~~-~~~~~~~~~~~~~~~~  289 (351)
                      +...+....++.|.+.|..+++.+....+                  +.++++|++..+ +++.....+..+++-.
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            75555555678999999999998876433                  478999998754 4454566666666644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.32  E-value=1.3e-08  Score=83.88  Aligned_cols=216  Identities=9%  Similarity=0.042  Sum_probs=141.7

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc-----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|+|+  +..| ++-...+.|..++....     ..........+++.++ +.+ ++-...+.|.+++++....
T Consensus        36 ~~~~gi~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcEEEEEEecC--CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            34568999996  5544 45555788999998765     1122246788999986 455 6666678999999875432


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSY---DKAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      .............++++|++..|+.+..   .+.|..+++... ....+ .........++++|++..|+.+...  .+.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~  190 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THR  190 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECC--CCE
Confidence            2222222246789999997666655543   368888887643 33332 2233567899999988877776542  678


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE  234 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  234 (351)
                      |..+|+........... ......++.. ++..+++...++.|..+|..+++.+..+..........+++.|++.
T Consensus       191 I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          191 AECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            99999875443333332 2344667664 4444455556789999999999988887643323467888888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.28  E-value=8.9e-13  Score=114.17  Aligned_cols=214  Identities=15%  Similarity=0.083  Sum_probs=117.1

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCC-eE-E
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQD-VT-C   96 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-i~-~   96 (351)
                      +..+++++.|+.|+.||..++     ...  +.+.+..+..++.+ ++++.|+.|+.||.++++.+..+..+... +. .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            778999999999999998876     212  34444445566655 66789999999999998877665433211 10 0


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc
Q psy519           97 ARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus        97 i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      ..+. ++..+++++.++.++.||..+|+.+..+..+.    ...++|++..+++++.   ++.|+.||.++++.+..+..
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT---EYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC--------------------------EEEEEE---EEEEECCCSSSSSCCCEEEE
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec---CCEEEEEECCCCCEEEeEec
Confidence            1111 34567788889999999999999887776443    2345678888888888   99999999999987655532


Q ss_pred             CCCCEEEEEECCCC---cEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEE-EEEcCCCCEE----EEEeCCCeEEEE
Q psy519          177 HVSPVLSIAFSPCG---KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS-LVWSVTGETL----VTGSLTGTVQFY  248 (351)
Q Consensus       177 ~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l----~~~~~dg~i~i~  248 (351)
                      ..  .....+.++.   ..+++++.+|.++.||.++++.+-.+..  ..++.. ..+++++...    +.+  ++.++.+
T Consensus       159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~l  232 (369)
T 2hz6_A          159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--ASPVVAFYVWQREGLRKVMHINVA--VETLRYL  232 (369)
T ss_dssp             EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--SSCEEEEEECTTSSCEEECCEEEE--HHHHHHH
T ss_pred             cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--CCceEEEEEecCCceEeccceeec--ccceeee
Confidence            11  1223333332   4577788899999999999998776653  344443 4455565432    122  3345555


Q ss_pred             eCCCCc
Q psy519          249 GWPSAS  254 (351)
Q Consensus       249 ~~~~~~  254 (351)
                      |..+++
T Consensus       233 d~~tG~  238 (369)
T 2hz6_A          233 TFMSGE  238 (369)
T ss_dssp             HHHHHH
T ss_pred             ehhcCC
Confidence            554444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.27  E-value=6.5e-09  Score=88.16  Aligned_cols=232  Identities=7%  Similarity=-0.037  Sum_probs=151.9

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-cCC-----------------------CccceEEEEECC-CCcEEEE
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-TSG-----------------------HDMTVWSVEACS-KGLALTG   67 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-~~~-----------------------~~~~i~~~~~~~-~~~~~~~   67 (351)
                      ....++|+|+  +.++.++..++.|..|+.... ...                       ....+..+++.+ ++.++.+
T Consensus        20 ~p~~i~~d~~--g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDST--NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCCEECCTT--CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEcCC--CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            3456889999  997888888899999987654 110                       013578899997 7888666


Q ss_pred             eCCCcEEEEeCCCCeeeEEeeC-----CCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEeCCCCc
Q psy519           68 SRDTTARLWSLEQMYPLRIFVG-----HKQDVTCARFHP-KITYIGTGSY-----------------DKAVRLWSITDGA  124 (351)
Q Consensus        68 ~~d~~i~vw~~~~~~~~~~~~~-----~~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~  124 (351)
                      ...+.+..+|..+++.. .+..     .......+++.+ +|++.++...                 ++.|..+|..+++
T Consensus        98 d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            65666888998765432 2211     113467899999 8987766432                 3678899987665


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcC----
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGE----  198 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----  198 (351)
                      ....... ......++++|+++.|+++...  ++.|..|++....  ....+....+ ...+++.++|++.++...    
T Consensus       177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEeccC-CccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence            4332221 2334679999999977766431  6899999987521  1222211223 788999999987666544    


Q ss_pred             ------CCeEEEEEcCCCcEEEEeeccC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          199 ------DGLVLTHELTTGRVISRFHLQE---HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       199 ------dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                            .+.|..+|. .++.+..+....   ...+..+++ .++++.++...++.|..+++...
T Consensus       253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                  467888887 477777665433   234666766 35665566556788999987643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.25  E-value=3.8e-09  Score=84.76  Aligned_cols=181  Identities=13%  Similarity=0.083  Sum_probs=130.7

Q ss_pred             ceEEEEECCCCcE-EEEeCCC--cEEEEeCCCCeeeEEeeCCCCC-eEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCcee
Q psy519           52 TVWSVEACSKGLA-LTGSRDT--TARLWSLEQMYPLRIFVGHKQD-VTCARFHPKITYIGTG-SYDKAVRLWSITDGASV  126 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  126 (351)
                      -...+.|+ ++.+ .+.+.+|  .|+++|+++++.+..+...... --.++..  ++.|+.. -.++.+.+||..+.+.+
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence            34778888 5666 7777765  8999999999998887644322 1234444  4455444 45889999999999999


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcCCCe
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      .++.-..   ....+.++++.|+.+..   ++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++.
T Consensus       121 ~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~  193 (262)
T 3nol_A          121 RSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK  193 (262)
T ss_dssp             EEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence            8886432   22334457888887765   7889999999998887765421     335567776 7776666667889


Q ss_pred             EEEEEcCCCcEEEEeeccC-----------CCCEEEEEEcCCCCEEEEEeCC
Q psy519          202 VLTHELTTGRVISRFHLQE-----------HEPVTSLVWSVTGETLVTGSLT  242 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d  242 (351)
                      |.+.|.++++.+..+....           ....+.++|+|+++.|++.+..
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999999999998887531           1356899999998887777653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.24  E-value=8.5e-10  Score=98.63  Aligned_cols=225  Identities=11%  Similarity=0.005  Sum_probs=155.4

Q ss_pred             CCccccEEEEecC-CCceEEEecCCc-----cC-CCccceEEEEE-C-CCCcE-EEEe------------------CCCc
Q psy519           21 PETVEDVLANLES-QKNLQSRYLPYY-----TS-GHDMTVWSVEA-C-SKGLA-LTGS------------------RDTT   72 (351)
Q Consensus        21 p~~~~~~l~~~~~-~~~i~i~~~~~~-----~~-~~~~~i~~~~~-~-~~~~~-~~~~------------------~d~~   72 (351)
                      ||  |++|..... ++.|.+.|+...     .. .....+..+++ . |++.+ ++++                  .++.
T Consensus        99 ~D--G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YD--GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EE--EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cC--CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            37  887776554 567999999886     11 12345778887 4 88888 4442                  2467


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--------------------------------------c
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK--------------------------------------A  114 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------------------------------~  114 (351)
                      +.+.|.++.+....+.-.. ....++++|+|+++++.+.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999998888776333 356788999999998887543                                      4


Q ss_pred             EEEEeCCC--Cce-eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc------------eeEEeccCCC
Q psy519          115 VRLWSITD--GAS-VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA------------SVRVFSDHVS  179 (351)
Q Consensus       115 i~i~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~  179 (351)
                      |.+.|.++  ++. +..+.. .....++.++|||+++++++..  +..|.++|+.+.+            ...... -..
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~  331 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL  331 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCC--CCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence            67777776  444 344432 2345679999999999888754  8899999998653            233333 334


Q ss_pred             CEEEEEECCCCcEEEEEcCCCeEEEEEcCC----------CcEEEEeeccCCCCEE------EEEEcCCCCEEEEEeCC-
Q psy519          180 PVLSIAFSPCGKYLASGGEDGLVLTHELTT----------GRVISRFHLQEHEPVT------SLVWSVTGETLVTGSLT-  242 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~------~~~~~~~~~~l~~~~~d-  242 (351)
                      ....++|+|+|...++.-.|++|..||+..          .+.+.++..+  ..+-      .+.++|||++|+++..- 
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~--yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH--YQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS--SCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc--cccccceeccceEeCCCCCEEEEcCCCC
Confidence            578999999994444556699999999976          5566666542  2221      22457899999987652 


Q ss_pred             -CeE-----------EEEeCCCCc
Q psy519          243 -GTV-----------QFYGWPSAS  254 (351)
Q Consensus       243 -g~i-----------~i~~~~~~~  254 (351)
                       .++           .++|+..++
T Consensus       410 kdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          410 KDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccccccCCCCCCCcceEEEcCCCc
Confidence             234           889996554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=1.4e-09  Score=92.41  Aligned_cols=214  Identities=16%  Similarity=0.032  Sum_probs=143.6

Q ss_pred             cEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC
Q psy519           26 DVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP  101 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~  101 (351)
                      ..|..++.++.+..++....    ...+...+.++...+++.+..++.++.+..+|.+ ++....+......+.++...+
T Consensus       108 ~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~  186 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK  186 (330)
T ss_dssp             TEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred             CEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC
Confidence            34556667788888887622    2223334556667778888778888999999988 777766665555666777777


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCE
Q psy519          102 KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV  181 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  181 (351)
                      ++.+.+ ++  +.+..+| .+++...........+.++...++|.+.+ ++.   ++.+..+|. +++.+..+......+
T Consensus       187 ~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~---~~gl~~~~~-~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          187 DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSL---DGHLYAINP-DGTEKWRFKTGKRIE  257 (330)
T ss_dssp             TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EET---TTEEEEECT-TSCEEEEEECSSCCC
T ss_pred             CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcC---CCeEEEECC-CCCEeEEeeCCCCcc
Confidence            776544 44  7789999 77777766655556677888888775544 445   678888874 566665555444334


Q ss_pred             EEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       182 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      ..+...+++ .|.+++.+|.+..+|. +++....+.. ....+.++...+++. |..++.+|.+++...+..
T Consensus       258 ~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          258 SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET-GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             ccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc-CCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            445555555 4666777888999996 6776666653 234566777777776 556788899988876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.23  E-value=4.9e-09  Score=84.14  Aligned_cols=170  Identities=12%  Similarity=0.117  Sum_probs=120.0

Q ss_pred             eeeEEeeCCCCC--eEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           82 YPLRIFVGHKQD--VTCARFHPKITYIGTGSYDK--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        82 ~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+.+|+.+++.+..+... .........++++.|.....  .+
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw--~~  106 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTW--KN  106 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEES--SS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEe--eC
Confidence            345555 35443  4789998 667677777666  8999999999998887543 33333333334556555543  28


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCCC
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVTG  233 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~  233 (351)
                      +.+.+||..+.+.+.++..... -..++  +|++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CEEEEEECccCcEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            8999999999999998865332 23344  5677777777788899999999999988876432    345668886 67


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeee
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGIGV  260 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~~~  260 (351)
                      ++.+..-.++.|.+.|..+++.+....
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEE
Confidence            655555568899999999999887633

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.22  E-value=1.3e-09  Score=92.53  Aligned_cols=212  Identities=15%  Similarity=0.033  Sum_probs=141.5

Q ss_pred             cEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEe
Q psy519           26 DVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH  100 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~  100 (351)
                      ..|..++.++.|..|| .++     ...+...+.++...+++.+..++.+  +..+|. +++....+...........+.
T Consensus        31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~  106 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF  106 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE
T ss_pred             CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE
Confidence            3466667788899999 554     2233445677888888888555555  888886 666554443333222333333


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC
Q psy519          101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP  180 (351)
Q Consensus       101 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  180 (351)
                        +..++.++.++.+..+|.. ++...........+.++...+++.+ ..++.   ++.|..+|.. ++....+......
T Consensus       107 --~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~---~~~l~~~d~~-g~~~~~~~~~~~~  178 (330)
T 3hxj_A          107 --EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSN---DNYLYAINPD-GTEKWRFKTNDAI  178 (330)
T ss_dssp             --TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECT---TSEEEEECTT-SCEEEEEECSSCC
T ss_pred             --CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcC---CCEEEEECCC-CCEeEEEecCCCc
Confidence              4567778888999999988 7776666555555666777777764 44555   7999999988 7777666655556


Q ss_pred             EEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      +..+...+++.+. +++  +.+..+| .+++....+.. ....+.++...++|. |..++.++.+..++. +++.+
T Consensus       179 ~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~  247 (330)
T 3hxj_A          179 TSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEK  247 (330)
T ss_dssp             CSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEE
T ss_pred             eeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEe
Confidence            6677777777754 444  7799999 77777666542 335677888888876 455667788888874 44444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.21  E-value=4.4e-09  Score=84.40  Aligned_cols=179  Identities=11%  Similarity=0.008  Sum_probs=129.3

Q ss_pred             ceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCe--EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q psy519           52 TVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDV--TCARFHPKITYIGTGSYDKAVRLWSITDGASVRV  128 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  128 (351)
                      -...+.|+. +.+ ++.+.+|.|+++|+++++.+..+ -.. ..  -.+++..+ ++.+..-.++.+.+||..+.+.+.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEE
Confidence            346788875 455 88899999999999999988776 222 33  33555432 3444455689999999999999988


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      +.-... -..++  ++++.|+.+..   ++.|.++|..+.+.+..+....     ..+..+.|. +|+..+..-.+..|.
T Consensus       132 i~~~~e-GwGLt--~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYSGE-GWGLC--YWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECSSC-CCCEE--EETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCCCc-eeEEe--cCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence            864322 23344  57888888765   8899999999998888765322     245677877 777666665688999


Q ss_pred             EEEcCCCcEEEEeecc------------CCCCEEEEEEcCCCCEEEEEeC
Q psy519          204 THELTTGRVISRFHLQ------------EHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      +.|.++++.+..+...            ...-.+.++|+|+++.|++.+.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999999888653            1136789999998766655543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=1.8e-07  Score=78.63  Aligned_cols=224  Identities=9%  Similarity=0.039  Sum_probs=141.4

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEe-CC-C-cEEEEeCCCCeeeE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGS-RD-T-TARLWSLEQMYPLR   85 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~-~d-~-~i~vw~~~~~~~~~   85 (351)
                      .....++|+|+  +.++++-..++.|..++....   ..........+++.++|+++.+. .. + .|..++..+++...
T Consensus        32 ~~pegia~~~~--g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPD--GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTT--SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCC--CCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34567899999  997777767889999987655   11223468899999999884443 32 2 47777877776543


Q ss_pred             EeeC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eEEe---------ccCCCCeEEEEEccCCCEEEEEecC
Q psy519           86 IFVG-HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS-VRVF---------SDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        86 ~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      .... .......++..+++..+++...++.|+.+|..+++. +...         .........+  +|+++.|+++...
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            3221 222345555556555555555688999999876431 1110         0111234555  7888877776542


Q ss_pred             CCCCeEEEEEccC-Cce--eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEc
Q psy519          155 SYDKAVRLWSITD-GAS--VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWS  230 (351)
Q Consensus       155 ~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~  230 (351)
                        .+.|..||+.. ++.  ...+... .....++++++|+++++....+.|.++|.. ++......... ...+.+++|.
T Consensus       188 --~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          188 --KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             --TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             --CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence              68899999874 321  1222111 234678999999887776677889999975 65533222222 2568999998


Q ss_pred             ---CCCCEEEEEeCCC
Q psy519          231 ---VTGETLVTGSLTG  243 (351)
Q Consensus       231 ---~~~~~l~~~~~dg  243 (351)
                         |+++.|++++..+
T Consensus       264 g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          264 QTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CSTTTTTEEEEEECTT
T ss_pred             cccCCCCEEEEECCCC
Confidence               8888777766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.15  E-value=7e-08  Score=76.80  Aligned_cols=182  Identities=10%  Similarity=0.004  Sum_probs=130.2

Q ss_pred             cceEEEEECCCCcE-EEEeCC--CcEEEEeCCCCeeeEEeeCCCCC-eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q psy519           51 MTVWSVEACSKGLA-LTGSRD--TTARLWSLEQMYPLRIFVGHKQD-VTCARFHPKITYIGTGSYDKAVRLWSITDGASV  126 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  126 (351)
                      .-...+.|++ +.+ .+.+.+  ..|+++|+++++.+......... --.++... ++.....-.++.+.+||..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEE
Confidence            4456888987 555 776765  48999999999998877543322 13344442 334444556899999999999999


Q ss_pred             EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC-----CCEEEEEECCCCcEEEEEcCCCe
Q psy519          127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----SPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      .++...... ..++  +++..|+++..   ++.|.++|..+.+.+..++...     ..+..+.|. +|+.++..-.+..
T Consensus        99 ~ti~~~~~G-wglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X           99 ARFRYPGEG-WALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEEECSSCC-CEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEeCCCCc-eEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence            988743322 3444  57777777765   8899999999998887775422     345667776 6776666656789


Q ss_pred             EEEEEcCCCcEEEEeeccC------------CCCEEEEEEcCCCCEEEEEeC
Q psy519          202 VLTHELTTGRVISRFHLQE------------HEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      |.+.|.++++.+..+....            ..-.+.++|+|+++.|++.+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999999998886431            135789999998877766654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=2.3e-08  Score=80.27  Aligned_cols=165  Identities=13%  Similarity=0.083  Sum_probs=118.5

Q ss_pred             eeeEEeeCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeE--EEEEccCCCEEEEEecCCCC
Q psy519           82 YPLRIFVGHKQ--DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL--SIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        82 ~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +.+.++ .|..  -...+.|+. +.++.+.+.+|.|+.+|+.+++.+..+ - .....  .+++  +++.|.....  .+
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw--~~  115 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTW--TE  115 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEES--SS
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEc--cC
Confidence            344555 3443  347888884 567778888899999999999988877 2 23333  3555  4444444432  18


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCCC
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVTG  233 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~  233 (351)
                      +.+.+||..+.+.+.++.... .-..++  +|++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG  191 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG  191 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence            999999999999999886532 223444  5688888888889999999999999988865433    245778887 77


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeee
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ++.+..-.++.|.+.|..+++.+..
T Consensus       192 ~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          192 VIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             EEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcEEEE
Confidence            6555555688999999999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=1.7e-08  Score=94.02  Aligned_cols=243  Identities=12%  Similarity=0.058  Sum_probs=157.2

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCC--ccceEE-EEECCCCcEEEEeC------CCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGH--DMTVWS-VEACSKGLALTGSR------DTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~--~~~i~~-~~~~~~~~~~~~~~------d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..+++++.++.+..+|..++       ....  ...+.+ ... .++.++.+..      ++.|+.+|.++++.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            556777788899999998766       1000  011110 011 1455554432      5899999999999988775


Q ss_pred             CCC---C----------------------------CeEEEEEeCCCCEEEEEeCCC-------------------cEEEE
Q psy519           89 GHK---Q----------------------------DVTCARFHPKITYIGTGSYDK-------------------AVRLW  118 (351)
Q Consensus        89 ~~~---~----------------------------~i~~i~~~~~~~~l~~~~~dg-------------------~i~i~  118 (351)
                      ...   .                            .-..+++.|+...++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            310   0                            012367888888888887765                   39999


Q ss_pred             eCCCCceeEEecc--CC-------CCeEEEEEccCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCC--------
Q psy519          119 SITDGASVRVFSD--HV-------SPVLSIAFSPCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHV--------  178 (351)
Q Consensus       119 d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------  178 (351)
                      |.++++.+..++.  |.       .+.....+..+|+   .++.++.   +|.++++|.++|+.+...+...        
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPK---NGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT---TSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECC---CCEEEEEECCCCCEeccccccccccccccc
Confidence            9999998877753  21       2333333334665   5777777   9999999999998874432111        


Q ss_pred             ----CCE------------------------EEEEECCCCcEEEEEc---------------------------------
Q psy519          179 ----SPV------------------------LSIAFSPCGKYLASGG---------------------------------  197 (351)
Q Consensus       179 ----~~i------------------------~~~~~~~~~~~l~~~~---------------------------------  197 (351)
                          .++                        ..++++|+..++++..                                 
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence                000                        1257777766655421                                 


Q ss_pred             ---CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------eeEEec
Q psy519          198 ---EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYP------RCAAQP  268 (351)
Q Consensus       198 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~~s~  268 (351)
                         .+|.|..||+.+++.+-++...  .+.....+...+.++++++.||.++.||.++++.+......      .+.+..
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~  510 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence               2378999999999987766532  23333444556888999999999999999999988664332      244456


Q ss_pred             CCcee
Q psy519          269 VGFEA  273 (351)
Q Consensus       269 ~~~~~  273 (351)
                      +|+..
T Consensus       511 ~G~~y  515 (668)
T 1kv9_A          511 AGRQY  515 (668)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            66643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.09  E-value=4.8e-08  Score=89.25  Aligned_cols=229  Identities=14%  Similarity=0.069  Sum_probs=147.8

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCCcc--ceEE-EEECCCCcEEEEeC------CCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGHDM--TVWS-VEACSKGLALTGSR------DTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~~~--~i~~-~~~~~~~~~~~~~~------d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..+++++.++.+..+|..++       ...+..  .+.+ ... .++.++.++.      ++.|..+|.++++.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            456777778888988888766       111110  1111 011 1566655554      7899999999999887765


Q ss_pred             CCCCC-------------------------------------e-EEEEEeCCCCEEEEEeCC----------------Cc
Q psy519           89 GHKQD-------------------------------------V-TCARFHPKITYIGTGSYD----------------KA  114 (351)
Q Consensus        89 ~~~~~-------------------------------------i-~~i~~~~~~~~l~~~~~d----------------g~  114 (351)
                      .....                                     + ..+++.++...++.+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                     0 135667766677666532                35


Q ss_pred             EEEEeCCCCceeEEeccC----------CCCeEEEEEccCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCC---
Q psy519          115 VRLWSITDGASVRVFSDH----------VSPVLSIAFSPCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHV---  178 (351)
Q Consensus       115 i~i~d~~~~~~~~~~~~~----------~~~i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---  178 (351)
                      |..+|.++++.+..++..          ..++. +...++|+   .++.++.   +|.++++|.++++.+...+...   
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDR---NGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECT---TSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCC---CcEEEEEECCCCCEEeeecccCCcc
Confidence            999999999988776532          12222 23334674   5667777   9999999999998877654221   


Q ss_pred             ----------CCE--------------------------EEEEECCCCcEEEEEc-------------------------
Q psy519          179 ----------SPV--------------------------LSIAFSPCGKYLASGG-------------------------  197 (351)
Q Consensus       179 ----------~~i--------------------------~~~~~~~~~~~l~~~~-------------------------  197 (351)
                                .++                          ..++++|+..++++.+                         
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                      111                          2357788777776653                         


Q ss_pred             ------------CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy519          198 ------------EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV  260 (351)
Q Consensus       198 ------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  260 (351)
                                  .+|.+..||+.+++.+-++....  .+....+...+..++.++.||.|+.+|.++++.+-...
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence                        34789999999999887765332  22222233356778889999999999999999886543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.06  E-value=8.1e-08  Score=87.82  Aligned_cols=242  Identities=14%  Similarity=0.032  Sum_probs=151.8

Q ss_pred             EEEecCCCceEEEecCCc-------cCCCc--cceEE-EEECCCCcEEEEe------CCCcEEEEeCCCCeeeEEeeCCC
Q psy519           28 LANLESQKNLQSRYLPYY-------TSGHD--MTVWS-VEACSKGLALTGS------RDTTARLWSLEQMYPLRIFVGHK   91 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~-------~~~~~--~~i~~-~~~~~~~~~~~~~------~d~~i~vw~~~~~~~~~~~~~~~   91 (351)
                      |++++.++.+.-+|..++       ...+.  ..+.+ ... .++.+++++      .++.|+.+|.++++.+..+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            777778888888888766       11110  01111 011 145665554      37999999999999887765322


Q ss_pred             CC-------------------------------------e-EEEEEeCCCCEEEEEeCC----------------CcEEE
Q psy519           92 QD-------------------------------------V-TCARFHPKITYIGTGSYD----------------KAVRL  117 (351)
Q Consensus        92 ~~-------------------------------------i-~~i~~~~~~~~l~~~~~d----------------g~i~i  117 (351)
                      ..                                     + ..+++.++...++.+..+                +.|.-
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            11                                     0 134566777777777655                37999


Q ss_pred             EeCCCCceeEEeccCC----------CCeEEEEEc-cCC---CEEEEEecCCCCCeEEEEEccCCceeEEeccCC-----
Q psy519          118 WSITDGASVRVFSDHV----------SPVLSIAFS-PCG---KYLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----  178 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----  178 (351)
                      +|.++++.+..++...          .++. +... .+|   ..++.++.   +|.++++|.++++.+.......     
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~---~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR---NGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT---TSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECC---CcEEEEEECCCCCEeecccccCCcccc
Confidence            9999999887765322          1222 2222 467   45666777   9999999999998876654211     


Q ss_pred             --------CCE--------------------------EEEEECCCCcEEEEEc---------------------------
Q psy519          179 --------SPV--------------------------LSIAFSPCGKYLASGG---------------------------  197 (351)
Q Consensus       179 --------~~i--------------------------~~~~~~~~~~~l~~~~---------------------------  197 (351)
                              .++                          ..++++|+..++++..                           
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                    111                          1356667665554421                           


Q ss_pred             ------------CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec----
Q psy519          198 ------------EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY----  261 (351)
Q Consensus       198 ------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~----  261 (351)
                                  ..|.+..||+.+++.+-+.....  +...-.....+.+++.++.||.++.||.++++.+-....    
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~  516 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence                        34789999999998876664322  111111223567788899999999999999998865433    


Q ss_pred             --ceeEEecCCceeeee
Q psy519          262 --PRCAAQPVGFEAATL  276 (351)
Q Consensus       262 --~~~~~s~~~~~~~~~  276 (351)
                        ..+.+..+|+..+..
T Consensus       517 ~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          517 IGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             EeccEEEEeCCEEEEEE
Confidence              235556677644333

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.06  E-value=7.3e-07  Score=71.96  Aligned_cols=198  Identities=11%  Similarity=0.097  Sum_probs=135.4

Q ss_pred             CCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           47 SGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFVG-HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      .+-...+..++|+|++ .+ ++...++.|...|.. ++.++.+.- .....-.+++.+++.++++.-.++.+.++++...
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            3445679999999875 45 667788999999998 777777642 2356788999988877676666788999987654


Q ss_pred             ce---eEEec------cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC---CceeEEec-------cCCCCEEEE
Q psy519          124 AS---VRVFS------DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD---GASVRVFS-------DHVSPVLSI  184 (351)
Q Consensus       124 ~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~---~~~~~~~~-------~~~~~i~~~  184 (351)
                      ..   +....      ........++|+|+++.|+++..   .....+|.++.   ...+....       .+...+..+
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E---~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE---KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE---SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC---cCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            42   12221      12345689999999988888776   44455555531   11122221       123456899


Q ss_pred             EECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--------CCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          185 AFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--------EPVTSLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       185 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      +++| .+++++....+..+.++|.. ++.+..+.+...        .....++|.++|++. ..++.+.++.|.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence            9999 45566677778889999975 667766665532        378999999999844 4477777777754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.05  E-value=6.9e-06  Score=78.42  Aligned_cols=249  Identities=7%  Similarity=-0.069  Sum_probs=165.9

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----cC-------CCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TS-------GHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~-------~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      ...|.++...++  |.+. .|+.++-|..++....    ..       -....|.++...++|.+-.|..++-|..|+..
T Consensus       309 ~~~i~~i~~D~~--g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          309 QRSVRSIFMDSQ--GGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SSCEEEEEECTT--SCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTT
T ss_pred             CCcEEEEEEeCC--cCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC
Confidence            357899999888  7744 4556666888876543    10       12456999999999999778888889999988


Q ss_pred             CCeeeEEeeC--------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec----cCCCCeEEEEEccCCCE
Q psy519           80 QMYPLRIFVG--------HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS----DHVSPVLSIAFSPCGKY  147 (351)
Q Consensus        80 ~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~  147 (351)
                      +++.......        ....|.++...++++.|..|+.++-+..+|..+++......    .....|.++...++|++
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence            7654432211        23578999998888857777877789999988776443321    13457899999888876


Q ss_pred             EEEEecCCCCCeEEEEEccCCceeEEec------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec---
Q psy519          148 LASGGTGSYDKAVRLWSITDGASVRVFS------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL---  218 (351)
Q Consensus       148 l~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  218 (351)
                      .+..     .+.+..||..+++......      .....|.++...++|.+.+... . -+..||..+++.  .+..   
T Consensus       466 wigt-----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~  536 (795)
T 4a2l_A          466 WLGT-----LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILP  536 (795)
T ss_dssp             EEEE-----SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSC
T ss_pred             EEEe-----cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCC
Confidence            5543     3458899987664332211      1235789999998888666554 4 488899877655  3321   


Q ss_pred             ---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--------eecceeEEecCCcee
Q psy519          219 ---QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       219 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~~~~~s~~~~~~  273 (351)
                         .....|.++..+++|.+.++.. . -+..||..+++....        ..+.++...++|...
T Consensus       537 ~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW  600 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLW  600 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEE
Confidence               1124689999999998665543 3 578888776654432        123345555566543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.04  E-value=2.8e-07  Score=73.35  Aligned_cols=169  Identities=10%  Similarity=0.046  Sum_probs=118.4

Q ss_pred             eeeEEeeCCC--CCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           82 YPLRIFVGHK--QDVTCARFHPKITYIGTGSYD--KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        82 ~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +.+..+ .|.  .-...+.|++ +.++.+.+.+  ..|+.+|+.+++.+....-.. ........+.++.|.....  .+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw--~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTW--RN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEES--SS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEe--eC
Confidence            345555 454  3467899986 5566666665  489999999999988775332 2222323334555554432  18


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC----CCEEEEEEcCCC
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH----EPVTSLVWSVTG  233 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~  233 (351)
                      +.+.+||.++.+.+.++...... ..++  ++++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence            99999999999999988654322 3454  4677777777789999999999999888876432    356677776 66


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeee
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGIG  259 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~~  259 (351)
                      +..+..-.+..|.+.|..+++.+...
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEE
Confidence            65555556789999999999988763

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=1.7e-07  Score=87.30  Aligned_cols=264  Identities=13%  Similarity=0.032  Sum_probs=164.2

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCc----------cce-EEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHD----------MTV-WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~----------~~i-~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      +..|++++.++.|.-+|..++     .....          ..+ ..++. .+++++.++.|+.|..+|.++|+.+..+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            445666666777877777665     10000          000 11222 24566788889999999999999988775


Q ss_pred             CCC----CCeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEeccCC---C--------------------
Q psy519           89 GHK----QDVTC-ARFHPKITYIGTGSY------DKAVRLWSITDGASVRVFSDHV---S--------------------  134 (351)
Q Consensus        89 ~~~----~~i~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---~--------------------  134 (351)
                      ...    ..+.+ .... ++ .++++..      +|.|+.+|.++|+.+..+....   .                    
T Consensus       145 ~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             CSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            421    11111 1111 33 4555433      5899999999999887764210   0                    


Q ss_pred             --------CeEEEEEccCCCEEEEEecCCCCC-------------------eEEEEEccCCceeEEecc--CC-------
Q psy519          135 --------PVLSIAFSPCGKYLASGGTGSYDK-------------------AVRLWSITDGASVRVFSD--HV-------  178 (351)
Q Consensus       135 --------~i~~~~~~~~~~~l~~~~~~~~d~-------------------~i~i~d~~~~~~~~~~~~--~~-------  178 (351)
                              ....++++|+...++.+..   ++                   .|..+|.++++.+-.++.  |.       
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~---~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTG---NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECC---CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCC---CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                    1124688888888888765   54                   499999999998877754  21       


Q ss_pred             CCEEEEEECCCCc---EEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----------CC---------------------
Q psy519          179 SPVLSIAFSPCGK---YLASGGEDGLVLTHELTTGRVISRFHLQEH-----------EP---------------------  223 (351)
Q Consensus       179 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~---------------------  223 (351)
                      .+.....+..+|+   .++.++.+|.++++|..+|+.+........           .+                     
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G  379 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence            2333333334665   688899999999999999998854432210           00                     


Q ss_pred             ---EEEEEEcCCCCEEEEEe------------------------------------CCCeEEEEeCCCCceeeeee----
Q psy519          224 ---VTSLVWSVTGETLVTGS------------------------------------LTGTVQFYGWPSASKIGIGV----  260 (351)
Q Consensus       224 ---v~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~~~~~~~~~~~~~----  260 (351)
                         -..++++|+..++++..                                    .+|.|..||+.+++.+-...    
T Consensus       380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~  459 (668)
T 1kv9_A          380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH  459 (668)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC
Confidence               01267788776665421                                    24889999999998764322    


Q ss_pred             cceeEEecCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          261 YPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       261 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                      .....+...+..+.++..++   .++.++..+|+...
T Consensus       460 ~~~~~~~t~gg~vf~g~~dg---~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          460 WNGGTLSTAGNLVFQGTAAG---QMHAYSADKGEALW  493 (668)
T ss_dssp             CCCCEEEETTTEEEEECTTS---EEEEEETTTCCEEE
T ss_pred             CcCceeEeCCCEEEEECCcc---cchhhhhhcChhhe
Confidence            22345556677777766555   55666666666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.00  E-value=2.2e-06  Score=72.50  Aligned_cols=200  Identities=6%  Similarity=-0.069  Sum_probs=126.1

Q ss_pred             ceEEEEECCCCc-EEEEeCCCcEEEEeCCCCeeeEEeeC--------------------CCCCeEEEEEeC-CCCEEEEE
Q psy519           52 TVWSVEACSKGL-ALTGSRDTTARLWSLEQMYPLRIFVG--------------------HKQDVTCARFHP-KITYIGTG  109 (351)
Q Consensus        52 ~i~~~~~~~~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~--------------------~~~~i~~i~~~~-~~~~l~~~  109 (351)
                      ...+++|.+++. +.++..++.|..|+..+++.. .+..                    ....+.++++.+ +++ |+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            345688999998 588888999999998765433 2210                    013578899998 555 5555


Q ss_pred             eCCCcEEEEeCCCCceeEEec---c-CCCCeEEEEEcc-CCCEEEEEecC--------------CCCCeEEEEEccCCce
Q psy519          110 SYDKAVRLWSITDGASVRVFS---D-HVSPVLSIAFSP-CGKYLASGGTG--------------SYDKAVRLWSITDGAS  170 (351)
Q Consensus       110 ~~dg~i~i~d~~~~~~~~~~~---~-~~~~i~~~~~~~-~~~~l~~~~~~--------------~~d~~i~i~d~~~~~~  170 (351)
                      ...+.+..+|..+++......   + .......+++.+ +|++.++-...              ..++.|..||..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            445568889977554222111   1 123468899999 88776654220              1136789999876654


Q ss_pred             eEEeccCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCc--EEEEeeccCCCCEEEEEEcCCCCEEEEEeC------
Q psy519          171 VRVFSDHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGR--VISRFHLQEHEPVTSLVWSVTGETLVTGSL------  241 (351)
Q Consensus       171 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------  241 (351)
                      ...... ......++++|++++|+++ +.++.|..|++....  ....+. .... ...++++++|++.++...      
T Consensus       178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEECCCCCEEEEecCcccccc
Confidence            332222 1234579999999866655 566899999987421  112221 1223 788999999987666544      


Q ss_pred             ----CCeEEEEeCCCCceee
Q psy519          242 ----TGTVQFYGWPSASKIG  257 (351)
Q Consensus       242 ----dg~i~i~~~~~~~~~~  257 (351)
                          .+.|..+|.. ++.+.
T Consensus       255 ~~~~~~~v~~~d~~-G~~~~  273 (322)
T 2fp8_A          255 HGRVDPKGIKFDEF-GNILE  273 (322)
T ss_dssp             TSCEEEEEEEECTT-SCEEE
T ss_pred             cCCCccEEEEECCC-CCEEE
Confidence                4678888864 55443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.98  E-value=6.1e-06  Score=70.56  Aligned_cols=235  Identities=8%  Similarity=-0.047  Sum_probs=145.0

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCeeeEEee
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      .|.+..++  .. |+.+ ....|+..++...    .......+..++|.+. +.+ .+-...+.|..+++........+.
T Consensus        37 ~C~~~~~~--~~-ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           37 SCKALGPE--PV-LLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             CEEESSSC--CE-EEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             cccccccC--ce-eEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            34444444  33 3333 2345777777654    1122344688999865 455 555667889999988765444333


Q ss_pred             CCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC-CeEEEEEcc
Q psy519           89 GHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD-KAVRLWSIT  166 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d-~~i~i~d~~  166 (351)
                      ........+++.+.+ +++++-...+.|.+.++........+.........++++|.+..|+.+..+  . +.|..+++.
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~--~~~~I~r~~~d  190 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEASSMD  190 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS--SSCEEEEEETT
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC--CCCEEEEEeCC
Confidence            333455789998754 455555567889999987544333333344567899999977776666542  3 789999876


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEE-EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLAS-GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      ...........-.....++++|++..|+. -...+.|..+|+..... ..+..........+++. .+.+.++-...+.|
T Consensus       191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  268 (349)
T 3v64_C          191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  268 (349)
T ss_dssp             SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence            43322222223445789999986665554 45567899999864332 22222233567888883 44555555567889


Q ss_pred             EEEeCCCCceee
Q psy519          246 QFYGWPSASKIG  257 (351)
Q Consensus       246 ~i~~~~~~~~~~  257 (351)
                      ..++..+++...
T Consensus       269 ~~~~~~~G~~~~  280 (349)
T 3v64_C          269 NSANKFTGKNQE  280 (349)
T ss_dssp             EEEETTTCCSCE
T ss_pred             EEEEccCCCccE
Confidence            888866665443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.98  E-value=1.6e-05  Score=75.91  Aligned_cols=232  Identities=9%  Similarity=-0.002  Sum_probs=157.8

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----c--------CCCccceEEEEECCCCcEEEEeCCCcEEEEeC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----T--------SGHDMTVWSVEACSKGLALTGSRDTTARLWSL   78 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~--------~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~   78 (351)
                      ...|.++...++  |.+.+.. .+ -|.+|+....    .        .-....|.++...++|.+-.|+.++-|..++.
T Consensus       262 ~~~i~~i~~d~~--g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          262 SNYIRSLAMDSQ--NRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHP  337 (795)
T ss_dssp             CSBEEEEEECTT--SCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECG
T ss_pred             CCeEEEEEEcCC--CCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCC
Confidence            356899999888  7765544 44 4788887654    1        11246799999999999988888888999987


Q ss_pred             CCCeeeEEee------CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc--------CCCCeEEEEEccC
Q psy519           79 EQMYPLRIFV------GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD--------HVSPVLSIAFSPC  144 (351)
Q Consensus        79 ~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~  144 (351)
                      .+.+......      -....|.++...++++ |..|+.++-|..||..+++.......        ....|.+++..++
T Consensus       338 ~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          338 IRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             CcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            6554322111      1235689998888776 55577777799999877654332211        2367899999888


Q ss_pred             CCEEEEEecCCCCCeEEEEEccCCceeEEec----cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-
Q psy519          145 GKYLASGGTGSYDKAVRLWSITDGASVRVFS----DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-  219 (351)
Q Consensus       145 ~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  219 (351)
                      ++.|..|+.   ++.|..||.++++......    .....|.++...++|.+.+.. .+| +..||..+++... +... 
T Consensus       417 g~~lWigt~---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~-~~~~~  490 (795)
T 4a2l_A          417 KSLVYIGTH---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTT-IEKEK  490 (795)
T ss_dssp             TTEEEEEET---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEE-CCBCT
T ss_pred             CCEEEEEeC---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEE-ccccc
Confidence            885666666   6789999988776433221    134578999988888765554 444 8889987765432 2211 


Q ss_pred             -----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          220 -----EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       220 -----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                           ....|.++...++|.+.+...  +-+..|+..+++.
T Consensus       491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence                 125689999999988666554  4588888766554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.97  E-value=9.9e-07  Score=74.04  Aligned_cols=220  Identities=12%  Similarity=0.053  Sum_probs=135.4

Q ss_pred             cceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceeE
Q psy519           51 MTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD--KAVRLWSITDGASVR  127 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~  127 (351)
                      .....++|++++.+ ++-..++.|..||.... ....+. .......+++.++++++++....  ..|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999988 55557899999998754 333332 23468899999999866655432  247777877776543


Q ss_pred             Eecc-CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce-eEEec---------cCCCCEEEEEECCCCcEEEEE
Q psy519          128 VFSD-HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS-VRVFS---------DHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       128 ~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~~~~~~~l~~~  196 (351)
                      .... .......++..+++..+++-..   ++.|+.+|...++. +....         ..-.....+  +|+++.|+.+
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~---~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSY---RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETT---TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECC---CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence            3221 2233455665655544444334   78899999765421 21110         111234555  7788766554


Q ss_pred             -cCCCeEEEEEcCC-CcE--EEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeE
Q psy519          197 -GEDGLVLTHELTT-GRV--ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCA  265 (351)
Q Consensus       197 -~~dg~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~  265 (351)
                       ...+.|..|++.. ++.  ...+.  .......++++++|++.++....+.|.+++.. ++....       .....++
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a  261 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  261 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence             5578899999864 321  11111  11346779999999987777778899999975 544221       2234577


Q ss_pred             Ee---cCCceeeeeeccc
Q psy519          266 AQ---PVGFEAATLAANS  280 (351)
Q Consensus       266 ~s---~~~~~~~~~~~~~  280 (351)
                      |.   |++..+.+....+
T Consensus       262 ~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          262 FGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ECCSTTTTTEEEEEECTT
T ss_pred             EecccCCCCEEEEECCCC
Confidence            77   7777665555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.95  E-value=6.3e-08  Score=90.29  Aligned_cols=261  Identities=14%  Similarity=0.046  Sum_probs=151.5

Q ss_pred             EeeecC-CccccEEEEecCCC-----------ceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeC-CCcE
Q psy519           16 QNSFKP-ETVEDVLANLESQK-----------NLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSR-DTTA   73 (351)
Q Consensus        16 ~~~~sp-~~~~~~l~~~~~~~-----------~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~-d~~i   73 (351)
                      ++++.| +  +++++.|+.+.           .+.+||..+.        ...+.....++++..++++ +.|+. +..+
T Consensus       190 ~~av~~~~--g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEecC--CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            556677 7  88888886542           5788988776        1112333445677788888 77774 5689


Q ss_pred             EEEeCCCCeeeEEeeCCCC-CeEEEEEeCCCCEEEEEe-CC-----CcEEEEeCCCCceeEEe----ccCCCCeEEEEEc
Q psy519           74 RLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGS-YD-----KAVRLWSITDGASVRVF----SDHVSPVLSIAFS  142 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~i~~~~~~  142 (351)
                      .+||..+.+-...-..+.. .-.+++..++++.++.|+ .+     ..+.+||..+.+....-    ......-....+.
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            9999987654322211111 123455667899999988 34     57999999887644321    0000000001122


Q ss_pred             cCCCEEEEEecC------CCCCeEEEEEccCCceeEEeccCC---------CCEEEEEECC-CCcEEEEEcCCC------
Q psy519          143 PCGKYLASGGTG------SYDKAVRLWSITDGASVRVFSDHV---------SPVLSIAFSP-CGKYLASGGEDG------  200 (351)
Q Consensus       143 ~~~~~l~~~~~~------~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~l~~~~~dg------  200 (351)
                      .++..++.++..      .....+..||..+..-......+.         ..-.++.|.. ++++++.|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            344555555430      003467889987765333222111         1223444543 778888887532      


Q ss_pred             -----eEEEEEcCCCcEEEEe--eccCCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEEeCCCCceeeee---
Q psy519          201 -----LVLTHELTTGRVISRF--HLQEHEPVTSLVWSVTGETLVTGSLT-----------GTVQFYGWPSASKIGIG---  259 (351)
Q Consensus       201 -----~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~---  259 (351)
                           .+.+||..+.+.....  .......-.+++..|++++++.|+.+           ..+.+||..+.+-....   
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence                 6788888776644332  22222223455677899999998754           46899998776543321   


Q ss_pred             ---ecce-eEEecCCceeeeeec
Q psy519          260 ---VYPR-CAAQPVGFEAATLAA  278 (351)
Q Consensus       260 ---~~~~-~~~s~~~~~~~~~~~  278 (351)
                         ..++ ..+.|+++.++.++.
T Consensus       508 ~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccccccHhhcCCCcEEEecCCC
Confidence               1223 345689998887774

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.94  E-value=2.6e-07  Score=87.47  Aligned_cols=240  Identities=12%  Similarity=0.047  Sum_probs=134.9

Q ss_pred             ceEEeeec-CCccccEEEEecC-CC----ceEEEecCCc-c--CCC-ccceEEEEECCCCcE-EEEeCC-----CcEEEE
Q psy519           13 HFIQNSFK-PETVEDVLANLES-QK----NLQSRYLPYY-T--SGH-DMTVWSVEACSKGLA-LTGSRD-----TTARLW   76 (351)
Q Consensus        13 ~v~~~~~s-p~~~~~~l~~~~~-~~----~i~i~~~~~~-~--~~~-~~~i~~~~~~~~~~~-~~~~~d-----~~i~vw   76 (351)
                      .+...+|| ||  |++||.+.. +|    .|+++++.++ .  ..+ ......+.|+|||+. +....+     ..|+++
T Consensus       175 ~~~~~~~S~PD--G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPE--HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTT--TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCC--CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67789999 99  999886543 22    4999998765 2  111 122336789999965 444433     368888


Q ss_pred             eCCCCee--eEEee-CCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCc-ee--EEe-ccCCCCeEEEEEccCCC
Q psy519           77 SLEQMYP--LRIFV-GHKQDVTCARFHPKITYIGTGSY---DKAVRLWSITDGA-SV--RVF-SDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        77 ~~~~~~~--~~~~~-~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~i~~~~~~~~~~  146 (351)
                      ++.+++.  ...+. ........+.|+|||++|+..+.   ...|+++|+.++. ..  ..+ .........+.|+. |.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence            8887642  23333 22234567899999998877653   3468889988752 22  333 33344555666554 55


Q ss_pred             EEEEEecC--CCCCeEEEEEccCCceeEE-eccCCC--CEEEEEECCCCcEEEEEcCCCe--EEEEEc-------CCCcE
Q psy519          147 YLASGGTG--SYDKAVRLWSITDGASVRV-FSDHVS--PVLSIAFSPCGKYLASGGEDGL--VLTHEL-------TTGRV  212 (351)
Q Consensus       147 ~l~~~~~~--~~d~~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~-------~~~~~  212 (351)
                      .|+..+..  .....|..+|+.++..... +..+..  .+..+.+. .+.++++...++.  +.++++       ..++.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~  410 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG  410 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence            55444331  1234788888765322222 222333  34455554 3345556666775  555665       33331


Q ss_pred             EEEeeccCCCCEEEEEE----cCCCC-EEEEEeCC---CeEEEEeCCCCcee
Q psy519          213 ISRFHLQEHEPVTSLVW----SVTGE-TLVTGSLT---GTVQFYGWPSASKI  256 (351)
Q Consensus       213 ~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~d---g~i~i~~~~~~~~~  256 (351)
                      ...+.+.....+..+.+    ++++. ++++.+..   ..+..+|+.+++..
T Consensus       411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            34443333233344433    34554 44443332   56888888776543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.93  E-value=7.5e-06  Score=71.03  Aligned_cols=221  Identities=7%  Similarity=-0.046  Sum_probs=141.5

Q ss_pred             CCceEEEecCCc----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCC-EE
Q psy519           34 QKNLQSRYLPYY----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT-YI  106 (351)
Q Consensus        34 ~~~i~i~~~~~~----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l  106 (351)
                      ...|+..++...    .......+..++|.+. +.+ ++-...+.|..+++........+.........+++.+.+. ++
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence            356777777654    2223345778999964 455 5656778899999887654444433334556788987544 44


Q ss_pred             EEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC-CeEEEEEccCCceeEEeccCCCCEEEEE
Q psy519          107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD-KAVRLWSITDGASVRVFSDHVSPVLSIA  185 (351)
Q Consensus       107 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~  185 (351)
                      ++-...+.|.+.++........+.........++++|.+..|+.+..+  . +.|..+++............-.....++
T Consensus       175 ~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            555556789998887544333343344667899999987777766542  3 7899999865443333333344578999


Q ss_pred             ECCCCcEEE-EEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          186 FSPCGKYLA-SGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       186 ~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ++|++..|+ +-+..+.|..+|+..... ..+..........+++ ..+.++++-...+.|..++..+++....
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            998665555 445577899999864333 2232223356788888 3445555656678899998666655443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.91  E-value=5.7e-06  Score=75.60  Aligned_cols=231  Identities=13%  Similarity=0.043  Sum_probs=145.0

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCC----CeE-EEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEe
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ----DVT-CARFHPKITYIGTGSY------DKAVRLWSITDGASVRVF  129 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~i~-~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  129 (351)
                      +++++.++.|+.+..+|.++++.+..+.....    .+. ..... ++ .+++++.      ++.|+.+|.++++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            55667888899999999999998877653220    111 11111 34 5555554      789999999999988766


Q ss_pred             ccCCCC--------------------------------------eEEEEEccCCCEEEEEecCC-------------CCC
Q psy519          130 SDHVSP--------------------------------------VLSIAFSPCGKYLASGGTGS-------------YDK  158 (351)
Q Consensus       130 ~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~~~-------------~d~  158 (351)
                      ......                                      ...++++++...++.+....             +.+
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            432110                                      01356777666776664200             013


Q ss_pred             eEEEEEccCCceeEEeccC----------CCCEEEEEECCCCc---EEEEEcCCCeEEEEEcCCCcEEEEeeccCC----
Q psy519          159 AVRLWSITDGASVRVFSDH----------VSPVLSIAFSPCGK---YLASGGEDGLVLTHELTTGRVISRFHLQEH----  221 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~----------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----  221 (351)
                      .|..+|.++++.+-.++..          ..++. +...++|+   .++.++.+|.++++|..+++.+..+.....    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            6999999999988776532          12221 22234674   577888999999999999998877654320    


Q ss_pred             --------CCE--------------------------EEEEEcCCCCEEEEEe---------------------------
Q psy519          222 --------EPV--------------------------TSLVWSVTGETLVTGS---------------------------  240 (351)
Q Consensus       222 --------~~v--------------------------~~~~~~~~~~~l~~~~---------------------------  240 (351)
                              .++                          ..++++|+..++++.+                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          2467888877776653                           


Q ss_pred             ----------CCCeEEEEeCCCCceeeeeec----ceeEEecCCceeeeeeccceeeEEEeeeceeCceEE
Q psy519          241 ----------LTGTVQFYGWPSASKIGIGVY----PRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV  297 (351)
Q Consensus       241 ----------~dg~i~i~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  297 (351)
                                .+|.|..||..+++.+-....    ....+...+..+.++..++   .+..++..+|+...
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg---~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDG---YLKALDNKDGKELW  499 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTS---EEEEEETTTCCEEE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCC---eEEEEECCCCCEEE
Confidence                      357899999999987644322    2223333455555555555   45566666666443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.90  E-value=1e-06  Score=83.47  Aligned_cols=245  Identities=10%  Similarity=-0.012  Sum_probs=137.5

Q ss_pred             CCCcc-ceEEEEEC-CCCcE-E-EEeCCC----cEEEEeCCCC-eeeEE-eeCCCCCeEEEEEeCCCCEEEEEeCC----
Q psy519           47 SGHDM-TVWSVEAC-SKGLA-L-TGSRDT----TARLWSLEQM-YPLRI-FVGHKQDVTCARFHPKITYIGTGSYD----  112 (351)
Q Consensus        47 ~~~~~-~i~~~~~~-~~~~~-~-~~~~d~----~i~vw~~~~~-~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d----  112 (351)
                      .+|.. .+....|+ |||++ + +...+|    +|+++|+.++ +.+.. +.   .....++|+||++.|+....+    
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            34443 67889999 99986 3 333333    4999999988 63211 11   113468899999888777654    


Q ss_pred             -CcEEEEeCCCCce--eEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-ee--EEec-cCCCCEEEE
Q psy519          113 -KAVRLWSITDGAS--VRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-SV--RVFS-DHVSPVLSI  184 (351)
Q Consensus       113 -g~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-~~--~~~~-~~~~~i~~~  184 (351)
                       ..|+.+++.++..  ...+. ........+.|+|||++|+..........|.++|+.++. ..  ..+. ........+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence             3688888877642  22322 223456788999999998877643235679999998762 22  3333 334455666


Q ss_pred             EECCCCcEEEEEcCC----CeEEEEEcCCCcEEEE-eeccCCC--CEEEEEEcCCCCEEEEEeCCCe--EEEEeC-----
Q psy519          185 AFSPCGKYLASGGED----GLVLTHELTTGRVISR-FHLQEHE--PVTSLVWSVTGETLVTGSLTGT--VQFYGW-----  250 (351)
Q Consensus       185 ~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~i~~~-----  250 (351)
                      .|+.++.+++....+    ..|..+|+.++..... +. .+..  .+..+.+. .+.++++...++.  |.++++     
T Consensus       326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~  403 (751)
T 2xe4_A          326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDG  403 (751)
T ss_dssp             EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTS
T ss_pred             eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccc
Confidence            665444445554443    3677777764221111 11 2222  34556654 2344556666775  556664     


Q ss_pred             --CCCc-eeee---eecceeEE------ecCCcee-eeeeccceeeEEEeeeceeCceE
Q psy519          251 --PSAS-KIGI---GVYPRCAA------QPVGFEA-ATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       251 --~~~~-~~~~---~~~~~~~~------s~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                        .+++ ....   .......+      ++++..+ ....+...-..+..++..+|+..
T Consensus       404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence              3433 2221   11112333      3455543 33444444455666666666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.90  E-value=6.8e-07  Score=81.79  Aligned_cols=248  Identities=14%  Similarity=0.066  Sum_probs=151.4

Q ss_pred             ccEEEEecCCCceEEEecCCc-------cCCCcc--ceE-EEEECC---CC--cEEEEe------CCCcEEEEeCCCCee
Q psy519           25 EDVLANLESQKNLQSRYLPYY-------TSGHDM--TVW-SVEACS---KG--LALTGS------RDTTARLWSLEQMYP   83 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-------~~~~~~--~i~-~~~~~~---~~--~~~~~~------~d~~i~vw~~~~~~~   83 (351)
                      +..++.++.++.+.-+|..++       ...+..  .+. ......   +|  .+++++      .++.|+-+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            456677777888888888766       111110  111 001111   23  334444      378999999999998


Q ss_pred             eEEeeCCCCCe-----------------------------------------EEEEEeCCCCEEEEEeC-----------
Q psy519           84 LRIFVGHKQDV-----------------------------------------TCARFHPKITYIGTGSY-----------  111 (351)
Q Consensus        84 ~~~~~~~~~~i-----------------------------------------~~i~~~~~~~~l~~~~~-----------  111 (351)
                      +.........+                                         ..+++.|+..+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            77654221000                                         12456676677776653           


Q ss_pred             ---------C----CcEEEEeCCCCceeEEecc--CC--------CCeEEEEEc-cCCC---EEEEEecCCCCCeEEEEE
Q psy519          112 ---------D----KAVRLWSITDGASVRVFSD--HV--------SPVLSIAFS-PCGK---YLASGGTGSYDKAVRLWS  164 (351)
Q Consensus       112 ---------d----g~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~~~~d~~i~i~d  164 (351)
                               |    +.|.-+|..+++.+..++.  |.        .++. +... .+|+   .++.++.   +|.++++|
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~---~G~l~~lD  352 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADR---NGFFYVVD  352 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECT---TSEEEEEE
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECC---CceEEEEE
Confidence                     2    5899999999998887643  21        1222 2222 4674   6777777   99999999


Q ss_pred             ccCCceeEEeccCC-------------CCE--------------------------------EEEEECCCCcEEEEEc--
Q psy519          165 ITDGASVRVFSDHV-------------SPV--------------------------------LSIAFSPCGKYLASGG--  197 (351)
Q Consensus       165 ~~~~~~~~~~~~~~-------------~~i--------------------------------~~~~~~~~~~~l~~~~--  197 (351)
                      .++++.+..+....             .++                                ..++++|+..++++..  
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            99998876654321             000                                1245666555554432  


Q ss_pred             -------------------------------CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          198 -------------------------------EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       198 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                                                     .+|.|..||+.+++.+-+.....  +...-.....+.+++.++.||.++
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEE
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEE
Confidence                                           25789999999999876665332  222212222467788899999999


Q ss_pred             EEeCCCCceeeeeecc------eeEEecCCceeeeeec
Q psy519          247 FYGWPSASKIGIGVYP------RCAAQPVGFEAATLAA  278 (351)
Q Consensus       247 i~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~  278 (351)
                      .||.++++.+-.....      .+.+..+|+..+...+
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence            9999999988654332      3556677765444333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.89  E-value=1.8e-05  Score=68.94  Aligned_cols=230  Identities=9%  Similarity=-0.033  Sum_probs=144.9

Q ss_pred             cEEEEecCCCceEEEecCCc----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCC----eeeEEeeCCCCCeE
Q psy519           26 DVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQM----YPLRIFVGHKQDVT   95 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~i~   95 (351)
                      .+|+.+ ....|+..++...    .......+..++|++. +.+ .+-...+.|+.+++...    .....+........
T Consensus        84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            344444 3467888887765    2233456789999975 445 55566788999998752    22333333445678


Q ss_pred             EEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe
Q psy519           96 CARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF  174 (351)
Q Consensus        96 ~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~  174 (351)
                      .+++.+ .++++++-...+.|.+.++........+.........++++|.+..|+.+..+ ..+.|...++.........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEEE
Confidence            899998 45555565667899999987655444444444567899999977777766531 1368999998654433333


Q ss_pred             ccCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          175 SDHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       175 ~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ...-.....++++|++..|+.+ ...+.|..+|+............ ......++++. .+.++.+-...+.|..++..+
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence            3334567899999877666655 45678999998644332222211 12456677773 334455555678899999777


Q ss_pred             Cceeee
Q psy519          253 ASKIGI  258 (351)
Q Consensus       253 ~~~~~~  258 (351)
                      ++.+..
T Consensus       321 G~~~~~  326 (400)
T 3p5b_L          321 GSDVNL  326 (400)
T ss_dssp             CCCCEE
T ss_pred             CCceEE
Confidence            765543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=2e-05  Score=66.30  Aligned_cols=225  Identities=9%  Similarity=-0.029  Sum_probs=138.5

Q ss_pred             EEEecCCCceEEEecCCc----cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCC----CeeeEEeeCCCCCeEEE
Q psy519           28 LANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~i~~i   97 (351)
                      |+.+. ...|+..++...    .......+..++|.+.+ .+ ++-..++.|..+++..    ......+...-.....+
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence            44443 345777787765    11223456789999754 45 6666678999999876    22222232222456789


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe-c
Q psy519           98 RFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF-S  175 (351)
Q Consensus        98 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-~  175 (351)
                      ++.+.+. +.++-...+.|.++++........+.........++++|.+..|+.+..+ ..+.|..+++.. .....+ .
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~~~~~~~  160 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VDIYSLVT  160 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CCEEEEEC
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CCeEEEEE
Confidence            9987544 44555667899999987544333333334567899999977776665541 126888888754 333333 2


Q ss_pred             cCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeecc--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          176 DHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQ--EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       176 ~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      ..-.....++++|++..|+.+ +..+.|..+|+.... ...+...  .......+++. .+.++++-...+.|..++..+
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence            234567899999876665544 456789999986433 2333211  12456788885 355555555678999999877


Q ss_pred             Cceee
Q psy519          253 ASKIG  257 (351)
Q Consensus       253 ~~~~~  257 (351)
                      ++...
T Consensus       239 g~~~~  243 (316)
T 1ijq_A          239 GSDVN  243 (316)
T ss_dssp             CCCCE
T ss_pred             CcceE
Confidence            65443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.89  E-value=5e-06  Score=73.22  Aligned_cols=234  Identities=10%  Similarity=0.028  Sum_probs=138.7

Q ss_pred             ceEEeeecCC-ccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCC-----cEEEEeCCCCe
Q psy519           13 HFIQNSFKPE-TVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDT-----TARLWSLEQMY   82 (351)
Q Consensus        13 ~v~~~~~sp~-~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~-----~i~vw~~~~~~   82 (351)
                      ....++|+|+ . +..|..+...+.|+.++....    ..........++++++|.++.+...+     .+...+...+.
T Consensus       140 ~P~gvavd~~s~-~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSN-YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTT-TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccC-CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568899982 1 334444444388999998655    33344568899999999884444321     13333332211


Q ss_pred             e-eEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEe-cc-CCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           83 P-LRIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVF-SD-HVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        83 ~-~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      . ...+. .......++++| ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|+++.|+.+...  .+
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~--~~  295 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG--KH  295 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT--TT
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC--CC
Confidence            1 01121 223456788999 6666666666788999998877652222 21 12233579999999976666542  67


Q ss_pred             eEEEEEccC--Cce--eEEeccC---------------CCCEEEEEE---------CCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          159 AVRLWSITD--GAS--VRVFSDH---------------VSPVLSIAF---------SPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       159 ~i~i~d~~~--~~~--~~~~~~~---------------~~~i~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      .|+.+++..  +..  ...+.+.               -.....+++         .+++.++++-..++.|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            899988652  221  1111111               123667899         777777777777888999885 55


Q ss_pred             cEEEEeeccC----------------CCCEEEEEEc-CCCCEEEEEeCCCeEEEEeCC
Q psy519          211 RVISRFHLQE----------------HEPVTSLVWS-VTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       211 ~~~~~~~~~~----------------~~~v~~~~~~-~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      ......-...                -.....++++ +++.++++-..+++|+.++++
T Consensus       375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4332221100                1236788888 566655555556778777654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.85  E-value=4.6e-06  Score=73.41  Aligned_cols=232  Identities=11%  Similarity=0.017  Sum_probs=135.1

Q ss_pred             ceEEeeecC-CccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCc-EEEEeC-CC----cEEEEeCCCC
Q psy519           13 HFIQNSFKP-ETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGL-ALTGSR-DT----TARLWSLEQM   81 (351)
Q Consensus        13 ~v~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~-d~----~i~vw~~~~~   81 (351)
                      ....++++| +  +..|.++...+.|+.+++...    +.........++|+++|. ++.+.. ++    .+.+.+.. +
T Consensus       138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            446789998 5  555555555488999998765    223445678999999998 544433 22    23334432 2


Q ss_pred             eee--EEeeCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           82 YPL--RIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        82 ~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ...  ..+.. ......++++| ++.++++-..++.|..++...+........ .......++|+|+|++|+.+...  .
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~--~  291 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN--Q  291 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT--T
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC--C
Confidence            211  22221 23356788999 677666666778999999887654222221 22346789999999966665432  7


Q ss_pred             CeEEEEEccCC--ce--eEEeccC---------------CCCEE-EEEEC--------CCCcEEEEEcCCCeEEEEEcCC
Q psy519          158 KAVRLWSITDG--AS--VRVFSDH---------------VSPVL-SIAFS--------PCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       158 ~~i~i~d~~~~--~~--~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      +.|..++....  +.  +..+.+.               -.... .++..        +++.+.++-..++.|+.++. +
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~  370 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-Q  370 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-T
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-C
Confidence            88999887532  11  1111111               01123 45443        34556666566677888873 4


Q ss_pred             CcEEEEeecc-----C-----------CCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q psy519          210 GRVISRFHLQ-----E-----------HEPVTSLVWSVT-GETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       210 ~~~~~~~~~~-----~-----------~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~  251 (351)
                      +.........     .           -.....++++|+ +.++++-..+++|+.++.+
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            5433322110     0           124778888884 5555555556777777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=4.5e-06  Score=76.39  Aligned_cols=190  Identities=14%  Similarity=0.059  Sum_probs=118.9

Q ss_pred             ccEEEEecC-CCceEEEec-CCc-------cCCCc--c-------ceEEEEEC-CCCc----EEEEeCCCcEEEEeCCCC
Q psy519           25 EDVLANLES-QKNLQSRYL-PYY-------TSGHD--M-------TVWSVEAC-SKGL----ALTGSRDTTARLWSLEQM   81 (351)
Q Consensus        25 ~~~l~~~~~-~~~i~i~~~-~~~-------~~~~~--~-------~i~~~~~~-~~~~----~~~~~~d~~i~vw~~~~~   81 (351)
                      +..|.+++. ++.|.-+|. .++       .....  .       ....+++. .++.    ++.++.|+.+.-+|.++|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345555555 677888887 555       11100  0       01224443 2455    778888999999999999


Q ss_pred             eeeEEeeCCCC----CeE-EEEEeCCCCEEEEEe------CCCcEEEEeCCCCceeEEeccCCCC---------------
Q psy519           82 YPLRIFVGHKQ----DVT-CARFHPKITYIGTGS------YDKAVRLWSITDGASVRVFSDHVSP---------------  135 (351)
Q Consensus        82 ~~~~~~~~~~~----~i~-~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~---------------  135 (351)
                      +.+........    .+. ..... ++ .+++++      .++.|+-+|.++|+.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            98877643220    111 11111 34 455554      3799999999999988766432111               


Q ss_pred             ----------------------e-EEEEEccCCCEEEEEecCC-------------CCCeEEEEEccCCceeEEeccCC-
Q psy519          136 ----------------------V-LSIAFSPCGKYLASGGTGS-------------YDKAVRLWSITDGASVRVFSDHV-  178 (351)
Q Consensus       136 ----------------------i-~~~~~~~~~~~l~~~~~~~-------------~d~~i~i~d~~~~~~~~~~~~~~-  178 (351)
                                            + ..+++.++...++.+....             +.+.|..+|.++++.+-.++... 
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 1356667777777765410             01479999999999887765421 


Q ss_pred             ---------CCEEEEEEC-CCC---cEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          179 ---------SPVLSIAFS-PCG---KYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       179 ---------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                               .++. +... .+|   ..++.++.+|.++++|.++++.+-...
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                     1222 2332 467   567788999999999999999887665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.84  E-value=1.2e-05  Score=68.72  Aligned_cols=200  Identities=9%  Similarity=-0.014  Sum_probs=128.6

Q ss_pred             ceEEeeecCCccccEEE-EecCCCceEEEecCCc-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           13 HFIQNSFKPETVEDVLA-NLESQKNLQSRYLPYY-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~-~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      .+..++|++.  +..|. +-...+.|..+++...     ..........+++.+ .+.+ ++-...+.|.+.+++.....
T Consensus        74 ~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           74 NAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            4578999986  55544 4445678888888765     111223456788876 4455 66667789999998755433


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGS-YD-KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ..+...-.....+++.|.+..|+.+. .. +.|..+++..................++++|++..|+.+...  .+.|..
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~--~~~I~~  229 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIER  229 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT--TTEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC--CCEEEE
Confidence            33333445678999999665555443 44 788888876433322223334557899999988877776542  678999


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      +|+........+.........+++. ++.++++-...+.|..++..+++....+.
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            9986544333333334456778873 45566666667888888866676555554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=9.2e-05  Score=70.50  Aligned_cols=251  Identities=12%  Similarity=-0.018  Sum_probs=162.4

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc----cC----------CCccceEEEEECCCCcEEEEeCCCcEEEE
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TS----------GHDMTVWSVEACSKGLALTGSRDTTARLW   76 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~----------~~~~~i~~~~~~~~~~~~~~~~d~~i~vw   76 (351)
                      ...|.++...++  |. |..|+.++-|..++....    ..          -....|.++...++|.+..|+.++-|..|
T Consensus       312 ~~~v~~i~~D~~--g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~  388 (781)
T 3v9f_A          312 NASARYIFQDSF--NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVF  388 (781)
T ss_dssp             SSCEEEEEECSS--CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEE
T ss_pred             CCeEEEEEEeCC--CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEE
Confidence            456888888888  76 455555666777876644    10          02356999999999999777777779999


Q ss_pred             eCCCCeeeEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEE
Q psy519           77 SLEQMYPLRIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        77 ~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      +..+++.....   ......|.++...+++.+. .|+.++-+..+|..+++......  .....|.++...+++.+.+ +
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-g  466 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-G  466 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-E
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-E
Confidence            98765432211   1234578888888777644 56766779999987765433221  1346789999888776544 4


Q ss_pred             ecCCCCCeEEEEEccCCceeEEeccC-----CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC---CCC
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFSDH-----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE---HEP  223 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~  223 (351)
                      +    .+.|..||..+++........     ...|.++...++|.+.+.....| +..||..+++. ..+....   ...
T Consensus       467 t----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~~~  540 (781)
T 3v9f_A          467 T----HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCSNT  540 (781)
T ss_dssp             E----TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSCSC
T ss_pred             E----CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCCCe
Confidence            3    356899998776544332222     35789999998887655443344 77788766543 3332211   246


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--------eecceeEEecCCcee
Q psy519          224 VTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--------GVYPRCAAQPVGFEA  273 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~~~~~s~~~~~~  273 (351)
                      |.++...++|.+.++. .+|.+..||..+++....        ..+..+...++|...
T Consensus       541 i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW  597 (781)
T 3v9f_A          541 INQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIW  597 (781)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred             eEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEE
Confidence            8999999888866554 466658888877654332        234455566666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=9.4e-06  Score=70.41  Aligned_cols=201  Identities=9%  Similarity=-0.018  Sum_probs=130.1

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc-----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|++.  +..| ++-...+.|+.+++...     ..........+++.+. +.+ ++-...+.|.+.+++....
T Consensus       116 ~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            44678999986  5544 45456678888888754     1112233456777754 455 6666678899988875443


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGS-YD-KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ...+...-.....+++.|.+..|+.+. .. +.|..+++..................++++|++..|+.+...  .+.|.
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--~~~I~  271 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIE  271 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT--TTEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC--CCEEE
Confidence            333333445678999998766665544 33 678888876543333333334557899999988777776542  67899


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      .+|+........+.........+++. .+.++++-...+.|..++..+++....+.
T Consensus       272 ~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          272 RANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            99986544333343334456788883 45666666677888888876776666654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.79  E-value=9e-06  Score=74.38  Aligned_cols=234  Identities=11%  Similarity=0.058  Sum_probs=144.2

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCC----CeE-E-EEEeC--CCC-EEEEEe------CCCcEEEEeCCCCce
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ----DVT-C-ARFHP--KIT-YIGTGS------YDKAVRLWSITDGAS  125 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~i~-~-i~~~~--~~~-~l~~~~------~dg~i~i~d~~~~~~  125 (351)
                      +++++.++.|+.|.-+|.++|+.+..+.....    .+. . +....  +++ .+++++      .++.|+-+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            55667888999999999999998877654321    111 1 11111  233 565654      378999999999998


Q ss_pred             eEEeccCCCCe-----------------------------------------EEEEEccCCCEEEEEecC----------
Q psy519          126 VRVFSDHVSPV-----------------------------------------LSIAFSPCGKYLASGGTG----------  154 (351)
Q Consensus       126 ~~~~~~~~~~i-----------------------------------------~~~~~~~~~~~l~~~~~~----------  154 (351)
                      +.........+                                         ..++++|+...++.+...          
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            77653211000                                         135667777777766521          


Q ss_pred             -----------CCCCeEEEEEccCCceeEEecc--CC--------CCEEEEEEC-CCCc---EEEEEcCCCeEEEEEcCC
Q psy519          155 -----------SYDKAVRLWSITDGASVRVFSD--HV--------SPVLSIAFS-PCGK---YLASGGEDGLVLTHELTT  209 (351)
Q Consensus       155 -----------~~d~~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~  209 (351)
                                 ...+.|..+|.++++.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|.++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                       0126899999999998877643  21        2222 2222 4674   788899999999999999


Q ss_pred             CcEEEEeeccCC------------CC--------------------------------EEEEEEcCCCCEEEEEe-----
Q psy519          210 GRVISRFHLQEH------------EP--------------------------------VTSLVWSVTGETLVTGS-----  240 (351)
Q Consensus       210 ~~~~~~~~~~~~------------~~--------------------------------v~~~~~~~~~~~l~~~~-----  240 (351)
                      ++.+..+.....            .+                                -..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998876654320            00                                01346677655554432     


Q ss_pred             ----------------------------CCCeEEEEeCCCCceeeeeec----ceeEEecCCceeeeeeccceeeEEEee
Q psy519          241 ----------------------------LTGTVQFYGWPSASKIGIGVY----PRCAAQPVGFEAATLAANSRVRTLREM  288 (351)
Q Consensus       241 ----------------------------~dg~i~i~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~  288 (351)
                                                  .+|.|..||+.+++.+-....    ..-.....+..+.+++.++   .++.+
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg---~l~A~  512 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDG---YFKAF  512 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTS---EEEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCC---cEEEE
Confidence                                        258899999999987643221    1222233455555565554   56677


Q ss_pred             eceeCceEEE
Q psy519          289 HEIVGPVVVV  298 (351)
Q Consensus       289 ~~~~g~~~~~  298 (351)
                      +..+|+...-
T Consensus       513 D~~tG~~lW~  522 (582)
T 1flg_A          513 DAKSGKELWK  522 (582)
T ss_dssp             ETTTCCEEEE
T ss_pred             ECCCCCEEEE
Confidence            7777775543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=2.1e-05  Score=74.88  Aligned_cols=230  Identities=14%  Similarity=0.047  Sum_probs=152.5

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----c----CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----T----SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~----~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..|.++...++  |.+. .|+.++-+..++....    .    ......|.++...++|.+..|..++-+..++.++++.
T Consensus       363 ~~v~~i~~d~~--g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          363 KVVSSVCDDGQ--GKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SCEEEEEECTT--SCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE
T ss_pred             cceEEEEEcCC--CCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE
Confidence            56888888887  7654 4555556888887654    1    1234679999999899997788778899999887764


Q ss_pred             eEEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC-----CCCeEEEEEccCCCEEEEEecCCC
Q psy519           84 LRIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH-----VSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        84 ~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      .....  .....|.++...+++. |..|+. +-+..+|..+++........     ...|.++...++|.+.+.. .   
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~---  513 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F---  513 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S---
T ss_pred             EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c---
Confidence            33221  1346788998888776 444555 56889998876654332212     3678999999888766554 3   


Q ss_pred             CCeEEEEEccCCceeEEecc----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC---CCCEEEEEE
Q psy519          157 DKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE---HEPVTSLVW  229 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~  229 (351)
                      ++-+..||.++++. ..+..    ....|.++...++|.+.++.. +|.+..||..+++. ..+....   ...+.++..
T Consensus       514 ~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~  590 (781)
T 3v9f_A          514 GGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISE  590 (781)
T ss_dssp             SSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEE
T ss_pred             CCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEE
Confidence            45688899766543 33321    234688999888888655544 66558888876653 3332221   245788999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          230 SVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       230 ~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      .++|.+.+++ .+| |..|+..+.+.
T Consensus       591 d~~g~lW~~t-~~G-l~~~~~~~~~~  614 (781)
T 3v9f_A          591 DKNGNIWAST-NTG-ISCYITSKKCF  614 (781)
T ss_dssp             CSSSCEEEEC-SSC-EEEEETTTTEE
T ss_pred             CCCCCEEEEc-CCc-eEEEECCCCce
Confidence            8888866554 444 66777765543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.78  E-value=8.2e-06  Score=71.83  Aligned_cols=197  Identities=10%  Similarity=0.018  Sum_probs=119.3

Q ss_pred             cceEEEEECCC---CcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCC
Q psy519           51 MTVWSVEACSK---GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITD  122 (351)
Q Consensus        51 ~~i~~~~~~~~---~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~  122 (351)
                      .....++|.|+   +.+..+...+.|+.+++.+++..... ........++++++++ |+.+...+     .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34668999984   67755544489999999887755443 3455688999999999 44444321     233333322


Q ss_pred             Cce-eEEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCCceeEEe-cc-CCCCEEEEEECCCCcEEEE-Ec
Q psy519          123 GAS-VRVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDGASVRVF-SD-HVSPVLSIAFSPCGKYLAS-GG  197 (351)
Q Consensus       123 ~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~-~~  197 (351)
                      +.. ...+. .......++++| ++.++++-..   ++.|+.+|..++.....+ .. .......++|+|++++|+. -.
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~---~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH---HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT---CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECC---CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            211 01121 223446688999 5655554434   788999998877652222 21 1222346999999985554 45


Q ss_pred             CCCeEEEEEcC--CCcE--EEEeecc--------------CCCCEEEEEE---------cCCCCEEEEEeCCCeEEEEeC
Q psy519          198 EDGLVLTHELT--TGRV--ISRFHLQ--------------EHEPVTSLVW---------SVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       198 ~dg~i~i~d~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      ..+.|+.++..  ++..  ...+...              .-.....+++         .+++.+.++-...++|+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            57889998865  2321  1111110              0124678999         777777777667788999884


Q ss_pred             CCCc
Q psy519          251 PSAS  254 (351)
Q Consensus       251 ~~~~  254 (351)
                       ++.
T Consensus       373 -~G~  375 (433)
T 4hw6_A          373 -EGR  375 (433)
T ss_dssp             -TSE
T ss_pred             -CCC
Confidence             443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.78  E-value=1e-05  Score=65.34  Aligned_cols=192  Identities=8%  Similarity=0.058  Sum_probs=123.9

Q ss_pred             CCccceEEeeecCCcccc-EEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519            9 GDHKHFIQNSFKPETVED-VLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      +-...+..++|+|+  ++ ++++...++.|...|....     ...-....-.+++.+++.+ ++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~--~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQ--SNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETT--TTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCC--CCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            34457899999998  65 4455677888888888744     1122245678888899988 55556788999987654


Q ss_pred             ee---eEEee------CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCceeEEec-------cCCCCeEEEEEc
Q psy519           82 YP---LRIFV------GHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT---DGASVRVFS-------DHVSPVLSIAFS  142 (351)
Q Consensus        82 ~~---~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~~i~~~~~~  142 (351)
                      ..   +....      ..+.....++|+|+++.|+++.......+|.+.   ....+..+.       .....+.+++++
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            32   22221      234556899999998877777766555555543   111122221       123457899999


Q ss_pred             cCCCEEE-EEecCCCCCeEEEEEccCCceeEEeccCC---------CCEEEEEECCCCcEEEEEcCCCeEEEEEc
Q psy519          143 PCGKYLA-SGGTGSYDKAVRLWSITDGASVRVFSDHV---------SPVLSIAFSPCGKYLASGGEDGLVLTHEL  207 (351)
Q Consensus       143 ~~~~~l~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  207 (351)
                      |....++ ....   ++.+..+|.+ ++.+..+.-..         .....|+|.++|+.. +.++.+.++.|..
T Consensus       182 p~tg~lliLS~~---s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~  251 (255)
T 3qqz_A          182 QQKNTLLVLSHE---SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP  251 (255)
T ss_dssp             TTTTEEEEEETT---TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred             CCCCeEEEEECC---CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence            9655544 4444   7889999965 55555543221         356899999999844 4467777776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.74  E-value=7.9e-05  Score=64.89  Aligned_cols=202  Identities=9%  Similarity=0.013  Sum_probs=132.0

Q ss_pred             ccceEEeeecCCccccEEE-EecCCCceEEEecCCc---------cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeC
Q psy519           11 HKHFIQNSFKPETVEDVLA-NLESQKNLQSRYLPYY---------TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~-~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~   78 (351)
                      ...+..++|++.  +..|. +-...+.|+.+++...         ..........+++.+ .+.+ ++-...+.|.+.++
T Consensus       111 ~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          111 LRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            356788999986  55554 4445678888887651         222334567788876 4555 66677889999998


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      +.......+...-.....+++.|.+..|+.+..  .+.|...++............-.....+++++++..|+.+...  
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~--  266 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--  266 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT--
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC--
Confidence            866544444444456789999996666655542  3789999986544333333334567899999988888877542  


Q ss_pred             CCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          157 DKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      .+.|..+|+...........  .-.....+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            67899999865433332222  22345677773 44556666677889889977777666664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.9e-05  Score=69.51  Aligned_cols=151  Identities=11%  Similarity=0.088  Sum_probs=96.0

Q ss_pred             ceEEEEECC--CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC-C----cEEEEeCCCCc
Q psy519           52 TVWSVEACS--KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD-K----AVRLWSITDGA  124 (351)
Q Consensus        52 ~i~~~~~~~--~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g----~i~i~d~~~~~  124 (351)
                      ....++++|  ++.+..+...+.|+.+|+++++..... ........++|+++++.|+++... +    .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            456789997  356644444488999999876644333 345567899999999966666542 2    3444443 332


Q ss_pred             ee--EEeccCCCCeEEEEEcc-CCCEEEEEecCCCCCeEEEEEccCCceeEEecc-CCCCEEEEEECCCCcEEE-EEcCC
Q psy519          125 SV--RVFSDHVSPVLSIAFSP-CGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLA-SGGED  199 (351)
Q Consensus       125 ~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~d  199 (351)
                      ..  ..+.. ......++++| ++.++++-..   ++.|..+|...+........ .......++|+|++++|+ +-...
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~---~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWN---AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETT---TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECC---CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            22  22222 23456788999 5665555444   78999999876654222221 223467899999999554 44567


Q ss_pred             CeEEEEEcC
Q psy519          200 GLVLTHELT  208 (351)
Q Consensus       200 g~i~i~d~~  208 (351)
                      +.|..++..
T Consensus       292 ~~I~~~~~d  300 (430)
T 3tc9_A          292 HYILRSDYD  300 (430)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEeCC
Confidence            889998765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.74  E-value=3.8e-05  Score=64.62  Aligned_cols=227  Identities=8%  Similarity=-0.014  Sum_probs=140.8

Q ss_pred             EEEEecCCCceEEEecCCcc------CCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCeee-EEeeCCCCCeEEE
Q psy519           27 VLANLESQKNLQSRYLPYYT------SGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCA   97 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~~------~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~i~~i   97 (351)
                      +|+.+. ...|+..++....      .........++|.+. +.+ .+-...+.|..+++...... ..+...-.....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            444443 4568888887541      111234567889874 455 66667788999998765321 2222222346688


Q ss_pred             EEeCC-CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc
Q psy519           98 RFHPK-ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus        98 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      ++.+. ++++++-...+.|.++++........+.........++++|.+..|+.+..+ ..+.|...++...........
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEEEEC
Confidence            99874 4555555567899999987543333333444667899999977777666531 147888888764333222333


Q ss_pred             CCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          177 HVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      .-.....++++|++..|+.+ +..+.|..+|+.... ...+..........+++.. +.++.+-...+.|..++..+++.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            33457899999966655544 567889999986433 2333222335677888853 34455555678999999877765


Q ss_pred             ee
Q psy519          256 IG  257 (351)
Q Consensus       256 ~~  257 (351)
                      ..
T Consensus       242 ~~  243 (318)
T 3sov_A          242 LR  243 (318)
T ss_dssp             CE
T ss_pred             eE
Confidence            43

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.72  E-value=4.4e-05  Score=64.24  Aligned_cols=201  Identities=7%  Similarity=-0.001  Sum_probs=128.6

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCccC------CCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCCe
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYYTS------GHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~~~------~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~   82 (351)
                      ....+++|++.  +..| ++-...+.|..++......      ..-.....+++.+ .+.+ ++-...+.|.+++++...
T Consensus        35 ~~~~~ld~d~~--~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           35 EDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEGG--GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEeC--CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            34668899986  4444 4545567888888765410      1112445677775 4555 666677899999987544


Q ss_pred             eeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           83 PLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        83 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ..............+++.|.+..|+.+..  .+.|...++............-.....++++|++..|+.+...  .+.|
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~--~~~I  190 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNFI  190 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC--CCEE
Confidence            33333344456789999997666655553  5788888876433222223333456899999988877776542  6889


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      ..+|+..................+++. .+.++.+-...+.|..++..+++....+.
T Consensus       191 ~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          191 HKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            999986443333333334456777775 34555666677889999987777665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.69  E-value=9.5e-05  Score=62.17  Aligned_cols=200  Identities=10%  Similarity=0.028  Sum_probs=127.4

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCC----c-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPY----Y-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~----~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~   79 (351)
                      .....++|++.  +..| ++-...+.|..+++..    .     ..........+++.+ .+.+ ++-...+.|.+.+++
T Consensus        30 ~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            44678999987  5544 4545568899998875    2     111223456788875 4455 666778899999987


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD--KAVRLWSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      .......+.........+++.|.+..|+.+...  +.|...++.. +....+ ...-.....++++|++..|+.+...  
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--  184 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--  184 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETT--
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECC--
Confidence            554333333344567899999966665555443  6888888753 333333 2234567899999988888776542  


Q ss_pred             CCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          157 DKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      .+.|..+|+...........  .......+++. .+.++++-...+.|..++..+++.+..+.
T Consensus       185 ~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            67899999864332222221  22346678875 45666666677889988887776655553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.68  E-value=2.3e-05  Score=65.67  Aligned_cols=187  Identities=17%  Similarity=0.237  Sum_probs=124.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCC----CC---EEEEEeC---CCcEEEEeC--CCCceeEEecc
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK----IT---YIGTGSY---DKAVRLWSI--TDGASVRVFSD  131 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~~~~~~  131 (351)
                      ++.....+-+.|||+ +++.++.+..  ..++.+..-|+    ++   ++++...   +++|.+|++  .++ .+..+..
T Consensus        43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~  118 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTD  118 (355)
T ss_dssp             EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSC
T ss_pred             EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccc
Confidence            366677889999999 7888887753  55677776663    22   2333333   478999976  333 3444421


Q ss_pred             ------CC-CCeEEEEE--ccC-CC-EEEEEecCCCCCeEEEEEcc-------CCceeEEeccCCCCEEEEEECCCCcEE
Q psy519          132 ------HV-SPVLSIAF--SPC-GK-YLASGGTGSYDKAVRLWSIT-------DGASVRVFSDHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       132 ------~~-~~i~~~~~--~~~-~~-~l~~~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l  193 (351)
                            .. ..+..+++  +|. +. ++++...   ++.+..|++.       +.+.++++.. .+.+..+...+....|
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k---~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK---EGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS---SSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC---CCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence                  11 55667777  774 44 5666666   8999999983       2355667654 4578889999988899


Q ss_pred             EEEcCCCeEEEEEcC-----CCcEEEEeeccCC-CCEEEEEE--cCCCC-EEEEEe-CCCeEEEEeCC-CCceeee
Q psy519          194 ASGGEDGLVLTHELT-----TGRVISRFHLQEH-EPVTSLVW--SVTGE-TLVTGS-LTGTVQFYGWP-SASKIGI  258 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~-~~v~~~~~--~~~~~-~l~~~~-~dg~i~i~~~~-~~~~~~~  258 (351)
                      +.+-++.-|..|+.+     +++.+..+...+- ..+..|++  .++++ +|++.+ .++.+.+||.+ +.+.+..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            999998778788855     3445544422222 46888888  45555 666665 57899999996 5554444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.59  E-value=4.3e-05  Score=63.47  Aligned_cols=194  Identities=10%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             EEEEECC-CCcE-EEEeCCCcEEEEeCCCCeeeEEeeCC-------CCCeEEEEE---eCCCCEEEEEe-----------
Q psy519           54 WSVEACS-KGLA-LTGSRDTTARLWSLEQMYPLRIFVGH-------KQDVTCARF---HPKITYIGTGS-----------  110 (351)
Q Consensus        54 ~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~i~~i~~---~~~~~~l~~~~-----------  110 (351)
                      .+++|.+ ++.+ ++.-..++|..|+...+.........       ...+.++.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3578876 4566 55557999999999865433322111       113579999   68877777543           


Q ss_pred             --CCCcEEEEeCC---CCceeEEec--c-----------CCCCeEEEEEccCCCEEEEEecCCCC-CeEEEEEccCCcee
Q psy519          111 --YDKAVRLWSIT---DGASVRVFS--D-----------HVSPVLSIAFSPCGKYLASGGTGSYD-KAVRLWSITDGASV  171 (351)
Q Consensus       111 --~dg~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~~~~d-~~i~i~d~~~~~~~  171 (351)
                        .+..+..||+.   +++.+....  .           .......++..++|+..++++.   . +.|...+... +.+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---~~~~I~rV~pdG-~~~  171 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---GMPAIARVSADG-KTV  171 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---SSCEEEEECTTS-CCE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---CCCeEEEEeCCC-CEE
Confidence              25779999998   777665432  1           1134789999999999998887   6 7777777543 333


Q ss_pred             EEec------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc------CCCCEEEE-EEcCCCCE-EE
Q psy519          172 RVFS------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ------EHEPVTSL-VWSVTGET-LV  237 (351)
Q Consensus       172 ~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~-~~~~~~~~-l~  237 (351)
                      ..+.      ......+.++++|+|+.|++....|.+..+|+...... .+...      .......+ ..-.+|+. |+
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vllV  250 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVLV  250 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEEE
Confidence            3221      11123568999999998888877999999998853320 12111      11234443 33346777 44


Q ss_pred             EEeCCCeEEEEeCCC
Q psy519          238 TGSLTGTVQFYGWPS  252 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~  252 (351)
                      +....+.+.+.+...
T Consensus       251 ~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          251 GARAPYAISFRSWDN  265 (334)
T ss_dssp             EEETTEEEEEECSST
T ss_pred             EcCCCCEEEEECCCC
Confidence            555566666666554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=0.00017  Score=63.87  Aligned_cols=237  Identities=12%  Similarity=0.054  Sum_probs=139.2

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----c---CCCccceEEEEE-------CCCCc-EEEEeCCC-----
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----T---SGHDMTVWSVEA-------CSKGL-ALTGSRDT-----   71 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~---~~~~~~i~~~~~-------~~~~~-~~~~~~d~-----   71 (351)
                      ....|+|+|.+.+.++++-...+.|++.|+...     .   .........++|       +++|. ++.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            457899999211445555444567888888875     1   112346899999       99997 45554433     


Q ss_pred             --cEEEEeCCC-Ceee-----EEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCC-------CCce----------
Q psy519           72 --TARLWSLEQ-MYPL-----RIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSIT-------DGAS----------  125 (351)
Q Consensus        72 --~i~vw~~~~-~~~~-----~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~----------  125 (351)
                        .|.+++... ++..     ..+... .....++.+|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665443 2221     122211 23457788994 5555566677889999987       4543          


Q ss_pred             -eEE-ec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC--Cce--eEEeccC---C------------CCEE-
Q psy519          126 -VRV-FS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD--GAS--VRVFSDH---V------------SPVL-  182 (351)
Q Consensus       126 -~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~---~------------~~i~-  182 (351)
                       ... +. +.....+.++|+|+|+.|+.+...  ...|+.+|...  +..  ...+.+.   .            .... 
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCC--CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence             112 11 123446789999999976666432  77899866543  221  0122111   0            1234 


Q ss_pred             EEEEC-------CCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccC-----------------------CCCEEEEEEcCC
Q psy519          183 SIAFS-------PCGKYLASGGEDGLVLTHELTTGRVISRFHLQE-----------------------HEPVTSLVWSVT  232 (351)
Q Consensus       183 ~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------~~~v~~~~~~~~  232 (351)
                      .++..       +++.++++=..+..|+.++ .++. +.++....                       -.....|+++++
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            44554       4566777767788899988 4554 33332110                       124678888886


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCc
Q psy519          233 -GETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       233 -~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                       +.+.++=..+.+|+.++++...
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCc
Confidence             6665665567788888876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.58  E-value=0.00033  Score=66.14  Aligned_cols=227  Identities=8%  Similarity=-0.044  Sum_probs=139.1

Q ss_pred             EEEEecCCCceEEEecCCc----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCC----eeeEEeeCCCCCeEE
Q psy519           27 VLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQM----YPLRIFVGHKQDVTC   96 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~i~~   96 (351)
                      +|+.+ ....|+..++...    +......+..++|.+. +.+ ++-...+.|+.+++...    .....+.........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            34443 3345777777644    2223456778999874 445 66666788999988753    223333334455678


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec
Q psy519           97 ARFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS  175 (351)
Q Consensus        97 i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~  175 (351)
                      |++.+.++ ++++-...+.|.+.++........+.........|+++|.+.+|+.+..+ ..+.|...++........+.
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEEe
Confidence            99988665 44555567899999987554433444444568899999987777766531 12679999986544444444


Q ss_pred             cCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC
Q psy519          176 DHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVT-GSLTGTVQFYGWPS  252 (351)
Q Consensus       176 ~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~  252 (351)
                      ..-.....|++++.+..|+.+ ...+.|..+++........+... .-....+|++.  +..|+. -...+.|...+..+
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence            344578899999866655555 45678999998644333322211 11345677764  334444 44568888888777


Q ss_pred             Cceee
Q psy519          253 ASKIG  257 (351)
Q Consensus       253 ~~~~~  257 (351)
                      ++.+.
T Consensus       633 G~~~~  637 (791)
T 3m0c_C          633 GSDVN  637 (791)
T ss_dssp             CCCCE
T ss_pred             CcceE
Confidence            75443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.49  E-value=6.4e-06  Score=76.77  Aligned_cols=226  Identities=10%  Similarity=-0.018  Sum_probs=126.2

Q ss_pred             eEEeeecCCccccEEEEecC-CCceEEEecCCc----cC--CCccceEEEEECCCCcE-EEEe-CC-----CcEEEEeCC
Q psy519           14 FIQNSFKPETVEDVLANLES-QKNLQSRYLPYY----TS--GHDMTVWSVEACSKGLA-LTGS-RD-----TTARLWSLE   79 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~-~~~i~i~~~~~~----~~--~~~~~i~~~~~~~~~~~-~~~~-~d-----~~i~vw~~~   79 (351)
                      ..++++.++  ++++++|+. +..+.+||..+.    ..  .....-.+++..+++++ +.|+ .+     ..+.+||..
T Consensus       245 ~~~~~~~~~--g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          245 CPGISMDGN--GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SCEEEECTT--SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cccccCCCC--CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            345677788  999999984 457999998766    11  11111234556678877 7777 34     569999998


Q ss_pred             CCeeeEEe----eCCCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCceeEEeccCC---------CCeE
Q psy519           80 QMYPLRIF----VGHKQDVTCARFHPKITYIGTGSYD---------KAVRLWSITDGASVRVFSDHV---------SPVL  137 (351)
Q Consensus        80 ~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~---------~~i~  137 (351)
                      +.+-...-    ......-....+..++..++.++.+         ..+..||..+...........         ..-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            76543220    0000000001122344444555444         456788887766443322111         1224


Q ss_pred             EEEEcc-CCCEEEEEecCCCC-----C---eEEEEEccCCceeEEe--ccCCCC-EEEEEECCCCcEEEEEcCC------
Q psy519          138 SIAFSP-CGKYLASGGTGSYD-----K---AVRLWSITDGASVRVF--SDHVSP-VLSIAFSPCGKYLASGGED------  199 (351)
Q Consensus       138 ~~~~~~-~~~~l~~~~~~~~d-----~---~i~i~d~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~~~~~d------  199 (351)
                      ++.|.. ++++++.|+....+     .   .+.+||..+..-....  ...... -..++..|++++++.|+.+      
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            455543 67777887741111     1   6888888766533322  111121 2345667899999998754      


Q ss_pred             -----CeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeC
Q psy519          200 -----GLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       200 -----g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~  241 (351)
                           ..+.+||..+.+-...-..... .......+.|++++++.|+.
T Consensus       483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 4689999977653321111111 12234556789999999885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.46  E-value=0.00047  Score=58.22  Aligned_cols=225  Identities=9%  Similarity=0.003  Sum_probs=127.6

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCe
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY   82 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~   82 (351)
                      ...+.++.|+|+   ..++++ ..+.|.. ..+.+        ...+...+..+.+.+++.++.++.++.|..- .+.++
T Consensus        79 ~~~~~~i~~~~~---~~~~~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQGN---EGWIVG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGK  152 (327)
T ss_dssp             CCEEEEEEEETT---EEEEEE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTS
T ss_pred             CccEEEEEecCC---eEEEEE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCC
Confidence            457888999754   344444 4554432 22222        1123355778888777777555556654322 12222


Q ss_pred             e-eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEE-EeCCCCceeEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           83 P-LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL-WSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        83 ~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      . ..........+..+.+.+++.+++.+. +|.++. .|- .++.-.. -......+..+++.+++..++.+ .   +|.
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~---~G~  226 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-N---GGK  226 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEE-T---TTE
T ss_pred             CCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEe-C---Cce
Confidence            1 122234456788999999888877665 454443 342 1222111 12345678899999988776654 4   777


Q ss_pred             EEEEEccCCceeEEecc----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc--CCCCEEEEEEcCCC
Q psy519          160 VRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ--EHEPVTSLVWSVTG  233 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~  233 (351)
                      +++.+...++.-..+..    ....+..+.+.+++..++++. +|.+ ++....++.-..+...  ....+..+.|.+++
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD  304 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence            77764222332222211    223588999998888777665 5656 4455555544443321  23567888887555


Q ss_pred             CEEEEEeCCCeEEEEeC
Q psy519          234 ETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~  250 (351)
                      . +++++.+|.|.-++-
T Consensus       305 ~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          305 Q-GFILGQKGILLRYVT  320 (327)
T ss_dssp             E-EEEECSTTEEEEECC
T ss_pred             c-eEEEcCCceEEEEcC
Confidence            5 556667888776653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.45  E-value=0.00064  Score=64.26  Aligned_cols=203  Identities=9%  Similarity=0.006  Sum_probs=128.7

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLE   79 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~   79 (351)
                      ...+..++|++.. +.++++-...+.|+.+++...         ..........|++.+.+ ++ ++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            3456789999851 444455555677888887642         11123445677877655 44 677778899999988


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      .......+.........|++.|.+..|+.+..  .+.|...++........+.........|++++.+..|+.+...  .
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~--~  579 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--L  579 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT--T
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC--C
Confidence            65544444444456889999997666655543  2679999987544434444344678899999888887777542  6


Q ss_pred             CeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          158 KAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      ..|..+|+...........  .-.....|++. .+.++++-...+.|...+..+++.+..+.
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            7899999865443333332  12234567664 33455555567788888877776665553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=0.00051  Score=60.84  Aligned_cols=199  Identities=12%  Similarity=0.054  Sum_probs=118.7

Q ss_pred             ceEEEEECCC--CcE-EEEeCCCcEEEEeCCCCeeeEEeeCC---CCCeEEEEE-------eCCCCEEEEEeCCC-----
Q psy519           52 TVWSVEACSK--GLA-LTGSRDTTARLWSLEQMYPLRIFVGH---KQDVTCARF-------HPKITYIGTGSYDK-----  113 (351)
Q Consensus        52 ~i~~~~~~~~--~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~i~~i~~-------~~~~~~l~~~~~dg-----  113 (351)
                      ....|+|.|.  +.+ ++....+.|++.|++++.........   ......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983  455 55555578999999887765444322   235789999       99999776666554     


Q ss_pred             --cEEEEeCCC-Ccee-----EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc-------CCce--------
Q psy519          114 --AVRLWSITD-GASV-----RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-------DGAS--------  170 (351)
Q Consensus       114 --~i~i~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~-------~~~~--------  170 (351)
                        .+.+++... +...     ..+... .....++++|++..|+.+...  ++.|..+|+.       ++..        
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~--~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYE--KGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETT--TTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECC--CCEEEEEecccccccccCceeeccccccc
Confidence              266776443 2221     222222 234568899965555544431  7889999997       5543        


Q ss_pred             ---eEE-ec-cCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcC--CCcE--EEEeecc--C------------CCCEE-
Q psy519          171 ---VRV-FS-DHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELT--TGRV--ISRFHLQ--E------------HEPVT-  225 (351)
Q Consensus       171 ---~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~--~------------~~~v~-  225 (351)
                         ... +. ........++|+|+|++|+.+ +....|+.++..  .+..  ...+...  .            -.... 
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence               112 21 223446789999999965444 567788886653  2221  0112110  0            01345 


Q ss_pred             EEEEc-------CCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          226 SLVWS-------VTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       226 ~~~~~-------~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      .++..       +++.+.++=..+.+|+.++ +++.
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~  411 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI  411 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence            45554       4566666666678899888 4443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.42  E-value=0.00058  Score=57.66  Aligned_cols=253  Identities=9%  Similarity=0.023  Sum_probs=138.0

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc-----c----CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCC
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----T----SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQM   81 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~----~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~   81 (351)
                      ...+.+|.|.+.  +..++++ ..|.|. ...+.+     .    ......+.++.|.+ +....++..+.|.. ....+
T Consensus        35 ~~~~~~v~~~~~--~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDR--HHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSS--SCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTT
T ss_pred             CCcEEEEEECCC--CcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCC
Confidence            457899999877  7777755 456542 233322     1    11245788999986 45544455665443 22323


Q ss_pred             e---eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-EEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           82 Y---PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        82 ~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +   .+.....+...+..+.+.+++..++.+ .+|.|.. ....++.- .........+..+++.|++.+++++.    +
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~----~  182 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS----R  182 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET----T
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC----C
Confidence            3   221111233457778877776666655 4565432 22233322 22234456789999999988887764    4


Q ss_pred             CeEEE-EEccCCceeEEe-ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc---CCCCEEEEEEcCC
Q psy519          158 KAVRL-WSITDGASVRVF-SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ---EHEPVTSLVWSVT  232 (351)
Q Consensus       158 ~~i~i-~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~  232 (351)
                      +.+.. .|- .++.-..+ ......+..+.+.+++..++++ .+|.+++.+...++.-..+...   ....+..+.+.++
T Consensus       183 G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          183 GSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             SSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             CcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence            44443 332 12222221 2345678899999988766554 5787776642224333322212   2235889999988


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce---ee-----eeecceeEEecCCceeeeeeccc
Q psy519          233 GETLVTGSLTGTVQFYGWPSASK---IG-----IGVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~---~~-----~~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      +.+++++. +|.+ ++....++.   +.     ...+..+.+.+++.. .+++.++
T Consensus       261 ~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~-~~~G~~G  313 (327)
T 2xbg_A          261 NEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG-FILGQKG  313 (327)
T ss_dssp             SCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE-EEECSTT
T ss_pred             CEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce-EEEcCCc
Confidence            88777664 6666 334443322   11     123456666655443 3444444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.36  E-value=3.9e-06  Score=78.54  Aligned_cols=223  Identities=8%  Similarity=-0.034  Sum_probs=128.8

Q ss_pred             CCceEEEecCCc----cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCC----CeeeEEeeCCCCCeEEEEEeCC-
Q psy519           34 QKNLQSRYLPYY----TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHPK-  102 (351)
Q Consensus        34 ~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~i~~i~~~~~-  102 (351)
                      .+.|+..++...    .......+..++|.+.+ .+ ++-...+.|+.+++.+    ......+.........|++.+. 
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            356777777654    22223456678898755 44 4445568899999875    2222222222223456788754 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEE
Q psy519          103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVL  182 (351)
Q Consensus       103 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  182 (351)
                      ++++++-...+.|.++++........+.........++++|.+.+|+.+..+ ..+.|..+++............-....
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            4455554567889999987554433333333456789999976666655431 126788888754332222222233456


Q ss_pred             EEEECCCCc-EEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          183 SIAFSPCGK-YLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       183 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      .|+|+|++. ++++-+..+.|..+++........+... .......|++..+ .++++....+.|..++..+++.+..
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence            899998755 4455556778999998643322222111 1133456666543 4444555578999999887776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.35  E-value=0.00029  Score=59.07  Aligned_cols=199  Identities=14%  Similarity=0.165  Sum_probs=126.1

Q ss_pred             EeeecCCcc-ccEEEEecCCCceEEEecCCc-cCC-CccceEEEEECCC----Cc---E--EEEeC--CCcEEEEeC--C
Q psy519           16 QNSFKPETV-EDVLANLESQKNLQSRYLPYY-TSG-HDMTVWSVEACSK----GL---A--LTGSR--DTTARLWSL--E   79 (351)
Q Consensus        16 ~~~~sp~~~-~~~l~~~~~~~~i~i~~~~~~-~~~-~~~~i~~~~~~~~----~~---~--~~~~~--d~~i~vw~~--~   79 (351)
                      ++-.+|.+. ..+++.....+-+.+||+... +.. ..+.++.+..-|+    |+   +  ++.-.  +++|.+|++  .
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~  109 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC
Confidence            344445311 455666667788999999665 111 1245666665543    21   3  33344  588999976  3


Q ss_pred             CCeeeEEeeC------CC-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEeCC-------CCceeEEeccCCCCeEEEEE
Q psy519           80 QMYPLRIFVG------HK-QDVTCARF--HPK-IT-YIGTGSYDKAVRLWSIT-------DGASVRVFSDHVSPVLSIAF  141 (351)
Q Consensus        80 ~~~~~~~~~~------~~-~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~  141 (351)
                      +++ +..+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++.+. ..+.+..++.
T Consensus       110 ~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~Egcvv  187 (355)
T 3amr_A          110 NGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAA  187 (355)
T ss_dssp             TCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEE
T ss_pred             CCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEE
Confidence            433 444421      11 45666777  664 43 67778889999999883       335566765 3568899999


Q ss_pred             ccCCCEEEEEecCCCCCeEEEEEcc-----CCceeEEec--cCCCCEEEEEE--CCCCc-EEEEEc-CCCeEEEEEcC-C
Q psy519          142 SPCGKYLASGGTGSYDKAVRLWSIT-----DGASVRVFS--DHVSPVLSIAF--SPCGK-YLASGG-EDGLVLTHELT-T  209 (351)
Q Consensus       142 ~~~~~~l~~~~~~~~d~~i~i~d~~-----~~~~~~~~~--~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~-~  209 (351)
                      .+....|+.+-+   +..|..||.+     +++.+..+.  .....+..|++  .++++ +|++++ .+....+||.. +
T Consensus       188 Dd~~g~Lyv~eE---d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          188 DDEYGRLYIAEE---DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             ETTTTEEEEEET---TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cCCCCeEEEecc---cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            998899999988   7777777755     234454442  12246788887  45555 666666 57799999996 5


Q ss_pred             CcEEEEeecc
Q psy519          210 GRVISRFHLQ  219 (351)
Q Consensus       210 ~~~~~~~~~~  219 (351)
                      .+.+..|...
T Consensus       265 ~~~vg~f~Ig  274 (355)
T 3amr_A          265 NKYVADFRIT  274 (355)
T ss_dssp             CCEEEEEEEC
T ss_pred             CcEEEEEEec
Confidence            6666666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.31  E-value=0.00098  Score=55.44  Aligned_cols=164  Identities=7%  Similarity=0.066  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEeccC-------CCCeEEEEE---ccCCCEEEEEecC---
Q psy519           89 GHKQDVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVRVFSDH-------VSPVLSIAF---SPCGKYLASGGTG---  154 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~---~~~~~~l~~~~~~---  154 (351)
                      .......+++|++....++.++ ..++|..||...+.........       ...+..+.|   .|++.++++...+   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3344456789988656666655 7899999998755433332111       114579999   6887777754310   


Q ss_pred             -------CCCCeEEEEEcc---CCceeEEec--c-----------CCCCEEEEEECCCCcEEEEEcCC-CeEEEEEcCCC
Q psy519          155 -------SYDKAVRLWSIT---DGASVRVFS--D-----------HVSPVLSIAFSPCGKYLASGGED-GLVLTHELTTG  210 (351)
Q Consensus       155 -------~~d~~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  210 (351)
                             +.+..|..||+.   +++.+....  .           .......++..++|+..++++.. +.|...+... 
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-
Confidence                   115779999998   776655442  1           11247899999999999988888 8888777653 


Q ss_pred             cEEEEeeccC-----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          211 RVISRFHLQE-----HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       211 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      +....+....     ....+.++++|+|+.|++....|.+.-+|+...
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            3333332111     123679999999998888877999999998843

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.28  E-value=0.00046  Score=58.91  Aligned_cols=215  Identities=16%  Similarity=0.134  Sum_probs=116.6

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCee--eEEe---eCCCCCeEEEEEeCC---CCEEEEEeC-C-----CcEE
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYP--LRIF---VGHKQDVTCARFHPK---ITYIGTGSY-D-----KAVR  116 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~--~~~~---~~~~~~i~~i~~~~~---~~~l~~~~~-d-----g~i~  116 (351)
                      ...+.++|.|+|.++.+..++.|++++  +++.  +..+   .........++++|+   +..|+++.. .     ..|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            346789999999997777789999998  3432  2111   122356789999998   455544433 2     6788


Q ss_pred             EEeCCCCc-----ee-EEec---cCCCCeEEEEEccCCCEEEEEecC----------CCCCeEEEEEccCC---------
Q psy519          117 LWSITDGA-----SV-RVFS---DHVSPVLSIAFSPCGKYLASGGTG----------SYDKAVRLWSITDG---------  168 (351)
Q Consensus       117 i~d~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~~~----------~~d~~i~i~d~~~~---------  168 (351)
                      .++...+.     .+ ..+.   ........++|.|+|.+.++.+..          +..+.|.-+|....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88876432     11 1122   111233679999999766664321          01256666665420         


Q ss_pred             -----ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCe--------EEEEEcCCCc------------------EEEEe
Q psy519          169 -----ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGL--------VLTHELTTGR------------------VISRF  216 (351)
Q Consensus       169 -----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~------------------~~~~~  216 (351)
                           ..+.. .++ .....++|+| ++.++++-.....        |.+.  ..+.                  ....+
T Consensus       189 ~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          189 RRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             CTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             CCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 11111 122 2356789999 6665554433222        3332  2221                  11111


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eee----eecceeEEecCCceee
Q psy519          217 HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK-------IGI----GVYPRCAAQPVGFEAA  274 (351)
Q Consensus       217 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-------~~~----~~~~~~~~s~~~~~~~  274 (351)
                        ........++| .+|.++++.-..+.|...++.....       ...    ..+..+++.|||...+
T Consensus       265 --~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv  330 (352)
T 2ism_A          265 --PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYV  330 (352)
T ss_dssp             --TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEE
T ss_pred             --CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEE
Confidence              22335677777 4566666655567777777654321       000    2334567777775433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.23  E-value=1.6e-05  Score=74.36  Aligned_cols=201  Identities=9%  Similarity=0.011  Sum_probs=120.9

Q ss_pred             cceEEeeecCCccccEEEEe-cCCCceEEEecCC----c-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANL-ESQKNLQSRYLPY----Y-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~----~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ..+..++|++.  +..|..+ ...+.|+.+++..    .     ..........+++.+ .+.+ ++-...+.|.++++.
T Consensus       406 ~~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            34567899987  6555544 4567899998875    1     111122345677774 3444 555667889999987


Q ss_pred             CCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      .......+.........+++.|.+..|+.+..  .+.|..+++........+.........|+++|++..|+.+...  .
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~--~  561 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--L  561 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT--T
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC--C
Confidence            65443333333345678899986665555443  2678888775433222222223445789999987777666542  6


Q ss_pred             CeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          158 KAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      +.|..+|+........+..  .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus       562 ~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          562 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             TEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             CeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            7899999864333322221  1122345566543 445555567889999988887776654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.23  E-value=0.0016  Score=59.91  Aligned_cols=219  Identities=8%  Similarity=-0.043  Sum_probs=128.0

Q ss_pred             CCceEEEecCCc------cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCee-eEEeeCCCCCeEEEEEeCCCC
Q psy519           34 QKNLQSRYLPYY------TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYP-LRIFVGHKQDVTCARFHPKIT  104 (351)
Q Consensus        34 ~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~i~~i~~~~~~~  104 (351)
                      ...|+..++...      ....-.....++|++.+ .+ .+-...+.|..++++.... ...+...-.....+++.+.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            456777776542      22234457789999855 44 4555578899999876532 223333335688999998555


Q ss_pred             -EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          105 -YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       105 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                       ++++-...+.|.+.++........+.........++++|.+..|+.+..+ ..+.|...++............-.....
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence             44555567899999987544333333344556789999987776666531 1467777787544333333333456789


Q ss_pred             EEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          184 IAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       184 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      +++++++..|+.+ ...+.|..+|+.... ...+.........++++..+ .+..+-...+.|...|..+++.
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            9999976555544 556789999886433 32221111223456777654 3334444567888888876654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.20  E-value=0.0019  Score=55.01  Aligned_cols=216  Identities=13%  Similarity=0.075  Sum_probs=121.1

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc------c---CCCccceEEEEECCC----CcE-EEEeCC-----CcE
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------T---SGHDMTVWSVEACSK----GLA-LTGSRD-----TTA   73 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~---~~~~~~i~~~~~~~~----~~~-~~~~~d-----~~i   73 (351)
                      ....++|.|+  |.++++ ...|.|++++ ...      .   .........++|+|+    +.+ ++-...     +.|
T Consensus        32 ~P~~ia~~pd--G~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPD--GGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTT--SCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCC--CeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4578999999  986665 4568898887 322      1   112356789999998    555 444432     678


Q ss_pred             EEEeCCCCe-----ee-EEee---CCCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCC--------
Q psy519           74 RLWSLEQMY-----PL-RIFV---GHKQDVTCARFHPKITYIGTGSY-------------DKAVRLWSITDG--------  123 (351)
Q Consensus        74 ~vw~~~~~~-----~~-~~~~---~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------  123 (351)
                      ..++...++     .+ ..+.   ........++|.|||.+.++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            888876431     11 1122   11122358999999976666432             245666665420        


Q ss_pred             ----ceeEEe-ccCCCCeEEEEEcc-CCCEEEEEecCCCCC-------eEEEEEccCCc------------------eeE
Q psy519          124 ----ASVRVF-SDHVSPVLSIAFSP-CGKYLASGGTGSYDK-------AVRLWSITDGA------------------SVR  172 (351)
Q Consensus       124 ----~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~~~d~-------~i~i~d~~~~~------------------~~~  172 (351)
                          .....+ .++ .....++|+| ++.+++ +..+. +.       .|.+.  ..+.                  +..
T Consensus       188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v-~d~g~-~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFS-SEHGP-SGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             TCTTSCTTEEEECC-SEECCCEECTTTCCEEE-EEECC-------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCCCCCccEEEEcC-CCcccEEEECCCCCEEE-EEcCC-CCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeE
Confidence                011111 122 3356789999 555444 43311 21       23332  2221                  222


Q ss_pred             EeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE------EEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV------ISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      .+. +......++| .+|+++++.-..+.|...++.....      ...+. .....+..+++.|||.+.++..
T Consensus       263 ~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          263 FWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence            332 2234567777 4677777766777888887764321      12221 2335789999999998766654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.19  E-value=0.00098  Score=61.38  Aligned_cols=198  Identities=6%  Similarity=-0.027  Sum_probs=120.8

Q ss_pred             ccceEEeeecCCccccEEEEe-cCCCceEEEecCCc------cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCC
Q psy519           11 HKHFIQNSFKPETVEDVLANL-ESQKNLQSRYLPYY------TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      -.....++|++.  +..|..+ ...+.|..++++..      ..........+++.+. +++ ++-...+.|.+.+++..
T Consensus        39 ~~~~~~ld~~~~--~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           39 LEDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CSCEEEEEEETT--TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEEeC--CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            345788999997  5555544 44677888887653      1122246778999874 455 66667889999998765


Q ss_pred             eeeEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           82 YPLRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        82 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                      .....+...-.....|++.|.+..|+.+..  .+.|...++..................+++++++..|+.+...  .+.
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~--~~~  194 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNF  194 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETT--TCC
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCC--CCe
Confidence            433333334455778999997666655543  3677777776433333333344567899999988887777542  678


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI  213 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  213 (351)
                      |..+|+..................+++..+ ..+++-...+.|...|..+++..
T Consensus       195 I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          195 IHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             EEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            999998654332222211222346677655 44445456778888888776543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.18  E-value=0.0042  Score=57.30  Aligned_cols=223  Identities=6%  Similarity=-0.095  Sum_probs=141.5

Q ss_pred             cEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEE
Q psy519           26 DVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCA   97 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i   97 (351)
                      .+|+.+ ....|+..++...      ....-..+..++|.+.+ .+ .+-..++.|..+++........+.........+
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            455554 4567888888754      11123457789999854 44 666678899999987654433343333456789


Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc
Q psy519           98 RFHPKIT-YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus        98 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      ++.+.+. +.++-...+.|.+.++........+.........++++|....|+.+..+ ..+.|...++......... .
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l~-~  163 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTLV-P  163 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEE-C
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEEE-C
Confidence            9987655 44555557889999987544333333344567899999976666665431 1467888887654433333 3


Q ss_pred             CCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy519          177 HVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      .-.....++++++++.|+.+ ...+.|..+|+..... ..+. ........+++.. +.+.++-...+.|...|..+++
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            44567899999976665555 5567899999865433 2232 2234567888764 3444444457889988876654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.15  E-value=0.00093  Score=55.54  Aligned_cols=222  Identities=11%  Similarity=0.023  Sum_probs=116.4

Q ss_pred             ccEEEEec-CC-----CceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC-----CcEEEEeCCCCe---
Q psy519           25 EDVLANLE-SQ-----KNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD-----TTARLWSLEQMY---   82 (351)
Q Consensus        25 ~~~l~~~~-~~-----~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d-----~~i~vw~~~~~~---   82 (351)
                      +.+++.|+ .+     ..+..||..+.       .......- +++. .++.+ +.|+.+     ..+.+||+.+.+   
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            67778877 33     36788887766       11111111 1222 24555 777754     468999988755   


Q ss_pred             e--eEEeeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeEE--eccCCCCeEEEEEccCCCEEEEEec
Q psy519           83 P--LRIFVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        83 ~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      -  +..+.........+.+  +++.++.|+.+     ..+.+||+.+.+....  +........++.+  ++++++.|+.
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  168 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGY  168 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCC
Confidence            2  2222222222222322  56777777654     3688999887764332  2211122222223  6677777765


Q ss_pred             CC--CCCeEEEEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcEEEEeeccCCC-C
Q psy519          154 GS--YDKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRVISRFHLQEHE-P  223 (351)
Q Consensus       154 ~~--~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~-~  223 (351)
                      ..  ....+..||+.+.+=...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-...... .
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            11  125689999877632221  1111111222222  56777777653     46899999877544322222111 1


Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcee
Q psy519          224 VTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKI  256 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~  256 (351)
                      ...+.+  ++++++.|+.+     ..+.+||.++.+-.
T Consensus       247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            122222  56777777655     45788888776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.14  E-value=0.0029  Score=53.97  Aligned_cols=229  Identities=14%  Similarity=0.070  Sum_probs=123.9

Q ss_pred             cceEEeeecCCcccc-EEEEecCCCceEEEecCCcc-----------CCCccceEEEEECCC----CcE-EEEeC-----
Q psy519           12 KHFIQNSFKPETVED-VLANLESQKNLQSRYLPYYT-----------SGHDMTVWSVEACSK----GLA-LTGSR-----   69 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~~-----------~~~~~~i~~~~~~~~----~~~-~~~~~-----   69 (351)
                      .....++|.|+  |+ ++++ ...|.|++++.....           .........++++|+    +.+ ++-..     
T Consensus        18 ~~P~~i~~~pd--G~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPD--NHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECST--TCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCC--CCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            34578999999  98 5554 567899988754321           112345689999995    655 44332     


Q ss_pred             --CCcEEEEeCCCC--e--eeE-EeeC------CCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCC
Q psy519           70 --DTTARLWSLEQM--Y--PLR-IFVG------HKQDVTCARFHPKITYIGTGSY-------------DKAVRLWSITDG  123 (351)
Q Consensus        70 --d~~i~vw~~~~~--~--~~~-~~~~------~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~  123 (351)
                        ...|..+++...  +  ... .+..      .......++|.|||.+.++.+.             .|.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              235666666432  1  111 1111      1112357999999976665443             246777776532


Q ss_pred             c------------eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-----------------------
Q psy519          124 A------------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-----------------------  168 (351)
Q Consensus       124 ~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-----------------------  168 (351)
                      -            ....+.........++|+|+...|.++..+. ++.=.|.-+..+                       
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~-~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP-RGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS-BSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC-CCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0            1111211223467899999444455444311 111122111111                       


Q ss_pred             --------ceeEEeccCCCCEEEEEECC-------CCcEEEEEcCCCeEEEEEcCCCcEEEEeec--cCCCCEEEEEEcC
Q psy519          169 --------ASVRVFSDHVSPVLSIAFSP-------CGKYLASGGEDGLVLTHELTTGRVISRFHL--QEHEPVTSLVWSV  231 (351)
Q Consensus       169 --------~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~  231 (351)
                              ..+..+.. ...+..+.|.+       +++++++.-..+.|...++..++......+  .....+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                    11122222 23566777764       467777777778888888876544332221  2235789999999


Q ss_pred             CCCEEEEEe-CCCeE
Q psy519          232 TGETLVTGS-LTGTV  245 (351)
Q Consensus       232 ~~~~l~~~~-~dg~i  245 (351)
                      ||.+.++.. .+|.|
T Consensus       333 dG~lyv~td~~~g~I  347 (353)
T 2g8s_A          333 DGYLYVLTDESSGEL  347 (353)
T ss_dssp             TSCEEEEECSTTEEE
T ss_pred             CCcEEEEEeCCCCEE
Confidence            998665433 34433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.01  E-value=0.0092  Score=55.03  Aligned_cols=194  Identities=6%  Similarity=-0.035  Sum_probs=126.5

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc-----cCCCccceEEEEECCC-CcE-EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSK-GLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~-~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|++.  +..| ++-..++.|+.++++..     ..........+++.+. +++ ++-...+.|.+.+++....
T Consensus        37 ~~~~~l~~d~~--~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVT--DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEECC--CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence            46788999997  5555 45456788888887654     1112234567777654 445 6666778899999875443


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      ...+...-.....+++.|....|+.+..  .+.|...++......... ........++++++++.|+.+...  .+.|.
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~--~~~I~  191 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLD--TNLIE  191 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETT--TTEEE
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECC--CCEEE
Confidence            3233334456789999996555555542  567888887654433333 344667899999988888877642  67899


Q ss_pred             EEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcE
Q psy519          162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV  212 (351)
Q Consensus       162 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  212 (351)
                      .+|+..... ..+.........+++.. +.++++-...+.|...|..+++.
T Consensus       192 ~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          192 SSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            999865443 33333334556788764 45555555678888888766643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.00  E-value=0.005  Score=52.20  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             eEEEEECCCCcEEEEe-------------CCCcEEEEeCCC--Ceee-EEeeC-----CCCCeEEEEEeC--CCC-EEEE
Q psy519           53 VWSVEACSKGLALTGS-------------RDTTARLWSLEQ--MYPL-RIFVG-----HKQDVTCARFHP--KIT-YIGT  108 (351)
Q Consensus        53 i~~~~~~~~~~~~~~~-------------~d~~i~vw~~~~--~~~~-~~~~~-----~~~~i~~i~~~~--~~~-~l~~  108 (351)
                      .-.++..|+|..++++             .+|.|.++|+++  .+.. ..+.+     .......+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4456677888775554             689999999873  2221 12222     223667787766  343 4444


Q ss_pred             EeC---CCcEEEEeCCCCc----eeEEecc-CCCCeEEEEEccCCCEEEEEec--------------CCCCCeEEEEEcc
Q psy519          109 GSY---DKAVRLWSITDGA----SVRVFSD-HVSPVLSIAFSPCGKYLASGGT--------------GSYDKAVRLWSIT  166 (351)
Q Consensus       109 ~~~---dg~i~i~d~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--------------~~~d~~i~i~d~~  166 (351)
                      +..   +.++.+|++....    .+..+.+ .-.....+++.++|.+.++...              +...+.|.-+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            432   4567777765432    2223332 2245789999999987776531              011355666664 


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCC-CcEE--EEeeccCCCCEEEEEEcC-CCCEEEEEeC
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTT-GRVI--SRFHLQEHEPVTSLVWSV-TGETLVTGSL  241 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  241 (351)
                       ++ +..+...-...+.++|+||++.|+.+. ..+.|..|++.. +...  ..+  ........+++.+ +|++.+++..
T Consensus       211 -~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 -ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             -TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             -Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecC
Confidence             33 222222234568999999998777654 578899999863 3322  223  2245678899999 5987776654


Q ss_pred             C-CeEEEEe
Q psy519          242 T-GTVQFYG  249 (351)
Q Consensus       242 d-g~i~i~~  249 (351)
                      + +.|..|+
T Consensus       287 ~g~~v~~~~  295 (355)
T 3sre_A          287 NGMRIFFYD  295 (355)
T ss_dssp             CHHHHHSCC
T ss_pred             CceEEEEEC
Confidence            4 3444444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.99  E-value=0.0028  Score=52.68  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             ccEEEEecCC----CceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC-----CcEEEEeCCCCeeeEE-
Q psy519           25 EDVLANLESQ----KNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD-----TTARLWSLEQMYPLRI-   86 (351)
Q Consensus        25 ~~~l~~~~~~----~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d-----~~i~vw~~~~~~~~~~-   86 (351)
                      +.+++.|+.+    ..+..||....       .......- +++.. ++.+ +.|+.+     ..+.+||..+.+-... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            5677777653    35777887765       11111111 12222 4555 777654     3588899887653322 


Q ss_pred             -eeCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEecCCC--
Q psy519           87 -FVGHKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSY--  156 (351)
Q Consensus        87 -~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~--  156 (351)
                       +.........+.+  ++..++.|+.++     .+.+||+.+.+....-  .........+.+  ++++++.|+....  
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence             2111222222222  567777777553     5888998877644332  111112222222  5667777664211  


Q ss_pred             --CCeEEEEEccCCceeE--EeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcEEEEeeccCCCCEEEE
Q psy519          157 --DKAVRLWSITDGASVR--VFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRVISRFHLQEHEPVTSL  227 (351)
Q Consensus       157 --d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~  227 (351)
                        -..+.+||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.......-.++
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence              2458899987763221  11111111222222  57777777654     3688999987654432221111111122


Q ss_pred             EEcCCCCEEEEEeCCC-----eEEEEeCCCCce
Q psy519          228 VWSVTGETLVTGSLTG-----TVQFYGWPSASK  255 (351)
Q Consensus       228 ~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~  255 (351)
                      +. .++++++.|+.++     .+.+||..+.+-
T Consensus       248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            22 2567777776543     478888876643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.98  E-value=0.0048  Score=51.29  Aligned_cols=222  Identities=8%  Similarity=-0.014  Sum_probs=116.5

Q ss_pred             ccEEEEecC--CCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCC----CcEEEEeCCCCeeeEE--ee
Q psy519           25 EDVLANLES--QKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRD----TTARLWSLEQMYPLRI--FV   88 (351)
Q Consensus        25 ~~~l~~~~~--~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d----~~i~vw~~~~~~~~~~--~~   88 (351)
                      +.+++.|+.  ...+..||....       .......-..+.+  ++.+ +.|+.+    ..+.+||+.+.+-...  +.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345666664  356788888776       1111111112222  4555 777754    6788999987653322  22


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeEEec--cCCCCeEEEEEccCCCEEEEEecCCC----
Q psy519           89 GHKQDVTCARFHPKITYIGTGSYD------KAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSY----  156 (351)
Q Consensus        89 ~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~----  156 (351)
                      ........+.+  ++++++.|+.+      ..+.+||+.+.+....-.  ........+.+  ++++++.|+....    
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence            12222222222  56777777755      468999998876433321  11111222222  6667777764211    


Q ss_pred             --CCeEEEEEccCCceeEEecc---CCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcEEEEeeccCC-CCEE
Q psy519          157 --DKAVRLWSITDGASVRVFSD---HVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRVISRFHLQEH-EPVT  225 (351)
Q Consensus       157 --d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~~v~  225 (351)
                        -..+.+||+.+.+= ..+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+-...-..... ....
T Consensus       166 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  242 (306)
T 3ii7_A          166 RVLNSCEVYDPATETW-TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK  242 (306)
T ss_dssp             EECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred             cccceEEEeCCCCCeE-EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence              24588999877632 22211   1111122222  56777776643     3588999987653322111111 1222


Q ss_pred             EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceee
Q psy519          226 SLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIG  257 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~  257 (351)
                      .+.+  ++++++.|+.+     ..+.+||..+.+-..
T Consensus       243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            2333  66777777744     568888888765433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.96  E-value=0.0019  Score=55.42  Aligned_cols=145  Identities=15%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC----CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-----
Q psy519           99 FHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH----VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-----  169 (351)
Q Consensus        99 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-----  169 (351)
                      ...++..++.+- ++.||.-++......+.+...    ...+..+..+|+|++||..+    +..|.+..+..+.     
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCCC
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccccCcc
Confidence            344666666554 578888888755555555432    23678899999999999987    6789998886321     


Q ss_pred             -------eeEEecc------CCCCEEEEEECC---CCcEEEEEcCCCeEEEEEcCCCcE-EEEeecc--------CCCCE
Q psy519          170 -------SVRVFSD------HVSPVLSIAFSP---CGKYLASGGEDGLVLTHELTTGRV-ISRFHLQ--------EHEPV  224 (351)
Q Consensus       170 -------~~~~~~~------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~--------~~~~v  224 (351)
                             ..+.+.-      ...+|..+.|+|   .+..|++-..|+.|++||+..... ...+...        ....+
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCE
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceE
Confidence                   1122221      256899999999   456899999999999999985321 1122111        11568


Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEE
Q psy519          225 TSLVWSVTGETLVTGS--LTGTVQFY  248 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~--~dg~i~i~  248 (351)
                      .+++|.+++-.|...+  ..|.|+-.
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999887777755  77888665

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.96  E-value=0.0015  Score=55.40  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             eEEeeecCCccccEEEEe------------cCCCceEEEecCCc--------cCC-----CccceEEEEECC--CCc--E
Q psy519           14 FIQNSFKPETVEDVLANL------------ESQKNLQSRYLPYY--------TSG-----HDMTVWSVEACS--KGL--A   64 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~------------~~~~~i~i~~~~~~--------~~~-----~~~~i~~~~~~~--~~~--~   64 (351)
                      .-.++..|+  |..+++.            ..+|.|.++|..+.        ..+     .......+.+.+  ++.  +
T Consensus        52 ~EDi~~~~~--G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEECTT--SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEEcCC--CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            345567788  7666665            26899999998742        111     234566777654  353  3


Q ss_pred             -EEEeC--CCcEEEEeCCCC--e--eeEEeeCC-CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEe
Q psy519           65 -LTGSR--DTTARLWSLEQM--Y--PLRIFVGH-KQDVTCARFHPKITYIGTGSY-----------------DKAVRLWS  119 (351)
Q Consensus        65 -~~~~~--d~~i~vw~~~~~--~--~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~-----------------dg~i~i~d  119 (351)
                       ++-..  +.++.+|+++..  .  .+..+.+. -...+.+.+.++|.+.++...                 .|.++-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence             33222  467777776542  2  22233322 245789999999987776541                 24566666


Q ss_pred             CCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC-Cce--eEEeccCCCCEEEEEECC-CCcEEEE
Q psy519          120 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD-GAS--VRVFSDHVSPVLSIAFSP-CGKYLAS  195 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~  195 (351)
                      .  ++ +..+...-.....++|+||++.++++...  .+.|..||+.. ++.  .+.+ ...+..-.+++.+ +|++.++
T Consensus       210 ~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~--~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          210 P--ND-VRVVAEGFDFANGINISPDGKYVYIAELL--AHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             T--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred             C--Ce-EEEeecCCcccCcceECCCCCEEEEEeCC--CCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence            4  33 22332233556889999999988887642  68899999864 322  2233 2345567889998 5887776


Q ss_pred             EcCC-CeEEEEEcC
Q psy519          196 GGED-GLVLTHELT  208 (351)
Q Consensus       196 ~~~d-g~i~i~d~~  208 (351)
                      +..+ +.|..|+..
T Consensus       284 ~~~~g~~v~~~~P~  297 (355)
T 3sre_A          284 CHPNGMRIFFYDAE  297 (355)
T ss_dssp             EESCHHHHHSCCTT
T ss_pred             ecCCceEEEEECCC
Confidence            6533 344445543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.88  E-value=0.0091  Score=50.86  Aligned_cols=219  Identities=13%  Similarity=0.064  Sum_probs=122.7

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCe-eeEEe---eCCCCCeEEEEEeCC---CCEEEEEeC----C----CcE
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMY-PLRIF---VGHKQDVTCARFHPK---ITYIGTGSY----D----KAV  115 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~-~~~~~---~~~~~~i~~i~~~~~---~~~l~~~~~----d----g~i  115 (351)
                      ...+.++|.|+|.++.+..++.|++++. +++ .+..+   .........|+++|+   +..|+++..    +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3567899999999977778899999973 444 22221   122346889999997   445544432    2    567


Q ss_pred             EEEeCCCC--c-----ee-EEecc-CCCCeEEEEEccCCCEEEEEecC----------CCCCeEEEEEccCC--------
Q psy519          116 RLWSITDG--A-----SV-RVFSD-HVSPVLSIAFSPCGKYLASGGTG----------SYDKAVRLWSITDG--------  168 (351)
Q Consensus       116 ~i~d~~~~--~-----~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~----------~~d~~i~i~d~~~~--------  168 (351)
                      ..|+....  .     .+ ..+.. .......++|.|+|.++++.+..          ...+.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77876643  1     11 11221 11234579999999877764321          01245666665321        


Q ss_pred             -ceeEEeccCCCCEEEEEECC-CCcEEEEEcCCC---eEEEEEcCCCc------------------EEEEeeccCCCCEE
Q psy519          169 -ASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDG---LVLTHELTTGR------------------VISRFHLQEHEPVT  225 (351)
Q Consensus       169 -~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~------------------~~~~~~~~~~~~v~  225 (351)
                       ..+.. .++.. ...++|+| ++.++++-...+   .|.+..  .+.                  .+..+. .....+.
T Consensus       188 ~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap~  262 (354)
T 3a9g_A          188 NSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAPS  262 (354)
T ss_dssp             TCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCEE
T ss_pred             CCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCCc
Confidence             11221 23333 45799999 666555543322   243332  111                  111110 2234678


Q ss_pred             EEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-ceeee--------eecceeEEecCCceeee
Q psy519          226 SLVWS-------VTGETLVTGSLTGTVQFYGWPSA-SKIGI--------GVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       226 ~~~~~-------~~~~~l~~~~~dg~i~i~~~~~~-~~~~~--------~~~~~~~~s~~~~~~~~  275 (351)
                      .++|.       .+|.++++.-..+.|...++... +....        ..+..+++.|||...++
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence            88884       46777776666788988888753 22111        23456778888854433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.85  E-value=0.0086  Score=49.59  Aligned_cols=180  Identities=12%  Similarity=0.072  Sum_probs=95.6

Q ss_pred             CcEEEEeCCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCc---eeEEe--ccCCCCeEE
Q psy519           71 TTARLWSLEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGA---SVRVF--SDHVSPVLS  138 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~--~~~~~~i~~  138 (351)
                      ..+.+||+.+.+-...  +.........+.  .++..++.|+.+     ..+.+||+.+.+   ....-  .........
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            4688999887653321  111112222222  256677777754     469999998776   33321  111122222


Q ss_pred             EEEccCCCEEEEEecCCC--CCeEEEEEccCCc--eeEEeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCC
Q psy519          139 IAFSPCGKYLASGGTGSY--DKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTT  209 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  209 (351)
                      +.+  ++.+++.|+....  ...+.+||+.+.+  .+..+.........+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            233  5677777764211  2468899987754  22222211112222222  67777777654     4588999887


Q ss_pred             CcEEEEeeccCCC-CEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeee
Q psy519          210 GRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIGI  258 (351)
Q Consensus       210 ~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~  258 (351)
                      .+-...-...... ....+.+  ++++++.|+.+     ..+.+||..+.+-...
T Consensus       185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            6544322212211 1122222  56777777654     4689999988765443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.81  E-value=0.013  Score=50.47  Aligned_cols=225  Identities=13%  Similarity=0.151  Sum_probs=145.8

Q ss_pred             CCceEEEecCCccCC--CccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy519           34 QKNLQSRYLPYYTSG--HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY  111 (351)
Q Consensus        34 ~~~i~i~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  111 (351)
                      ..+|.|.|+......  ..-.--+.-.+|..+.++--...++.|+|+++.+.+..+.-. ++|.-=.|-.+ +.|+..+ 
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT-  123 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-  123 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-
T ss_pred             CCeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-
Confidence            347888888765111  111112345678777743334789999999999888877644 45656667543 3455444 


Q ss_pred             CCcEEEEeCCC-CceeEEeccC----CCCeEEEEEccCCCEEEEEecC----CCCCeEEEEEccCCceeEEeccCCCCEE
Q psy519          112 DKAVRLWSITD-GASVRVFSDH----VSPVLSIAFSPCGKYLASGGTG----SYDKAVRLWSITDGASVRVFSDHVSPVL  182 (351)
Q Consensus       112 dg~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~i~  182 (351)
                      +..|+-|++.. ..+.+.+..|    ...|.....+++.++++..+-.    ...|.+.+|..+.+ .-+.+++|.....
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred             CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence            57899999974 3455666443    3577888889999998866531    12578999997544 4566777765554


Q ss_pred             EEEECCCC---cEEEEEcC---CCeEEEEEcCCC--------cEEEEeeccC---CCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          183 SIAFSPCG---KYLASGGE---DGLVLTHELTTG--------RVISRFHLQE---HEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       183 ~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~--------~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      .+.+..+.   ..+..+..   .+.+++.++...        +....+..+.   ..-..++..++....+..-+.-|.+
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence            44443211   23444433   378999988532        1111222222   2457788999988899999999999


Q ss_pred             EEEeCCCCceeeeeecc
Q psy519          246 QFYGWPSASKIGIGVYP  262 (351)
Q Consensus       246 ~i~~~~~~~~~~~~~~~  262 (351)
                      ++||++++..+...++.
T Consensus       283 ~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          283 HLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             EEEETTTCCEEEEEECC
T ss_pred             EEEecccceeeeeeccc
Confidence            99999999988776553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.73  E-value=0.0049  Score=52.91  Aligned_cols=142  Identities=14%  Similarity=0.136  Sum_probs=93.2

Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeeeEEeeCC----CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-----------
Q psy519           60 SKGLALTGSRDTTARLWSLEQMYPLRIFVGH----KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-----------  124 (351)
Q Consensus        60 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------  124 (351)
                      .+|.-+....++.||.-++......+.+...    -..+..+..+|+|++|+..+ +..|.+..+..+.           
T Consensus        30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            3444434444577777777644344444432    22577899999999999876 5689998887322           


Q ss_pred             -eeEEecc------CCCCeEEEEEccC---CCEEEEEecCCCCCeEEEEEccCCc-eeEEec---------cCCCCEEEE
Q psy519          125 -SVRVFSD------HVSPVLSIAFSPC---GKYLASGGTGSYDKAVRLWSITDGA-SVRVFS---------DHVSPVLSI  184 (351)
Q Consensus       125 -~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~~~d~~i~i~d~~~~~-~~~~~~---------~~~~~i~~~  184 (351)
                       ..+.+.-      ...+|..+.|+|-   +..|++-..   |+.|++||+.... ....++         .....+.++
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence             1112211      2478999999994   457777777   9999999998631 111221         233578899


Q ss_pred             EECCCCcEEEEEc--CCCeEEEE
Q psy519          185 AFSPCGKYLASGG--EDGLVLTH  205 (351)
Q Consensus       185 ~~~~~~~~l~~~~--~dg~i~i~  205 (351)
                      +|.+++-.|++.+  ++|.|+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999887777754  78887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.70  E-value=0.015  Score=48.11  Aligned_cols=187  Identities=14%  Similarity=0.135  Sum_probs=96.0

Q ss_pred             EEEeCC----CcEEEEeCCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeEEec--c
Q psy519           65 LTGSRD----TTARLWSLEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGASVRVFS--D  131 (351)
Q Consensus        65 ~~~~~d----~~i~vw~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--~  131 (351)
                      +.|+.+    ..+..||+.+.+-...  +.........+.+  ++..++.|+.+     ..+..||..+.+....-.  .
T Consensus        20 v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~   97 (302)
T 2xn4_A           20 VVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD   97 (302)
T ss_dssp             EECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             EECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc
Confidence            555543    4588889887653322  1111112222222  56677777754     358899988776433221  1


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCC--CCeEEEEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcCC-------C
Q psy519          132 HVSPVLSIAFSPCGKYLASGGTGSY--DKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGED-------G  200 (351)
Q Consensus       132 ~~~~i~~~~~~~~~~~l~~~~~~~~--d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------g  200 (351)
                      .......+.+  ++.+++.|+....  -..+.+||+.+.+=...  +.........+.+  ++++++.|+.+       .
T Consensus        98 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A           98 RRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             CCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECC
T ss_pred             cccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcccc
Confidence            1112222223  5677777775110  13588899876542221  1111111122222  56777766542       3


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeee
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIGI  258 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~  258 (351)
                      .+.+||+.+.+-...-.......-.+++. -++++++.|+.+     ..+.+||..+.+-...
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  235 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV  235 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence            58899998765443222121111112222 256777777654     4689999988755443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.70  E-value=0.0069  Score=50.61  Aligned_cols=220  Identities=10%  Similarity=-0.024  Sum_probs=108.3

Q ss_pred             EEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeC-----C------CcEEEEeCCCCeeeEE--
Q psy519           27 VLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSR-----D------TTARLWSLEQMYPLRI--   86 (351)
Q Consensus        27 ~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~-----d------~~i~vw~~~~~~~~~~--   86 (351)
                      +++.|+  ..+..||..+.      ...............++.+ +.|+.     .      ..+.+||+.+.+-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            445555  46888888776      1111112222223345555 77773     1      1277889887653221  


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEecCC-
Q psy519           87 FVGHKQDVTCARFHPKITYIGTGSYD--------KAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGS-  155 (351)
Q Consensus        87 ~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~-  155 (351)
                      +.........+.+  ++..++.|+.+        ..+.+||+.+.+-...-  .........+.  .++++++.|+... 
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence            1111111122222  56677777632        46899999877543221  11111122222  3566777776411 


Q ss_pred             --CCCeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcCCC-----eEEEEEcCCCcEEEEeeccCCCCEEE
Q psy519          156 --YDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGEDG-----LVLTHELTTGRVISRFHLQEHEPVTS  226 (351)
Q Consensus       156 --~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~  226 (351)
                        .-..+.+||+.+.+=  +..+.........+.+  ++++++.|+.++     .+.+||+.+.+-...-.......-.+
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence              124689999876531  1111111111222222  667777776543     58889988765443222121111112


Q ss_pred             EEEcCCCCEEEEEeCC--------------CeEEEEeCCCCce
Q psy519          227 LVWSVTGETLVTGSLT--------------GTVQFYGWPSASK  255 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~~  255 (351)
                      ++. -++++++.|+.+              ..+.+||..+.+-
T Consensus       239 ~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          239 LVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             EEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            222 256667777653              2366777776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.69  E-value=0.012  Score=48.91  Aligned_cols=224  Identities=11%  Similarity=-0.005  Sum_probs=115.2

Q ss_pred             ccEEEEecCC----CceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeC----C-----CcEEEEeCCCCee
Q psy519           25 EDVLANLESQ----KNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSR----D-----TTARLWSLEQMYP   83 (351)
Q Consensus        25 ~~~l~~~~~~----~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~----d-----~~i~vw~~~~~~~   83 (351)
                      +.+++.|+.+    ..+.+||....       .......- +++.. ++.+ +.|+.    +     ..+.+||+.+.+-
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            6777887742    36788887765       11111111 22222 4555 66665    2     4688999887653


Q ss_pred             eEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEecC
Q psy519           84 LRI--FVGHKQDVTCARFHPKITYIGTGSYD-----KAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        84 ~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      ...  +.........+.+  +++.++.|+.+     ..+..||+.+.+....-  ......-..+.+  ++.+++.|+..
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            322  1111222222333  56777776643     46889998876543321  111112222333  56777777652


Q ss_pred             CC--CCeEEEEEccCCceeE--EeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          155 SY--DKAVRLWSITDGASVR--VFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       155 ~~--d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      ..  ...+.+||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.......-.
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~  256 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL  256 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce
Confidence            11  2468999987653111  11111111222333  67777777654     46899999876543321111111111


Q ss_pred             EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceee
Q psy519          226 SLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIG  257 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~  257 (351)
                      +++. -++++++.|+.+     ..+.+||..+.+-..
T Consensus       257 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          257 GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            2222 256777777643     467888887765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.68  E-value=0.02  Score=48.76  Aligned_cols=220  Identities=12%  Similarity=0.076  Sum_probs=116.5

Q ss_pred             ceEEEEECCCCc-EEEEeCCCcEEEEeCCCCeeeEEe-------eCCCCCeEEEEEeCC---CCEEEEEe-C-------C
Q psy519           52 TVWSVEACSKGL-ALTGSRDTTARLWSLEQMYPLRIF-------VGHKQDVTCARFHPK---ITYIGTGS-Y-------D  112 (351)
Q Consensus        52 ~i~~~~~~~~~~-~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~i~~i~~~~~---~~~l~~~~-~-------d  112 (351)
                      ..+.|+|.|+|+ ++.+...+.|++++.. ++....+       .........++++|+   +..|+.+. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999999 8777788999999854 3321111       122345789999995   44444432 2       2


Q ss_pred             CcEEEEeCCCC--c--eeE-Eecc------CCCCeEEEEEccCCCEEEEEecC----------CCCCeEEEEEccCCc--
Q psy519          113 KAVRLWSITDG--A--SVR-VFSD------HVSPVLSIAFSPCGKYLASGGTG----------SYDKAVRLWSITDGA--  169 (351)
Q Consensus       113 g~i~i~d~~~~--~--~~~-~~~~------~~~~i~~~~~~~~~~~l~~~~~~----------~~d~~i~i~d~~~~~--  169 (351)
                      ..|..+++...  .  ... .+..      .......++|.|||.+.++.+..          ...+.|.-+|....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666432  1  111 1111      11123579999999666654331          012467666754320  


Q ss_pred             ----------eeEEec-cCCCCEEEEEECC-CCcEEEEEcC-CCeEEEEEcCCCcE------------------------
Q psy519          170 ----------SVRVFS-DHVSPVLSIAFSP-CGKYLASGGE-DGLVLTHELTTGRV------------------------  212 (351)
Q Consensus       170 ----------~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~------------------------  212 (351)
                                ....+. ++ .....++|+| ++.++++-.. ++.=.|.-+..+..                        
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                      111111 23 3467899999 5655444221 11111211111110                        


Q ss_pred             -----EEEeeccCCCCEEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeee--------eecceeEEecCCce
Q psy519          213 -----ISRFHLQEHEPVTSLVWSV-------TGETLVTGSLTGTVQFYGWPSASKIGI--------GVYPRCAAQPVGFE  272 (351)
Q Consensus       213 -----~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~~~~~~~~~~~--------~~~~~~~~s~~~~~  272 (351)
                           ...+...++..+..+.|..       +++++++.-..+.|...++..++....        ..+..+++.|+|..
T Consensus       257 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l  336 (353)
T 2g8s_A          257 VAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL  336 (353)
T ss_dssp             CTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred             CCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence                 0001112234567788864       466666666678888888776543322        13445777788764


Q ss_pred             e
Q psy519          273 A  273 (351)
Q Consensus       273 ~  273 (351)
                      .
T Consensus       337 y  337 (353)
T 2g8s_A          337 Y  337 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.66  E-value=0.021  Score=48.56  Aligned_cols=221  Identities=14%  Similarity=0.041  Sum_probs=124.3

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc--c------CCCccceEEEEECCC----CcE-EEEeC---C----C
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--T------SGHDMTVWSVEACSK----GLA-LTGSR---D----T   71 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~------~~~~~~i~~~~~~~~----~~~-~~~~~---d----~   71 (351)
                      .....++|.|+  |+++++ ..+|.|++++....  .      .........++++|+    +.+ ++-..   +    .
T Consensus        29 ~~P~~ia~~pd--G~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGG--GRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEET--TEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCC--CeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999  986665 45688988864321  0      112345789999997    555 44332   3    5


Q ss_pred             cEEEEeCCCC-------eee-EEeeC-CCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCc-----
Q psy519           72 TARLWSLEQM-------YPL-RIFVG-HKQDVTCARFHPKITYIGTGSY-------------DKAVRLWSITDGA-----  124 (351)
Q Consensus        72 ~i~vw~~~~~-------~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-----  124 (351)
                      .|..|+....       +.+ ..+.. .......++|.|||.++++.+.             .|.|.-++....-     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776643       111 11221 1112457999999987766432             2456666654210     


Q ss_pred             --eeEEe-ccCCCCeEEEEEcc-CCCEEEEEecCCCC--CeEEEEEccCC------------------ceeEEeccCCCC
Q psy519          125 --SVRVF-SDHVSPVLSIAFSP-CGKYLASGGTGSYD--KAVRLWSITDG------------------ASVRVFSDHVSP  180 (351)
Q Consensus       125 --~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~~~d--~~i~i~d~~~~------------------~~~~~~~~~~~~  180 (351)
                        ....+ .++ .....++|+| +++++++ ..+. +  ..|.+..  .+                  ..+..+......
T Consensus       186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~-d~g~-~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          186 FPNSPIWSYGH-RNPQGIDWHRASGVMVAT-EHGP-VGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             STTCCEEEECC-SCCCEEEECTTTCCEEEE-ECCS-SSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCcEEEEcc-CCcceEEEeCCCCCEEEE-ecCC-CCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence              01111 223 2346799999 5554444 3311 1  1233322  11                  122333112345


Q ss_pred             EEEEEEC-------CCCcEEEEEcCCCeEEEEEcCCC-cEE--EEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          181 VLSIAFS-------PCGKYLASGGEDGLVLTHELTTG-RVI--SRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       181 i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ...++|.       .+|+++++.-..+.|...++... +..  ..+.......+..+++.|||.+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            6788884       46777777777788988888753 332  222211235789999999998666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.59  E-value=0.023  Score=47.09  Aligned_cols=187  Identities=12%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             EEEeC--CCcEEEEeCCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCCceeEEe--ccCCC
Q psy519           65 LTGSR--DTTARLWSLEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSYD----KAVRLWSITDGASVRVF--SDHVS  134 (351)
Q Consensus        65 ~~~~~--d~~i~vw~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~--~~~~~  134 (351)
                      +.|+.  ...+.+||..+.+-...  +.........+.+  ++..++.|+.+    ..+..||+.+.+....-  .....
T Consensus        16 ~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           16 ALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            66665  36789999987653321  1111222222222  56677777754    67889999887643332  11112


Q ss_pred             CeEEEEEccCCCEEEEEecC---CCCCeEEEEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcC---------CC
Q psy519          135 PVLSIAFSPCGKYLASGGTG---SYDKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGE---------DG  200 (351)
Q Consensus       135 ~i~~~~~~~~~~~l~~~~~~---~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------dg  200 (351)
                      ....+.+  ++.+++.|+..   .....+.+||..+.+=...  +.........+.+  ++++++.|+.         -.
T Consensus        94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred             ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence            2222233  66777777651   1125689999877642221  1111111122222  5676676653         34


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeee
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIGI  258 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~  258 (351)
                      .+.+||+.+.+-...-.......-.+++.. ++++++.|+.+     ..+.+||..+.+-...
T Consensus       170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             eEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence            588999987754332221211111222222 56677776653     4689999988754433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.45  E-value=0.082  Score=50.04  Aligned_cols=228  Identities=10%  Similarity=0.005  Sum_probs=137.1

Q ss_pred             ccceEEeeecCCccccEEEEecCCCceEEEecCCc--c----CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519           11 HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--T----SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        11 ~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~----~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ...|.++.-..+  |. |..|+.+| +..||-...  .    ......|.++.-..+|.+-.++.+| +..||..+.+..
T Consensus        21 ~n~V~~I~qD~~--G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           21 ASVVSCFLQDSE--GL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CCCEEEEEECTT--SC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEEC
T ss_pred             cceEEEEEECCC--CC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEE
Confidence            457888888877  65 44455666 555653321  1    1224568888888888885666554 789998876543


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec----cCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS----DHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      .........|.++... ++ .|..++.+ -+..+|..+++......    .....|.++...++|.+.+ +.    ++-+
T Consensus        96 ~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt----~~Gl  167 (758)
T 3ott_A           96 QPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GT----YNGL  167 (758)
T ss_dssp             CCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EE----TTEE
T ss_pred             CcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-Ee----CCCH
Confidence            2111123357776543 44 56666655 58889987655432211    1235688888887777655 33    3457


Q ss_pred             EEEEccCCceeEEecc-----CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCE
Q psy519          161 RLWSITDGASVRVFSD-----HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  235 (351)
                      ..||..+++.......     ....|.++...+++..|..|+. +-+..+|..+++... +.......|.++...++|.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~l  245 (758)
T 3ott_A          168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDL  245 (758)
T ss_dssp             EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEECTTCCE
T ss_pred             hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCE
Confidence            8888766543221111     1224888888777776666664 458889987665332 21112345888888888876


Q ss_pred             EEEEeCCCeEEEEeCCCCce
Q psy519          236 LVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~  255 (351)
                      .+. +. +-+.+++..+++.
T Consensus       246 Wig-T~-~Gl~~~~~~~~~~  263 (758)
T 3ott_A          246 LAG-TD-NGLYVYHNDTTPL  263 (758)
T ss_dssp             EEE-ET-TEEEEECCTTSCC
T ss_pred             EEE-eC-CceeEEecCCCcE
Confidence            554 44 4578888766543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.45  E-value=0.046  Score=47.14  Aligned_cols=234  Identities=14%  Similarity=0.097  Sum_probs=150.6

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc--cCCC--ccceEEEEECCCCcEEEEeCCCcEEEEeCCC-CeeeEEeeCCC
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY--TSGH--DMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGHK   91 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~~--~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~~   91 (351)
                      ...+|.  .+.||.-. ...++++|++..  +..|  ...|.--.|-.+..++.. .+..|+-|+++. ..+++.+..|.
T Consensus        71 AIMnP~--~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSS--SSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCC--CcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecch
Confidence            567788  77777664 678999999886  3332  345666677766666322 346899999974 34666665543


Q ss_pred             ----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccC---CCEEEEEecCCCC
Q psy519           92 ----QDVTCARFHPKITYIGTGSY-------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---GKYLASGGTGSYD  157 (351)
Q Consensus        92 ----~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~d  157 (351)
                          ..|..-..+++.++++..+-       .|.+.+|..+.+ ..+.+.+|......+...-+   .+.++.+......
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence                46777777888888765432       478899998643 45666666554433333211   1244545442224


Q ss_pred             CeEEEEEccCC--------ceeEEe-c---cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          158 KAVRLWSITDG--------ASVRVF-S---DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       158 ~~i~i~d~~~~--------~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +.+++.++...        +....+ -   ....-..++..++.-..++.-+.-|.+++||+.++.++..-+... .+|-
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~-~~iF  304 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIF  304 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEE
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC-CceE
Confidence            78999998543        111111 1   123345678888877888888999999999999999998776543 4555


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy519          226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKI  256 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  256 (351)
                      .-+.+....-++.....|.|.--.++..+.+
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             EecccCCCCcEEEEccCceEEEEEEccccch
Confidence            5555555555566668888877777665443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.39  E-value=0.0065  Score=47.22  Aligned_cols=144  Identities=13%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee------EEe-ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           92 QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV------RVF-SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        92 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      ..+..++|+|++.+.++  .+|.++-.+..+....      ..+ ...-..-.++.|.|+|.+.++  .   ||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~---dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--S---KDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--E---TTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--C---CCEEEEeC
Confidence            36779999999886666  6788777776552221      111 000111367899999988887  4   89988877


Q ss_pred             ccCCce-------eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCc------EEEEeeccCCCCEEEEEEcC
Q psy519          165 ITDGAS-------VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR------VISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       165 ~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~  231 (351)
                      --+...       ...-...=..+..+.+.|+|.+.++.  |+.++-....++.      ....+-...-...+.+.|.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            532110       11111111357899999999988777  7765433222111      01111111223455677888


Q ss_pred             CCCEEEEEeCCCeEE
Q psy519          232 TGETLVTGSLTGTVQ  246 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~  246 (351)
                      ++.+.++.  +|.++
T Consensus       192 ~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          192 VGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TSCEEEEE--TTEEE
T ss_pred             CCcEEEEe--CCeEE
Confidence            88877666  66443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.37  E-value=0.03  Score=46.49  Aligned_cols=179  Identities=11%  Similarity=-0.017  Sum_probs=92.6

Q ss_pred             CcEEEEeCCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeC----C-----CcEEEEeCCCCceeEEe--ccCCCCeE
Q psy519           71 TTARLWSLEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSY----D-----KAVRLWSITDGASVRVF--SDHVSPVL  137 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~--~~~~~~i~  137 (351)
                      ..+.+||+.+.+-...  +........ ++.. ++.+++.|+.    +     ..+.+||+.+.+....-  ........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLA-GCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccce-EEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            4688888887653322  111111222 2222 5667777765    2     46889998876543321  11112222


Q ss_pred             EEEEccCCCEEEEEecCC--CCCeEEEEEccCCceeE--EeccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcC
Q psy519          138 SIAFSPCGKYLASGGTGS--YDKAVRLWSITDGASVR--VFSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELT  208 (351)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~--~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  208 (351)
                      .+.+  ++++++.|+...  .-..+.+||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||+.
T Consensus       117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  192 (308)
T 1zgk_A          117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE  192 (308)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence            2333  667777776411  02468899987653211  11111111222333  56777777654     458899987


Q ss_pred             CCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceee
Q psy519          209 TGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIG  257 (351)
Q Consensus       209 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~  257 (351)
                      +.+-...-..... .....+.+  ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            7654322111111 11222232  56777777654     569999998875444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.37  E-value=0.047  Score=45.48  Aligned_cols=185  Identities=9%  Similarity=-0.022  Sum_probs=97.1

Q ss_pred             EEEeCCCcEEEEeCCCCeeeE-EeeCCCCCeEEEEEeCCCCEEEEEeC-----C------CcEEEEeCCCCceeEEeccC
Q psy519           65 LTGSRDTTARLWSLEQMYPLR-IFVGHKQDVTCARFHPKITYIGTGSY-----D------KAVRLWSITDGASVRVFSDH  132 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~~~~~  132 (351)
                      +.|+  ..+..||..+++-.. .+..............++..++.|+.     .      ..+..||..+.+.... ...
T Consensus         9 ~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~   85 (315)
T 4asc_A            9 MISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPL   85 (315)
T ss_dssp             EEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCB
T ss_pred             EEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCC
Confidence            5555  679999998876432 11111122233333457778888873     1      1278899887764322 111


Q ss_pred             CCC---eEEEEEccCCCEEEEEecC-----CCCCeEEEEEccCCceeEEec---cCCCCEEEEEECCCCcEEEEEcC-C-
Q psy519          133 VSP---VLSIAFSPCGKYLASGGTG-----SYDKAVRLWSITDGASVRVFS---DHVSPVLSIAFSPCGKYLASGGE-D-  199 (351)
Q Consensus       133 ~~~---i~~~~~~~~~~~l~~~~~~-----~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-d-  199 (351)
                      ..+   ...+.+  ++..++.|+..     .....+.+||..+.+ -..+.   ........+.  -++++++.|+. + 
T Consensus        86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence            111   122222  56677777641     123568999987753 22221   1111112222  25677777765 2 


Q ss_pred             ----CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeee
Q psy519          200 ----GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-----TVQFYGWPSASKIGI  258 (351)
Q Consensus       200 ----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~  258 (351)
                          ..+.+||+.+.+-...-.......-.+++. -++++++.|+.++     .+.+||..+.+-...
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence                468899988765333211111111112222 2667777777653     588999988755443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.37  E-value=0.046  Score=54.27  Aligned_cols=224  Identities=13%  Similarity=0.140  Sum_probs=137.5

Q ss_pred             CCceEEEecCCccCCCc--cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy519           34 QKNLQSRYLPYYTSGHD--MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY  111 (351)
Q Consensus        34 ~~~i~i~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  111 (351)
                      ..+|.|.|+......-.  -.--+.-.+|..++++--...++.|+|+++.+.+..+.- ..+|.-=.|-.+ +.|+..+ 
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-  123 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-  123 (1630)
T ss_pred             CceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-
Confidence            34788888877521111  112234457777774444578999999998877766653 445666667543 3444443 


Q ss_pred             CCcEEEEeCCC-CceeEEeccC----CCCeEEEEEccCCCEEEEEecC----CCCCeEEEEEccCCceeEEeccCCCCEE
Q psy519          112 DKAVRLWSITD-GASVRVFSDH----VSPVLSIAFSPCGKYLASGGTG----SYDKAVRLWSITDGASVRVFSDHVSPVL  182 (351)
Q Consensus       112 dg~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~i~  182 (351)
                      +..|+.|++.. ..+.+.+..|    ...|..-..+++.++++..+-.    ...|.+.+|....+ ..+.+.+|.....
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~  202 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence            56799999964 3344444433    4678888889999998866542    23588999997644 3344556655443


Q ss_pred             EEEECC---CCcEEEEEcC---CCeEEEEEcCCC---cEE-----EEeeccC---CCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          183 SIAFSP---CGKYLASGGE---DGLVLTHELTTG---RVI-----SRFHLQE---HEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       183 ~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~---~~~-----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      .+....   ....+..+..   .+.++|.++...   ...     ..+..+.   ..-..++..++....+..-+.-|.+
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            333321   1123332221   367888887432   111     0111111   2345677888888888888899999


Q ss_pred             EEEeCCCCceeeeeec
Q psy519          246 QFYGWPSASKIGIGVY  261 (351)
Q Consensus       246 ~i~~~~~~~~~~~~~~  261 (351)
                      ++||+.++..+...++
T Consensus       283 ~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          283 HLYDLETGTCIYMNRI  298 (1630)
T ss_pred             EEEecccchhhhhccc
Confidence            9999999988766554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.30  E-value=0.032  Score=46.54  Aligned_cols=220  Identities=12%  Similarity=0.019  Sum_probs=106.5

Q ss_pred             cEEEEecCCCceEEEecCCc------cCC-CccceEEEEECCCCcE-EEEeC----CC-------cEEEEeCCCCeeeEE
Q psy519           26 DVLANLESQKNLQSRYLPYY------TSG-HDMTVWSVEACSKGLA-LTGSR----DT-------TARLWSLEQMYPLRI   86 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~------~~~-~~~~i~~~~~~~~~~~-~~~~~----d~-------~i~vw~~~~~~~~~~   86 (351)
                      .+++.|+.  .+..||....      ... ....-.+++ ..++.+ +.|+.    ++       .+.+||..+.+-...
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            45555553  3778887766      111 111112333 345555 77773    11       177888877653321


Q ss_pred             --eeCCCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCceeEEeccCCCCe--EEEEEccCCCEEEEEecCC
Q psy519           87 --FVGHKQDVTCARFHPKITYIGTGSYD-------KAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        87 --~~~~~~~i~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~~~  155 (351)
                        +...........+  ++..++.|+.+       ..+.+||+.+.+....-. ...+.  .+++. .++.+++.|+...
T Consensus        94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~  169 (318)
T 2woz_A           94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTD  169 (318)
T ss_dssp             SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEES
T ss_pred             CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCC
Confidence              1111122222222  56777777754       358889988776443321 11111  11222 3667777776411


Q ss_pred             ---CCCeEEEEEccCCceeEE--eccCCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          156 ---YDKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       156 ---~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                         .-..+.+||+.+.+=...  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.......-.
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  247 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI  247 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence               124689999877642111  1111111122222  56777777643     35778998876543321111111111


Q ss_pred             EEEEcCCCCEEEEEeCC--------------CeEEEEeCCCCce
Q psy519          226 SLVWSVTGETLVTGSLT--------------GTVQFYGWPSASK  255 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~~  255 (351)
                      +++. .++++++.|+.+              ..+.+||..+.+-
T Consensus       248 ~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          248 SLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             EEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             EEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence            2222 246666666543              3466777666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.25  E-value=0.071  Score=44.99  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=121.6

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEEEECCC----CcE-EEEe--CCCcE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSVEACSK----GLA-LTGS--RDTTA   73 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~~~~~~----~~~-~~~~--~d~~i   73 (351)
                      .....++|.|+  |.++++-...|.|++++....           ..........|+++|+    +.+ ++-+  .++.|
T Consensus        32 ~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           32 NSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             SSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            44578999999  998887755899998876433           1123456789999995    555 4322  44556


Q ss_pred             EEEeCCCC----------eeeE-Eee-CCCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCc----
Q psy519           74 RLWSLEQM----------YPLR-IFV-GHKQDVTCARFHPKITYIGTGSY-------------DKAVRLWSITDGA----  124 (351)
Q Consensus        74 ~vw~~~~~----------~~~~-~~~-~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~----  124 (351)
                      .-|.+..+          +.+. .+. .....-..|+|.|||.+.++.+.             .|.|.-.+....-    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            66655441          1111 121 11112356999999987777542             3555555554220    


Q ss_pred             ---eeEEe-ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc------------------eeEEeccCCCCEE
Q psy519          125 ---SVRVF-SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA------------------SVRVFSDHVSPVL  182 (351)
Q Consensus       125 ---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~~~~~~i~  182 (351)
                         ....+ .++. ....++|+|+|.+.++= .+ .++.=.|--+..+.                  .+..+..+.....
T Consensus       190 Pf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d-~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~  266 (347)
T 3das_A          190 PFPGSPVYSYGHR-NVQGLAWDDKQRLFASE-FG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS  266 (347)
T ss_dssp             SSTTCCEEEBCCS-BCCEEEECTTCCEEEEE-CC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred             CCCCCeEEeeCCC-CcceEEECCCCCEEEEe-cC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence               01112 2343 34679999987665542 21 12222222222221                  1222222223456


Q ss_pred             EEEECCCCcEEEEEcCCCeEEEEEcCCCcEE---EEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          183 SIAFSPCGKYLASGGEDGLVLTHELTTGRVI---SRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      .++|. ++..+...-..+.|....+......   ..+.......+..++..|||.++++..
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            67776 4666666666666766666544321   122112235788888888887665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.18  E-value=0.033  Score=43.35  Aligned_cols=141  Identities=11%  Similarity=-0.043  Sum_probs=81.5

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee------EEee--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL------RIFV--GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD  122 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~------~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  122 (351)
                      ..+..++|+|+|.+... .+|.++-.+..+.+..      ..+-  +-. .-.++.|.|+|.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            35679999999998443 7777777776542211      1110  111 1367889999988777  469998888644


Q ss_pred             Ccee-------EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc------eeEEe-ccCCCCEEEEEECC
Q psy519          123 GASV-------RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA------SVRVF-SDHVSPVLSIAFSP  188 (351)
Q Consensus       123 ~~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~------~~~~~-~~~~~~i~~~~~~~  188 (351)
                      ...-       ..-...=..+..+.+.|+|.+.++.     |+.++-...-++.      ....+ ...-...+-+.|.|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-----dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-----GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-----TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-----CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            2211       1111122467899999999988876     4554332211111      01111 12222344567888


Q ss_pred             CCcEEEEEcCCCeE
Q psy519          189 CGKYLASGGEDGLV  202 (351)
Q Consensus       189 ~~~~l~~~~~dg~i  202 (351)
                      ++.+.++.  +|.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            88877766  6643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0057  Score=51.40  Aligned_cols=190  Identities=9%  Similarity=-0.015  Sum_probs=107.1

Q ss_pred             CcEEEEeCCCcEEEEeCCCCeeeEEeeCC-CCCeEEEEEe--C-CCCEEEEE-eCCCcEEEEeCCCCceeEEecc----C
Q psy519           62 GLALTGSRDTTARLWSLEQMYPLRIFVGH-KQDVTCARFH--P-KITYIGTG-SYDKAVRLWSITDGASVRVFSD----H  132 (351)
Q Consensus        62 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~i~~i~~~--~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~  132 (351)
                      +.++.++.||.|.-+|.++|+.+..+... ..++....-.  + ++..++.. +.||.++.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            45588999999999999999999888654 1222221110  1 22333333 5799999999988865443321    1


Q ss_pred             CCCeEE---EEE-c----cCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCC--CC-----EEEEEEC-----CCCcE
Q psy519          133 VSPVLS---IAF-S----PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHV--SP-----VLSIAFS-----PCGKY  192 (351)
Q Consensus       133 ~~~i~~---~~~-~----~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~-----i~~~~~~-----~~~~~  192 (351)
                      ..++..   ... .    ..+..+++++.   ++.+...|+++|+.+..+....  ..     ..+....     ..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSM---RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEE---EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ccccccCCCceeecccccccCCEEEEEec---CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence            223321   000 0    14567788888   9999999999999998886432  10     0011110     12356


Q ss_pred             EEEEcCCCeEEEEEcCCCcEEEEeeccC--CCCEE-----EEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          193 LASGGEDGLVLTHELTTGRVISRFHLQE--HEPVT-----SLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~-----~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      ++.+..+..+.+.+ ++|+ .-.+....  ...+.     +-..+.|+.+ +.++.||.|.-+|..+++.+-
T Consensus       168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77776666666666 4443 21111000  00000     0001124565 457889999999998887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.03  E-value=0.11  Score=43.08  Aligned_cols=230  Identities=4%  Similarity=-0.074  Sum_probs=122.5

Q ss_pred             ccEEEEec--CCCceEEEecCCccCCCccceEEEEECCCCcE--EEEeCC-------------CcEEEEeCCCCeeeEEe
Q psy519           25 EDVLANLE--SQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA--LTGSRD-------------TTARLWSLEQMYPLRIF   87 (351)
Q Consensus        25 ~~~l~~~~--~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~d-------------~~i~vw~~~~~~~~~~~   87 (351)
                      ++.|....  .++.|+..+.+......-..-.+--++++|..  .+...+             ..|+..++...+... +
T Consensus        25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l  103 (302)
T 3s25_A           25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-L  103 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEEETTSCSCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-E
T ss_pred             CCEEEEEeCCCCceEEEEcCCCCCCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-e
Confidence            66666653  24555555544331000011112345667755  343332             467777877665333 3


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEe--C--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEE
Q psy519           88 VGHKQDVTCARFHPKITYIGTGS--Y--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW  163 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~--~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~  163 (351)
                      ...  .  +..|+++++.|+-..  .  ...|+.-++.... ...+..+..    .+++|+++.|+-.+.  ....|...
T Consensus       104 ~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~--g~~~Iy~~  172 (302)
T 3s25_A          104 DPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNP--KNGQLYRY  172 (302)
T ss_dssp             ECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECT--TTCCEEEE
T ss_pred             ecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeC--CCceEEEE
Confidence            211  1  236777888888765  2  3456666665433 344433322    456778888886653  25788888


Q ss_pred             EccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCC--CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          164 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED--GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       164 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      ++..+.....+.   +... ..+.|++.+|+-...+  ..|..-++.... ...+.   ...+  ..|+|++++|+.++.
T Consensus       173 ~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt---~~~~--~~~~~~g~~Iy~~~~  242 (302)
T 3s25_A          173 DTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT---EANI--EHYNVYGSLIFYQRG  242 (302)
T ss_dssp             ETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS---CSCE--EEEEEETTEEEEEEC
T ss_pred             ECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe---CCCc--ceEEECCCEEEEEEC
Confidence            887665443332   2232 3356888887765433  356666665444 33332   2233  347788888876533


Q ss_pred             --CCeEEEEeCCCCceeeeeecceeEEecCCceeeee
Q psy519          242 --TGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       242 --dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  276 (351)
                        .+.|..-++....+.....-....+++.+..+...
T Consensus       243 ~~~~~i~~~~~DG~~r~~l~~~~~~~i~i~~d~Iy~t  279 (302)
T 3s25_A          243 GDNPALCVVKNDGTGFKELAKGEFCNINVTSQYVYFT  279 (302)
T ss_dssp             SSSCEEEEEETTSCCCEEEEESCEEEEEECSSEEEEE
T ss_pred             CCCcEEEEEECCCCccEEeeCCccceEEEeCCEEEEE
Confidence              46777777765443333222223455555554443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.02  E-value=0.12  Score=43.54  Aligned_cols=222  Identities=13%  Similarity=0.092  Sum_probs=118.0

Q ss_pred             ccceEEEEECCCCcEEEEeC-CCcEEEEeCCCCeee--EEe----eCCCCCeEEEEEeCC---CCEEEEE---eCCCcEE
Q psy519           50 DMTVWSVEACSKGLALTGSR-DTTARLWSLEQMYPL--RIF----VGHKQDVTCARFHPK---ITYIGTG---SYDKAVR  116 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~~~~~~-d~~i~vw~~~~~~~~--~~~----~~~~~~i~~i~~~~~---~~~l~~~---~~dg~i~  116 (351)
                      -...+.|+|.|+|.++.... .|.|++++..+++..  ..+    .........|+++|+   ...|+..   ..+..|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34578999999999966666 899999987655432  111    123456889999995   3344332   2345666


Q ss_pred             EEeCCCC----------cee-EEec-cCCCCeEEEEEccCCCEEEEEecC----------CCCCeEEEEEccCC------
Q psy519          117 LWSITDG----------ASV-RVFS-DHVSPVLSIAFSPCGKYLASGGTG----------SYDKAVRLWSITDG------  168 (351)
Q Consensus       117 i~d~~~~----------~~~-~~~~-~~~~~i~~~~~~~~~~~l~~~~~~----------~~d~~i~i~d~~~~------  168 (351)
                      -|.+..+          +.+ ..+. .....-..|+|.|||.+.++.+..          ...+.|.-.+....      
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            6665541          111 1121 112234569999999877775421          01344555554321      


Q ss_pred             ---ceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCc------------------EEEEeeccCCCCEEE
Q psy519          169 ---ASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGR------------------VISRFHLQEHEPVTS  226 (351)
Q Consensus       169 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~------------------~~~~~~~~~~~~v~~  226 (351)
                         ..+.. .+|.. ...++|+|+|.++++=.. ++.=.|--+..+.                  .+..+. .++.....
T Consensus       191 f~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~~ap~G  267 (347)
T 3das_A          191 FPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TDEASPSG  267 (347)
T ss_dssp             STTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TTTCCEEE
T ss_pred             CCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-CCCCCCcc
Confidence               11222 13433 457899998876655422 2212222222221                  111111 11135667


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceee---------eeecceeEEecCCceeee
Q psy519          227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIG---------IGVYPRCAAQPVGFEAAT  275 (351)
Q Consensus       227 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~s~~~~~~~~  275 (351)
                      ++|. ++.++...-..+.|....+.......         ...+..++..|||...++
T Consensus       268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~  324 (347)
T 3das_A          268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV  324 (347)
T ss_dssp             EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred             eEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence            7776 45555555555666666665443211         134456777888765443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.98  E-value=0.088  Score=52.39  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=137.9

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc--cCCC--ccceEEEEECCCCcEEEEeCCCcEEEEeCCC-CeeeEEeeCC-
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY--TSGH--DMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGH-   90 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~~--~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~-   90 (351)
                      ...+|.  .+.||.-. ..+++|++++..  +..|  ...|.--.|-.+..++..+ +..|+.|++.. ..+++.+..| 
T Consensus        71 AIMnP~--~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCC--cceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            567788  77777654 788999999877  3333  4567777888777772222 36799999974 3444444444 


Q ss_pred             ---CCCeEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEc--c-CCCEEEEEecCCCC
Q psy519           91 ---KQDVTCARFHPKITYIGTGS-------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFS--P-CGKYLASGGTGSYD  157 (351)
Q Consensus        91 ---~~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~~~~~d  157 (351)
                         ...|..-..+++.++++..+       -.|.+.+|.++.+ ..+.+.+|......+...  + ..+.++.+......
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               45676777788888776543       2478999987643 334455554433333331  1 12234433331123


Q ss_pred             CeEEEEEccCC---ceeE------E-ecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          158 KAVRLWSITDG---ASVR------V-FSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       158 ~~i~i~d~~~~---~~~~------~-~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +.++|.++...   ....      . +..  ...-..++..++.-..+..-+.-|.+.+||+.++..+..-+... .+|-
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~-~~iF  304 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIF  304 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC-CceE
Confidence            67888887542   1110      0 111  12223467778777778888889999999999999887655332 3344


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          226 SLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                      ..+.+....-++.....|.|.--.+.....
T Consensus       305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             EeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            334333333344444667666665554443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.95  E-value=0.096  Score=44.38  Aligned_cols=225  Identities=11%  Similarity=-0.045  Sum_probs=109.9

Q ss_pred             ccEEEEecC-CCceEEEecCC--c-------cC-CCccceEEEEECCCCcE-EEEeC-C---------CcEEEEeCCCCe
Q psy519           25 EDVLANLES-QKNLQSRYLPY--Y-------TS-GHDMTVWSVEACSKGLA-LTGSR-D---------TTARLWSLEQMY   82 (351)
Q Consensus        25 ~~~l~~~~~-~~~i~i~~~~~--~-------~~-~~~~~i~~~~~~~~~~~-~~~~~-d---------~~i~vw~~~~~~   82 (351)
                      +.+++.|+. ...+..||...  .       .. .....-..+.+  ++++ +.|+. +         ..+.+||+.+.+
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            677777764 35688888863  2       11 11111122222  4555 77765 2         468899998765


Q ss_pred             eeEE--ee-CCCCCeEEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEeC
Q psy519           83 PLRI--FV-GHKQDVTCARFHPKITYIGTGSYD---------------------------------------KAVRLWSI  120 (351)
Q Consensus        83 ~~~~--~~-~~~~~i~~i~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~  120 (351)
                      -...  .. .......++.  .++++++.|+.+                                       ..+.+||+
T Consensus        98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            3322  11 1112222232  467778888754                                       57899999


Q ss_pred             CCCceeEEeccC-CCCe-EEEEEccCCCEEEEEecCC---CCCeEEEEEc--cCCceeEEeccC---CCCEE-EEEECCC
Q psy519          121 TDGASVRVFSDH-VSPV-LSIAFSPCGKYLASGGTGS---YDKAVRLWSI--TDGASVRVFSDH---VSPVL-SIAFSPC  189 (351)
Q Consensus       121 ~~~~~~~~~~~~-~~~i-~~~~~~~~~~~l~~~~~~~---~d~~i~i~d~--~~~~~~~~~~~~---~~~i~-~~~~~~~  189 (351)
                      .+.+....-... ...- .+++.. ++++++.|+...   ....+..||+  .+.+ -..+...   ..... .++. .+
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~-~~  252 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGI-SN  252 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEE-ET
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEE-EC
Confidence            877644332111 1111 223322 566667765311   1345777876  3321 2222111   11111 1222 25


Q ss_pred             CcEEEEEcCC----------------------CeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCCCCEEEEEeCCC---
Q psy519          190 GKYLASGGED----------------------GLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLTG---  243 (351)
Q Consensus       190 ~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg---  243 (351)
                      +++++.|+.+                      ..+.+||+.+.+-...-..... ..-..+  ..++++++.|+.++   
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~  330 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGK  330 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGC
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCC
Confidence            6777777632                      2477899876643332222221 111222  23677777777542   


Q ss_pred             ---eEEEEeCCCCceeee
Q psy519          244 ---TVQFYGWPSASKIGI  258 (351)
Q Consensus       244 ---~i~i~~~~~~~~~~~  258 (351)
                         .+.++++++++.+..
T Consensus       331 ~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          331 AVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEEEEEEEC-CCSCEEE
T ss_pred             EeeeEEEEEEcCcEeEee
Confidence               466668887766544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.94  E-value=0.2  Score=44.69  Aligned_cols=254  Identities=12%  Similarity=0.014  Sum_probs=145.4

Q ss_pred             EEEecCCCceEEEecCCc--------------------------cCC----CccceE--EEEEC---CCCcE-EEEe-CC
Q psy519           28 LANLESQKNLQSRYLPYY--------------------------TSG----HDMTVW--SVEAC---SKGLA-LTGS-RD   70 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~--------------------------~~~----~~~~i~--~~~~~---~~~~~-~~~~-~d   70 (351)
                      +.+|+.+|.++|+-+...                          +..    ..+...  .+.+.   -||++ +.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            668888999999998877                          100    000011  12222   13455 3333 35


Q ss_pred             CcEEEEeCCCCeeeEEeeC-CCCCeEEEEEe--CCCCEEEEEeC-------CCcE------------EEEeCCCCceeEE
Q psy519           71 TTARLWSLEQMYPLRIFVG-HKQDVTCARFH--PKITYIGTGSY-------DKAV------------RLWSITDGASVRV  128 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~-~~~~i~~i~~~--~~~~~l~~~~~-------dg~i------------~i~d~~~~~~~~~  128 (351)
                      ..|...+++..++-+.+.- ....+.+++|-  |+..+++.++.       ||..            ...|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            6677788888776655543 34578888886  67788887765       2321            0112222222222


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCC------------CCCeE-------------------------EEEEccC----
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGS------------YDKAV-------------------------RLWSITD----  167 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~------------~d~~i-------------------------~i~d~~~----  167 (351)
                      +.- .+....+...++|.+.++.+..+            ....+                         .+.|.+.    
T Consensus       233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            111 12333455677888888776421            11124                         4444433    


Q ss_pred             Cc-eeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCC------cE-------EEEeeccCCCCEEEEEEcCC
Q psy519          168 GA-SVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTG------RV-------ISRFHLQEHEPVTSLVWSVT  232 (351)
Q Consensus       168 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~~-------~~~~~~~~~~~v~~~~~~~~  232 (351)
                      +. ....+. -......+..+|||+++++++. +.++.++|++.-      +.       ....  ...-.....+|.++
T Consensus       312 ~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          312 DSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGR  388 (638)
T ss_dssp             CCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSS
T ss_pred             CCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCC
Confidence            11 111111 1223456889999999887764 788999998731      11       2222  23456889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----------ceeeeeecc----------eeEEecCCceeeeeeccceeeEE
Q psy519          233 GETLVTGSLTGTVQFYGWPSA----------SKIGIGVYP----------RCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~----------~~~~~~~~~----------~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      |....+.--|.+|.-|++...          ..+....++          .-.-.|+|++|+++.--+.++.+
T Consensus       389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl  461 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL  461 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred             CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence            965566667999999998753          222222211          12347899999988887777644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.92  E-value=0.19  Score=44.23  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EEecc------CCCCeEEEEEccC---CCEEEEEecCC----
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV--RVFSD------HVSPVLSIAFSPC---GKYLASGGTGS----  155 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~~----  155 (351)
                      -...+.|+|.|+|+++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|+++....    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345679999999987776544457988886555432  22221      2456789999996   66666554310    


Q ss_pred             --C----CCeEEEEEccCC-------ceeE-Eec-cCCCCEEEEEECCCCcEEEEEc
Q psy519          156 --Y----DKAVRLWSITDG-------ASVR-VFS-DHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       156 --~----d~~i~i~d~~~~-------~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                        .    ...|.-|++...       +.+. .+. ........|+|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence              0    135666665432       1111 122 1123478999999998776644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.84  E-value=0.16  Score=42.07  Aligned_cols=188  Identities=7%  Similarity=0.016  Sum_probs=108.1

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC--------------CcEEEEeCCCCceeEEeccCCCC
Q psy519           70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD--------------KAVRLWSITDGASVRVFSDHVSP  135 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~  135 (351)
                      ++.|...+.+... ...+...    .+--+++++..|+.+...              ..|+..++..++... +..  ..
T Consensus        36 ~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~  107 (302)
T 3s25_A           36 NGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP  107 (302)
T ss_dssp             TTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC
T ss_pred             CceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC
Confidence            4556666654433 3333221    123457888888776543              367777777655333 321  11


Q ss_pred             eEEEEEccCCCEEEEEe-cCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEE
Q psy519          136 VLSIAFSPCGKYLASGG-TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVI  213 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  213 (351)
                        +..|++++++|+... ....+..|+..++.... ...+..+..    ..++|+++.|+-.+. ...|...++..+...
T Consensus       108 --~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          108 --CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             --EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             --ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence              236788999988775 11115567777776433 444444432    346777887776554 678888888665433


Q ss_pred             EEeeccCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeeeeecceeEEecCCceeeeee
Q psy519          214 SRFHLQEHEPVTSLVWSVTGETLVTGSLT--GTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLA  277 (351)
Q Consensus       214 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  277 (351)
                       .+. ..  ... ..+.|++.+|+-...+  ..|..-++..........-....++|++..+....
T Consensus       181 -~l~-~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~~~~~~~g~~Iy~~~  241 (302)
T 3s25_A          181 -LFY-DC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQR  241 (302)
T ss_dssp             -EEE-CS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCEEEEEEETTEEEEEE
T ss_pred             -EEe-CC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCcceEEECCCEEEEEE
Confidence             332 22  222 3456999988876543  36777777766544432222345888888876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.73  E-value=0.2  Score=41.65  Aligned_cols=187  Identities=9%  Similarity=0.004  Sum_probs=94.2

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEE-eeCCCCCeEEEEEeCCCCEEEEEeC----CC-------cEEEEeCCCCceeEEe--c
Q psy519           65 LTGSRDTTARLWSLEQMYPLRI-FVGHKQDVTCARFHPKITYIGTGSY----DK-------AVRLWSITDGASVRVF--S  130 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~--~  130 (351)
                      +.|+.  .+..||..+.+-... ...............++..++.|+.    ++       .+..||..+.+....-  .
T Consensus        20 ~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   97 (318)
T 2woz_A           20 LVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP   97 (318)
T ss_dssp             EECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS
T ss_pred             hcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC
Confidence            44443  488999988764431 1111112222233456778888873    11       2778898876643321  1


Q ss_pred             cCCCCeEEEEEccCCCEEEEEecCC----CCCeEEEEEccCCceeEEeccCCCCE--EEEEECCCCcEEEEEcC------
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGTGS----YDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCGKYLASGGE------  198 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~------  198 (351)
                      ........+.+  ++.+++.|+...    ....+.+||+.+.+=. .+.....+.  .+++. .++++++.|+.      
T Consensus        98 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           98 SARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             SCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEESCEEEE-ETTEEEEECCEESSSCB
T ss_pred             ccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCc
Confidence            11111222223  567777777511    0145888998765322 221111111  11222 36677777653      


Q ss_pred             CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeee
Q psy519          199 DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIGI  258 (351)
Q Consensus       199 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~  258 (351)
                      -..+.+||+.+.+-...-.......-.+++. -++++++.|+.+     ..+.+||..+.+-...
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence            2358999998765433222121111122222 256777777643     3578899887754443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.48  E-value=0.33  Score=41.04  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=45.9

Q ss_pred             CCcE-EEEeC-CCcEEEEeCCC--Ce--eeEEee-CCCCCeEEEEEeCCCCEEEEEeC-C---------CcEEEEeCCCC
Q psy519           61 KGLA-LTGSR-DTTARLWSLEQ--MY--PLRIFV-GHKQDVTCARFHPKITYIGTGSY-D---------KAVRLWSITDG  123 (351)
Q Consensus        61 ~~~~-~~~~~-d~~i~vw~~~~--~~--~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~-d---------g~i~i~d~~~~  123 (351)
                      ++++ +.|+. ...+.++|+.+  .+  .+..+. ........+.+  ++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555 66654 34688889863  22  222222 11222222222  5667777765 2         46899999887


Q ss_pred             ceeEEeccC--CCCeEEEEEccCCCEEEEEec
Q psy519          124 ASVRVFSDH--VSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus       124 ~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      +....-...  ...-.+++. .++++++.|+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~  127 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGV  127 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECC
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCc
Confidence            643322111  111122222 46777788775

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.41  E-value=0.29  Score=45.79  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=100.0

Q ss_pred             ccEEEEecCC----CceEEEecCCc----cC--------CCccceEEEEECC-CCcE-EEEeCC------CcEEEEeCCC
Q psy519           25 EDVLANLESQ----KNLQSRYLPYY----TS--------GHDMTVWSVEACS-KGLA-LTGSRD------TTARLWSLEQ   80 (351)
Q Consensus        25 ~~~l~~~~~~----~~i~i~~~~~~----~~--------~~~~~i~~~~~~~-~~~~-~~~~~d------~~i~vw~~~~   80 (351)
                      +.+++.|+.+    ..+.+||..+.    ..        .....-.+++..+ ++++ +.|+.+      ..+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            6777777753    45777877665    11        0111112233333 5666 777653      3578889887


Q ss_pred             CeeeE--EeeCCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeEEec-----cCCCCeEEEEEccC-CCEEEE
Q psy519           81 MYPLR--IFVGHKQDVTCARFHPKITYIGTGSYDK--AVRLWSITDGASVRVFS-----DHVSPVLSIAFSPC-GKYLAS  150 (351)
Q Consensus        81 ~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~-~~~l~~  150 (351)
                      .+-..  .+....... +++...++..++.|+.++  .+.+||+.+.+....-.     .......++.+..+ +.+++.
T Consensus       478 ~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            54322  221112222 223324778888887654  79999998876433221     11122233555555 667777


Q ss_pred             EecCC----CCCeEEEEEccCCce-----eEEecc----CCCCEEEEEECCCCcEEEEEcC--------CCeEEEEEcCC
Q psy519          151 GGTGS----YDKAVRLWSITDGAS-----VRVFSD----HVSPVLSIAFSPCGKYLASGGE--------DGLVLTHELTT  209 (351)
Q Consensus       151 ~~~~~----~d~~i~i~d~~~~~~-----~~~~~~----~~~~i~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~  209 (351)
                      |+...    ....+..||+.+.+-     ...+..    ..... .++...++++++.|+.        ...+.+||+.+
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            76421    125699999987761     122211    11112 2233334777777764        34588999887


Q ss_pred             CcEE
Q psy519          210 GRVI  213 (351)
Q Consensus       210 ~~~~  213 (351)
                      .+-.
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            6544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.33  E-value=0.34  Score=39.59  Aligned_cols=218  Identities=13%  Similarity=-0.008  Sum_probs=116.5

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      .|..++....    ..++-. +|.++.|-....     .......|..++......++. . ||.++.|-....-++..-
T Consensus        25 ~i~~ia~G~~----h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYF----HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSS----EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCC----eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            5666666533    323334 899999976654     111234677777655444444 4 899999986543222111


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      ..-...|..++...+.  .+.-. +|.|+.|-......+.........|..++.......++   .   |+.++.|-...
T Consensus        98 ~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l---~---~G~v~~wG~n~  168 (282)
T 3qhy_B           98 AEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV---K---NGGVIAWGDNY  168 (282)
T ss_dssp             GGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E---TTEEEEEECCT
T ss_pred             cccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE---E---CCEEEEecCCC
Confidence            1113467777776543  33334 89999997654322222222335677776643322222   3   78888887544


Q ss_pred             CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy519          168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       168 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                      ...+..-......|..++-..+ ..++.  .+|.++.|-......+- +.......|..++-..+. .++. . ||.++.
T Consensus       169 ~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~  241 (282)
T 3qhy_B          169 FGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY-SLAL-K-NGKVIA  241 (282)
T ss_dssp             TSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC-EEEE-E-TTEEEE
T ss_pred             CCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCE-EEEE-E-CCEEEE
Confidence            2211111112345777765433 33333  58999999764322111 111222456777654433 3333 3 899999


Q ss_pred             EeCCCC
Q psy519          248 YGWPSA  253 (351)
Q Consensus       248 ~~~~~~  253 (351)
                      |-....
T Consensus       242 wG~n~~  247 (282)
T 3qhy_B          242 WGSSRT  247 (282)
T ss_dssp             ESTTCC
T ss_pred             ecCCCC
Confidence            976654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.32  E-value=0.27  Score=45.92  Aligned_cols=192  Identities=12%  Similarity=0.053  Sum_probs=103.3

Q ss_pred             CCcE-EEEeCC----CcEEEEeCCCCeeeEEe-e-------CCCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEeC
Q psy519           61 KGLA-LTGSRD----TTARLWSLEQMYPLRIF-V-------GHKQDVTCARFHP-KITYIGTGSYD------KAVRLWSI  120 (351)
Q Consensus        61 ~~~~-~~~~~d----~~i~vw~~~~~~~~~~~-~-------~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~  120 (351)
                      ++.+ +.|+.+    ..+.+||+.+++-...- .       ...... +++..+ ++..++.|+.+      ..+.+||+
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4555 777653    46888998876533222 1       111222 333333 67778887754      35889998


Q ss_pred             CCCceeEEecc-CCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc------CCCCEEEEEECCC-CcE
Q psy519          121 TDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD------HVSPVLSIAFSPC-GKY  192 (351)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~  192 (351)
                      .+.+....-.. ....-.+++.-.++.+++.|+..... .+.+||..+.+ -..+..      .......+.+..+ +++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            87654332111 11111223332478888888762222 79999987753 222211      1122233555554 667


Q ss_pred             EEEEcC--C-----CeEEEEEcCCCcE-----EEEeec---cCCCCEEEEEEcCCCCEEEEEeC--------CCeEEEEe
Q psy519          193 LASGGE--D-----GLVLTHELTTGRV-----ISRFHL---QEHEPVTSLVWSVTGETLVTGSL--------TGTVQFYG  249 (351)
Q Consensus       193 l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i~~  249 (351)
                      ++.|+.  +     ..+.+||+.+.+.     -..+..   ...... +++...++++++.|+.        ...+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            777765  2     4588999987761     111211   111122 2333333677777764        34689999


Q ss_pred             CCCCcee
Q psy519          250 WPSASKI  256 (351)
Q Consensus       250 ~~~~~~~  256 (351)
                      ..+.+-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            8877544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.13  E-value=1.2  Score=44.14  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=117.7

Q ss_pred             ceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee--EEeeCCCCCeEEEEEeCC------CCEEEEEeC-CCcEEEEeCCC
Q psy519           52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYPL--RIFVGHKQDVTCARFHPK------ITYIGTGSY-DKAVRLWSITD  122 (351)
Q Consensus        52 ~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~i~~i~~~~~------~~~l~~~~~-dg~i~i~d~~~  122 (351)
                      .|...+.+. ..++.+. ++.+.++++..++..  ... .-...|.|+++.|.      ++++++|.. |++++++++.+
T Consensus       515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            455555443 3344443 678888887655322  121 23567999999763      468999996 99999999987


Q ss_pred             CceeEEecc-CCCCeEEEEEcc--CCCEEEEEecCCCCCeEEEEEcc--CCceeEE--eccCCCCEEEEEECCCCcEEEE
Q psy519          123 GASVRVFSD-HVSPVLSIAFSP--CGKYLASGGTGSYDKAVRLWSIT--DGASVRV--FSDHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~  195 (351)
                      .+.+....- ......++.+..  ...+|..|-.   ||.+.-+.+.  ++.....  ..-...++.-..+...+..-+.
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~---dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~  668 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALG---DGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVF  668 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET---TSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEE
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC---CCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEE
Confidence            665543321 122344444432  3456777777   8987666554  4433221  1122345544444444433233


Q ss_pred             EcCCCeEEEEEcCCCcEEEEeeccCCCCE-EEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeee------eecceeEE
Q psy519          196 GGEDGLVLTHELTTGRVISRFHLQEHEPV-TSLVWSVT--GETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAA  266 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~  266 (351)
                      +..+.-..+|.-+ ++.... .... ..+ ....|+..  ..-++..+ ++.++|..++..+....      ....++++
T Consensus       669 a~s~rp~liy~~~-~~l~~s-~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y  744 (1158)
T 3ei3_A          669 ACSDRPTVIYSSN-HKLVFS-NVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY  744 (1158)
T ss_dssp             EESSSCEEEEESS-SSEEEE-EBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred             EECCCCEEEEEcC-CceEEe-ccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence            3334444455433 332221 1121 223 33345432  23454443 45699998876554433      34457889


Q ss_pred             ecCCceeeeeecc
Q psy519          267 QPVGFEAATLAAN  279 (351)
Q Consensus       267 s~~~~~~~~~~~~  279 (351)
                      +|..+.++++...
T Consensus       745 ~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          745 QEVSQCFGVLSSR  757 (1158)
T ss_dssp             EGGGTEEEEEEEE
T ss_pred             cCCCCEEEEEEEe
Confidence            9988876666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.066  Score=44.96  Aligned_cols=146  Identities=12%  Similarity=0.100  Sum_probs=86.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeEEeccC-CCCeEEEEEc--c-CCCEEEEE-ecCCCCCeEEEEEccCCceeEEecc--
Q psy519          104 TYIGTGSYDKAVRLWSITDGASVRVFSDH-VSPVLSIAFS--P-CGKYLASG-GTGSYDKAVRLWSITDGASVRVFSD--  176 (351)
Q Consensus       104 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~~~-~~~~~d~~i~i~d~~~~~~~~~~~~--  176 (351)
                      ..++.++.||.|+-+|..+|+....++.. ..++....-.  + ++..++.. ..   ||.|..+|..+|.....+..  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~---dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG---DGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST---TTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC---CCEEEEEECCCCcEEeeecccc
Confidence            47888999999999999999999888653 1222221100  1 22333332 35   99999999888754433321  


Q ss_pred             --CCCCEEE---EEE-C----CCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE----E--EEEEc-----CCCCE
Q psy519          177 --HVSPVLS---IAF-S----PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV----T--SLVWS-----VTGET  235 (351)
Q Consensus       177 --~~~~i~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v----~--~~~~~-----~~~~~  235 (351)
                        ...++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+........    .  +....     ..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence              2223321   001 0    1456788999999999999999999988864322110    0  11110     12456


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q psy519          236 LVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~  253 (351)
                      ++.+..+..+.+.+ +++
T Consensus       168 v~ig~~~y~v~~~~-~sG  184 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDG  184 (339)
T ss_dssp             EEEEEEEEECEECC-TTS
T ss_pred             EEEecceEEEEEEC-CCC
Confidence            77777777777766 444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.10  E-value=1.3  Score=44.04  Aligned_cols=235  Identities=13%  Similarity=0.075  Sum_probs=131.2

Q ss_pred             ccceEEeeecCCc----cccEEEEecC-CCceEEEecCCc-------cCC--CccceEEEEECCCCcE-EEEeCCCcEEE
Q psy519           11 HKHFIQNSFKPET----VEDVLANLES-QKNLQSRYLPYY-------TSG--HDMTVWSVEACSKGLA-LTGSRDTTARL   75 (351)
Q Consensus        11 ~~~v~~~~~sp~~----~~~~l~~~~~-~~~i~i~~~~~~-------~~~--~~~~i~~~~~~~~~~~-~~~~~d~~i~v   75 (351)
                      ...|.|+++.|..    ..+++|.|.. |+++++++++..       +..  -...+.-+.+ ....+ ..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence            3578999998741    1368999986 999999999865       111  1122222333 12233 78888998766


Q ss_pred             EeC--CCCeeeE--EeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCe-EEEEEccC--CCEE
Q psy519           76 WSL--EQMYPLR--IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPV-LSIAFSPC--GKYL  148 (351)
Q Consensus        76 w~~--~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~--~~~l  148 (351)
                      +.+  .+++...  ...-...++.-..+...+..-+.+..+....+|.-+ ++....-- ....+ ....|+..  .+-+
T Consensus       632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l-~~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNV-NLKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEB-SSSCCCEEEEECCSSSTTEE
T ss_pred             EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEecc-ChHHhceEeccCcccCCCcE
Confidence            554  3444321  112224456555555444333333334555555433 33221111 11223 23345432  1234


Q ss_pred             EEEecCCCCCeEEEEEccCCce--eEEeccCCCCEEEEEECCCCcEEEEEcC----------------------------
Q psy519          149 ASGGTGSYDKAVRLWSITDGAS--VRVFSDHVSPVLSIAFSPCGKYLASGGE----------------------------  198 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------  198 (351)
                      +...    ++.++|..+..-+.  ++.+ .-...++.++++|+.+.++.+..                            
T Consensus       710 v~~~----~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (1158)
T 3ei3_A          710 ALAN----NSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS  784 (1158)
T ss_dssp             EEEC----SSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred             EEEc----CCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence            4333    56688888754332  2223 23456788888887665544321                            


Q ss_pred             ---------------------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc---CC-CCEEEEEe----------CCC
Q psy519          199 ---------------------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWS---VT-GETLVTGS----------LTG  243 (351)
Q Consensus       199 ---------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~l~~~~----------~dg  243 (351)
                                           -+.+++.|..+.+.+..+.+.....+.+++.-   .+ ..++++|+          ..|
T Consensus       785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G  864 (1158)
T 3ei3_A          785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG  864 (1158)
T ss_dssp             CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred             ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence                                 12477888888888888877776666666542   22 46888886          348


Q ss_pred             eEEEEeCCCC
Q psy519          244 TVQFYGWPSA  253 (351)
Q Consensus       244 ~i~i~~~~~~  253 (351)
                      .|.+|++..+
T Consensus       865 ri~vf~v~~~  874 (1158)
T 3ei3_A          865 RIVVFQYSDG  874 (1158)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            8999999754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.08  E-value=0.68  Score=40.73  Aligned_cols=105  Identities=10%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee--EEecc------CCCCEEEEEECCC---CcEEEEEcC---
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV--RVFSD------HVSPVLSIAFSPC---GKYLASGGE---  198 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~---  198 (351)
                      -.....|+|.|+|+++++-..   .+.|++++..+++..  ..+..      .......|+|+|+   +..|+++..   
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~---gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERA---TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcEEEEEcC---CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            345679999999997776432   347888886555432  22221      2456779999995   444444432   


Q ss_pred             ----------CCeEEEEEcCCC-------cEEE-EeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          199 ----------DGLVLTHELTTG-------RVIS-RFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       199 ----------dg~i~i~d~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                                ...|.-+++..+       +.+. .+..........|+|.|||.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      235655655332       1111 12212224578999999998777644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.07  E-value=1  Score=42.59  Aligned_cols=221  Identities=10%  Similarity=-0.004  Sum_probs=129.6

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-cC----CCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-TS----GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-~~----~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~   86 (351)
                      ..|.++.-..+  |. |..|+.+| +..||.... +.    .....|.++.. .+|.+..++.+ -+..++..+++....
T Consensus        63 ~~i~~i~~d~~--g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           63 TRIYCGVIIDN--TY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SCEEEEEEETT--TE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred             ceEEEEEEcCC--Cc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEe
Confidence            46788777666  54 55555555 778887665 11    12235777654 46777555555 688899877654322


Q ss_pred             ee----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-----CCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           87 FV----GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-----HVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        87 ~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ..    .....|.++....++.+.+ ++.+ -+..++..+++.......     ....|.++...+++..|..+..    
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~----  210 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE----  210 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE----
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC----
Confidence            01    1234688888877776554 4544 477888776653322111     1234888888877776666653    


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc------CCCCEEEEEEcC
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ------EHEPVTSLVWSV  231 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~  231 (351)
                      +-+..+|..+++...........|.++...++|.+.+. +.+ -+.+++..+++........      ....|.++....
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            46888997766432211112235788888777775554 444 5788887765433221100      124588998888


Q ss_pred             CCCEEEEEeCCCeEEEE
Q psy519          232 TGETLVTGSLTGTVQFY  248 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~  248 (351)
                      +|.+.+ |+..| +.++
T Consensus       289 ~g~lWi-GT~~G-l~~~  303 (758)
T 3ott_A          289 EHNIWL-GTDYG-ISLS  303 (758)
T ss_dssp             TCCEEE-EESSS-EEEE
T ss_pred             CCCEEE-EeCCc-cccc
Confidence            877544 44456 4444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.19  E-value=1.5  Score=38.59  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=112.1

Q ss_pred             ceEEeeecCCcccc-EEEEecCCCceEEEecCCc------------cC-----CCccceEEEEECCC----CcE-EEEeC
Q psy519           13 HFIQNSFKPETVED-VLANLESQKNLQSRYLPYY------------TS-----GHDMTVWSVEACSK----GLA-LTGSR   69 (351)
Q Consensus        13 ~v~~~~~sp~~~~~-~l~~~~~~~~i~i~~~~~~------------~~-----~~~~~i~~~~~~~~----~~~-~~~~~   69 (351)
                      ....|+|.|+  |+ +|+++...|.|++++....            ..     ........|+|+|+    +.+ ++-+.
T Consensus        15 ~P~~~a~~pd--G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           15 QPVGALHSGD--GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SEEEEECCSS--SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CceEEEECCC--CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4478999999  86 4555567899999975422            00     11356788999996    544 44332


Q ss_pred             --C----------CcEEEEeCCC----------CeeeEEee--CCCCCeEEEEEeCCCCEEEEEeCCC------------
Q psy519           70 --D----------TTARLWSLEQ----------MYPLRIFV--GHKQDVTCARFHPKITYIGTGSYDK------------  113 (351)
Q Consensus        70 --d----------~~i~vw~~~~----------~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg------------  113 (351)
                        +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.+..+            
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~  172 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL  172 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence              1          1344455532          12222222  1122357899999998777766433            


Q ss_pred             -----cEEEEeCCCC------c-------------eeEEe-ccCCCCeEEEEEccC-----CC-EEEEEecCCCC-CeEE
Q psy519          114 -----AVRLWSITDG------A-------------SVRVF-SDHVSPVLSIAFSPC-----GK-YLASGGTGSYD-KAVR  161 (351)
Q Consensus       114 -----~i~i~d~~~~------~-------------~~~~~-~~~~~~i~~~~~~~~-----~~-~l~~~~~~~~d-~~i~  161 (351)
                           .|.-.|....      .             ....+ .+|. ....++|+|.     |+ ++..+.....+ ..-.
T Consensus       173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                 2333343321      0             00111 1232 2356899996     34 34443210001 1123


Q ss_pred             EEEccCC------ceeEEeccCC-CCEEEEEECC-------CCcEEEEEcCCCeEEEEEcCCCc---EEEEee-c-----
Q psy519          162 LWSITDG------ASVRVFSDHV-SPVLSIAFSP-------CGKYLASGGEDGLVLTHELTTGR---VISRFH-L-----  218 (351)
Q Consensus       162 i~d~~~~------~~~~~~~~~~-~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~-~-----  218 (351)
                      |..+..+      .++..+..+. ..+..+.|-.       .+.+|+.. ..+.|....+....   ....+. .     
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~-~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~  330 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGD-RNGNFLTLQQSPVTKQWQEKPLCLGTSGSC  330 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEE-TTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEec-CCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence            3333322      2344443321 4677777753       23445443 34666655554331   111110 0     


Q ss_pred             --cCCCCEEEEEEcCCCCEEEEEe
Q psy519          219 --QEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       219 --~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                        .....+..+...|||.++++..
T Consensus       331 ~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          331 RGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             cccccCcceEEEECCCCCEEEEec
Confidence              1125689999999998877765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.11  E-value=0.33  Score=43.33  Aligned_cols=103  Identities=17%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC------ce-------eEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG------AS-------VRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       134 ~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~------~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      .....+..+|||+++++++..  +.++.++|++.-      +.       ..+.+ -.......+|.++|.-..+.--|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecc
Confidence            344578899999999998764  889999998742      11       22232 234567889999996555666899


Q ss_pred             eEEEEEcCCC----------cEEEEeeccCCCCEEEEEE------cCCCCEEEEEeC
Q psy519          201 LVLTHELTTG----------RVISRFHLQEHEPVTSLVW------SVTGETLVTGSL  241 (351)
Q Consensus       201 ~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~  241 (351)
                      .|.-|++...          ..+.++..  +-++-.+.-      .|+|++|++...
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv--~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDV--HYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEEC--SSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             eEEEEeccHHHHHhcCccCCeeeecccc--ccCCcccccCCCccCCCCccEEEEecc
Confidence            9999998653          34444432  334444444      568999998753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.68  E-value=2.4  Score=34.50  Aligned_cols=178  Identities=15%  Similarity=-0.022  Sum_probs=94.2

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF   87 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~   87 (351)
                      .|..++....  -. ++. . +|.++.|-....     ...-...|..++...+..++ -. +|.|+.|-.....++..-
T Consensus        64 ~i~~ia~G~~--hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           64 GVDAIAAGNY--HS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             CCCEEEECSS--EE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTSCC
T ss_pred             CEEEEEeCCC--EE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCCCC
Confidence            4556665543  22 222 4 888988876654     11112467777765544443 34 899999976543222111


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccC
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~  167 (351)
                      ......|..++...+. .++ -. ||.++.|-......+.........|..++....  ..+.- .   |+.++.|=...
T Consensus       137 ~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~  207 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNR  207 (282)
T ss_dssp             GGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCT
T ss_pred             ccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCC
Confidence            1223457777665432 222 23 799999976543222211122356777776533  33333 5   89999997544


Q ss_pred             CceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       168 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      ...+..-......|..++-... ..++..  ||.++.|-...
T Consensus       208 ~gqlg~p~~~~~~v~~i~~G~~-h~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          208 YKQTTVPTEALSGVSAIASGEW-YSLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             TSTTCCCGGGGSSCCEEEECSS-CEEEEE--TTEEEEESTTC
T ss_pred             CCCCCCCcccCCCceEEEcCCC-EEEEEE--CCEEEEecCCC
Confidence            2212111111234666665433 333333  89999997544

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=88.91  E-value=8.8  Score=31.65  Aligned_cols=186  Identities=12%  Similarity=0.025  Sum_probs=104.5

Q ss_pred             CCcE-EEEeCCCcEEEEeCCCCeee---------EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---C----
Q psy519           61 KGLA-LTGSRDTTARLWSLEQMYPL---------RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD---G----  123 (351)
Q Consensus        61 ~~~~-~~~~~d~~i~vw~~~~~~~~---------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~----  123 (351)
                      +..+ ++.+.+|.|+--.+...+..         ..+.. .+.+..+........++..+..|.++-+....   .    
T Consensus         7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4444 77777888877655432211         11122 23344443433445666667788877665431   1    


Q ss_pred             --ce---eEEeccCCCCeEEEEEcc---CCCEEEEEecCCCCCeEEEEEccCC-------ceeEEeccCCCCEEEEEECC
Q psy519          124 --AS---VRVFSDHVSPVLSIAFSP---CGKYLASGGTGSYDKAVRLWSITDG-------ASVRVFSDHVSPVLSIAFSP  188 (351)
Q Consensus       124 --~~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~  188 (351)
                        .+   ...+. ....|.++..-+   +..+++..+.   +|.++...+..-       .....+.. ...+..+....
T Consensus        86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~---~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~  160 (312)
T 1suu_A           86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTA---SGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF  160 (312)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET---TSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred             CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeC---CCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence              11   11122 234455553332   4566777777   999998887432       11222333 44566665555


Q ss_pred             CCcEEEEEcCCCeEEEEEcCC-------CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          189 CGKYLASGGEDGLVLTHELTT-------GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       189 ~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                      +...++..+.+|.+..+....       .+-...+.+.....+.++..-.++..+++.+..|..+...+..
T Consensus       161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            556777888899988887643       1223333344455677776655666788888899988887754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.20  E-value=20  Score=34.86  Aligned_cols=37  Identities=11%  Similarity=0.166  Sum_probs=32.2

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           93 DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        93 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      .+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677788888889999999999999999999987764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.48  E-value=16  Score=31.06  Aligned_cols=186  Identities=8%  Similarity=0.028  Sum_probs=110.1

Q ss_pred             ccceEEEEECCCCcE-EEE-e--------------CCCcEEEEeCCCC--eeeEEeeCC------CCCeEEEEEe---CC
Q psy519           50 DMTVWSVEACSKGLA-LTG-S--------------RDTTARLWSLEQM--YPLRIFVGH------KQDVTCARFH---PK  102 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~-~--------------~d~~i~vw~~~~~--~~~~~~~~~------~~~i~~i~~~---~~  102 (351)
                      --.|..+...+.+++ +.= +              .--.|.+||+.+.  +.++.+.-.      ...+..+++.   |+
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            345777777777776 421 1              1125889999999  888777532      3457788887   22


Q ss_pred             ----CCEEEEE-eCCCcEEEEeCCCCceeEEec----cC--------------CCCeEEEEEccC----CCEEEEEecCC
Q psy519          103 ----ITYIGTG-SYDKAVRLWSITDGASVRVFS----DH--------------VSPVLSIAFSPC----GKYLASGGTGS  155 (351)
Q Consensus       103 ----~~~l~~~-~~dg~i~i~d~~~~~~~~~~~----~~--------------~~~i~~~~~~~~----~~~l~~~~~~~  155 (351)
                          +.+++.+ +..+.|.++|+.+++.-+.+.    ..              ...+..++++|+    ++.|.....  
T Consensus       166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl--  243 (381)
T 3q6k_A          166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG--  243 (381)
T ss_dssp             TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES--
T ss_pred             CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC--
Confidence                3344433 346789999999887655441    00              247888999997    777776654  


Q ss_pred             CCCeEEEEEc-----cCC---ceeEEeccC--CCCEEEEEEC-CCCcEEEEEcCCCeEEEEEcCC-C---cEEEEee-cc
Q psy519          156 YDKAVRLWSI-----TDG---ASVRVFSDH--VSPVLSIAFS-PCGKYLASGGEDGLVLTHELTT-G---RVISRFH-LQ  219 (351)
Q Consensus       156 ~d~~i~i~d~-----~~~---~~~~~~~~~--~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~-~~  219 (351)
                       .+ -++|.+     ++.   ..++.+-..  ...-..+++. .+|.++++--+...|..|+... .   +....+. -.
T Consensus       244 -ss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~  321 (381)
T 3q6k_A          244 -SA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS  321 (381)
T ss_dssp             -SC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT
T ss_pred             -CC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC
Confidence             22 233333     222   122222111  2334456775 5788888888889999999865 1   1122221 11


Q ss_pred             CCCCEEEEEEcCCCCEEEEE
Q psy519          220 EHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       220 ~~~~v~~~~~~~~~~~l~~~  239 (351)
                      .-.-+..+.+.++|.+.+..
T Consensus       322 ~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          322 RFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             TCCSEEEEEECTTSCEEEEE
T ss_pred             CccccCeEEECCCCeEEEEE
Confidence            11346777777666654444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.08  E-value=19  Score=30.62  Aligned_cols=206  Identities=13%  Similarity=-0.059  Sum_probs=100.1

Q ss_pred             cEEEEecCCCceEEEecCC--c-c-----CCCccceEEEEECC--CCcEEEEeCCC----cEEEEeCC--CCeeeEE---
Q psy519           26 DVLANLESQKNLQSRYLPY--Y-T-----SGHDMTVWSVEACS--KGLALTGSRDT----TARLWSLE--QMYPLRI---   86 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~--~-~-----~~~~~~i~~~~~~~--~~~~~~~~~d~----~i~vw~~~--~~~~~~~---   86 (351)
                      ..|.++...| +.+++...  . .     ......|.+|++.|  .+.+..+...+    .|...+-.  +.+.+..   
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA  101 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence            3566666666 54454332  1 1     12235699999998  66675454444    34433211  1222211   


Q ss_pred             eeC--------CCCCeEEEEEeC-C-CCEEEEEeCCCcEEEEeCCCCceeEEecc-------------------CCCCeE
Q psy519           87 FVG--------HKQDVTCARFHP-K-ITYIGTGSYDKAVRLWSITDGASVRVFSD-------------------HVSPVL  137 (351)
Q Consensus        87 ~~~--------~~~~i~~i~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~i~  137 (351)
                      +..        ....|.++++.| + ...++.+...+.|...+ ..++.-..+..                   ....+.
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~  180 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH  180 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence            110        112477888887 2 45566665556555543 22332222211                   123578


Q ss_pred             EEEEccC-CCEEEEEecCCCCCeEEEEEccCCceeEEeccC-------------CCCEEEEEECCC-CcEEEEEcCCCeE
Q psy519          138 SIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSDH-------------VSPVLSIAFSPC-GKYLASGGEDGLV  202 (351)
Q Consensus       138 ~~~~~~~-~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~-~~~l~~~~~dg~i  202 (351)
                      ++.++|. ...++.+..   ++.|...+ ..++.-..+...             ...+..+.++|+ ...++++...+ |
T Consensus       181 ~i~~d~~~~~~l~vg~~---~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l  255 (394)
T 3b7f_A          181 SILVDPRDPKHLYIGMS---SGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I  255 (394)
T ss_dssp             EEEECTTCTTCEEEEEE---TBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred             EEEECCCCCCEEEEEEC---CCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence            8999883 445555544   45444432 233333332110             124889999985 45666666544 4


Q ss_pred             EEEEcCCCcEEEEeeccC-C---CCEEEEEEcCC-CCEEEEE
Q psy519          203 LTHELTTGRVISRFHLQE-H---EPVTSLVWSVT-GETLVTG  239 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~-~~~l~~~  239 (351)
                      ...+ ..++.-..+.... .   ..+..+.++|. ...|.++
T Consensus       256 ~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          256 YRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             EEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             EEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            4433 2333333332111 1   23567888763 3344444

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.02  E-value=5.8  Score=36.03  Aligned_cols=59  Identities=20%  Similarity=0.215  Sum_probs=43.4

Q ss_pred             EEEEEECCCCcEEEEEcCC------------CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          181 VLSIAFSPCGKYLASGGED------------GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      .-.|+|+|.|.+++.-..+            ..+.+.+..+++....+..+....++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            4679999999966654322            3466677777776665555556789999999999988765

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.66  E-value=18  Score=30.07  Aligned_cols=154  Identities=12%  Similarity=0.010  Sum_probs=88.6

Q ss_pred             ccceEEEEECC---CCc-EEEEeCCCcEEEEeCCCCee-------eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy519           50 DMTVWSVEACS---KGL-ALTGSRDTTARLWSLEQMYP-------LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW  118 (351)
Q Consensus        50 ~~~i~~~~~~~---~~~-~~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  118 (351)
                      ...|..+...+   +.. +++.+.+|.++--.+...+.       ...+.. ...+..+........++..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            34455543332   344 49999999999988754221       122333 3455555555555677778889998888


Q ss_pred             eCC--CCc---------eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCC-------ceeEEec--cCC
Q psy519          119 SIT--DGA---------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG-------ASVRVFS--DHV  178 (351)
Q Consensus       119 d~~--~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~-------~~~~~~~--~~~  178 (351)
                      ...  .-.         ....+. ....|.++...+.+..++..+.   .|.++.-.+..-       +-+..++  ...
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~---~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~  248 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATS---GGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR  248 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEET---TSEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred             ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeC---CCcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence            776  211         111122 3456777766666678888888   899988876432       1122222  213


Q ss_pred             CCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          179 SPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       179 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      ..+..+....+...++..+.+|.+.-++..
T Consensus       249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          249 GRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            345444444344455556667777667654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.68  E-value=24  Score=30.92  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             ceEEEEECCCCc--EEEEeCCCcEEEEeCCCCe---eeEEee---------CCCCCeEEEEEeCC----CCEEEEEeC--
Q psy519           52 TVWSVEACSKGL--ALTGSRDTTARLWSLEQMY---PLRIFV---------GHKQDVTCARFHPK----ITYIGTGSY--  111 (351)
Q Consensus        52 ~i~~~~~~~~~~--~~~~~~d~~i~vw~~~~~~---~~~~~~---------~~~~~i~~i~~~~~----~~~l~~~~~--  111 (351)
                      ..+.|+|.|+|.  ++++...|.|++++.....   .+..+.         ........|+++|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            467899999995  7778889999999754321   112111         11456789999996    333333221  


Q ss_pred             C----------CcEEEEeCCCC----------ceeEEec--cCCCCeEEEEEccCCCEEEEEec
Q psy519          112 D----------KAVRLWSITDG----------ASVRVFS--DHVSPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus       112 d----------g~i~i~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  153 (351)
                      +          ..|.-|.+..+          +.+..+.  .....-..|+|.|||.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          13444555421          1222221  12234678999999988877664

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.67  E-value=12  Score=33.87  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=42.8

Q ss_pred             CEEEEEECCCCcEEEEEcC------------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEe
Q psy519          180 PVLSIAFSPCGKYLASGGE------------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS  240 (351)
Q Consensus       180 ~i~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  240 (351)
                      ....|.|.++|.+.+....            .+.+..++..+++....+.......++.++|+||++.|+++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            4678999999987774321            226777777777765544333346789999999999887754

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=81.24  E-value=36  Score=31.84  Aligned_cols=234  Identities=10%  Similarity=-0.032  Sum_probs=124.1

Q ss_pred             eEEee-ecCCccccEEEEec-----CCCceEEEecCCc--cCCC-ccce----------EEEEECCCCcEEEEe------
Q psy519           14 FIQNS-FKPETVEDVLANLE-----SQKNLQSRYLPYY--TSGH-DMTV----------WSVEACSKGLALTGS------   68 (351)
Q Consensus        14 v~~~~-~sp~~~~~~l~~~~-----~~~~i~i~~~~~~--~~~~-~~~i----------~~~~~~~~~~~~~~~------   68 (351)
                      ...+. ++|+  +++++.+-     ....++++|+.+.  .... ...+          ..++|..++.++.+.      
T Consensus       131 ~~g~~~~~~~--~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~  208 (711)
T 4hvt_A          131 YRGVSNCFQN--PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE  208 (711)
T ss_dssp             EEEEEECSSS--TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred             EeceeecCCC--CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence            34455 8999  98877642     2347999999887  1111 1011          334776444443321      


Q ss_pred             -----CCCcEEEEeCCCCe--eeEEeeCCCCCe-EEEEEeCCCC-----EEEEEeCC---CcEEEEeCCC--CceeEEec
Q psy519           69 -----RDTTARLWSLEQMY--PLRIFVGHKQDV-TCARFHPKIT-----YIGTGSYD---KAVRLWSITD--GASVRVFS  130 (351)
Q Consensus        69 -----~d~~i~vw~~~~~~--~~~~~~~~~~~i-~~i~~~~~~~-----~l~~~~~d---g~i~i~d~~~--~~~~~~~~  130 (351)
                           ....|+.|.+.+..  -...+.+....+ .....+++++     .+++.+.+   ..+++.|...  ++.. .+.
T Consensus       209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~  287 (711)
T 4hvt_A          209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KIN  287 (711)
T ss_dssp             BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECC
T ss_pred             cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eee
Confidence                 23568888886542  233444443333 2344456655     24443322   4566667653  3322 232


Q ss_pred             cCCCCeEEEEEccCCCEEEEEec-------CCCCCeEEEEEccCCc-------eeEE-ec-cCCCCEEEEEECCCCcEEE
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGT-------GSYDKAVRLWSITDGA-------SVRV-FS-DHVSPVLSIAFSPCGKYLA  194 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~-------~~~d~~i~i~d~~~~~-------~~~~-~~-~~~~~i~~~~~~~~~~~l~  194 (351)
                      .....  .+..+.++.+++....       ....+.|...|+.++.       .... +. .....+..+.|..+ .+++
T Consensus       288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~  364 (711)
T 4hvt_A          288 MPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL  364 (711)
T ss_dssp             SCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred             cCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence            12221  1334445555553311       0026789999987642       2232 32 23345778888865 5666


Q ss_pred             EEcCCCe--EEEEEcCCCc-EEEE-eeccCCCCEEEEEEcCCCC-EEEEEeC---CCeEEEEeCCCCc
Q psy519          195 SGGEDGL--VLTHELTTGR-VISR-FHLQEHEPVTSLVWSVTGE-TLVTGSL---TGTVQFYGWPSAS  254 (351)
Q Consensus       195 ~~~~dg~--i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~~---dg~i~i~~~~~~~  254 (351)
                      +...++.  +.++|+.++. .... +.+.....+.....++++. ++++.+.   -+.+..+|+. ++
T Consensus       365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~  431 (711)
T 4hvt_A          365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE  431 (711)
T ss_dssp             EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred             EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence            6666664  6777776664 2333 4333345677677777765 4444333   3678888887 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	8e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 2e-29
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 18/223 (8%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
                            +    ++ SRD T ++W ++  Y ++ F GH++ V   R +  
Sbjct: 95  RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154

Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG---------- 152
            T I + S D+ VR+W +          +H   V  I+++P   Y +             
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

Query: 153 -------TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTH 205
                  +GS DK +++W ++ G  +     H + V  + F   GK++ S  +D  +   
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
           +    R +   +  EH  VTSL +  T   +VTGS+  TV+ +
Sbjct: 275 DYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 6e-27
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 24/188 (12%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
            +Q+ Y     +GH   V  V     G L  + S D T R+W +           H+  V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 95  TCARFHPKIT--------------------YIGTGSYDKAVRLWSITDGASVRVFSDHVS 134
            C  + P+ +                    ++ +GS DK +++W ++ G  +     H +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
            V  + F   GK++ S    + DK +R+W   +   ++  + H   V S+ F     Y+ 
Sbjct: 249 WVRGVLFHSGGKFILSC---ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 195 SGGEDGLV 202
           +G  D  V
Sbjct: 306 TGSVDQTV 313

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 3e-17
 Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 5/214 (2%)

Query: 47  SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
           SGH   V  V       + ++ S D T ++W  E     R   GH   V    F      
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           + + S D  ++LW       +R    H   V S++  P G ++ S    S DK +++W +
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS---ASRDKTIKMWEV 130

Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
             G  V+ F+ H   V  +  +  G  +AS   D  V    + T    +      H  V 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH-VVE 189

Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG 259
            + W+           TG+           +  G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (279), Expect = 7e-29
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 5/151 (3%)

Query: 54  WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK 113
               A    L ++G+ D +A+LW + +    + F GH+ D+    F P      TGS D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 114 AVRL--WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV 171
             RL               + +  + S++FS  G+ L +G     D    +W        
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG---YDDFNCNVWDALKADRA 305

Query: 172 RVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
            V + H + V  +  +  G  +A+G  D  +
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (259), Expect = 4e-26
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 8/205 (3%)

Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           +GH   +           +T S DTT  LW +E       F GH  DV      P     
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL--WS 164
            +G+ D + +LW + +G   + F+ H S + +I F P G   A   TGS D   RL    
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLR 256

Query: 165 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-P 223
                      + +  + S++FS  G+ L +G +D      +           L  H+  
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNR 314

Query: 224 VTSLVWSVTGETLVTGSLTGTVQFY 248
           V+ L  +  G  + TGS    ++ +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.9 bits (216), Expect = 4e-20
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQD- 93
           +++        +GH+  + ++     G    TGS D T RL+ L     L  +       
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 94  -VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 152
            +T   F      +  G  D    +W         V + H + V  +  +  G  +A+  
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT-- 329

Query: 153 TGSYDKAVRLWS 164
            GS+D  +++W+
Sbjct: 330 -GSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (212), Expect = 1e-19
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 51/283 (18%)

Query: 23  TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQM 81
           T+  +  N++    +Q R       GH   ++++   +   L ++ S+D    +W     
Sbjct: 29  TLSQITNNIDPVGRIQMR-TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT 87

Query: 82  YPLRIFVGHKQDVTCARFHPKITYIGTGS------------------------------- 110
             +         V    + P   Y+  G                                
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147

Query: 111 --------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
                          D    LW I  G     F+ H   V+S++ +P  +   SG   + 
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG---AC 204

Query: 157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV-LTHELTTGRVISR 215
           D + +LW + +G   + F+ H S + +I F P G   A+G +D    L        +++ 
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI 258
            H      +TS+ +S +G  L+ G        +    A + G+
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 45/241 (18%)

Query: 55  SVEACSKGLALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD 112
            +    K  A       T  +  +   QM   R   GH   +    +      + + S D
Sbjct: 17  QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76

Query: 113 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS----------------- 155
             + +W       V       S V++ A++P G Y+A GG  +                 
Sbjct: 77  GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136

Query: 156 -------------------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG 190
                                     D    LW I  G     F+ H   V+S++ +P  
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196

Query: 191 KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW 250
           +   SG  D      ++  G     F   E   + ++ +   G    TGS   T + +  
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 251 P 251
            
Sbjct: 256 R 256

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (220), Expect = 1e-20
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 28/163 (17%)

Query: 65  LTGSRDTTARLWSLEQMY-------PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL 117
             GS D   R+W  E  +             GHK  V    F      + +GS D++V+L
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280

Query: 118 WSITDGASVRVFSDHVS------------PVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
           W++ +  +        S             VLS+A +   +Y+ SG   S D+ V  W  
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG---SKDRGVLFWDK 337

Query: 166 TDGASVRVFSDHVSPVLSIA------FSPCGKYLASGGEDGLV 202
             G  + +   H + V+S+A        P     A+G  D   
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 5e-19
 Identities = 52/234 (22%), Positives = 82/234 (35%), Gaps = 31/234 (13%)

Query: 41  YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
            +                 S    ++GS D T R+W L                T A   
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 101 PKITYIGTGSYDKAVRLWSITDG-------ASVRVFSDHVSPVLSIAFSPCGKYLASGGT 153
               YI  GS D+AVR+W    G       +     + H   V S+ F+  G+ + SG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-- 272

Query: 154 GSYDKAVRLWSITDGASVRVFSDHVS------------PVLSIAFSPCGKYLASGGEDGL 201
            S D++V+LW++ +  +        S             VLS+A +   +Y+ SG +D  
Sbjct: 273 -SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 202 VLTHELTTGRVISRFHLQEHE-PVTSLV------WSVTGETLVTGSLTGTVQFY 248
           VL  +  +G  +    LQ H   V S+                TGS     + +
Sbjct: 332 VLFWDKKSGNPLLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.1 bits (188), Expect = 2e-16
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 22/228 (9%)

Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
             D+ + SV     G    TG+ D   R+W +E    + I  GH+QD+    + P    +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
            +GS D+ VR+W +  G      S              GKY+A+G   S D+AVR+W   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSE 235

Query: 167 DG-------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ 219
            G       +     + H   V S+ F+  G+ + SG  D  V    L      S     
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 220 EH-----------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
                        + V S+  +   E +++GS    V F+   S + +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.0 bits (185), Expect = 6e-16
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 47  SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE------------QMYPLRIFVGHKQD 93
           +GH  +V+SV     G   ++GS D + +LW+L+                   ++GHK  
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 94  VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA------FSPCGKY 147
           V          YI +GS D+ V  W    G  + +   H + V+S+A        P    
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 148 LASGGTGSYDKAVRLWSI 165
            A+   GS D   R+W  
Sbjct: 371 FAT---GSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 68/268 (25%)

Query: 64  ALTGSRDTTARLWSLEQMYPLRI----FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
           AL    +    L++      + +     + H   V C +F     Y+ TG  +K  +++ 
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89

Query: 120 ITDGASVRVFSD------------------HVSPVLSIAFSPCGKYLASGGT-------- 153
           ++DG+ V   SD                      + S+ FSP GK+LA+G          
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

Query: 154 -------------------------------GSYDKAVRLWSITDGASVRVFSDHVSPVL 182
                                          GS D+ VR+W +  G      S       
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209

Query: 183 SIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH------EPVTSLVWSVTGETL 236
                  GKY+A+G  D  V   +  TG ++ R   +        + V S+V++  G+++
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 237 VTGSLTGTVQFYGWPSASKIGIGVYPRC 264
           V+GSL  +V+ +   +A+       P  
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNS 297

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 22/144 (15%)

Query: 129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV----FSDHVSPVLSI 184
            ++H  P+         + +        +    L++      + V      DH S V  +
Sbjct: 9   RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCV 68

Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----------------EPVTSL 227
            FS  G+YLA+G  +     + ++ G +++R                         + S+
Sbjct: 69  KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 228 VWSVTGETLVTGSLTGTVQFYGWP 251
            +S  G+ L TG+    ++ +   
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIE 151

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-17
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
             +     +             ++G+ D   ++W  E    L    GH   V   +F   
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 188

Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
             ++ +GS D ++R+W +  G  +   + H S    +        L SG   + D  V++
Sbjct: 189 --HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSG---NADSTVKI 241

Query: 163 WSITDGASVRVFSDHVSPV-LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE- 220
           W I  G  ++                    ++ +  +DG V   +L TG  I      E 
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 221 ---HEPVTSLVWSVTGETLVTGSLTGTVQFYGW 250
                 V  +  S T      GS  GT +    
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 4e-13
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 12/240 (5%)

Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
            GHD  V +         ++GS D T ++WS      LR  VGH   V  ++    I   
Sbjct: 13  KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
           G+      V      +   +     H S V  +             +GS D  +R+W I 
Sbjct: 73  GSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEKRVV-----SGSRDATLRVWDIE 125

Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS 226
            G  + V   HV+ V        G+ + SG  D +V   +  T   +             
Sbjct: 126 TGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRV 180

Query: 227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLR 286
                 G  +V+GSL  +++ +   + + I      +     +  +   L + +   T++
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 9/190 (4%)

Query: 67  GSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV 126
           GSRD T R+W +E    L + +GH   V C         + +G+YD  V++W       +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCL 170

Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
                H + V S+ F   G ++ SG   S D ++R+W +  G  +   + H S    +  
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSG---SLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225

Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
                 L SG  D  V   ++ TG+ +                      ++T S  GTV+
Sbjct: 226 KD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 247 FYGWPSASKI 256
            +   +   I
Sbjct: 284 LWDLKTGEFI 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 4e-15
 Identities = 38/251 (15%), Positives = 71/251 (28%), Gaps = 50/251 (19%)

Query: 48  GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV------GHKQDVTC----- 96
            HD  ++SV AC+     + S D   ++W  + +              HK  +       
Sbjct: 12  AHDADIFSVSACNSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 97  --ARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL----------SIAFSPC 144
              R   ++  + T S+   +  + IT     +        +L          ++ +   
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 145 GKYLASG--GTGSYDKAVRLWSITDG------------------ASVRVFSDHVSPVLSI 184
              L S             +W                        +V           S+
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-----EHEPVTSLVWSVTGETLVTG 239
             S  G  +A+G  +G V   EL+T R +  F  Q         + S+ +S  G  L   
Sbjct: 191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 240 SLTGTVQFYGW 250
             + +      
Sbjct: 250 HDSNSFGCITL 260

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 10/126 (7%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
                         H   V    F+     + +  +D  +R W +     +   + H   
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 136 V----LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
           +      +A    G  LA  G         +  +  G    + +D    +  +      +
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGV------FDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 387

Query: 192 YLASGG 197
           +    G
Sbjct: 388 WFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 25/220 (11%)

Query: 46  TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
            +    T +  +               +    L+    +   +   Q  T      +   
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG--TVESPMTPSQFATSVDISER-GL 197

Query: 106 IGTGSYDKAVRLWS------ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
           I TG  +  V++        + +  S     ++ + + S+ FSP G  LA     +    
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 160 VRLWSI-------------TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE 206
           + L+                   +      H S V+S++F+  G+ L S G DG +   +
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

Query: 207 LTTGRVISRFHLQEHE---PVTSLVWSVTGETLVTGSLTG 243
           + T   I+  ++   +       L     G++L    +  
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.0 bits (177), Expect = 5e-15
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFS 187
           S  V P+   A++     +A       +  V ++  +      V    +H   V  + ++
Sbjct: 4   SFLVEPISCHAWNKDRTQIA---ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 188 PCGKYLASGGEDGLV 202
           P    + + G D   
Sbjct: 61  PDSNRIVTCGTDRNA 75

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 175 SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTG 233
           S  V P+   A++     +A    +  V  +E +  + +    L+EH   VT + W+   
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 234 ETLVTGSLTGTVQFYGWP 251
             +VT         +   
Sbjct: 64  NRIVTCGTDRNAYVWTLK 81

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 4/79 (5%)

Query: 44  YYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFH 100
           Y++   +  +                 +    ++     +   +     H   VT   + 
Sbjct: 2   YHSFLVE-PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 101 PKITYIGTGSYDKAVRLWS 119
           P    I T   D+   +W+
Sbjct: 61  PDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 26/213 (12%), Positives = 55/213 (25%), Gaps = 16/213 (7%)

Query: 41  YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
            L   +      ++S         +      T     +     +         V    F 
Sbjct: 155 LLAAGSCDFKCRIFSAYIKE----VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210

Query: 101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV 160
              + +   S+D  V L       +V   +    P+L++ F      +A+G    +D   
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFP 266

Query: 161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTH-ELTTGRVISRFHLQ 219
            L++    A    F   +      +             D    +      G  +   H  
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-- 324

Query: 220 EHEPVTSLVWSVTGET----LVTGSLTGTVQFY 248
               V+ +     G+       T  + G +  +
Sbjct: 325 -KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 2/137 (1%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT 95
           +   +      +   + + +V   ++   +    D    L++ +       F G      
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 96  CARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG-GTG 154
            +            + DK          A   + S H + V  I+    GK   S   T 
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 155 SYDKAVRLWSITDGASV 171
             D  + +W +    S 
Sbjct: 348 GMDGGMSIWDVRSLESA 364

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
                     ++S+  C  G  L    +++                 H+  V   +F   
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276

Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
             +  +   D  +  W    GAS+       S VLS   S   KY+    TGS DK   +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV---TGSGDKKATV 332

Query: 163 WSI 165
           + +
Sbjct: 333 YEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 5e-14
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
               +             +    + P   ++  G     V +  +           H S 
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHESC 267

Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
           VLS+ F+ CGK+  S      D  +  W    GAS+       S VLS   S   KY+ +
Sbjct: 268 VLSLKFAYCGKWFVST---GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 196 GGEDGLV 202
           G  D   
Sbjct: 324 GSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 5e-13
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 7/173 (4%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
           W L     +R F GH    +C       T + TG  D  VR              D  S 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQ 226

Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
           + S+ + P G++LA G   S  + + +              H S VLS+ F+ CGK+  S
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVS 282

Query: 196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
            G+D L+       G  I  F  +E   V S   SV  + +VTGS       Y
Sbjct: 283 TGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 5e-12
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 112 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-- 169
           D  +          +    +H   V ++  S   +++ +GG       V++W I+     
Sbjct: 31  DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPGNK 85

Query: 170 ---SVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
              S     +  + + S    P G  L  GGE  
Sbjct: 86  SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 6/123 (4%)

Query: 132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
              P  S   +  G+          D  +          +    +H   V ++  S   +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPP--DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR 64

Query: 192 YLASGGEDGLVL--THELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
           ++ +GG+  + +           +S+      +  + S      G TL+ G    T+  +
Sbjct: 65  HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

Query: 249 GWP 251
              
Sbjct: 125 DLA 127

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 6e-09
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 89  GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-----SVRVFSDHVSPVLSIAFSP 143
            H + V          ++ TG     V++W I+        S     +  + + S    P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 144 CGKYLASGG 152
            G  L  GG
Sbjct: 108 DGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 5/81 (6%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLR-----IFVGHKQDVTCA 97
              T  H   V +V   +    +        ++W +              +     +   
Sbjct: 44  QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103

Query: 98  RFHPKITYIGTGSYDKAVRLW 118
           +  P    +  G     + +W
Sbjct: 104 KLLPDGCTLIVGGEASTLSIW 124

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.5 bits (168), Expect = 8e-14
 Identities = 22/199 (11%), Positives = 42/199 (21%), Gaps = 19/199 (9%)

Query: 68  SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT------ 121
                  ++ +E                   F      +   SY                
Sbjct: 156 YVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214

Query: 122 -DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW----SITDGASVRVFSD 176
              +   V              P      +G     D   R         D   +     
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274

Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL 236
            +             Y     E G++L +++ T +V           +T L  S   +T+
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDLRLSADRKTV 329

Query: 237 VTGSLTGTVQFYGWPSASK 255
           +     G +    +P    
Sbjct: 330 MVRKDDGKIYT--FPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.4 bits (160), Expect = 7e-13
 Identities = 15/189 (7%), Positives = 37/189 (19%), Gaps = 21/189 (11%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP-------LRIFV 88
           +++ R +   T+ +                  S  +         +           +  
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224

Query: 89  GHKQDVTCARFHPKITYIGTGSYDKAVRLW-------SITDGASVRVFSDHVSPVLSIAF 141
                    +  P+      G YD                D   +      +        
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
                Y            +  + +             + +  +  S   K +    +DG 
Sbjct: 285 GEFAAYYQGA---PEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGK 337

Query: 202 VLTHELTTG 210
           + T  L   
Sbjct: 338 IYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 7/148 (4%), Positives = 28/148 (18%), Gaps = 15/148 (10%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI--------FVGHKQDV 94
           P+       +    +   + +           ++       +                  
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 95  TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG 154
           +         Y         +  + +             + +  +  S   K +      
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVR--- 332

Query: 155 SYDKAVRLWSITDGASVRVFSDHVSPVL 182
             D  +  + +      R       P++
Sbjct: 333 KDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 133 VSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
           +    +  FSP  G  +A    G       +  ++    ++V       +  +      K
Sbjct: 2   IPSKFAEDFSPLDGDLIAFVSRGQ----AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTK 55

Query: 192 YLASGGEDG--LVLTHELTTGRVISRFHLQEHEPVTSLVWS 230
                G      +  ++  TG+       +    V ++   
Sbjct: 56  VAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVD 94

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 104 TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
             I   S  +   +  ++    ++V       +  +      K     GT      + ++
Sbjct: 16  DLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIY 71

Query: 164 SITDGASVRVFSDHVSPVLSIAFSPCGKY 192
               G     F +++  V ++     GK+
Sbjct: 72  DYRTG-KAEKFEENLGNVFAMGVDRNGKF 99

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 5e-13
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
            + +  +P G  +          +V    +       ++++H         SP G Y AS
Sbjct: 20  AVVLGNTPAGDKIQYCN----GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 196 GGEDGLVLTHELTTGRVISRFHLQEH 221
           G   G V   + T    I +  +   
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVF 101

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (125), Expect = 1e-08
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 6/101 (5%)

Query: 94  VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT 153
                  P    I   +   +V    +       ++++H         SP G Y     +
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC---AS 75

Query: 154 GSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKY 192
           G     VR+W  T               PV  I++    K 
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 8e-08
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 52  TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY 111
           T   +     G  +     T+     +  +    I+  H    T A+  P   Y  +G  
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 112 DKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKY 147
              VR+W  T               PV  I++    K 
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS- 134
            +          V H   V    + P  T I + S DK +++W++      +        
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
               +      + L S    S +  +   
Sbjct: 283 EDQQLGIIWTKQALVS---ISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV------- 128
           +          F  H + V   R++P  +   +   D  + L++  DG    V       
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS-PVLSIAFS 187
              H   V  + +SP G  +AS    S DK +++W++      +            +   
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 188 PCGKYLASGGEDGLV 202
              + L S   +G +
Sbjct: 291 WTKQALVSISANGFI 305

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 24/64 (37%)

Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT 244
            +SP G  +AS   D  +    + T +V     +        L    T + LV+ S  G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 245 VQFY 248
           + F 
Sbjct: 305 INFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 7e-06
 Identities = 10/115 (8%), Positives = 29/115 (25%), Gaps = 2/115 (1%)

Query: 5   HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA 64
              + D   F         V     +       +   L        +   +       +A
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254

Query: 65  LTGSRDTTARLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVRLW 118
            + S D T ++W++  +   +      + +            + + S +  +   
Sbjct: 255 -SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTG 239
            + +  +P G  +        V T  + +      +   EH    T    S +G    +G
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASG 76

Query: 240 SLTGTVQFYGW 250
            + G V+ +  
Sbjct: 77  DVHGNVRIWDT 87

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 18/144 (12%)

Query: 68  SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR 127
           S D T ++W+      +R   GHK+ + C ++  +   + +GS D  +RLW I  GA +R
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLR 212

Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---------VRVFSDHV 178
           V   H    L        K + SG   +YD  +++W +              +R   +H 
Sbjct: 213 VLEGH--EELVRCIRFDNKRIVSG---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 179 SPVLSIAFSPCGKYLASGGEDGLV 202
             V  + F      + S   D  +
Sbjct: 268 GRVFRLQFD--EFQIVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 36  NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT 95
           N  +       +GH   +  ++   + +  +GS D T RLW +E    LR+  GH++   
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLEGHEE--L 220

Query: 96  CARFHPKITYIGTGSYDKAVRLWSITDGAS---------VRVFSDHVSPVLSIAFSPCGK 146
                     I +G+YD  +++W +              +R   +H   V  + F     
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF 278

Query: 147 YLASGGTGSYDKAVRLW 163
            + S    S+D  + +W
Sbjct: 279 QIVSS---SHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 4e-10
 Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 18/186 (9%)

Query: 72  TARLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS 130
           +  +W +     + +                   YI + S D+ +++W+ +    VR  +
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 131 DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG 190
            H   +  + +           +GS D  +RLW I  GA +RV   H    L        
Sbjct: 176 GHKRGIACLQYRDRLVV-----SGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDN 228

Query: 191 KYLASGGEDGLVLTHELTTGRVISRFH-------LQEHE-PVTSLVWSVTGETLVTGSLT 242
           K + SG  DG +   +L                 L EH   V  L +      +V+ S  
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD 286

Query: 243 GTVQFY 248
            T+  +
Sbjct: 287 DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 5e-10
 Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 52/272 (19%)

Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
           S     V+ ++   + +  +G RD T ++W    +   RI  GH   V C ++  ++   
Sbjct: 12  SETSKGVYCLQYDDQKIV-SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 107 GTGSYD--------------------------------------KAVRLWS---ITDGAS 125
           G+                                          +++ +W     TD   
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
            RV   H + V  + F       ASG     D+ +++W+ +    VR  + H   +  + 
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV 245
           +      + SG  D  +   ++  G  +      E             + +V+G+  G +
Sbjct: 186 YRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYDGKI 240

Query: 246 QFYGWPSASKIGIGVYPRCAAQPVGFEAATLA 277
           + +   +A          C    V        
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 81  MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
           +  +       + V C ++  +   I +G  D  +++W        R+ + H   VL + 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 141 FSPC 144
           +   
Sbjct: 63  YDER 66

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 187
               H++ V++        Y+    TG+ DK +R++   +   +   S H   V ++ ++
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVI---TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 188 PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF 247
             G  ++   +  + +                       +V     + +VTGS   T+  
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 248 YGWPSASKI 256
           +  P  S +
Sbjct: 123 WKLPKESSV 131

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 2/143 (1%)

Query: 47  SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
            GH  +V +         +TG+ D   R++       L    GH   V   ++      +
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              +              +      + +                  TGS D  + +W + 
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV--TGSRDNTLHVWKLP 126

Query: 167 DGASVRVFSDHVSPVLSIAFSPC 189
             +SV    +     L       
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEE 149

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 9/202 (4%)

Query: 49  HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGT 108
           H  +V +V      + ++GS D T  +W + QM  L I  GH   +    +  +     +
Sbjct: 160 HMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218

Query: 109 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG 168
            S D  +R+W + +G  +     H + V  +  S      A+            +S    
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK-- 276

Query: 169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV 228
                FS H + + +I        +   G +     + L +G+++    L++ + + S+ 
Sbjct: 277 -----FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 331

Query: 229 WSVTGETLVTGSLTGTVQFYGW 250
           +      +      G       
Sbjct: 332 FK-GKTLVAAVEKDGQSFLEIL 352

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 81  MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVL 137
           M  ++I    K  ++  +  P  + +   S+D ++ ++     A    +     +  P+L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 138 SIAFSPCGKYLASGGTGSYDKAVRLW 163
              F          GT   +      
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDL 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 4e-11
 Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

Query: 66  TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
            G    +++ ++                V    F P+  ++ T   D  +  W++     
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
           ++ F+   +    +  +     L      + D   +  +  D
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCL---ATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 7e-11
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVL 182
           V++       +  I   P    L      S+D ++ ++     A    +     +  P+L
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLIT---SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 183 SIAFSPCGKYLASGG 197
              F          G
Sbjct: 61  CCNFIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 2/69 (2%)

Query: 171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF-HLQEHE-PVTSLV 228
           V++       +  I   P    L     DG +  ++               ++ P+    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 229 WSVTGETLV 237
           +    +  +
Sbjct: 64  FIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 29/199 (14%), Positives = 51/199 (25%), Gaps = 30/199 (15%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVRVF 129
                     I V +         +   T     S       +  V+ + +         
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 130 SDHVSP----VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS---------- 175
            +                  +  A     S D  V +    D       S          
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACS---SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 176 -----DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS 230
                +   PV SI FSP  K+L + G DG++    L T + I  F   +    + +  +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA 301

Query: 231 VTGETLVTGSLTGTVQFYG 249
            +   L   +   T +   
Sbjct: 302 CSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 47  SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE---QMYPLRIFVGHKQDVTCARFHP- 101
                 +  ++      L L  S D +  ++  +   +   L   + +K  + C  F   
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 102 KITYIGTGSYDKAVRLW 118
               I  G+    +   
Sbjct: 68  TDLQIYVGTVQGEILKV 84

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 26/179 (14%), Positives = 46/179 (25%), Gaps = 9/179 (5%)

Query: 44  YYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG---HKQDVTCARFH 100
            Y +G D+    V+     +AL           + + +Y               T ARF 
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217

Query: 101 PKITYIGTGSYDKAVRLWSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
                  T           + T     + F+D      +   SP       G        
Sbjct: 218 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR---- 273

Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL 218
           +  + +     ++   +       +AF   G  L  GG    +      T   +    L
Sbjct: 274 LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 14/163 (8%), Positives = 41/163 (25%), Gaps = 12/163 (7%)

Query: 99  FHPKITYIGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYD 157
                 Y+   +Y   + +  +      +           +   +P  +        ++ 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV--LNNHY 61

Query: 158 KAVRLWSITDGASVRVF------SDHVSPVLSIAFSPCGKYLASGGED-GLVLTHELTTG 210
             +    +    +           +    + S A SP GK + +       +  H +   
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 211 RVISRFHLQEHEPVTSL--VWSVTGETLVTGSLTGTVQFYGWP 251
             +  F   +      +          L+  +  G++   G  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 10/109 (9%)

Query: 139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYL-ASG 196
            A     +Y+      +Y   + +  +      +           +   +P  +      
Sbjct: 2   PALKAGHEYMI---VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58

Query: 197 GEDGLVLTHELTTGRVISRFHLQEH-----EPVTSLVWSVTGETLVTGS 240
              G +   +L T +     +L          + S   S  G+ +    
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL-VTGSLT 242
            A     +Y+        +   ++ +  V     + +     + + +    T  V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 243 GTVQFY 248
           G +   
Sbjct: 62  GDIYGI 67

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.0 bits (143), Expect = 8e-11
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-HVSPV 181
           G+  +V   H   + +++ S  GK L S      +  +  W I+ G S RVF D H + +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFS---ADAEGHINSWDISTGISNRVFPDVHATMI 58

Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
             I  +  G       +D L +     +G   S+    + 
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 98

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 1e-09
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 84  LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFS 142
            ++  GH + +T          + +   +  +  W I+ G S RVF D H + +  I  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 143 PC 144
             
Sbjct: 65  SK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 2e-08
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL 227
           G+  +V   H   + +++ S  GK L S   +G + + +++TG     F       +T +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 228 VW 229
             
Sbjct: 62  KT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 4e-08
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS--DHV 133
            +  ++     +  H   V C  + P    + TGS D +V +W++   +   +     H 
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
              ++         + S      D  ++ W++ 
Sbjct: 269 MSSVNSVIWLNETTIVSA---GQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 21/197 (10%), Positives = 57/197 (28%), Gaps = 2/197 (1%)

Query: 8   HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTG 67
           +      +  +   +    V A  +         L      ++ +  ++    + +A+ G
Sbjct: 96  NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG 155

Query: 68  SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR 127
                               + H  ++T   F     ++      + V  +S+ +   + 
Sbjct: 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 215

Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV--FSDHVSPVLSIA 185
             +        +A            TGS D +V +W++   +   +     H    ++  
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275

Query: 186 FSPCGKYLASGGEDGLV 202
                  + S G+D  +
Sbjct: 276 IWLNETTIVSAGQDSNI 292

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 4e-06
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFH 100
             +T           +       TGS D +  +W++     +P+ I   H      +   
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

Query: 101 PKITYIGTGSYDKAVRLWSIT 121
              T I +   D  ++ W++ 
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 2/78 (2%)

Query: 48  GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITY 105
           GH+  + ++ + + G    +   +     W +      R+F   H   +T  +   K   
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 106 IGTGSYDKAVRLWSITDG 123
                 D    + +   G
Sbjct: 70  FTVSWDDHLKVVPAGGSG 87

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 9/189 (4%)

Query: 45  YTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG-HKQDVTCARFHPKI 103
           Y  G D+ V   EA +                  + +                      I
Sbjct: 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209

Query: 104 TYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
                 +Y   +    +  G               S A +P                +  
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-----AYNVLES 264

Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE 222
           + +   AS++          S+  S  G  +  GG  G +  ++  T     +  L  + 
Sbjct: 265 FDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

Query: 223 PVTSLVWSV 231
              SL    
Sbjct: 324 S-MSLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 9/120 (7%)

Query: 105 YIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
           YI   +    + +      A  +V   +D     +    +P G+   +  T +  +++  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYA--TVNKSESLVK 60

Query: 163 WSITDGASVRVFSDH-----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
             +  G ++           V  +   A SP GK LA       +              +
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 83  PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
            L+   GH + +T    +P    + +GSYD  +  WS +         DH + ++S+  S
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 143 PCGKY 147
              +Y
Sbjct: 56  KAQEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 1e-08
 Identities = 9/91 (9%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI-TDGASVRVFSDHVS 134
               +   +        +        +   + TGS D  + ++S+      ++  + H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
            V ++ +      +    +   D  ++ W++
Sbjct: 260 GVNNLLWETPSTLV----SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 5e-08
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGHKQDVTCARFHP 101
              +        + E   + L  TGS DT   ++S+++ M  ++    HK  V    +  
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268

Query: 102 KITYIGTGSYDKAVRLWSI 120
             + + +   D  ++ W++
Sbjct: 269 P-STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 6e-07
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
           ++  S H   + ++  +P    L SG   SYD  +  WS +         DH + ++S+ 
Sbjct: 6   LKTISGHNKGITALTVNP----LISG---SYDGRIMEWSSSSM-----HQDHSNLIVSLD 53

Query: 186 FSPCGKY 192
            S   +Y
Sbjct: 54  NSKAQEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVW 229
           ++  S H   + ++  +P    L SG  DG ++    ++         Q+H   + SL  
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDN 54

Query: 230 S 230
           S
Sbjct: 55  S 55

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVS-PVLSIAFSPC- 189
           +    +++ P    +A     S    VR     D     V  F+ H S  V ++ FSP  
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKS--AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 190 -GKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-------PVTSLVWSVTGETLVTGSL 241
             +YL SG E G V+    T  +  +   +           P++ + W   G  L     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 242 TGTVQFYGW 250
                    
Sbjct: 136 GRDNFGVFI 144

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 17/115 (14%)

Query: 94  VTCARFHPKITYIGTGSYDKA-VRLWSITDG--ASVRVFSDHVS-PVLSIAFSPC--GKY 147
            T   + P    I       A VR     D     V  F+ H S  V ++ FSP    +Y
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 148 LASGGTGSYDKAVRLWSITDGASV--------RVFSDHVSPVLSIAFSPCGKYLA 194
           L S   G     V +W  T               F     P+  I++   G+ L 
Sbjct: 80  LCS---GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
            S E +  +       Q    A          T   D  +R+W +T    V+ ++     
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 136 V--LSIAFSPCG-KYLASGGTGSYDKAVRLWSI 165
           +    +     G   + S    S D  +  + +
Sbjct: 296 LGNQQVGVVATGNGRIIS---LSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 43  PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC---ARF 99
                     ++++         T   D T R+W +     ++ +   KQ +        
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304

Query: 100 HPKITYIGTGSYDKAVRLWSI 120
                 I + S D  +  + +
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 63  LALTGSRDTTARLWSLE--QMYPLRIFVGHKQD-VTCARFHPKI--TYIGTGSYDKAVRL 117
           +A    +    R       ++ P+  F GH    VT  +F P     Y+ +G     V +
Sbjct: 32  IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 91

Query: 118 WSITDGASV--------RVFSDHVSPVLSIAFSPCGKYLA 149
           W  T               F     P+  I++   G+ L 
Sbjct: 92  WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCG-KYLASGGED 199
              +  A   T   D  +R+W +T    V+ ++     +    +     G   + S   D
Sbjct: 261 LDSQKFA---TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 200 GLV 202
           G +
Sbjct: 318 GTL 320

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 179 SPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEH--EPVTSLVWS--VTG 233
           +    +++ P    +A   G+   V   +    +V        H    VT++ +S     
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 234 ETLVTGSLTGTVQFYGWPS 252
           + L +G  +G V  +GW  
Sbjct: 78  QYLCSGDESGKVIVWGWTF 96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 10/215 (4%)

Query: 44  YYTSGHDMTVWSVEACSKG---LALTGSRDTTARLWSLEQMYPLRIFV----GHKQDVTC 96
                    +  +    +G     +   RD      S +    L                
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168

Query: 97  ARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
                +   +G        +       AS R      S V  + FSP             
Sbjct: 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 228

Query: 157 DKAV-RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR 215
             +     S      +    + V   +        +  A+ G D  +   ++TT + + +
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288

Query: 216 FHLQEHE-PVTSLVWSVTGE-TLVTGSLTGTVQFY 248
           + L + +     +    TG   +++ SL GT+ FY
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 22/211 (10%), Positives = 49/211 (23%), Gaps = 20/211 (9%)

Query: 63  LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
            ++T        L          +       V  +R      Y+     D  V +  +  
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 123 G-----ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH 177
                 A +++ S+  S   S       KY  +     +     +         ++ S  
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA--GAYWPPQYVIMDGETLEPKKIQSTR 150

Query: 178 VSPV-----------LSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
                           +I  S        +  E G +L  + T    +    +     + 
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210

Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
                 +    +T +              K+
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 6/116 (5%)

Query: 153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
           T      + L   +      V     +       S  G+YL   G DG V   +L     
Sbjct: 37  TLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95

Query: 213 ISRFHLQEHEPVTSLVWSVT----GETL-VTGSLTGTVQFYGWPSASKIGIGVYPR 263
            +   ++      S+  S       +                  +     I     
Sbjct: 96  TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 18/226 (7%), Positives = 47/226 (20%), Gaps = 23/226 (10%)

Query: 37  LQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC 96
               +L    +GH  + +++ + S   +  G R     ++      P+            
Sbjct: 62  SLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121

Query: 97  ARFHP-KITYIGTGSY-------DKAVRLWSITDGASVRVFSDHVSPVLS-------IAF 141
                  I    + +          A    S+   +  ++        +           
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG 181

Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
           S      AS              +      +          +   +  G  + +     L
Sbjct: 182 SCPASLAAS---DLAAAPAAAGIVG----AQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234

Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF 247
                     + +     E     +  +   G  +V          
Sbjct: 235 QGDIPAAGATMKAAIDGNESG-RKADNFRSAGFQMVAKLKNTDGIM 279

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 23/209 (11%), Positives = 52/209 (24%), Gaps = 29/209 (13%)

Query: 52  TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI------FVGHKQDVTCARFHPKITY 105
             + +   +        RD +    +        I          +  +    +  K   
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 106 IGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGG----------- 152
           +   +Y   +    ++ G    +           +  + P G    +             
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 153 ------TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL--ASGGEDGLVLT 204
                   +  + V +     G  +  F      + SI  S   K L  A    D  +  
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 205 HELTTGRVISRFHLQEHEPVTSLVWSVTG 233
           H+  +G  +   +   H P   +  +  G
Sbjct: 328 HDAESGEELRSVNQLGHGP-QVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 20/146 (13%)

Query: 135 PVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY 192
           P +  A +P  +  Y+      +      +     G  + +      P  +   +  G +
Sbjct: 3   PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSF 60

Query: 193 LA----------SGGEDGLVLTHELTTGRVISRFHLQEHEP------VTSLVWSVTGETL 236
           +A           G     V   +  T    +   L +               +  G+TL
Sbjct: 61  IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

Query: 237 VTGSLTGTVQFYGWPSASKIGIGVYP 262
           +    +            K    +  
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLD 146

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 102 KITYIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
           +  YI      + + +W++    ++ +    D    V  +  SP  +YL  G     +  
Sbjct: 4   QTVYI-ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVG--VRPEFR 60

Query: 160 VRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKY 192
           V  + I       +    S     +  I+    G++
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF 96

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 153 TGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTT 209
                + + +W++    ++ +    D    V  +  SP  +YL      +  VL + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 210 GRVISRFHLQEHEP 223
                 F  +   P
Sbjct: 69  DDGALTFAAESALP 82

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 3/61 (4%)

Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
             S    + +  +T            +P+     SP G  +      ++   V +     
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYV--ANAHSNDVSIIDTAT 63

Query: 168 G 168
            
Sbjct: 64  N 64

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGR 211
             S    + +  +T            +P+     SP G  +  +      V   +  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 212 VISRFH 217
           VI+   
Sbjct: 66  VIATVP 71

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 12/105 (11%), Positives = 21/105 (20%), Gaps = 3/105 (2%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
                +            +       K        Y   V +                 P
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP 246

Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP 180
              IA +P GK +      S+   V +            +   +P
Sbjct: 247 A-GIAVTPDGKKVYV--ALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 3/116 (2%)

Query: 118 WSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
           W + +   S +V                   L S  T      + L        V+V   
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSV-TLRDAGQIALVDGDSKKIVKVIDT 60

Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT 232
             +       S  G+YL   G D  +   +L          ++      S+  S  
Sbjct: 61  GYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 1/113 (0%)

Query: 76  WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
            ++    P RI     Q+            +   S      +                  
Sbjct: 156 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 215

Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 188
             + + +P G  +    +      + L S  DG            V   A+SP
Sbjct: 216 DETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 267

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 99  FHPKITYIG-TGSYDKAVRLW-SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
           F  +I Y+  T        L  S  DG +  V      P++S A+SP G  LA     S 
Sbjct: 2   FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG 61

Query: 157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
             A+ + ++ +G +VR  +       + AFSP G  LA
Sbjct: 62  RSALVIQTLANG-AVRQVASFPRHNGAPAFSPDGSKLA 98

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 21/164 (12%), Positives = 38/164 (23%), Gaps = 23/164 (14%)

Query: 56  VEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAV 115
             A   G   T        +    +    R     K             +I  G     V
Sbjct: 223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTV 282

Query: 116 RLWSIT----------DGASVRV-FSDHVSPVLSIAFSPCGKYLASGG------TGSYDK 158
            + +I           +     V   +     L   F   G    +          +   
Sbjct: 283 SVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342

Query: 159 AVRLWS------ITDGASVRVFSDHVSPVLSIAFSPCGKYLASG 196
           A++ ++      I     V+    H    L+ +    GK+L   
Sbjct: 343 AIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 29/145 (20%)

Query: 40  RYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY--------PLRIFVGHK 91
           RY+P   + H +         K     G    T  + +++++              V   
Sbjct: 252 RYIPVPKNPHGLNTSPDG---KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP 308

Query: 92  QDVTCA---RFHPKITYIGTGSYDKAVRLWSI------TDGASVRVFSD---------HV 133
           +         F  +     T   D  V  W+I       +G  V              H 
Sbjct: 309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368

Query: 134 SPVLSIAFSPCGKYLASGGTGSYDK 158
              L+ +    GK+L      S D+
Sbjct: 369 HASLTESRDADGKWLVVLSKFSKDR 393

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.49
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.42
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.33
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.24
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.95
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.88
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.56
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.4
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.17
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.97
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.84
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.82
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.78
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.32
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.88
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.49
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.2
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.91
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.11
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.62
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.09
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.87
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.16
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.62
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.2
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	82.23

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-44  Score=306.26  Aligned_cols=270  Identities=16%  Similarity=0.216  Sum_probs=242.8

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      +|...|.+++|||+  |++||+|+ ||.|+|||+...          ..+|.+.|.+++|+|++++ ++++.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~--g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCC--CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            68899999999999  99999987 799999998765          4578899999999999987 8999999999999


Q ss_pred             CCCC--eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           78 LEQM--YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        78 ~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      +...  +....+..|...+.+++|+|++.++++++.|+.+++|++.+++.......|...+.+++|+++++.+++++.  
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~--  203 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL--  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            8744  456677889999999999999999999999999999999999999998899999999999999999999998  


Q ss_pred             CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCE
Q psy519          156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  235 (351)
                       |+.+++||+++++.+..+ .+..+|.+++|+|+++++++++.|+.+++||+++++.....  .|...|.+++|+|++++
T Consensus       204 -d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~  279 (337)
T d1gxra_         204 -DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             -TSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSE
T ss_pred             -cccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccccc--ccccccceEEECCCCCE
Confidence             999999999999888776 57889999999999999999999999999999988876543  56789999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEe
Q psy519          236 LVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLRE  287 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (351)
                      |++++.||.|++||+++++.+..    ..+.+++|+|+++.+++++.++.++.|++
T Consensus       280 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999987754    56678999999999999988875554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-42  Score=293.59  Aligned_cols=276  Identities=15%  Similarity=0.198  Sum_probs=239.2

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~   79 (351)
                      +...+++.+..++++|+  |+.|+.+. ++.+.+|++...     +.+|...|++++|+|+|++ ++|+.||+|++||+.
T Consensus        12 ~p~~~r~~~~~~a~~~~--g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          12 LPRTARGTAVVLGNTPA--GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CCCCCTTCCCCCEECTT--SSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred             CCCCCCCCeEEEEEcCC--CCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeee
Confidence            34445567778999999  99999884 567999999876     6789999999999999988 899999999999998


Q ss_pred             CCeee--EEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE-EEEEecC
Q psy519           80 QMYPL--RIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY-LASGGTG  154 (351)
Q Consensus        80 ~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~  154 (351)
                      +++..  ..+..|..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...|.+++|+|++++ +++|+. 
T Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~-  167 (311)
T d1nr0a1          89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-  167 (311)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccc-
Confidence            77643  557889999999999999999999886  456999999999999999999999999999999885 777887 


Q ss_pred             CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeec------cCCCCEEEEE
Q psy519          155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL------QEHEPVTSLV  228 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~  228 (351)
                        |+.|++||+++++....+..|..+|.++.|+|+++++++++.|+.+++||++++.....+..      .|...|.+++
T Consensus       168 --d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         168 --DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             --TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred             --ccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              99999999999999999999999999999999999999999999999999999888776643      2456899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------cceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSASKIGIGV------YPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      |+|++++|++|+.||.|++||+++++.++...      ...+.+.+++..+++++.+|   .+++|+.
T Consensus       246 ~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG---~i~~wd~  310 (311)
T d1nr0a1         246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG---FINFVNP  310 (311)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC---CEEEEET
T ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC---EEEEEeC
Confidence            99999999999999999999999998877532      23456777788888888877   5666664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-41  Score=286.22  Aligned_cols=277  Identities=18%  Similarity=0.286  Sum_probs=254.5

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~   77 (351)
                      .+...||..+|++++|+|+  +++||+|+.||+|++||+.+.     +.+|...|.+++|+|++.+ +++..++.+.+|+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCEEECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             cEEEcCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            3456789999999999999  999999999999999999877     7789999999999999988 8999999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ....+....+..|...+.++.|+|+++.+++++.|+.+++||+++++....+..|...+.+++|+|++++|++++.   |
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d  164 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN---D  164 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---T
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC---C
Confidence            9998888888899999999999999999999999999999999999999999999999999999999999999998   9


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCC--------------------cEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG--------------------KYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      +.|++|++++++....+..|...+..+.|+|++                    .++++++.|+.|++||+++++.+..+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            999999999999999999999999999998753                    468899999999999999999988886


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       218 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                       .|...|.+++|+|++++|++|+.||.|++||+++++.+..     ..+..++|+|++..+++++.|+.   +++|+
T Consensus       245 -~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~---i~iWd  317 (317)
T d1vyhc1         245 -GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT---VKVWE  317 (317)
T ss_dssp             -CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE---EEEEC
T ss_pred             -CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe---EEEeC
Confidence             5678999999999999999999999999999999887754     46678999999999999988874   55654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-41  Score=287.13  Aligned_cols=242  Identities=19%  Similarity=0.247  Sum_probs=214.6

Q ss_pred             CCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeC--CCc
Q psy519            3 LSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSR--DTT   72 (351)
Q Consensus         3 ~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~--d~~   72 (351)
                      ..++..+|...|.+++|+|+  |++||+|+.||.|++|++...       +..|..+|.+++|+|++++ ++++.  +..
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~  127 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  127 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             eeEEEcCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccc
Confidence            34456789999999999999  999999999999999999876       5678999999999999987 66665  466


Q ss_pred             EEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEE
Q psy519           73 ARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY-IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  151 (351)
Q Consensus        73 i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  151 (351)
                      ++||++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+++++....+..|..+|.+++|+|++++++++
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence            999999999999999999999999999999874 7889999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCeEEEEEccCCceeEEec-------cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC--C
Q psy519          152 GTGSYDKAVRLWSITDGASVRVFS-------DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH--E  222 (351)
Q Consensus       152 ~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~  222 (351)
                      +.   |+.|++||+++++....+.       +|...|.+++|+|++++|++|+.||.|++||+++++.++.+.....  .
T Consensus       208 ~~---d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         208 GG---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             ET---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             cc---cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence            98   9999999999988777664       4788999999999999999999999999999999999988865433  2


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          223 PVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       223 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      .+.++.|  +++.|++++.||.|++||.+
T Consensus       285 ~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             eEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            3445555  56679999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-40  Score=288.56  Aligned_cols=271  Identities=25%  Similarity=0.324  Sum_probs=225.9

Q ss_pred             CCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------------------cCCCccceEEEEECCCCcE-
Q psy519            9 GDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------------------TSGHDMTVWSVEACSKGLA-   64 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------------------~~~~~~~i~~~~~~~~~~~-   64 (351)
                      +|.+.|++++|||+  |++||+|+ |+.|++|++.+.                       ...|...|++++|+|++++ 
T Consensus        60 ~H~~~V~~l~fs~d--g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCcEEEEEECCC--CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            58999999999999  99999986 899999999765                       2357788999999999988 


Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEcc-
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP-  143 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-  143 (351)
                      ++|+.|+.|++|+...++.+..+.+|...|.++++++++..+++++.++.+++||.++.........+... .++.+++ 
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~  215 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV-TTVAVSPG  215 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECST
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccc-ccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999988877777655444 4555554 


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCceeEEe-------ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE-
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASVRVF-------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR-  215 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-  215 (351)
                      ++++|++++.   |+.|++||++++.....+       ..|..+|.+++|+|++++|++++.||.|++||++++..... 
T Consensus       216 ~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         216 DGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             TCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             CCCeEEEEcC---CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence            8899999998   999999999988776654       35788999999999999999999999999999986543221 


Q ss_pred             ----------eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----ecce------eEEecCCceee
Q psy519          216 ----------FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG-----VYPR------CAAQPVGFEAA  274 (351)
Q Consensus       216 ----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~------~~~s~~~~~~~  274 (351)
                                ....+...|.+++|+|++++|++|+.||.|++||+++++.+...     .+..      ..|+|++..++
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~  372 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  372 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE
Confidence                      12245678999999999999999999999999999999887652     2333      34678999999


Q ss_pred             eeeccceeeEEE
Q psy519          275 TLAANSRVRTLR  286 (351)
Q Consensus       275 ~~~~~~~~~~~~  286 (351)
                      +++.|+.++.|+
T Consensus       373 s~s~Dg~I~iW~  384 (388)
T d1erja_         373 TGSGDCKARIWK  384 (388)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEeCCCEEEEEe
Confidence            999887554443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=275.89  Aligned_cols=235  Identities=23%  Similarity=0.342  Sum_probs=217.4

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ..+|...|.+++|+|+  +++|++++.||.|++|++...       ...|...+.+++|+|++.+ ++++.|+.+++|++
T Consensus        93 ~~~h~~~I~~v~~s~d--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CSCTTSBEEEEEECTT--SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecCCCCcEEEEEEcCC--CCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578899999999999  999999999999999998755       5678899999999999988 89999999999999


Q ss_pred             CCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCC
Q psy519           79 EQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~  158 (351)
                      .+++.......|...+.+++|++++..+++++.|+.+++||+++++.+..+. +...|.+++|+|+++++++++.   |+
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~---d~  246 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME---SS  246 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET---TS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc---cc
Confidence            9999999999999999999999999999999999999999999999887775 7899999999999999999998   99


Q ss_pred             eEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEE
Q psy519          159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVT  238 (351)
Q Consensus       159 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  238 (351)
                      .+++||+++++... ...|...|.+++|+|++++|++++.||.|++||+.+++.+..+  .+...|.+++|+|++++|++
T Consensus       247 ~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         247 NVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEE
T ss_pred             cccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEE
Confidence            99999998887654 4578999999999999999999999999999999999988776  46789999999999999999


Q ss_pred             EeCCCeEEEEeC
Q psy519          239 GSLTGTVQFYGW  250 (351)
Q Consensus       239 ~~~dg~i~i~~~  250 (351)
                      |+.||.|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-38  Score=267.13  Aligned_cols=276  Identities=21%  Similarity=0.307  Sum_probs=241.7

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      +..+||.++|++++|+|+  +++||+|+.||.|++||+.+.     +..|...|.+++|+|++.+ ++++.|+.+++|+.
T Consensus        49 ~tL~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEECCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             EEECCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            446799999999999999  999999999999999999887     6689999999999999988 99999999999997


Q ss_pred             CCC----eeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           79 EQM----YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        79 ~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      ...    +....+.+|........... +..+.....+.....+.............+...+....+.+.+.+++++.. 
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  204 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-  204 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred             cccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec-
Confidence            653    34456667777666655554 456777788999999999888877777778899999999999999999998 


Q ss_pred             CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEEcCCC
Q psy519          155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVWSVTG  233 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~  233 (351)
                        |+.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||++.......+... +...+.+++|+|++
T Consensus       205 --d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         205 --DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             --TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             --CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence              999999999999999999999999999999999999999999999999999998887766433 33679999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          234 ETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       234 ~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ++|++|+.||.|++||+.+++.+..     ..+.+++|+|++..+++++.|+.   +++|+
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~---v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF---LKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC---EEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE---EEEeC
Confidence            9999999999999999999988764     46678999999999999988874   56664

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-38  Score=267.57  Aligned_cols=274  Identities=15%  Similarity=0.138  Sum_probs=221.9

Q ss_pred             CCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc------cCCCccceEEEEECCCCcEEEEeCCCcEEEEe
Q psy519            4 SHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY------TSGHDMTVWSVEACSKGLALTGSRDTTARLWS   77 (351)
Q Consensus         4 ~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~   77 (351)
                      .++..||..+|++++|+|+  +++|++|+.||.|++||+.++      ...|...|++++|+|++.+++++.|+.+++|+
T Consensus         5 ~~~~~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             ceEcCCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence            4678999999999999999  999999999999999999876      45789999999999999999999999999999


Q ss_pred             CCCCee---eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecC
Q psy519           78 LEQMYP---LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG  154 (351)
Q Consensus        78 ~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  154 (351)
                      ......   ......+...+.+++|+|+++.+++++ ++.+.+|+...  .....  ....+.+++|+|+++++++++. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~-  156 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQ-  156 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEET-
T ss_pred             cCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccccccccccccccccccccc-
Confidence            865432   222345677889999999998877665 67899999542  22222  3456789999999999999999 


Q ss_pred             CCCCeEEEEEccCCceeE-EeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee--ccCCCCEEEEEEcC
Q psy519          155 SYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH--LQEHEPVTSLVWSV  231 (351)
Q Consensus       155 ~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~  231 (351)
                        |+.|++||+++++... ....|..+|.+++|+|++++|++++.|+.|++||+.++.......  ..|...|.+++|+|
T Consensus       157 --dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         157 --DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             --TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              9999999998876543 344688999999999999999999999999999998876654332  13457899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeee-------eecceeEEecCCceeeeeeccceeeEEEeeec
Q psy519          232 TGETLVTGSLTGTVQFYGWPSASKIGI-------GVYPRCAAQPVGFEAATLAANSRVRTLREMHE  290 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      ++++|++|+.||.|++||+++++....       .......+++++..+++++.|+   .+++|+.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~---~i~iWdl  297 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS---NIKFWNV  297 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS---CEEEEEC
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC---EEEEEec
Confidence            999999999999999999987654322       1122344567778888888776   5666664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-39  Score=278.09  Aligned_cols=236  Identities=16%  Similarity=0.186  Sum_probs=204.4

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM   81 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~   81 (351)
                      ..++|+|++|+|+  |++||+++.++.|++|+....       +.+|.++|++++|+|++++ ++++.|++|+|||+.++
T Consensus         6 ~~~pIt~~~~s~d--g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCCeEEEEECCC--CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            3578999999999  999999999999999999765       6789999999999999988 99999999999999876


Q ss_pred             ee--eEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce----eEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           82 YP--LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        82 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      +.  ...+.+|...|.+++|+|+++.|++++.|+.+++|++.....    ......|...|.+++|+|++++|++++.  
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--  161 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--  161 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc--
Confidence            54  445567889999999999999999999999999999876543    2334568899999999999999999999  


Q ss_pred             CCCeEEEEEccCC------------------ceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          156 YDKAVRLWSITDG------------------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       156 ~d~~i~i~d~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                       |+.+++||+...                  +.+.....|...+.+++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus       162 -D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         162 -DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             -TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             -CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee
Confidence             999999998643                  3455666788999999999999999999999999999999999988876


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy519          218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS  252 (351)
Q Consensus       218 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~  252 (351)
                       .+..+|.+++|+|++++|++|. |+.+++|....
T Consensus       241 -~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         241 -SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             -CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             -cccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence             5667899999999998888765 67666665543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-36  Score=263.47  Aligned_cols=293  Identities=20%  Similarity=0.295  Sum_probs=234.3

Q ss_pred             EEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee---------
Q psy519           28 LANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV---------   88 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~---------   88 (351)
                      ...+..++...+|+....         ..+|.+.|++++|+|+|++ ++| .|+.|+|||+.+++.+..+.         
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg-~d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEE-eCCeEEEEEecccceEeeecccccccccc
Confidence            345667788889986543         3369999999999999998 555 59999999999888776553         


Q ss_pred             ---------CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           89 ---------GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        89 ---------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                               .|...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++++++++..+++++.   ++.
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~  186 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRT  186 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc---cee
Confidence                     35667999999999999999999999999999999999999999999999999999999999998   999


Q ss_pred             EEEEEccCCceeEEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEEEEeec------cCCCCEEEEEEcCC
Q psy519          160 VRLWSITDGASVRVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVISRFHL------QEHEPVTSLVWSVT  232 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~  232 (351)
                      +++||.++.........+.. ...+.+.+ ++++|++++.||.|++||.+++.....+..      .|...|.+++|+|+
T Consensus       187 i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             eeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            99999998887777765554 44555554 889999999999999999999887766532      24568999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceee-----------------eeecceeEEecCCceeeeeeccceeeEEEeeeceeCce
Q psy519          233 GETLVTGSLTGTVQFYGWPSASKIG-----------------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPV  295 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~  295 (351)
                      +++|++++.||.|++||+.++....                 ...+..++|+|++..+++++.++   .+++|+..+++.
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~vwd~~~~~~  342 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGNP  342 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCCE
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC---EEEEEECCCCcE
Confidence            9999999999999999998765432                 13456799999999999998887   466777766654


Q ss_pred             EEE--------eeEE----EEecCCceeeccEEEecCCccccceee
Q psy519          296 VVV--------ESFI----VEIRPDKWYEANLIVLDDDLKECNLET  329 (351)
Q Consensus       296 ~~~--------~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~  329 (351)
                      ...        .+..    ..|+|++.++... ..|..|++|+++.
T Consensus       343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~-s~Dg~I~iW~~~k  387 (388)
T d1erja_         343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATG-SGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEE-ETTSEEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEecCcccCCCCCEEEEE-eCCCEEEEEeeee
Confidence            432        2211    1367888877654 5788899999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-36  Score=251.36  Aligned_cols=271  Identities=21%  Similarity=0.280  Sum_probs=239.8

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.++|++++|+|++.+ ++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+++++..++.+..|+....+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE   92 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc
Confidence            6789999999999999988 999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEE
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLT  204 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  204 (351)
                      ....+..+...+.++.++|+++.+++++.   |+.+++||+++++.+..+..|...+.+++|+|++++|++++.|+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  169 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccceeeeccCCCceEEeecc---CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence            88888889999999999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCC--------------------CCEEEEEeCCCeEEEEeCCCCceeee-----e
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVT--------------------GETLVTGSLTGTVQFYGWPSASKIGI-----G  259 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~i~~~~~~~~~~~-----~  259 (351)
                      |++.+++....+. .+...+..+.|+|+                    +.++++++.|+.|++|++++++.+..     .
T Consensus       170 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         170 WVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EeeccceeeEEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            9999999888775 56678888988775                    35789999999999999999987765     4


Q ss_pred             ecceeEEecCCceeeeeeccceeeEEEeeeceeCceE--------EEeeEEEEecCCceeeccEEEecCCccccc
Q psy519          260 VYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV--------VVESFIVEIRPDKWYEANLIVLDDDLKECN  326 (351)
Q Consensus       260 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (351)
                      .+..++++|++..+++++.++.   +++|+..+++..        .+.+  +.|+|++.++... ..|..|++|+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~h~~~V~~--~~~s~~~~~l~s~-s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKT---LRVWDYKNKRCMKTLNAHEHFVTS--LDFHKTAPYVVTG-SVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTE---EEEECCTTSCCCEEEECCSSCEEE--EEECSSSSCEEEE-ETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCe---EEEEECCCCcEEEEEcCCCCCEEE--EEEcCCCCEEEEE-eCCCeEEEeC
Confidence            5677999999999999988874   666666555433        3333  6899999877644 5677788875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=251.11  Aligned_cols=239  Identities=17%  Similarity=0.190  Sum_probs=198.9

Q ss_pred             CCC-ccceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCCccceEEEEECCCCcE-EEEe--CC
Q psy519            8 HGD-HKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGHDMTVWSVEACSKGLA-LTGS--RD   70 (351)
Q Consensus         8 ~~~-~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~-~~~~--~d   70 (351)
                      .+| ...|++++|+|+..+.+|++|+.||+|++|++...             ...|.++|.+++|++++++ ++++  .+
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~  138 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  138 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc
Confidence            344 57899999999533789999999999999998754             3457789999999999987 5444  47


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeEEe---ccCCCCeEEEEEccC-C
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY-IGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSPC-G  145 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~-~  145 (351)
                      +.+++|+.++++.+..+.+|...|.+++|+|++.. +++++.|+.+++||....+.....   ..|...|.+++|+|+ +
T Consensus       139 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence            78999999999999999999999999999998764 678999999999999887765554   456788999999996 6


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEEC---CCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS---PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-  221 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  221 (351)
                      .++++++.   |+.|++||+++++.+..+..|..++..+.|+   |++++|++++.|+.|++||+++++.+..+....+ 
T Consensus       219 ~~l~s~~~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         219 EFVITVGS---DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             CEEEEEET---TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred             eecccccc---ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence            88899988   9999999999999999998888777655555   6899999999999999999999999888764433 


Q ss_pred             CCEE--EEEEcCCCCEEEEEeCCCeEEEEeC
Q psy519          222 EPVT--SLVWSVTGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       222 ~~v~--~~~~~~~~~~l~~~~~dg~i~i~~~  250 (351)
                      ..+.  ++.+.+ +.+|++++.||.|++||+
T Consensus       296 ~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         296 LGNQQVGVVATG-NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred             ccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence            2233  444443 347889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=244.11  Aligned_cols=273  Identities=22%  Similarity=0.359  Sum_probs=219.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCC
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE   79 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~   79 (351)
                      .+.+||...|.+ +++++  |++||+|+.||.|++||+.+.     +.+|...|.+++|+++ .+++++.|+.+++|+..
T Consensus        10 ~~l~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             EEEECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETT
T ss_pred             EEECCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccc
Confidence            456799999876 47778  999999999999999999877     7889999999999875 55999999999999987


Q ss_pred             CCeeeEEeeCCCCCeEE--------------------------------------EEEeCCCCEEEEEeCCCcEEEEeCC
Q psy519           80 QMYPLRIFVGHKQDVTC--------------------------------------ARFHPKITYIGTGSYDKAVRLWSIT  121 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i~~--------------------------------------i~~~~~~~~l~~~~~dg~i~i~d~~  121 (351)
                      ..........+...+..                                      ....+....+++++.|+.+++||..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            65443333222221111                                      1222344567788889999999999


Q ss_pred             CCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCe
Q psy519          122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      ..+.+..+.+|...+..+.+  ++.++++++.   |+.|++||++.++.+..+..|...+.++.++  +++|++++.||.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~---dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~  238 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSL---DTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST  238 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEET---TSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             cceeeEEEcCcccccccccC--CCCEEEEEeC---CCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCE
Confidence            88888888888777665554  7889999999   9999999999999999999999999888776  569999999999


Q ss_pred             EEEEEcCCCcEEEEeeccC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----------eecceeEEecC
Q psy519          202 VLTHELTTGRVISRFHLQE--HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----------GVYPRCAAQPV  269 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----------~~~~~~~~s~~  269 (351)
                      |++||+...+....+....  ...+.++.+  +++++++|+.||.|++||+++++.++.          ..+.+++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            9999999988877775333  245666665  567999999999999999999988764          24678999999


Q ss_pred             Cceeeeeeccce-eeEEEeeec
Q psy519          270 GFEAATLAANSR-VRTLREMHE  290 (351)
Q Consensus       270 ~~~~~~~~~~~~-~~~~~~~~~  290 (351)
                      +..++++..+|. ...+++|+.
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeC
Confidence            999999998885 455778774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-35  Score=247.23  Aligned_cols=268  Identities=13%  Similarity=0.124  Sum_probs=210.3

Q ss_pred             cceEEeeecCCccccEEEEecCCC-ceEEEecCCc-------cCCC-ccceEEEEECC--CCcE-EEEeCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQK-NLQSRYLPYY-------TSGH-DMTVWSVEACS--KGLA-LTGSRDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~-~i~i~~~~~~-------~~~~-~~~i~~~~~~~--~~~~-~~~~~d~~i~vw~~~   79 (351)
                      ..+++++|+|+  ++.|++++.+. .|+.|+....       +.+| ...|++++|+|  ++.+ ++|+.||+|++||+.
T Consensus        18 ~~~t~l~~~~~--~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          18 NFTTHLSYDPT--TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             TCCCCCEEETT--TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CCeEEEEECCC--CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            35678999999  99999876543 3556664433       4555 57899999998  4567 899999999999986


Q ss_pred             CCeee--------EEeeCCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCE-E
Q psy519           80 QMYPL--------RIFVGHKQDVTCARFHPKITYIGTGSY--DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY-L  148 (351)
Q Consensus        80 ~~~~~--------~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l  148 (351)
                      .++..        ..+..|..+|.+++|+++++++++++.  ++.+.+|+..+++.+..+.+|...|.+++|+|++++ +
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceE
Confidence            54322        234578889999999999999887764  678999999999999999999999999999998875 6


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEe---ccCCCCEEEEEECCC-CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVF---SDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      ++++.   |+.+++||++..+.....   ..|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+. .|..++
T Consensus       176 ~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v  251 (325)
T d1pgua1         176 MTVGD---DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPV  251 (325)
T ss_dssp             EEEET---TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCC
T ss_pred             EEeec---ccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-cccccc
Confidence            67878   999999999887766554   356778999999996 6899999999999999999999988876 345555


Q ss_pred             EEEEEc---CCCCEEEEEeCCCeEEEEeCCCCceeeeee-------cceeEEecCC-ceeeeeeccceeeEE
Q psy519          225 TSLVWS---VTGETLVTGSLTGTVQFYGWPSASKIGIGV-------YPRCAAQPVG-FEAATLAANSRVRTL  285 (351)
Q Consensus       225 ~~~~~~---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~~~~~~s~~~-~~~~~~~~~~~~~~~  285 (351)
                      ..+.|+   |++++|++++.|+.|+|||+++++.+....       ...+++.+.+ ..+++++.++.++.|
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  323 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence            444444   689999999999999999999998876532       2234454433 356777777754443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8e-35  Score=251.91  Aligned_cols=228  Identities=13%  Similarity=0.065  Sum_probs=193.5

Q ss_pred             ccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCe--eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q psy519           50 DMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMY--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV  126 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  126 (351)
                      .++|+|++|+|+|.+ ++++.|+.|++||+++++  .+..+++|..+|.+++|+|++++|++++.|+.|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            478999999999988 899999999999998765  56778899999999999999999999999999999999876643


Q ss_pred             --EEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCcee----EEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          127 --RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV----RVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       127 --~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                        ..+.+|...|.+++|+|+++.|++++.   |+.+++|++......    .....|...|.+++|+|++++|++++.|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEET---TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccceeecc---cCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence              445678899999999999999999998   999999998776432    33456888999999999999999999999


Q ss_pred             eEEEEEcCCCc------------------EEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----
Q psy519          201 LVLTHELTTGR------------------VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----  258 (351)
Q Consensus       201 ~i~i~d~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----  258 (351)
                      .+++||+....                  .+... ..+...+.+++|+|++++|++++.|+.|++||+.+++.+..    
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence            99999986432                  22222 24557899999999999999999999999999999887754    


Q ss_pred             -eecceeEEecCCceeeeeecccee
Q psy519          259 -GVYPRCAAQPVGFEAATLAANSRV  282 (351)
Q Consensus       259 -~~~~~~~~s~~~~~~~~~~~~~~~  282 (351)
                       .++.+++|+|++..++++. ++..
T Consensus       243 ~~~v~s~~fs~d~~~la~g~-d~~~  266 (371)
T d1k8kc_         243 TLPLLAVTFITESSLVAAGH-DCFP  266 (371)
T ss_dssp             SCCEEEEEEEETTEEEEEET-TSSC
T ss_pred             cccceeeeecCCCCEEEEEc-CCce
Confidence             4667899999998877554 4443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-34  Score=244.00  Aligned_cols=303  Identities=19%  Similarity=0.251  Sum_probs=231.6

Q ss_pred             cCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCC
Q psy519            6 LNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ   80 (351)
Q Consensus         6 ~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~   80 (351)
                      .++||...|.+ +++++  +++||+|+.||+|++||+.+.     +.+|.++|++++|+|++.+++++.|+.|++|+...
T Consensus         7 tL~GH~~~vit-c~~~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2           7 TLRGHMTSVIT-CLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             EEECCSSSCEE-EEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTT
T ss_pred             EECCcCCCcEE-EEEEC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccc
Confidence            45789888743 24456  889999999999999999877     77899999999999988779999999999999999


Q ss_pred             CeeeEEeeCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe-----------------------ccCCCC
Q psy519           81 MYPLRIFVGHKQ--DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF-----------------------SDHVSP  135 (351)
Q Consensus        81 ~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------~~~~~~  135 (351)
                      .+.......+..  ......+.+++..+++++.|+.|++||+++.......                       ..|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d1nexb2          84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  163 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred             cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence            887766654433  3455677889999999999999999999876543221                       112233


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      +  ..+.+++++++++..   |+.+++||+++++.+.....+...+.++.|+|++.++++++.|+.|++||++++..+..
T Consensus       164 v--~~~~~~~~~~~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         164 V--RTVSGHGNIVVSGSY---DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             E--EEEEEETTEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             c--cccccccceeeeecc---cceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccc
Confidence            3  345567899999998   99999999999999999988999999999999999999999999999999999999888


Q ss_pred             eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---eeccee-EEecCCceeeeeeccceeeEEEeeece
Q psy519          216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI---GVYPRC-AAQPVGFEAATLAANSRVRTLREMHEI  291 (351)
Q Consensus       216 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
                      +. .|...|.+++|+  +++|++++.||.|++||++++.....   ..+..+ .+++++..++++ .++   .+++|+..
T Consensus       239 ~~-~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~---~i~vwd~~  311 (355)
T d1nexb2         239 LQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SEN---QFNIYNLR  311 (355)
T ss_dssp             EC-CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETT---EEEEEETT
T ss_pred             cc-cccccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCC---EEEEEECC
Confidence            76 567889999986  47999999999999999998876543   233333 556676665544 454   67888876


Q ss_pred             eCceE---------EEeeEEEEecCCceeeccEEEecCCccccce
Q psy519          292 VGPVV---------VVESFIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       292 ~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                      +|+..         .+.+  +.|+|+..  ......+..+.+|.+
T Consensus       312 tg~~~~~~~~~~~~~V~~--v~~~~~~~--~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         312 SGKLVHANILKDADQIWS--VNFKGKTL--VAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEE--EEEETTEE--EEEEESSSCEEEEEE
T ss_pred             CCCEEEEEecCCCCCEEE--EEEcCCeE--EEEEECCCcEEEEEE
Confidence            66533         2333  56777642  222235555555543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.6e-34  Score=237.52  Aligned_cols=269  Identities=17%  Similarity=0.154  Sum_probs=209.6

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG  123 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  123 (351)
                      +.+|...|++++|+|++++ ++|+.|++|++||+++++....+. .|...|++++|+|++.++ +++.|+.+++|+....
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~   86 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGS   86 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCc
Confidence            5799999999999999988 999999999999999999888774 688999999999998755 5667999999998654


Q ss_pred             ce---eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          124 AS---VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       124 ~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      ..   ......+...+.+++|+|++++++++.    ++.+.+|+..  +.....  ....+.+++|+|+++++++++.||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~----~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccc----cccccccccc--cccccc--cccccccccccccccccccccccc
Confidence            32   122234677889999999999888775    7899999953  223322  345678999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--------eeecceeEEecCCce
Q psy519          201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG--------IGVYPRCAAQPVGFE  272 (351)
Q Consensus       201 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--------~~~~~~~~~s~~~~~  272 (351)
                      .+++||+++++........|...|.+++|+|++++|++++.|+.|++||+.++....        ...+..++|+|++..
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999988876655555677899999999999999999999999999998776543        245678899999999


Q ss_pred             eeeeeccceeeEEEeeeceeCceEEEe--------eEEEEecCCceeeccEEEecCCccccce
Q psy519          273 AATLAANSRVRTLREMHEIVGPVVVVE--------SFIVEIRPDKWYEANLIVLDDDLKECNL  327 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (351)
                      +++++.++   .+++|+..++......        .....+.+++.+.... ..|..++.|++
T Consensus       239 l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~-s~D~~i~iWdl  297 (299)
T d1nr0a2         239 LATGSLDN---SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA-GQDSNIKFWNV  297 (299)
T ss_dssp             EEEEETTS---CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEE-ETTSCEEEEEC
T ss_pred             eEEEcCCC---EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEE-eCCCEEEEEec
Confidence            99998887   4666766554321111        0112234445444433 46788999987

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-33  Score=236.16  Aligned_cols=237  Identities=21%  Similarity=0.330  Sum_probs=215.1

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc---------cCCCccceEEEEECCCCcEEEEeCCCcEEEEe
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLALTGSRDTTARLWS   77 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~   77 (351)
                      ...|..+|.+++|+|+  +.++++++.|+.+.+|+....         ..+|...........+..+.....+.....+.
T Consensus        93 ~~~~~~~v~~v~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_          93 IPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             EECSCSCEEEEEECTT--SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred             EecccccEEeeEeecc--ceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccc
Confidence            3568899999999999  999999999999999998766         45677777777776666778899999999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      ............+...+....+.+.+.++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.   |
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~---d  247 (340)
T d1tbga_         171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---D  247 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---T
T ss_pred             cccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC---C
Confidence            9888887778888889999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             CeEEEEEccCCceeEEec--cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCE
Q psy519          158 KAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGET  235 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  235 (351)
                      +.|++||++.......+.  .+...+.+++|+|++++|++|+.||.|++||+.+++.+..+. .|..+|.+++|+|++++
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCE
Confidence            999999999888776653  566789999999999999999999999999999999998886 56789999999999999


Q ss_pred             EEEEeCCCeEEEEe
Q psy519          236 LVTGSLTGTVQFYG  249 (351)
Q Consensus       236 l~~~~~dg~i~i~~  249 (351)
                      |++|+.||.|++||
T Consensus       327 l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         327 VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEccCCEEEEeC
Confidence            99999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-33  Score=232.19  Aligned_cols=261  Identities=15%  Similarity=0.138  Sum_probs=211.2

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCccCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      +...||..+|++++|+|      |++|+.||+|++|++.+...+|...|.++++++++.+++++.|+++++|++...+  
T Consensus         7 ~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~--   78 (287)
T d1pgua2           7 KTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE--   78 (287)
T ss_dssp             EEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE--
T ss_pred             EEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccc--
Confidence            45689999999999985      8999999999999998888899999999999998888999999999999975432  


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC-CeEEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD-KAVRLW  163 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d-~~i~i~  163 (351)
                           ....+..+.+++++..++++ .++.+.+|+..+++.+..+..+ ..+  .+++++++.+++++.   + +.+++|
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~---~~~~v~~~  146 (287)
T d1pgua2          79 -----FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLE---EGNTIQVF  146 (287)
T ss_dssp             -----CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEET---TTSCEEEE
T ss_pred             -----cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeecc---ccceeeee
Confidence                 23457788899888777665 4677899999999888877643 443  456778888888876   5 579999


Q ss_pred             EccCCceeEEec-cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCC----------
Q psy519          164 SITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT----------  232 (351)
Q Consensus       164 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----------  232 (351)
                      ++...+....+. .+..++.+++|+|++.+|++++.||.|++||+.+++........|...|.+++|+|.          
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence            987766555543 477889999999999999999999999999999888766544466788999999874          


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-eeee-----eecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          233 GETLVTGSLTGTVQFYGWPSAS-KIGI-----GVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~-~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +.+|++|+.|+.|++||++.+. .+..     ..+..++|+|++. +++++.|+.   +++|+
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~---v~iW~  285 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADAC---IKRWN  285 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSC---EEEEE
T ss_pred             CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCe---EEEEE
Confidence            4689999999999999997743 3332     4678899999875 677777765   55554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-33  Score=236.85  Aligned_cols=279  Identities=11%  Similarity=0.045  Sum_probs=215.6

Q ss_pred             CCCCCcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc--------cCCCccceEEEEECCCC-cE-EEEeCC
Q psy519            1 MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKG-LA-LTGSRD   70 (351)
Q Consensus         1 ~~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~-~~-~~~~~d   70 (351)
                      |.+.++..+|...|++|+|+|+  +++||+++.||+|++||+...        ..+|..+|.+++|+|++ .+ ++|+.|
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CCeEEcCCCCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            5677889999999999999999  999999999999999998654        34699999999999875 44 899999


Q ss_pred             CcEEEEeCCCCeeeEEeeCCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE----ecc--CCCCeEEEEEcc
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV----FSD--HVSPVLSIAFSP  143 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~--~~~~i~~~~~~~  143 (351)
                      +.|++|++...........+.. ......+.++...+++++.++.+++||++.+.....    ...  .......+.+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            9999999998777666654443 344555667888999999999999999875443222    221  223445667788


Q ss_pred             CCCEEEEEecCCCCCeEEEEEccCCcee---EEeccCCCCEEEEEECC-CCcEEEEEcCCCeEEEEEcCCCcEE------
Q psy519          144 CGKYLASGGTGSYDKAVRLWSITDGASV---RVFSDHVSPVLSIAFSP-CGKYLASGGEDGLVLTHELTTGRVI------  213 (351)
Q Consensus       144 ~~~~l~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~------  213 (351)
                      .++.+++++.   |+.|++||++..+..   .....+........+.+ ++..+++++.||.+.+|+.......      
T Consensus       159 ~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         159 NSSRLIVGMN---NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSEEEEEES---TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cCCceeeecC---CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            8999999998   999999999876432   22334445566666655 6788999999999999997643211      


Q ss_pred             EEe--------eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccce
Q psy519          214 SRF--------HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSR  281 (351)
Q Consensus       214 ~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~  281 (351)
                      ..+        ...+...+.+++|+|++++|++|+.||.|++||+++++.+..    .....++++|++..++++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCc
Confidence            111        012335789999999999999999999999999999988764    33456899999999999888875


Q ss_pred             eeE
Q psy519          282 VRT  284 (351)
Q Consensus       282 ~~~  284 (351)
                      .+.
T Consensus       316 ~~~  318 (342)
T d1yfqa_         316 FKT  318 (342)
T ss_dssp             HHH
T ss_pred             EEE
Confidence            443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=238.28  Aligned_cols=264  Identities=16%  Similarity=0.130  Sum_probs=200.0

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----------cCCCccceEEE------EECCC-CcE-E
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----------TSGHDMTVWSV------EACSK-GLA-L   65 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----------~~~~~~~i~~~------~~~~~-~~~-~   65 (351)
                      ...++|...|.+++++    +++|++++.|++|++|+....           ...|...+..+      ..... +.+ +
T Consensus         8 ~~~~~H~~~I~~v~~~----~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEEC----SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEe----CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4568999999999986    558999999999999997653           11233322222      22221 233 7


Q ss_pred             EEeCCCcEEEEeCCCCeeeEEe----------eCCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCce-----
Q psy519           66 TGSRDTTARLWSLEQMYPLRIF----------VGHKQDVTCARFHPK-----ITYIGTGSYDKAVRLWSITDGAS-----  125 (351)
Q Consensus        66 ~~~~d~~i~vw~~~~~~~~~~~----------~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~-----  125 (351)
                      +++.||.|++|++........+          ..+...+..++|.++     +.++++++.||.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            8999999999997543221111          124456778888775     46789999999999999753210     


Q ss_pred             -------------eEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe------ccCCCCEEEEEE
Q psy519          126 -------------VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF------SDHVSPVLSIAF  186 (351)
Q Consensus       126 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~  186 (351)
                                   ......+...+.+++|+|++ +|++|+.   |+.|++||+++++.+..+      .+|..+|.+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~---Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC---CCcEEEEeecccccccccccccccccccceEEEccc
Confidence                         11112345668899999987 8889988   999999999998876654      458899999999


Q ss_pred             CCCCcEEEEEcCCC---eEEEEEcCCCcEEEEeec------------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          187 SPCGKYLASGGEDG---LVLTHELTTGRVISRFHL------------QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       187 ~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      +|++++|++|+.|+   .|++||+++++.+..+..            .|...|++++|+|++++|++++.|++|++||++
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            99999999999886   599999999988877642            466789999999999999999999999999999


Q ss_pred             CCceeeeeec---------ceeEEecCCceeeee
Q psy519          252 SASKIGIGVY---------PRCAAQPVGFEAATL  276 (351)
Q Consensus       252 ~~~~~~~~~~---------~~~~~s~~~~~~~~~  276 (351)
                      +++.+.....         ..++++|++..++.+
T Consensus       320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9998876432         247889998876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-31  Score=225.27  Aligned_cols=267  Identities=17%  Similarity=0.263  Sum_probs=211.4

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSL   78 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~   78 (351)
                      ..+|..+|.+++|+|+  + +|++++.|+.|++|+....       ...+........+.+++.+ ++++.|+.|++|++
T Consensus        49 l~~H~~~V~~l~~s~~--~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~  125 (355)
T d1nexb2          49 LSGHDGGVWALKYAHG--G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  125 (355)
T ss_dssp             EECCSSCEEEEEEETT--T-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEEC
T ss_pred             EECCCCCEEEEEEcCC--C-EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEc
Confidence            4679999999999987  4 7899999999999999887       3344455666778888877 89999999999999


Q ss_pred             CCCeeeEE-----------------------eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCC
Q psy519           79 EQMYPLRI-----------------------FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP  135 (351)
Q Consensus        79 ~~~~~~~~-----------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  135 (351)
                      .+......                       ...|...+.  .+.++++.++++..|+.+++||+++++.+.....+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  203 (355)
T d1nexb2         126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  203 (355)
T ss_dssp             CC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             cCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccc
Confidence            76543321                       122333333  34556889999999999999999999999999889999


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      +.++.++|+++++++++.   |+.|++||++++..+..+..|...|.+++++  +++|++++.||.|++||+++......
T Consensus       204 ~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         204 IYSTIYDHERKRCISASM---DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             EEEEEEETTTTEEEEEET---TSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccceeeecccc---cceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceecc
Confidence            999999999999999998   9999999999999999999999999999986  57999999999999999998876554


Q ss_pred             eeccCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------eecceeEEecCCceeeeeeccceeeEEEee
Q psy519          216 FHLQEHEPVTS-LVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRTLREM  288 (351)
Q Consensus       216 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  288 (351)
                      .   +...+.. ..++++++++++|+ ||.|++||+++++.+..      ..+.+++|+|+ ..+++++.+|.+. +.+|
T Consensus       279 ~---~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~-l~~~  352 (355)
T d1nexb2         279 Y---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF-LEIL  352 (355)
T ss_dssp             E---ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEE-EEEE
T ss_pred             c---ccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEE-EEEE
Confidence            3   2333443 45677888777765 89999999999987742      56778899986 3566666677553 3444


Q ss_pred             e
Q psy519          289 H  289 (351)
Q Consensus       289 ~  289 (351)
                      +
T Consensus       353 d  353 (355)
T d1nexb2         353 D  353 (355)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.6e-29  Score=205.02  Aligned_cols=260  Identities=17%  Similarity=0.300  Sum_probs=205.2

Q ss_pred             CCCCccceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         7 ~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      ...|...|+|++  ++  +++||+|+.||+|++||+.+.     +.+|...|++++|+  +++ ++|+.|+.|++|++..
T Consensus        11 ~~~~~~~V~c~~--~d--~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          11 RSETSKGVYCLQ--YD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCSSCCCEEEEE--CC--SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SSEEEEEETTSCEEEEESSS
T ss_pred             cCCCCCCEEEEE--Ec--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--cceeeccccccccccccccc
Confidence            456788899865  47  899999999999999999877     77899999999984  455 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce---eEEeccCCCCeEEEEEccCCCEEEEEecCCCC
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD  157 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d  157 (351)
                      +........+....  ..+.+....++++..++.+.+|+......   ...+..|...+..+.+.  ...+++++.   |
T Consensus        85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~---d  157 (293)
T d1p22a2          85 GEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG---D  157 (293)
T ss_dssp             CCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEET---T
T ss_pred             cccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccC---C
Confidence            88777665554443  34555667889999999999999987653   34456678888877775  456777777   9


Q ss_pred             CeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       158 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                      +.+++||+++++.+..+..+...+..+.++  +.++++++.||.|++||+++.+.+..+. .+...+..  +++++.+|+
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE--EECCSSEEE
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec-ccceeeee--ccccceEEE
Confidence            999999999999999999998888888775  5789999999999999999999888764 34455554  567889999


Q ss_pred             EEeCCCeEEEEeCCCCc---------eee-----eeecceeEEecCCceeeeeeccceeeEEEeee
Q psy519          238 TGSLTGTVQFYGWPSAS---------KIG-----IGVYPRCAAQPVGFEAATLAANSRVRTLREMH  289 (351)
Q Consensus       238 ~~~~dg~i~i~~~~~~~---------~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      +|+.||.|++||+....         .+.     ...+.+++|  ++..+++++.|+   .+++||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg---~i~iWD  293 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD---TILIWD  293 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS---EEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC---EEEEeC
Confidence            99999999999975422         222     234556666  567787777665   566664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-28  Score=209.43  Aligned_cols=252  Identities=22%  Similarity=0.290  Sum_probs=194.5

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      +.+|.+.|.+ +++++|++ ++|+.|++|+|||+++++++..+.+|...|.+++|+|+  +|++++.|+.+++|+.....
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~   88 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGE   88 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTE
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccccc
Confidence            6789998864 34556776 99999999999999999999999999999999999975  89999999999999987655


Q ss_pred             eeEEeccCCCCeE--------------------------------------EEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519          125 SVRVFSDHVSPVL--------------------------------------SIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus       125 ~~~~~~~~~~~i~--------------------------------------~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .......+...+.                                      .....+....+++++.   |+.+++||.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~d~~  165 (342)
T d2ovrb2          89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY---DFMVKVWDPE  165 (342)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET---TSCEEEEEGG
T ss_pred             ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC---CCeEEEeecc
Confidence            4333222211111                                      1222334556777777   9999999999


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ  246 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  246 (351)
                      ..+.+..+..|...+..+.+  ++.++++++.||.|++||++.++.+..+. .+...+.++.++  +++|++++.||.|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~s~d~~i~  240 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELK--DNILVSGNADSTVK  240 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecC--CCEEEEEcCCCEEE
Confidence            99888888888877665554  68899999999999999999999888775 566778887775  56999999999999


Q ss_pred             EEeCCCCceeeee------ecceeEEecCCceeeeeeccceeeEEEeeeceeCceEE-------------EeeEEEEecC
Q psy519          247 FYGWPSASKIGIG------VYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVV-------------VESFIVEIRP  307 (351)
Q Consensus       247 i~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~  307 (351)
                      +||+...+.....      ......+++++..+++++.++   .+++|+..+|+...             +.+  +.|+|
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg---~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~--v~~s~  315 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG---TVKLWDLKTGEFIRNLVTLESGGSGGVVWR--IRASN  315 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS---EEEEEETTTCCEEEEEEECTTGGGTCEEEE--EEECS
T ss_pred             EEecccccccccccccceeeeceeecccCCCeeEEEcCCC---EEEEEECCCCCEEEEEecccCCCCCCCEEE--EEECC
Confidence            9999988766542      223355667778888888776   67788887776543             223  67889


Q ss_pred             Cceeec
Q psy519          308 DKWYEA  313 (351)
Q Consensus       308 ~~~~~~  313 (351)
                      ++.+..
T Consensus       316 ~~~~la  321 (342)
T d2ovrb2         316 TKLVCA  321 (342)
T ss_dssp             SEEEEE
T ss_pred             CCCEEE
Confidence            887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=7.7e-30  Score=218.69  Aligned_cols=315  Identities=10%  Similarity=-0.008  Sum_probs=228.5

Q ss_pred             EEeeecC-CccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCC--CcEEEEeCCCCeeeEEe
Q psy519           15 IQNSFKP-ETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRD--TTARLWSLEQMYPLRIF   87 (351)
Q Consensus        15 ~~~~~sp-~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d--~~i~vw~~~~~~~~~~~   87 (351)
                      ..-.||| |  |+++|+++ .|.|++|++..+   ...|...|.+++|+|||++ ++++.+  ..|++||.++++.. .+
T Consensus         6 ~~~~fSP~d--G~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3           6 FAEDFSPLD--GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             GEEEEEECG--GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             hcccccCCC--CCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee
Confidence            4568999 8  99999885 579999999887   4579999999999999987 555544  37999999987654 56


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEec-------CCCCCeE
Q psy519           88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT-------GSYDKAV  160 (351)
Q Consensus        88 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~d~~i  160 (351)
                      ..|...+.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+..       +..++.+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            689999999999999999999999999999999999998888889999999999999999987642       1225679


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEE-------EEeeccCCCCEEEEEEcCCC
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI-------SRFHLQEHEPVTSLVWSVTG  233 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~v~~~~~~~~~  233 (351)
                      ++||+.+++... +..+...+..++|+|||++|++++.++.+.+||.......       ..+. .+...+..+.|++++
T Consensus       162 ~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         162 HVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP-LIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEE-SSTTCCCGGGCCCGG
T ss_pred             eeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEe-cccCccccceECCCc
Confidence            999998776544 4456778899999999999999999999999997654322       2221 122334455667777


Q ss_pred             CEEEEEeCCC-----eEEEEeCCCCceeeee----ecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee--EE
Q psy519          234 ETLVTGSLTG-----TVQFYGWPSASKIGIG----VYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES--FI  302 (351)
Q Consensus       234 ~~l~~~~~dg-----~i~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~  302 (351)
                      ..++++..+.     .+..++...+......    ....+.+.+.+.........+....+++|+..+++......  ..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~  319 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD  319 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEE
T ss_pred             CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCE
Confidence            6665554432     2444555554433221    11223333333333333344445678888877766443322  12


Q ss_pred             EEecCCceeeccEEEecCCccccceeeeeeeeec
Q psy519          303 VEIRPDKWYEANLIVLDDDLKECNLETYSQMIPV  336 (351)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  336 (351)
                      +.|+||+.++... ..+..++.|+++...+...+
T Consensus       320 ~~~SpDG~~l~~~-~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         320 LRLSADRKTVMVR-KDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEECTTSCEEEEE-ETTSCEEEEESSCTTSCEEC
T ss_pred             EEECCCCCEEEEE-ECCCeEEEEECCCCCcceEE
Confidence            6899999887544 56888999999887665444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9e-29  Score=205.77  Aligned_cols=234  Identities=12%  Similarity=0.154  Sum_probs=190.3

Q ss_pred             CcCCCCccceEEeeecCCccccEEEEecCCCceEEEecCCccCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeee
Q psy519            5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus         5 ~~~~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~   84 (351)
                      ....+|...|.+++++++  + .+++++.|+++++|+....  .....+..+.+.+++.++..+.++.+.+|+..+++.+
T Consensus        40 ~~~~~h~~~V~~~~~~~~--~-~~~s~s~D~~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (287)
T d1pgua2          40 SMHQDHSNLIVSLDNSKA--Q-EYSSISWDDTLKVNGITKH--EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII  114 (287)
T ss_dssp             EEECCCCSCEEEEECCST--T-CCEEEETTTEEEETTEEEE--ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCCCCCEEEEEecCC--C-eEEEEeecccccccccccc--ccccceeeeeeccCCceEEEeecccceeeeccceeee
Confidence            345789999999999977  5 5788889999999998754  2344677889999998877788889999999999888


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDK-AVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ..+..+ ..+  .+++++++.+++++.++ .+++|++...+....+. .+..++.+++|+|++.+|++++.   |+.|++
T Consensus       115 ~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i  188 (287)
T d1pgua2         115 KSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV---MGKILL  188 (287)
T ss_dssp             EEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET---TSCEEE
T ss_pred             eecccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc---cccccc
Confidence            777543 333  45667778888877765 79999998766555543 46788999999999999999999   999999


Q ss_pred             EEccCCceeE-EeccCCCCEEEEEECCC----------CcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          163 WSITDGASVR-VFSDHVSPVLSIAFSPC----------GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       163 ~d~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      ||+.+++... .+..|..+|.+++|+|+          +.++++|+.|+.|++||++++.........|...|.+++|+|
T Consensus       189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred             eeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC
Confidence            9999887654 35678999999999874          468999999999999999875544444446778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q psy519          232 TGETLVTGSLTGTVQFYGW  250 (351)
Q Consensus       232 ~~~~l~~~~~dg~i~i~~~  250 (351)
                      ++ .|++++.|+.|++|++
T Consensus       269 ~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT-EEEEEETTSCEEEEEE
T ss_pred             CC-EEEEEECCCeEEEEEE
Confidence            86 5888999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-28  Score=211.96  Aligned_cols=211  Identities=18%  Similarity=0.256  Sum_probs=170.0

Q ss_pred             ccEEEEecCCCceEEEecCCc---------------cCCCccceEEEEECCCC-----cE-EEEeCCCcEEEEeCCCCe-
Q psy519           25 EDVLANLESQKNLQSRYLPYY---------------TSGHDMTVWSVEACSKG-----LA-LTGSRDTTARLWSLEQMY-   82 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~---------------~~~~~~~i~~~~~~~~~-----~~-~~~~~d~~i~vw~~~~~~-   82 (351)
                      +.++++++.||.|++|++...               ...+...++.++|.+++     .+ ++++.|+++++|++.... 
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            457788999999999997654               23355667888887753     34 889999999999974211 


Q ss_pred             -----------------eeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe------ccCCCCeEEE
Q psy519           83 -----------------PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF------SDHVSPVLSI  139 (351)
Q Consensus        83 -----------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~  139 (351)
                                       .......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+      .+|..+|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                             111112345668899999987 8899999999999999998876544      4588999999


Q ss_pred             EEccCCCEEEEEecCCCCC---eEEEEEccCCceeEEec-------------cCCCCEEEEEECCCCcEEEEEcCCCeEE
Q psy519          140 AFSPCGKYLASGGTGSYDK---AVRLWSITDGASVRVFS-------------DHVSPVLSIAFSPCGKYLASGGEDGLVL  203 (351)
Q Consensus       140 ~~~~~~~~l~~~~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~  203 (351)
                      +|+|+|++|++|+.   |+   .|++||+++++.+..+.             +|...|++++|+|++++|++++.|+.|+
T Consensus       238 ~~spdg~~l~sgs~---D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         238 KFSPQGSLLAIAHD---SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EECSSTTEEEEEEE---ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ccccccceeeeecC---CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            99999999999988   65   59999999998877764             6899999999999999999999999999


Q ss_pred             EEEcCCCcEEEEeeccCCCCEE----EEEEcCCCCEEEEEe
Q psy519          204 THELTTGRVISRFHLQEHEPVT----SLVWSVTGETLVTGS  240 (351)
Q Consensus       204 i~d~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~  240 (351)
                      +||+++++++..+. .|...|.    .++|+|++..+++++
T Consensus       315 vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         315 FWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEECCCCCEEEEEC-CcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999999886 4555554    578999998876553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.5e-29  Score=216.86  Aligned_cols=276  Identities=9%  Similarity=-0.077  Sum_probs=213.5

Q ss_pred             CCCccceEEeeecCCccccEEEEecCC--CceEEEecCCc----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCC
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQ--KNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQ   80 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~--~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~   80 (351)
                      .+|...|.+++||||  |++|++++.+  ..|++|+....    ...|...|.+++|+|+|++ ++++.++.+++|++.+
T Consensus        39 ~~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          39 VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccc
Confidence            468899999999999  9999876654  37999999887    7789999999999999988 9999999999999999


Q ss_pred             CeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEE
Q psy519           81 MYPLRIFVGHKQDVTCARFHPKITYIGTGS----------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  150 (351)
                      ++....+..|...+.+++|+|+|++|+.+.          .++.+++||+.+++..... .+...+..++|+|+|+.|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEE
T ss_pred             cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEE
Confidence            999989999999999999999999998653          3457999999987665444 46788899999999999999


Q ss_pred             EecCCCCCeEEEEEccCCc-------eeEEeccCCCCEEEEEECCCCcEEEEEcCCC-----eEEEEEcCCCcEEEEeec
Q psy519          151 GGTGSYDKAVRLWSITDGA-------SVRVFSDHVSPVLSIAFSPCGKYLASGGEDG-----LVLTHELTTGRVISRFHL  218 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~  218 (351)
                      ++.   ++.+.+||.....       ....+..+...+..+.|+|++..++.+..+.     .+..++...+.... +. 
T Consensus       196 ~s~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  270 (360)
T d1k32a3         196 LSY---RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM-II-  270 (360)
T ss_dssp             EES---CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE-EE-
T ss_pred             EeC---CCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE-ee-
Confidence            988   9999999976543       2233334555555667777777666554332     24444444444332 22 


Q ss_pred             cCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceee-eeecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          219 QEHEPVTSLVWSVTG---ETLVTGSLTGTVQFYGWPSASKIG-IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       219 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      .+...+..+.+.+.+   .++++++.++.+++||+.+++... ...+..++|||||+.++++..++   .+++|+...|+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg---~i~v~d~~~~~  347 (360)
T d1k32a3         271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG---KIYTFPLEKPE  347 (360)
T ss_dssp             ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTS---CEEEEESSCTT
T ss_pred             ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCC---eEEEEECCCCC
Confidence            233445555555544   367788889999999999887654 36778899999999999998887   67788877776

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-25  Score=185.34  Aligned_cols=226  Identities=19%  Similarity=0.352  Sum_probs=182.1

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA  124 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  124 (351)
                      ...|...|+|++|  ++++ ++|+.||+|+|||+++++++..+.+|...|.+++|  ++++|++++.|+.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            3567888999876  5666 99999999999999999999999999999999877  57899999999999999999988


Q ss_pred             eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce---eEEeccCCCCEEEEEECCCCcEEEEEcCCCe
Q psy519          125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSDHVSPVLSIAFSPCGKYLASGGEDGL  201 (351)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  201 (351)
                      ............  ..+.+....++++..   ++.+.+||......   ...+..|...+..+.+.  ...+++++.|+.
T Consensus        87 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~  159 (293)
T d1p22a2          87 MLNTLIHHCEAV--LHLRFNNGMMVTCSK---DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT  159 (293)
T ss_dssp             EEEEECCCCSCE--EEEECCTTEEEEEET---TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             cccccccccccc--ccccccccceeeccc---ccceeEeeccccccccccccccccccccccceec--ccccccccCCCc
Confidence            777766544433  344556678888888   99999999987643   34456778888877775  457888899999


Q ss_pred             EEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---ceeEEecCCceeeeeec
Q psy519          202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY---PRCAAQPVGFEAATLAA  278 (351)
Q Consensus       202 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~  278 (351)
                      +++||+++++.+..+. .+...+..+.++  +.++++++.||.|++||+++.+.+.....   ....+++++..+++++.
T Consensus       160 i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~  236 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY  236 (293)
T ss_dssp             EEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred             eeeecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcC
Confidence            9999999999888875 455677777765  57899999999999999999888765332   23467888889999988


Q ss_pred             cceeeEE
Q psy519          279 NSRVRTL  285 (351)
Q Consensus       279 ~~~~~~~  285 (351)
                      ++.++.|
T Consensus       237 dg~i~iw  243 (293)
T d1p22a2         237 DGKIKVW  243 (293)
T ss_dssp             TSCEEEE
T ss_pred             CCEEEEE
Confidence            8865443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.2e-27  Score=199.82  Aligned_cols=275  Identities=9%  Similarity=-0.018  Sum_probs=199.4

Q ss_pred             cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee---EEeeCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeC
Q psy519           46 TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL---RIFVGHKQDVTCARFHPK-ITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~  120 (351)
                      .++|.+.|++++|+|++.+ ++|+.|++|+|||++++...   ....+|..+|.+++|+|+ +.+|++|+.||.|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            4689999999999999988 99999999999999765432   233469999999999986 458999999999999999


Q ss_pred             CCCceeEEeccCC-CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE----ecc--CCCCEEEEEECCCCcEE
Q psy519          121 TDGASVRVFSDHV-SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV----FSD--HVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       121 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~----~~~--~~~~i~~~~~~~~~~~l  193 (351)
                      ...........+. .......+.+++..+++++.   ++.+++||++.+.....    ...  .......+.+.+++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             cccccccccccccccccccccccccccccccccc---ccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9887776665443 34455566778889999988   99999999976533222    222  12234456777788999


Q ss_pred             EEEcCCCeEEEEEcCCCcEEEEe--eccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceee-------------
Q psy519          194 ASGGEDGLVLTHELTTGRVISRF--HLQEHEPVTSLVWSV-TGETLVTGSLTGTVQFYGWPSASKIG-------------  257 (351)
Q Consensus       194 ~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~-------------  257 (351)
                      ++++.|+.|++||++..+.....  ............+.+ ++..+++++.||.+.+|++.......             
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence            99999999999999876543222  223334555555554 67899999999999999986543221             


Q ss_pred             -------eeecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee-----EEEEecCCceeeccEEEecCCcccc
Q psy519          258 -------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES-----FIVEIRPDKWYEANLIVLDDDLKEC  325 (351)
Q Consensus       258 -------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~  325 (351)
                             ...+..++|+|++..+++++.|+   .+++|+..+++......     ....|+|++.++... ..++.++.|
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg---~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a-~sdd~~~~~  319 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA-TSDDTFKTN  319 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE-EECTHHHHC
T ss_pred             ccCCCcccccceeEEecCCccEEEEECCCC---EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEE-EcCCcEEEe
Confidence                   12445789999999999999887   56677766655432211     125788888776544 456666666


Q ss_pred             ce
Q psy519          326 NL  327 (351)
Q Consensus       326 ~~  327 (351)
                      ..
T Consensus       320 ~~  321 (342)
T d1yfqa_         320 AA  321 (342)
T ss_dssp             SS
T ss_pred             ee
Confidence            44

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=9.7e-26  Score=198.01  Aligned_cols=292  Identities=10%  Similarity=-0.017  Sum_probs=188.1

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEE--e-
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRI--F-   87 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~--~-   87 (351)
                      ..++++..+-++++.+.||.|++||+.+.     +..| ..+..++|+|||++ ++++.|+++++||+.+++....  + 
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            34555522446678889999999999987     4444 46899999999998 8899999999999998875432  2 


Q ss_pred             --eCCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeEEeccCC-----------CCeEEEEEccCCCEEEEEec
Q psy519           88 --VGHKQDVTCARFHPKITYIGTG-SYDKAVRLWSITDGASVRVFSDHV-----------SPVLSIAFSPCGKYLASGGT  153 (351)
Q Consensus        88 --~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~  153 (351)
                        .+|...+.+++|+|||++++++ ..++.+.+||..+++....+..+.           .....+..++++..++....
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence              2445556667778899987554 578999999999988777665433           34455677777777666554


Q ss_pred             CCCCCeEEEEEccCCceeE-EeccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeec-------------
Q psy519          154 GSYDKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGRVISRFHL-------------  218 (351)
Q Consensus       154 ~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-------------  218 (351)
                      +  .+.+.+++......+. ....+...+..+.|+|++++++++. .+..+.+++..+++.......             
T Consensus       183 ~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T d1hzua2         183 E--TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV  260 (426)
T ss_dssp             T--TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred             C--CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence            2  4566677666554322 2335677889999999999877765 455677887776655443321             


Q ss_pred             ----------------------------------------cCCCCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCC
Q psy519          219 ----------------------------------------QEHEPVTSLVWSVTGETLVT-------GSLTGTVQFYGWP  251 (351)
Q Consensus       219 ----------------------------------------~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~i~~~~  251 (351)
                                                              .|...+..++|+|++++|++       ++.+++|++||+.
T Consensus       261 ~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence                                                    12233556667777776663       3345667777766


Q ss_pred             CCceeee--------------eecceeEEecCCceeeeee--ccceeeEEEeeeceeCceEEEeeEEEEecCCcee
Q psy519          252 SASKIGI--------------GVYPRCAAQPVGFEAATLA--ANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWY  311 (351)
Q Consensus       252 ~~~~~~~--------------~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  311 (351)
                      +++....              ..+.+++|||||+.+.+..  .++....+++|+..+++...+......++|+|.|
T Consensus       341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk~  416 (426)
T d1hzua2         341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF  416 (426)
T ss_dssp             CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred             CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCCceE
Confidence            6554322              1234456677776553322  2334555666666666544332211234555555

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=5.3e-23  Score=171.26  Aligned_cols=260  Identities=13%  Similarity=0.077  Sum_probs=201.9

Q ss_pred             EEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC
Q psy519           28 LANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP  101 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~  101 (351)
                      .++++.+++|.+||+.+.    .......+..++|+|+|++  ++++.++.|++||+.+++.+..+..+. .+..++|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            346678899999999887    1223355789999999975  567789999999999999999887765 468899999


Q ss_pred             CCCEEEE-EeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCC
Q psy519          102 KITYIGT-GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP  180 (351)
Q Consensus       102 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  180 (351)
                      ++..+++ +..++.+.+|+..+++....+.. .....+++++|+++.++.+...  ++.+.+|+..+.+....+..+ ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~  159 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG--DKTVSVINTVTKAVINTVSVG-RS  159 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECC-SS
T ss_pred             ccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeecc--ccceeeeeccccceeeecccC-CC
Confidence            9986654 55678899999999988888764 4567889999999988765432  788999999999888877654 45


Q ss_pred             EEEEEECCCCcEEEEEcCC-CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcee
Q psy519          181 VLSIAFSPCGKYLASGGED-GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL---TGTVQFYGWPSASKI  256 (351)
Q Consensus       181 i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~  256 (351)
                      +..+.++|+++.+++++.+ +.+.+|+....+......  ....+..++|+++++.++++..   ++.|++||+.+++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             ceEEEeeccccceeeecccccccccccccceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            7889999999888777654 667788877766665553  4456889999999998876543   478999999999877


Q ss_pred             ee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          257 GI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       257 ~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      ..    ..+..++|+|+|+.+.+....  ...+++|+..+++..
T Consensus       238 ~~~~~~~~~~~va~spdg~~l~va~~~--~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         238 ARIPVGPDPAGIAVTPDGKKVYVALSF--CNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCEEEEEECC--CCeEEEEECCCCeEE
Confidence            65    244579999999987544332  236788998888744

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.5e-25  Score=192.21  Aligned_cols=300  Identities=9%  Similarity=-0.032  Sum_probs=197.4

Q ss_pred             ccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee--EEe---eCCCCC
Q psy519           25 EDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL--RIF---VGHKQD   93 (351)
Q Consensus        25 ~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~--~~~---~~~~~~   93 (351)
                      .-++++.+.+|.|.+||..+.     +..+ ..+..++|+|||++ ++++.|+.+++||+.+++..  ..+   ..|...
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            445688899999999999987     4344 46999999999998 88899999999999877632  232   234445


Q ss_pred             eEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEecc-----------CCCCeEEEEEccCCCEEEEEecCCCCCeEE
Q psy519           94 VTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSD-----------HVSPVLSIAFSPCGKYLASGGTGSYDKAVR  161 (351)
Q Consensus        94 i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~  161 (351)
                      +.+..|+|||++| ++++.++.+++||..+++.+..+..           +......+.++|++..++.+...  ++.|.
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--~~~i~  188 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKIL  188 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--CCeEE
Confidence            5556678899976 6777899999999999988776643           33556778999999887655431  78999


Q ss_pred             EEEccCCceeEEec-cCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEEEEeecc----CCCC------------
Q psy519          162 LWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVISRFHLQ----EHEP------------  223 (351)
Q Consensus       162 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----~~~~------------  223 (351)
                      +||..+.+...... .+...+..++|+|+|+++++++. ++.+.++|..+++....+...    +...            
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            99998876554332 34567889999999998777665 567889999887766554321    1122            


Q ss_pred             ---------------------------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecceeEEecCCceeeee
Q psy519          224 ---------------------------VTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       224 ---------------------------v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  276 (351)
                                                 +....++|++..+++++.++..++|...+.... ......+++ ||+..++++
T Consensus       269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~-~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE-AEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS-HHHHTCEEE-EEGGGCCCS
T ss_pred             ecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC-CCeeeEEEE-Eechhhccc
Confidence                                       223333334444444444444444433222110 011123343 777777766


Q ss_pred             eccceeeEEEeeecee-----CceEEEeeEEEEecCCceeeccEEE----ecCCccccceeeeeeee
Q psy519          277 AANSRVRTLREMHEIV-----GPVVVVESFIVEIRPDKWYEANLIV----LDDDLKECNLETYSQMI  334 (351)
Q Consensus       277 ~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~  334 (351)
                      ..++   .+++|+...     ++...+..  ++|+|||++....+-    .++.|.+||.++..+..
T Consensus       347 s~d~---~~k~w~~~~~~~l~~~~~~v~~--~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         347 GSDP---EFKTLPIAEWAGITEGQPRVVQ--GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             SSCC---CEEEECHHHHHTCCSSCCEEEE--EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             ccCC---ceEecccccccccCCCCCcEEE--eEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            6655   556676432     22333444  789999987632221    23457778877776533

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1e-25  Score=197.76  Aligned_cols=295  Identities=10%  Similarity=-0.036  Sum_probs=202.2

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~   79 (351)
                      ..+..++||||  |++|++++.|+.+++||+.+.          ..+|.+.+.+..|+|||++  ++++.++.+++||..
T Consensus        62 ~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          62 YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            35899999999  999999999999999998765          2356667777788999975  678889999999999


Q ss_pred             CCeeeEEeeCC-----------CCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEec-cCCCCeEEEEEccCCC
Q psy519           80 QMYPLRIFVGH-----------KQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGK  146 (351)
Q Consensus        80 ~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~  146 (351)
                      +++.+..+..+           ......+.++|++..+ ++...++.+.+||..+.+...... .+...+..++|+|+|+
T Consensus       140 t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence            99988776543           3456678899998876 455667999999998876544332 3556789999999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCCceeEEecc-----CCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCC-------cEE
Q psy519          147 YLASGGTGSYDKAVRLWSITDGASVRVFSD-----HVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTG-------RVI  213 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-------~~~  213 (351)
                      ++++++..  ++.+.++|.++++....+..     |........+...+...++.. .++.+.+|+....       +..
T Consensus       220 ~~~va~~~--~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~  297 (432)
T d1qksa2         220 YFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  297 (432)
T ss_dssp             EEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEEeccc--cceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEE
Confidence            98887752  66899999988776655432     223333444443444443332 3566666665332       122


Q ss_pred             EEeeccC------------------------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--eeecceeEEe
Q psy519          214 SRFHLQE------------------------HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG--IGVYPRCAAQ  267 (351)
Q Consensus       214 ~~~~~~~------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~s  267 (351)
                      ..+....                        .....++++ ||++.|++++.|+.+++|++.++..+.  ...+.+++||
T Consensus       298 ~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS  376 (432)
T d1qksa2         298 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN  376 (432)
T ss_dssp             EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC
T ss_pred             EEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccccCCCCCcEEEeEEC
Confidence            2221100                        001123444 789999999999999999976543332  2456678999


Q ss_pred             cCCceeeeeecc--ceeeEEEeeeceeCceEEEeeEEEEecCCcee
Q psy519          268 PVGFEAATLAAN--SRVRTLREMHEIVGPVVVVESFIVEIRPDKWY  311 (351)
Q Consensus       268 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  311 (351)
                      |||+.+.+....  .....+.+||..+++...+......++|+|.|
T Consensus       377 ~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G~~  422 (432)
T d1qksa2         377 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKF  422 (432)
T ss_dssp             TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred             CCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCCccCCCeeE
Confidence            999987655432  23457888888888765443322345677765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7.4e-25  Score=192.32  Aligned_cols=258  Identities=10%  Similarity=-0.025  Sum_probs=185.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLE   79 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~   79 (351)
                      ..+..++||||  |++|++++.|+.+++||+.+.          ..+|.+.+.+++|+|||++  +++..++.+++||.+
T Consensus        62 ~~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          62 YAVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             SSEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CCeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            45889999999  999999999999999999866          2356777788889999986  556689999999999


Q ss_pred             CCeeeEEeeCCCCCe-----------EEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeE-EeccCCCCeEEEEEccCCC
Q psy519           80 QMYPLRIFVGHKQDV-----------TCARFHPKITYIGTGSY-DKAVRLWSITDGASVR-VFSDHVSPVLSIAFSPCGK  146 (351)
Q Consensus        80 ~~~~~~~~~~~~~~i-----------~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~  146 (351)
                      +++....+..|...+           ..+.+++++..++.... .+.+.+++........ ....+...+..++|+|+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  219 (426)
T d1hzua2         140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR  219 (426)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSC
T ss_pred             ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCc
Confidence            998887776554433           44555565555544433 3455555555444322 2334677888999999999


Q ss_pred             EEEEEecCCCCCeEEEEEccCC------------------------------------------------------ceeE
Q psy519          147 YLASGGTGSYDKAVRLWSITDG------------------------------------------------------ASVR  172 (351)
Q Consensus       147 ~l~~~~~~~~d~~i~i~d~~~~------------------------------------------------------~~~~  172 (351)
                      +++++...  +..+.+++..++                                                      +...
T Consensus       220 ~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~  297 (426)
T d1hzua2         220 YFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  297 (426)
T ss_dssp             EEEEEETT--CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEeeeec--ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence            88887541  333444443322                                                      3445


Q ss_pred             EeccCCCCEEEEEECCCCcEEEE-------EcCCCeEEEEEcCCCcEEEEee--------ccCCCCEEEEEEcCCCCEEE
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLAS-------GGEDGLVLTHELTTGRVISRFH--------LQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~  237 (351)
                      .+.+|...+..++|+||+++|++       ++.+++|++||+++++...++.        ..+...+.+++|||||++++
T Consensus       298 ~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             EEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             EEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence            56677778899999999999995       4457899999999988765542        12345799999999999775


Q ss_pred             EE-----eCCCeEEEEeCCCCceeeeeecceeEEecCCceee
Q psy519          238 TG-----SLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAA  274 (351)
Q Consensus       238 ~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~s~~~~~~~  274 (351)
                      ..     +.+|.|++||..+++......... .++|+|++.+
T Consensus       378 vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-~~tp~Gk~~~  418 (426)
T d1hzua2         378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-LITPTGKFNV  418 (426)
T ss_dssp             EEECCCTTSCCEEEEEETTTTEEEEEECCTT-CCSEEEEEEH
T ss_pred             EEEecCCCCCCeEEEEECCCCeEEEEECCCC-ccCCCceEeE
Confidence            43     357899999999998877644433 4568877643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1e-22  Score=169.45  Aligned_cols=240  Identities=12%  Similarity=0.055  Sum_probs=191.8

Q ss_pred             cceEEeeecCCccccEE-EEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVL-ANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l-~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|+|+  |++| +++..++.|++||+.+.     ...+ ..+..++|++++..  +++..++.+.+|+..+++.
T Consensus        32 ~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          32 SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCceeeeeecc-ccccccccccccccccccccccceeeeccccccee
Confidence            45678999999  9987 56677899999999887     2333 35688999999976  5667788999999999988


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIG-TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL  162 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i  162 (351)
                      ...+..+ ....++.|+|+++.++ ++..++.+.+|+..+.+....+.. ...+..++++|++..++++...  ++.+.+
T Consensus       109 ~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  184 (301)
T d1l0qa2         109 AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFD--SMSISV  184 (301)
T ss_dssp             EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETT--TTEEEE
T ss_pred             eeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeeccc--cccccc
Confidence            8887654 4578899999998775 455678899999999988888764 4567889999999998887762  567778


Q ss_pred             EEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC---CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEE-EE
Q psy519          163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE---DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL-VT  238 (351)
Q Consensus       163 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  238 (351)
                      |+....+....... ...+..++++++++.+++++.   ++.|++||+.+++....+.  ....+..++|+|||++| ++
T Consensus       185 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         185 IDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             EETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEE
T ss_pred             ccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEE
Confidence            88777666666544 455778999999998776543   4689999999999888764  35578999999999987 56


Q ss_pred             EeCCCeEEEEeCCCCceeeeeec
Q psy519          239 GSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       239 ~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      ++.|+.|++||+++++.+....+
T Consensus       262 ~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCeEEEEECCCCeEEEEEeC
Confidence            77799999999999988877554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.2e-23  Score=176.32  Aligned_cols=226  Identities=15%  Similarity=0.053  Sum_probs=179.3

Q ss_pred             cEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCC----
Q psy519           26 DVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQ----   92 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~----   92 (351)
                      +++++++.|++|++||+.+.       ...+...+.+++|+|||++  ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            68999999999999999987       2334566789999999986  5667899999999999999888766543    


Q ss_pred             -CeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCe
Q psy519           93 -DVTCARFHPKITYIGTGS------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA  159 (351)
Q Consensus        93 -~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~  159 (351)
                       .+..++|+|+++.++++.            .+..+.+||..+++....+.. ...+.+++|+|+|+++++++.     .
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-----~  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR-----D  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS-----S
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC-----C
Confidence             345789999999998775            357899999999998888764 456788999999999998743     4


Q ss_pred             EEEEEccCCceeEEe-----------------------------------------------------------------
Q psy519          160 VRLWSITDGASVRVF-----------------------------------------------------------------  174 (351)
Q Consensus       160 i~i~d~~~~~~~~~~-----------------------------------------------------------------  174 (351)
                      +.+||..+++....+                                                                 
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            566776544322221                                                                 


Q ss_pred             -ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          175 -SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       175 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                       ..+...+..+.++|++.+++.+  ++.+++||+.+++.+..+.  ....+.+++|+|||++|++++.|+.|++||.+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence             1233445667788888887766  5789999999999998875  3457899999999999999999999999999999


Q ss_pred             ceeeeeec
Q psy519          254 SKIGIGVY  261 (351)
Q Consensus       254 ~~~~~~~~  261 (351)
                      +.+....+
T Consensus       312 ~~v~~i~~  319 (337)
T d1pbyb_         312 EKKGQVDL  319 (337)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEC
Confidence            88776433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.7e-22  Score=171.33  Aligned_cols=267  Identities=10%  Similarity=-0.024  Sum_probs=200.7

Q ss_pred             eeecCCccccEEEEecCCCceEEEecCCc-----c-CCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEee
Q psy519           17 NSFKPETVEDVLANLESQKNLQSRYLPYY-----T-SGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFV   88 (351)
Q Consensus        17 ~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~-~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~   88 (351)
                      ++|+++  +++|++++.+++|.+||+.+.     . ..|...+.+++|+|||++  +++..++.|++||+.+++.+..+.
T Consensus         2 ~a~~~~--~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAG--HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTT--CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCC--CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            579999  999999999999999999988     2 245667889999999976  566789999999999999887765


Q ss_pred             CCC------CCeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCCceeEEecc--CCCCeEEEEEccCCCEE
Q psy519           89 GHK------QDVTCARFHPKITYIGTGS------------YDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        89 ~~~------~~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  148 (351)
                      ...      ..+..++|+|||+++++++            .++.+.+||..+++....+..  ....+..+.+++++..+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            432      2355789999999988765            467889999888765544322  23455667777777766


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcE--------------------------EEEEcCCCeE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY--------------------------LASGGEDGLV  202 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------l~~~~~dg~i  202 (351)
                      +.      ++.+.+||+.+++.+..+..+.. ...+.++|++..                          ++++..++.+
T Consensus       160 ~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         160 VA------GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             EE------SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Ee------CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence            54      45789999999888877754332 233444444332                          2233345568


Q ss_pred             EEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeec
Q psy519          203 LTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       203 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~  278 (351)
                      .+||+.++.........+...+..+.+++++.+++... ++.|.+||..+++.+..    ..+..++|+|||+.+++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC
Confidence            88898888877666556667889999999988887765 46899999999988765    34568999999999998877


Q ss_pred             cceeeEEEeeeceeCceE
Q psy519          279 NSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       279 ~~~~~~~~~~~~~~g~~~  296 (351)
                      ++   .+++|+..+++..
T Consensus       312 d~---~v~v~D~~t~~~i  326 (346)
T d1jmxb_         312 FN---DLAVFNPDTLEKV  326 (346)
T ss_dssp             SS---EEEEEETTTTEEE
T ss_pred             CC---cEEEEECccCCEE
Confidence            75   5888998887744

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=3.3e-20  Score=156.45  Aligned_cols=225  Identities=13%  Similarity=0.062  Sum_probs=172.3

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeCC--CCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCceeEEeccCCC-----C
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVGH--KQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSDHVS-----P  135 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~  135 (351)
                      +++++.|++|+|||+++++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~   83 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS   83 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence            389999999999999999999888653  3457899999999987 4667889999999999998887754432     3


Q ss_pred             eEEEEEccCCCEEEEEecC---------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTG---------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      +..++|+|++++++++...         ..+..+.+||..+++....+.. ...+..++|+|||+++++++.+  +.+||
T Consensus        84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d  160 (337)
T d1pbyb_          84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMD  160 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEE
T ss_pred             eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceee
Confidence            4578999999999887531         1257899999999988888764 4557789999999999998754  66788


Q ss_pred             cCCCcEEEEeec-----------------------------------------------------------------cCC
Q psy519          207 LTTGRVISRFHL-----------------------------------------------------------------QEH  221 (351)
Q Consensus       207 ~~~~~~~~~~~~-----------------------------------------------------------------~~~  221 (351)
                      ..+++....+..                                                                 .+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD  240 (337)
T ss_dssp             TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             eecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC
Confidence            776554433311                                                                 111


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee----eecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          222 EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI----GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       222 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      ..+..+.++|++.+++.+  ++.+++||+.+++.+..    ..+..++|+|||..++++..++   .+++|+..+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~---~i~v~D~~t~~~v  314 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG---DLAAYDAETLEKK  314 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSS---EEEEEETTTCCEE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCC---cEEEEECCCCcEE
Confidence            234556677778777665  57999999999988765    3456799999999998887665   5788988887743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=8.3e-21  Score=160.80  Aligned_cols=275  Identities=12%  Similarity=-0.001  Sum_probs=192.9

Q ss_pred             EEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEeccC
Q psy519           56 VEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITYIG-TGSYDKAVRLWSITDGASVRVFSDH  132 (351)
Q Consensus        56 ~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~  132 (351)
                      ++|++++++ ++++.+++|.+||+++++.+.++. .+...+.+++|+|||++++ ++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            468899998 999999999999999999998886 4566788999999999874 5557899999999999888766432


Q ss_pred             C------CCeEEEEEccCCCEEEEEecC---------CCCCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEE
Q psy519          133 V------SPVLSIAFSPCGKYLASGGTG---------SYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       133 ~------~~i~~~~~~~~~~~l~~~~~~---------~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~  195 (351)
                      .      ..+..++|+|||++++++...         ..+..+.+||..+++....+..  ....+..+.+++++..++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      235579999999999877531         1267899999888765443322  2234555677777776654


Q ss_pred             EcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC--------------------------EEEEEeCCCeEEEEe
Q psy519          196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE--------------------------TLVTGSLTGTVQFYG  249 (351)
Q Consensus       196 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------~l~~~~~dg~i~i~~  249 (351)
                      +   +.+.+|++.+++.+..+..  ......+.++|++.                          .++++..++.+.+|+
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECS--TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             C---CcceEEEccCCCEEEEEec--CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            3   4589999999888877642  22333344444433                          233344456788888


Q ss_pred             CCCCceeee------eecceeEEecCCceeeeeeccceeeEEEeeeceeCceEEEee-----EEEEecCCceeeccEEEe
Q psy519          250 WPSASKIGI------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVES-----FIVEIRPDKWYEANLIVL  318 (351)
Q Consensus       250 ~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~  318 (351)
                      ..++.....      ..+..+.++|++..++....+    .+.+|+..+++......     ..+.|+||+.+.... ..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~-~~  311 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN----RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG-GT  311 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES----EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE-SB
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC----eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEE-eC
Confidence            888765543      234567888888887765543    47788877776544322     237899999887654 46


Q ss_pred             cCCccccceeeeeee--eecCCcc
Q psy519          319 DDDLKECNLETYSQM--IPVPSGI  340 (351)
Q Consensus       319 ~~~i~~~~~~~~~~~--~~~~~~~  340 (351)
                      ++.+..||.++.+..  +++|.+-
T Consensus       312 d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CCcEEEEECccCCEEEEEECCCCC
Confidence            788999999987655  5665553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.4e-19  Score=147.37  Aligned_cols=269  Identities=11%  Similarity=0.068  Sum_probs=184.4

Q ss_pred             cEEEEecCCCceEEEecCCc-------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEe---eCCCCC
Q psy519           26 DVLANLESQKNLQSRYLPYY-------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIF---VGHKQD   93 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~   93 (351)
                      ..+++++.+++|++|+++..       ...|.+.+..++|+|||++  +++..|+.|++|++........+   ..+...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            34577788999999998754       3367888999999999986  44555899999999765432222   234455


Q ss_pred             eEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeEE--eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce
Q psy519           94 VTCARFHPKITYIGTGSY-DKAVRLWSITDGASVRV--FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS  170 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~  170 (351)
                      +..++|+|||++|++++. ++.+.+|+.........  ...+...+.++.++|+++++++++..  +..+.+|+......
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~--~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRICLFTVSDDGH  162 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTTSC
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc--cceeeEEEeccCCc
Confidence            678999999999988875 67899998876654333  33466778889999999998888752  66799999876543


Q ss_pred             eEE------eccCCCCEEEEEECCCCcEEEEEc-CCCeEEEEEcCCCc----EEEEeec-----cCCCCEEEEEEcCCCC
Q psy519          171 VRV------FSDHVSPVLSIAFSPCGKYLASGG-EDGLVLTHELTTGR----VISRFHL-----QEHEPVTSLVWSVTGE  234 (351)
Q Consensus       171 ~~~------~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~-----~~~~~v~~~~~~~~~~  234 (351)
                      ...      ..........++|++++.+++... ..+...+++.....    .......     ........++++++++
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence            221      123445678899999998876554 55677788765432    1111111     1224577889999999


Q ss_pred             EEEEE-eCCCeEEEEeCCCCceeee--------eecceeEEecCCceeeeeeccceeeEEEee--eceeCceEEE
Q psy519          235 TLVTG-SLTGTVQFYGWPSASKIGI--------GVYPRCAAQPVGFEAATLAANSRVRTLREM--HEIVGPVVVV  298 (351)
Q Consensus       235 ~l~~~-~~dg~i~i~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~  298 (351)
                      +++.. ..++.+.+|++........        .....++|+|||++++++..++.  .+++|  +..+|....+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~--~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEEEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCC--eEEEEEEECCCCcEEEE
Confidence            77654 5578999998875533211        23457899999999877655432  34444  5556654333

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=3.5e-17  Score=140.05  Aligned_cols=276  Identities=7%  Similarity=-0.090  Sum_probs=188.2

Q ss_pred             CCCccceEEeeecCCccccEEEEec-----CCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEE---------
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLE-----SQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTG---------   67 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~-----~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~---------   67 (351)
                      ..+..++..++++|+  |+.++...     ..+.+.+||..+.     +..+.  ...++|+|||++ +++         
T Consensus        17 ~~~~~p~~~~a~spd--g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          17 GAADGPTNDEAPGAD--GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             ccCCCCccccccCCC--CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCcccc
Confidence            357788999999999  99887642     3457889998776     22232  336899999987 444         


Q ss_pred             -eCCCcEEEEeCCCCeeeEEeeCCCCCe-------EEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEeccCCCCeE
Q psy519           68 -SRDTTARLWSLEQMYPLRIFVGHKQDV-------TCARFHPKITYIGTGS--YDKAVRLWSITDGASVRVFSDHVSPVL  137 (351)
Q Consensus        68 -~~d~~i~vw~~~~~~~~~~~~~~~~~i-------~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~  137 (351)
                       ..++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+.....    ....
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~  168 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPT  168 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccce
Confidence             346789999999999888776655433       4578888888765554  3567889998876655443    3456


Q ss_pred             EEEEccCCCEEE-EEecCCCCCeEEEEEccCCceeEEeccC------CCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCC
Q psy519          138 SIAFSPCGKYLA-SGGTGSYDKAVRLWSITDGASVRVFSDH------VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG  210 (351)
Q Consensus       138 ~~~~~~~~~~l~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  210 (351)
                      ++.++|+++.++ +...   |+.+.+||...++.......+      ......+.+.+++.++ ..+.++.+.+|+...+
T Consensus       169 ~~~~s~~g~~~~v~~~~---dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCA---QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA  244 (373)
T ss_pred             eEEEecCCCcEEEEEcC---CCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence            789999988664 5555   999999999887766554322      1223445566665544 5556888999998776


Q ss_pred             cEEEEeeccC-----------CCCEEEEEEcCCCCEEE----------EEeCCCeEEEEeCCCCceeee----eecceeE
Q psy519          211 RVISRFHLQE-----------HEPVTSLVWSVTGETLV----------TGSLTGTVQFYGWPSASKIGI----GVYPRCA  265 (351)
Q Consensus       211 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~----------~~~~dg~i~i~~~~~~~~~~~----~~~~~~~  265 (351)
                      ..........           ......+++++++..++          ....++.+.+||..+++.+..    .....++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a  324 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAIS  324 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEE
Confidence            5432221111           12234556666665443          455567899999999988765    3455799


Q ss_pred             EecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          266 AQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       266 ~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      |+|||+.+.+.. .+.++.+++|+..+|+..
T Consensus       325 ~spDG~~~l~vt-~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         325 VAQDGGPDLYAL-SAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ECCCCCEEEEEE-eCCCCeEEEEECCCCCEE
Confidence            999998654322 233457899999999844

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-17  Score=140.46  Aligned_cols=246  Identities=12%  Similarity=0.146  Sum_probs=170.3

Q ss_pred             CCccceEEeeecCCccccEEEE-ecCCCceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEe-CCCcEEEEe
Q psy519            9 GDHKHFIQNSFKPETVEDVLAN-LESQKNLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGS-RDTTARLWS   77 (351)
Q Consensus         9 ~~~~~v~~~~~sp~~~~~~l~~-~~~~~~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~-~d~~i~vw~   77 (351)
                      .|...+..++||||  |++|++ +..++.|++|++...        ...+...+..++|+|||++ ++++ .++.+.+|+
T Consensus        34 ~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            46688899999999  998854 455899999998765        2223455678999999987 5555 477899998


Q ss_pred             CCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeEE------eccCCCCeEEEEEccCCCEE
Q psy519           78 LEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGASVRV------FSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        78 ~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l  148 (351)
                      .........  ...+...+.++.++|++++++.++. +..+.+|+.........      ..........++|++++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            876654333  3456667888999999998887765 46799999876543221      12244567889999999988


Q ss_pred             EEEecCCCCCeEEEEEccCCc----eeEEec------cCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEee
Q psy519          149 ASGGTGSYDKAVRLWSITDGA----SVRVFS------DHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~----~~~~~~------~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  217 (351)
                      +.....  .+...+++.....    ......      ........+++++++++++.. ..++.+.+|++..........
T Consensus       192 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         192 YCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             Eeeccc--cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            776542  5677788765432    111111      123456788999999876654 567889999887554332221


Q ss_pred             --ccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEe--CCCCceeee
Q psy519          218 --LQEHEPVTSLVWSVTGETLVTGSL-TGTVQFYG--WPSASKIGI  258 (351)
Q Consensus       218 --~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~--~~~~~~~~~  258 (351)
                        ......+..++|+|||++|++++. ++.|.+|+  .++++....
T Consensus       270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence              123356788999999998877654 68999995  456655433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.2e-18  Score=148.31  Aligned_cols=239  Identities=10%  Similarity=-0.010  Sum_probs=164.2

Q ss_pred             ceEEeeecCCccccEEEEec-----CCCceEEEecCCc---cCCCccceEEEEECCCCcE-EE----------EeCCCcE
Q psy519           13 HFIQNSFKPETVEDVLANLE-----SQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LT----------GSRDTTA   73 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~-----~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~----------~~~d~~i   73 (351)
                      ++.-.+.+|+  ++++++..     .++.|.+||..+.   ..-+.+....++|+|||++ ++          +..++.|
T Consensus         3 p~~~~a~spd--g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPD--ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCC--TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCC--CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            4445578999  99887642     4567999999887   1112233347899999976 33          2457899


Q ss_pred             EEEeCCCCeeeEEeeCCC-------CCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEeccCC-------CCeE
Q psy519           74 RLWSLEQMYPLRIFVGHK-------QDVTCARFHPKITYIGTGS--YDKAVRLWSITDGASVRVFSDHV-------SPVL  137 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~-------~~i~  137 (351)
                      ++||+.+++.+..+..+.       .....++|+|+++.+++++  .+..+.+|+..+++.+..+..+.       ....
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            999999999887765332       2234688999999887765  45689999998887665443211       1111


Q ss_pred             EEE--------------------------------------EccCCCEEEEEecCCCCCeEEEEEccCCceeEE--eccC
Q psy519          138 SIA--------------------------------------FSPCGKYLASGGTGSYDKAVRLWSITDGASVRV--FSDH  177 (351)
Q Consensus       138 ~~~--------------------------------------~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~  177 (351)
                      .+.                                      +.+++..++.++.   ++.+++|++..++....  ...+
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---TSEEEEEECTTSSCEECCCEESS
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC---CCeEEEEecCCCcEEEEeccCCc
Confidence            233                                      3344444555555   88899999877653221  1111


Q ss_pred             ----------CCCEEEEEECCCCcEEEEEcCC----------CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC--E
Q psy519          178 ----------VSPVLSIAFSPCGKYLASGGED----------GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE--T  235 (351)
Q Consensus       178 ----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~  235 (351)
                                ......++++|++..++....+          ..|.+||..+++.+..+..  ...+.+++|+|||+  +
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l  315 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLL  315 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEE
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--CCCEEEEEEcCCCCeEE
Confidence                      1123457899999888776543          3699999999998887753  35688999999997  4


Q ss_pred             EEEEeCCCeEEEEeCCCCceeee
Q psy519          236 LVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       236 l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      +++++.|+.|++||+++++.++.
T Consensus       316 ~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         316 YALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEEEE
Confidence            56677799999999999988765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=9.3e-17  Score=137.39  Aligned_cols=283  Identities=11%  Similarity=-0.042  Sum_probs=197.8

Q ss_pred             CCCccceEEEEECCCCcE-EEE-----eCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------
Q psy519           47 SGHDMTVWSVEACSKGLA-LTG-----SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS----------  110 (351)
Q Consensus        47 ~~~~~~i~~~~~~~~~~~-~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------  110 (351)
                      ..+..++..++++|+|+. +..     +..+.+.+||.++++.+..+..+..+  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            457788999999999987 332     23467999999999999888766544  789999999998875          


Q ss_pred             CCCcEEEEeCCCCceeEEeccCCCCe-------EEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEE
Q psy519          111 YDKAVRLWSITDGASVRVFSDHVSPV-------LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS  183 (351)
Q Consensus       111 ~dg~i~i~d~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  183 (351)
                      .++.|.+||..+++.+..+..+....       ..+.|+++++.++.... ..++.+.+|+....+......    ...+
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVVQGGSSDDQLLS----SPTC  169 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE-cCCCceEEeeccCCeEEEEec----ccee
Confidence            35789999999999887776544333       45788888887766543 115678899987776554443    3567


Q ss_pred             EEECCCCcE-EEEEcCCCeEEEEEcCCCcEEEEeeccCC-----CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy519          184 IAFSPCGKY-LASGGEDGLVLTHELTTGRVISRFHLQEH-----EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG  257 (351)
Q Consensus       184 ~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  257 (351)
                      +.++|+++. +++.+.|+.+.+|+...+...........     .....+.+++++.++ ..+.++.+.+|+........
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEE
Confidence            889998875 46788899999999988776655432111     223455666666544 55678899999988775442


Q ss_pred             e-----------------eecceeEEecCCceeeeeeccce-------eeEEEeeeceeCceEEEee-----EEEEecCC
Q psy519          258 I-----------------GVYPRCAAQPVGFEAATLAANSR-------VRTLREMHEIVGPVVVVES-----FIVEIRPD  308 (351)
Q Consensus       258 ~-----------------~~~~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~-----~~~~~~~~  308 (351)
                      .                 .....++++|++..++.....+.       ...+.+|+..+++......     ..+.|+||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD  328 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD  328 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCC
Confidence            2                 11234677888877665444332       2356788887776544321     22689999


Q ss_pred             ceee-ccEEEecCCccccceeeeeeeeecC
Q psy519          309 KWYE-ANLIVLDDDLKECNLETYSQMIPVP  337 (351)
Q Consensus       309 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~  337 (351)
                      +++. ...-..++.+..||++++.....++
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            8753 2233467789999999998876665

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=8.5e-16  Score=130.26  Aligned_cols=273  Identities=13%  Similarity=0.004  Sum_probs=183.5

Q ss_pred             EEECCCCcE-EEE-----eCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEe
Q psy519           56 VEACSKGLA-LTG-----SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS----------YDKAVRLWS  119 (351)
Q Consensus        56 ~~~~~~~~~-~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d  119 (351)
                      .+.+||++. +..     ..++.+.+||..+++.+..+..+..+  .++|+|||++|++++          .++.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            356799977 332     24567999999999999888765544  699999999887653          478999999


Q ss_pred             CCCCceeEEeccCC-------CCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCC-------CEEEEE
Q psy519          120 ITDGASVRVFSDHV-------SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS-------PVLSIA  185 (351)
Q Consensus       120 ~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~i~~~~  185 (351)
                      ..+++.+..+..+.       .....++|+|++++++++.. ..+..+.+||..+++.+..+..+..       ....+.
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            99999887764322       22346899999999887753 2267899999999988877654332       122344


Q ss_pred             ECCCCcEEEEEc-CCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee------
Q psy519          186 FSPCGKYLASGG-EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI------  258 (351)
Q Consensus       186 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~------  258 (351)
                      +++|++.++... .++.+.+++.....      ..+...+....+.+++..++.++.++.+++|++..++....      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence            555555444332 22333444332221      11223455667888888999999999999999988754321      


Q ss_pred             -----------eecceeEEecCCceeeeeeccce-------eeEEEeeeceeCceEEEee-----EEEEecCCceee-cc
Q psy519          259 -----------GVYPRCAAQPVGFEAATLAANSR-------VRTLREMHEIVGPVVVVES-----FIVEIRPDKWYE-AN  314 (351)
Q Consensus       259 -----------~~~~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~-~~  314 (351)
                                 .....++++|++..+.....++.       ...+.+|+..+++......     ..+.|+||+++. ..
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence                       12235788888887766554432       3568889988876553221     136899998743 22


Q ss_pred             EEEecCCccccceeeeeeeeecC
Q psy519          315 LIVLDDDLKECNLETYSQMIPVP  337 (351)
Q Consensus       315 ~~~~~~~i~~~~~~~~~~~~~~~  337 (351)
                      .-..++.+..||.+++.....++
T Consensus       318 ~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEC
T ss_pred             EECCCCEEEEEECCCCCEEEEEe
Confidence            22346789999999987766654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=1e-14  Score=128.63  Aligned_cols=284  Identities=9%  Similarity=-0.016  Sum_probs=171.3

Q ss_pred             CCCccceEEeeecCCccccEEEEecC---------CCceEEEecCCc----cCCCccceEEEEECCCCcEEEEeCCCcEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLES---------QKNLQSRYLPYY----TSGHDMTVWSVEACSKGLALTGSRDTTAR   74 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~---------~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~   74 (351)
                      ..|...|.++.||||  |++|+.++.         ++.+.+||+.++    +..+...+..+.|+|||+.++-..++.++
T Consensus        58 ~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~  135 (470)
T d2bgra1          58 DEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIY  135 (470)
T ss_dssp             TTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEE
T ss_pred             hhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccce
Confidence            446678999999999  999998743         567889999988    67788899999999999986667788999


Q ss_pred             EEeCCCCeeeEEeeCC------------------CCCeEEEEEeCCCCEEEEEeCCCc-EEEE-----------------
Q psy519           75 LWSLEQMYPLRIFVGH------------------KQDVTCARFHPKITYIGTGSYDKA-VRLW-----------------  118 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~dg~-i~i~-----------------  118 (351)
                      +|+..+++..+....+                  ......+.|+|||+.|+....|.+ +..|                 
T Consensus       136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~  215 (470)
T d2bgra1         136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR  215 (470)
T ss_dssp             EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred             EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence            9999988766543322                  223456889999999998765432 3322                 


Q ss_pred             ------------------eCCCCceeEEe-----------ccCCCCeEEEEEccCCCEEEEEecCCCC-CeEEEE--Ecc
Q psy519          119 ------------------SITDGASVRVF-----------SDHVSPVLSIAFSPCGKYLASGGTGSYD-KAVRLW--SIT  166 (351)
Q Consensus       119 ------------------d~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~l~~~~~~~~d-~~i~i~--d~~  166 (351)
                                        ++..++.....           ......+..+.|.+++..++.......+ ..+.++  |..
T Consensus       216 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~  295 (470)
T d2bgra1         216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (470)
T ss_dssp             EECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             eccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCC
Confidence                              22221111000           0112335678888888766654321112 234444  444


Q ss_pred             CCceeEEec-------------cCCCCEEEEEECCCC--cEEEEEcCCCeEEE--EEcCCCcEEEEeeccCCCCEEEEEE
Q psy519          167 DGASVRVFS-------------DHVSPVLSIAFSPCG--KYLASGGEDGLVLT--HELTTGRVISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       167 ~~~~~~~~~-------------~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~  229 (351)
                      ++.......             .+...  ...+.+++  .+++.+..+|...+  |+...+. ...+. .+...|..+ +
T Consensus       296 tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt-~g~~~v~~~-~  370 (470)
T d2bgra1         296 SGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFIT-KGTWEVIGI-E  370 (470)
T ss_dssp             TTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESC-CSSSCEEEE-E
T ss_pred             CCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCc-eeeec-cCCeeEEEE-E
Confidence            443322110             11111  22344433  34566667775544  4554433 33333 445567766 3


Q ss_pred             cCCCCEE-EEEeCCC----e--EEEEeCCCCceeee---------eecceeEEecCCceeeeeeccceeeEEEeeeceeC
Q psy519          230 SVTGETL-VTGSLTG----T--VQFYGWPSASKIGI---------GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVG  293 (351)
Q Consensus       230 ~~~~~~l-~~~~~dg----~--i~i~~~~~~~~~~~---------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g  293 (351)
                      +++++.+ ++++.++    .  |.-.++..+.....         ..+++++|||||++++...++...-..++|...+|
T Consensus       371 ~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g  450 (470)
T d2bgra1         371 ALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (470)
T ss_dssp             EECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             EECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCC
Confidence            4445544 4444332    2  33334444333221         34568999999999888888777777888888888


Q ss_pred             ceEEE
Q psy519          294 PVVVV  298 (351)
Q Consensus       294 ~~~~~  298 (351)
                      +.+.+
T Consensus       451 ~~v~~  455 (470)
T d2bgra1         451 KGLRV  455 (470)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            75544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=2.9e-15  Score=127.96  Aligned_cols=234  Identities=7%  Similarity=-0.087  Sum_probs=157.7

Q ss_pred             EeeecCCccccEEEEec----------CCCceEEEecCCc-----cCC-------CccceEEEEECCCCcE-EEEe-CCC
Q psy519           16 QNSFKPETVEDVLANLE----------SQKNLQSRYLPYY-----TSG-------HDMTVWSVEACSKGLA-LTGS-RDT   71 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~----------~~~~i~i~~~~~~-----~~~-------~~~~i~~~~~~~~~~~-~~~~-~d~   71 (351)
                      .++|+||  |+.|++.+          .++.|.+||..+.     ...       .......++|+|||++ +++. .++
T Consensus        69 ~~a~spD--g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCC--CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            4899999  99888753          4677999998876     111       1122346899999987 4454 579


Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE------eccCCCCeEEEEEccCC
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV------FSDHVSPVLSIAFSPCG  145 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~~~  145 (351)
                      .+.+||+.+++....+..+.....   +......++..+.||.+.++++........      +..+...+....+.+++
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence            999999999998888766544321   111234566667788888888765443222      12233445567788887


Q ss_pred             CEEEEEecCCCCCeEEEEEccCCceeEEecc--C----------CCCEEEEEECCCCcEEEEEcCC---------CeEEE
Q psy519          146 KYLASGGTGSYDKAVRLWSITDGASVRVFSD--H----------VSPVLSIAFSPCGKYLASGGED---------GLVLT  204 (351)
Q Consensus       146 ~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~----------~~~i~~~~~~~~~~~l~~~~~d---------g~i~i  204 (351)
                      ..+...     .+.++++++..+........  +          ......++++|++..++....+         ..|.+
T Consensus       224 ~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         224 MLVWAV-----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             EEEECB-----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             EEEEec-----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            666553     56777777766544332211  0          0112347889988877665322         35899


Q ss_pred             EEcCCCcEEEEeeccCCCCEEEEEEcCCCC-E-EEEEeCCCeEEEEeCCCCceeeeeec
Q psy519          205 HELTTGRVISRFHLQEHEPVTSLVWSVTGE-T-LVTGSLTGTVQFYGWPSASKIGIGVY  261 (351)
Q Consensus       205 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-l~~~~~dg~i~i~~~~~~~~~~~~~~  261 (351)
                      ||..+++.+..+..  ...+..++|+|||+ + ++++..++.|++||..+++.++...+
T Consensus       299 ~D~~t~~~~~~~~~--~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         299 VTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCcEeEEecC--CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999998877653  35688999999997 3 45667789999999999998876443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.63  E-value=4.6e-14  Score=120.55  Aligned_cols=256  Identities=13%  Similarity=-0.009  Sum_probs=173.4

Q ss_pred             EEEecCCCceEEEecCCc--------c---------------------------CCCccceEEEEECCCCcE--EEEeCC
Q psy519           28 LANLESQKNLQSRYLPYY--------T---------------------------SGHDMTVWSVEACSKGLA--LTGSRD   70 (351)
Q Consensus        28 l~~~~~~~~i~i~~~~~~--------~---------------------------~~~~~~i~~~~~~~~~~~--~~~~~d   70 (351)
                      +++++.+|.|++|++...        +                           ..|.-.......+|||++  +....+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            556778999999998765        0                           012223344445688987  455678


Q ss_pred             CcEEEEeCCCCeeeEEee-CCCCCeEEEEEeCCCC--EEEEEeCCC-----------------cEEEEeCCCCceeEEec
Q psy519           71 TTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKIT--YIGTGSYDK-----------------AVRLWSITDGASVRVFS  130 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~~~  130 (351)
                      +.|.++|+++++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877664 3567889999999998  444444322                 23557888877776665


Q ss_pred             cCCCCeEEEEEccCCCEEEEEecCC--------------------------------------CCCeEEEEEccCCceeE
Q psy519          131 DHVSPVLSIAFSPCGKYLASGGTGS--------------------------------------YDKAVRLWSITDGASVR  172 (351)
Q Consensus       131 ~~~~~i~~~~~~~~~~~l~~~~~~~--------------------------------------~d~~i~i~d~~~~~~~~  172 (351)
                      .. .....++++|+|+++++++..+                                      .++.+.+++....+.+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            33 4567899999999998876421                                      12344555545555566


Q ss_pred             EeccCCCCEEEEEECCCCcEEEE-EcCCCeEEEEEcCCCcEE----------EEeeccCCCCEEEEEEcCCCCEEEEEeC
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLAS-GGEDGLVLTHELTTGRVI----------SRFHLQEHEPVTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  241 (351)
                      .+..... ...+.++|||+++++ +..++.+.+||+......          ........-.....+|+++|..+.+...
T Consensus       253 ~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         253 YIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            6655544 467999999998765 567899999998642210          0011111223566789999998888999


Q ss_pred             CCeEEEEeCCC---------Cc-e----------eeeeecceeEEecCCceeeeeeccceeeEE
Q psy519          242 TGTVQFYGWPS---------AS-K----------IGIGVYPRCAAQPVGFEAATLAANSRVRTL  285 (351)
Q Consensus       242 dg~i~i~~~~~---------~~-~----------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  285 (351)
                      |.+|..|++..         .. .          -+.......+++|||++|+++.--+.++.+
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence            99999999741         11 1          122445567899999999999777666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=3.5e-14  Score=121.06  Aligned_cols=274  Identities=5%  Similarity=-0.090  Sum_probs=173.7

Q ss_pred             CccceEEeeecCCccccE--EEE-ecCCCc--eEEEecCCc-----cCCCccceEEEEECCCCcE-EEE----------e
Q psy519           10 DHKHFIQNSFKPETVEDV--LAN-LESQKN--LQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTG----------S   68 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~--l~~-~~~~~~--i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~----------~   68 (351)
                      +..+...++..++  ++.  ++. ...++.  +.++|....     ...+..  ..++|+|||+. ++.          .
T Consensus        18 ~~g~~~~~a~~~~--~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAI--SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCC--TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCC--CcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccc
Confidence            4455566677788  664  332 344555  556677665     222222  25899999976 332          3


Q ss_pred             CCCcEEEEeCCCCeeeEEeeCCCC-------CeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEeccCCCCeEEEE
Q psy519           69 RDTTARLWSLEQMYPLRIFVGHKQ-------DVTCARFHPKITYIGTGS-YDKAVRLWSITDGASVRVFSDHVSPVLSIA  140 (351)
Q Consensus        69 ~d~~i~vw~~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  140 (351)
                      .|+.|++||..+++++..+..+..       ....++|+|||++++++. .++.+.+||+.+++....+..+.....   
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---  170 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---  170 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---
Confidence            467899999999998877754322       234689999999998776 469999999999998887765443321   


Q ss_pred             EccCCCEEEEEecCCCCCeEEEEEccCCceeEEe------ccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEE
Q psy519          141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVIS  214 (351)
Q Consensus       141 ~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  214 (351)
                      +......++..+.   |+.+..+++.........      ..+...+....+.+++..+...  .+.+++++...+....
T Consensus       171 ~~~~~~~~v~~~~---Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         171 HPGAAATHYLGSC---PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATM  245 (368)
T ss_dssp             EEEETTEEECCCC---TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEE
T ss_pred             ccCCCceEEEEcC---CCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEE
Confidence            1112334444445   788888877654332221      2233444567788887766544  4556777776554433


Q ss_pred             EeeccCC-----------CCEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeee----eecceeEEecCC
Q psy519          215 RFHLQEH-----------EPVTSLVWSVTGETLVTGSLT---------GTVQFYGWPSASKIGI----GVYPRCAAQPVG  270 (351)
Q Consensus       215 ~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~----~~~~~~~~s~~~  270 (351)
                      .......           .....+++++++..++....+         ..|.+||..+++.+..    ..+..++|+|||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG  325 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG  325 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSS
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCC
Confidence            2211110           123457889998877665332         3699999999987764    455678999999


Q ss_pred             ceeeeeeccceeeEEEeeeceeCceE
Q psy519          271 FEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +.++++... ....+++|+..+|+..
T Consensus       326 ~~~ly~s~~-~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         326 ASDNYANSA-GTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SCEEEEEET-TTTEEEEEESSSCEEE
T ss_pred             CEEEEEEeC-CCCeEEEEECCCCCEE
Confidence            865444332 2347899998888743

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.60  E-value=5.3e-14  Score=120.15  Aligned_cols=246  Identities=11%  Similarity=0.012  Sum_probs=165.7

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEeeC------------------------------CCCCeEEEEEeCCCCEEEEEe-CCC
Q psy519           65 LTGSRDTTARLWSLEQMYPLRIFVG------------------------------HKQDVTCARFHPKITYIGTGS-YDK  113 (351)
Q Consensus        65 ~~~~~d~~i~vw~~~~~~~~~~~~~------------------------------~~~~i~~i~~~~~~~~l~~~~-~dg  113 (351)
                      ++++.+|+|+||++.+++.++.+.-                              |..........|||++|++.. .+.
T Consensus        15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~   94 (441)
T d1qnia2          15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT   94 (441)
T ss_dssp             EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred             EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence            7888999999999999987776521                              122234444578999886664 578


Q ss_pred             cEEEEeCCCCceeEEec-cCCCCeEEEEEccCCCEE--EEEecCC--------------CCCeEEEEEccCCceeEEecc
Q psy519          114 AVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYL--ASGGTGS--------------YDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       114 ~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l--~~~~~~~--------------~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      +|.++|+++++....+. .....+..++|+|+|+.+  +..+...              ....+..+|..+.+...++..
T Consensus        95 rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v  174 (441)
T d1qnia2          95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV  174 (441)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec
Confidence            99999999998877664 356788999999999854  3333200              001245588888777776654


Q ss_pred             CCCCEEEEEECCCCcEEEEEcCC-----------------------------------------CeEEEEEcCCCcEEEE
Q psy519          177 HVSPVLSIAFSPCGKYLASGGED-----------------------------------------GLVLTHELTTGRVISR  215 (351)
Q Consensus       177 ~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~~~~~  215 (351)
                      . .....+.++|+|+++++.+.+                                         +.+.+++......+..
T Consensus       175 ~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         175 D-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             C-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            3 346789999999998877643                                         2334444444444555


Q ss_pred             eeccCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcee------------ee----eecceeEEecCCceeeeeec
Q psy519          216 FHLQEHEPVTSLVWSVTGETLVT-GSLTGTVQFYGWPSASKI------------GI----GVYPRCAAQPVGFEAATLAA  278 (351)
Q Consensus       216 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~------------~~----~~~~~~~~s~~~~~~~~~~~  278 (351)
                      +.  .......+.++|||+++++ +..+++|.+||+.+....            ..    ......+|.++|....+...
T Consensus       254 IP--vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         254 IP--VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EC--CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             Ee--CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            43  3345688999999998755 666999999998653211            10    11234588999987777777


Q ss_pred             cceeeEEE---------------eeece-----eCceEEEeeEEEEecCCceeeccE
Q psy519          279 NSRVRTLR---------------EMHEI-----VGPVVVVESFIVEIRPDKWYEANL  315 (351)
Q Consensus       279 ~~~~~~~~---------------~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      ++.+..|.               +|+..     .||...+.+  ..++|||+|+...
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~--~t~~pdGk~l~s~  386 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLT--ESRDADGKWLVVL  386 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT--TSTTCCCCEEEEE
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccc--cccCCCCcEEEec
Confidence            77665554               22221     466555555  6899999998644

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=7.6e-14  Score=123.01  Aligned_cols=133  Identities=11%  Similarity=0.064  Sum_probs=104.8

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE-EEEe---------CCCcEE
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA-LTGS---------RDTTAR   74 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~-~~~~---------~d~~i~   74 (351)
                      ..+.|.++  ++++..  .++.+.+|++.++          +..|...|.++.|+|||++ +.++         .++.+.
T Consensus        20 ~~~~W~~d--~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISD--HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSS--SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCC--CEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            45889999  887764  4778999999887          4556678999999999987 5543         256789


Q ss_pred             EEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccC------------------CCCe
Q psy519           75 LWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH------------------VSPV  136 (351)
Q Consensus        75 vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~i  136 (351)
                      +||+++++. ..+..+...+..+.|+|||+.++... ++.+++|+..+++..+.....                  .+..
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999998874 45778888999999999999999865 788999999988765543221                  2234


Q ss_pred             EEEEEccCCCEEEEEec
Q psy519          137 LSIAFSPCGKYLASGGT  153 (351)
Q Consensus       137 ~~~~~~~~~~~l~~~~~  153 (351)
                      ..+.|||||+.|+....
T Consensus       174 ~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             BCEEECTTSSEEEEEEE
T ss_pred             cccEECCCCCccceeEe
Confidence            56889999999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=1.9e-10  Score=93.56  Aligned_cols=232  Identities=12%  Similarity=0.102  Sum_probs=165.5

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCC-CcEEE--EeCCCcEEEEeCC
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSK-GLALT--GSRDTTARLWSLE   79 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~-~~~~~--~~~d~~i~vw~~~   79 (351)
                      ....++++|+  |+++++-..+..|++|+.+..          ..+.......+++.++ +..+.  .+.++.|.+++..
T Consensus        24 ~P~gvavd~d--g~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTT--CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCC--CCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            4578999999  998888777889999997654          1112223445555544 33432  3345677777754


Q ss_pred             CCeeeEEee-CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           80 QMYPLRIFV-GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        80 ~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                       ++....+. ........+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.++++.+++...   
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~---  176 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR---  176 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc---
Confidence             55555553 334567889999999988888878889999854 5555554  335567888999999988887776   


Q ss_pred             CCeEEEEEccCCceeEEec--cCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEEEEeeccCC-CCEEEEEEcCC
Q psy519          157 DKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVT  232 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~  232 (351)
                      .+.|++||. +++.+..+.  +.......+++.|+|+++++-.. ++.|.+|+. +++.+..+..... .....+++.|+
T Consensus       177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            889999996 566676663  23445789999999997777554 457999984 6887777653332 46889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc
Q psy519          233 GETLVTGSLTGTVQFYGWPSAS  254 (351)
Q Consensus       233 ~~~l~~~~~dg~i~i~~~~~~~  254 (351)
                      |.+++ ++.+++|++|......
T Consensus       255 G~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             TEEEE-EETTTEEEEEECSCCC
T ss_pred             CcEEE-EeCCCeEEEEEeeeec
Confidence            97554 5678999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=6.3e-11  Score=95.39  Aligned_cols=234  Identities=7%  Similarity=-0.073  Sum_probs=157.0

Q ss_pred             cceEEeeecCCccccEEEEe-cCCCceEEEecCCc-----cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy519           12 KHFIQNSFKPETVEDVLANL-ESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPL   84 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~   84 (351)
                      .....++++++  |.+.++. ...+.+..++....     ...-......+++++++.+ ++....+.+++++-.+...+
T Consensus        14 ~~P~~vavd~d--G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSA--GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTT--CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCC--CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            34478999999  9976654 45567777766554     1122234567899999988 55555566666665555444


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        85 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                      .... ......++++.++++++++-..+..+..++..................+++++|+++.+++...   ++.|..+|
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~---~~~i~~~d  167 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD---NNRVVKLE  167 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG---GTEEEEEC
T ss_pred             eeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc---cccccccc
Confidence            3332 2345789999999998887766777888886654432222222345578999999998777666   88899999


Q ss_pred             ccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCe
Q psy519          165 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT  244 (351)
Q Consensus       165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  244 (351)
                      .............-.....+++.++|+++++....+.|..++..... ...+....-.....|+++++|.++++-..+++
T Consensus       168 ~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         168 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTE
T ss_pred             cccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCE
Confidence            76554333322444567899999999988888888888888765433 33332223356789999999998877677788


Q ss_pred             EEEEeCCC
Q psy519          245 VQFYGWPS  252 (351)
Q Consensus       245 i~i~~~~~  252 (351)
                      |+.++...
T Consensus       247 I~~i~~~~  254 (260)
T d1rwia_         247 VVKLTSLE  254 (260)
T ss_dssp             EEEECCCG
T ss_pred             EEEEeCCC
Confidence            87766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.5e-09  Score=87.47  Aligned_cols=227  Identities=14%  Similarity=0.086  Sum_probs=141.8

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE-EEEe-CC--CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA-LTGS-RD--TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG  107 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~~~~-~d--~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  107 (351)
                      .|.+.|.+..    +..+...+...+|+|||+. +... ..  ..+.+.+...+... .+..+........|+|+|+.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            4556566544    3445677889999999987 4333 22  24666777666543 4456777888999999999888


Q ss_pred             EEeCC-Cc--EEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          108 TGSYD-KA--VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       108 ~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      ..... +.  +..+........ .............+++++..++..........|.+.++..+.. .............
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~  176 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  176 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred             EeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccc
Confidence            76542 22  333333333322 2333445556677888887766655422233567777665543 3344556667788


Q ss_pred             EECCCCcEEEEEcCCC---eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeee
Q psy519          185 AFSPCGKYLASGGEDG---LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL---TGTVQFYGWPSASKIGI  258 (351)
Q Consensus       185 ~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~  258 (351)
                      .|+|+++.++..+.++   .+.+.+...+.. ...  ..........|+|||+.|+..+.   ...|+++++..+.....
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  253 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccc-eEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            9999999888766543   445555554443 222  34456678899999999876554   34788999987765543


Q ss_pred             ----eecceeEEec
Q psy519          259 ----GVYPRCAAQP  268 (351)
Q Consensus       259 ----~~~~~~~~s~  268 (351)
                          ..+...+|||
T Consensus       254 t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         254 PATDGQVKFPAWSP  267 (269)
T ss_dssp             CCSSSEEEEEEECC
T ss_pred             eCCCCcEEeEEeCC
Confidence                2233456776

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=1.8e-10  Score=92.60  Aligned_cols=225  Identities=11%  Similarity=-0.009  Sum_probs=145.5

Q ss_pred             cceEEEEECCCCcE-EEE-eCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q psy519           51 MTVWSVEACSKGLA-LTG-SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV  128 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  128 (351)
                      ....++++.++|.+ ++. +..+.+..++...................++++++++++++....+.+++++-.+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            44678999999987 554 3456777776654432222222223457889999998887776666676665544444333


Q ss_pred             eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcC
Q psy519          129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT  208 (351)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  208 (351)
                      .. ......+++++++++++++-..   +..+..++...................+++.|+++++++...++.|..+|..
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGG---GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             ee-eeeecccccccccceeEeeccc---cccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc
Confidence            32 2356789999999988776555   6778888765443222222223345789999999988888888999999976


Q ss_pred             CCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-----eecceeEEecCCceeeeeeccc
Q psy519          209 TGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI-----GVYPRCAAQPVGFEAATLAANS  280 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~  280 (351)
                      ..... .+..........++++++|+++++....+.|..++.........     .....+++.++|..+++-..+.
T Consensus       170 ~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         170 SNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             TCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred             cceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence            54433 33333446689999999999888888888999888655432211     2334678888886544433333

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=7.2e-10  Score=89.37  Aligned_cols=218  Identities=14%  Similarity=0.076  Sum_probs=139.9

Q ss_pred             cEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEE
Q psy519           72 TARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK---AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL  148 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  148 (351)
                      .|.|.|....... .+..+...+...+|||||+.||......   .+.+.+...+... .+..+........|+|+|+.+
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            5888887654444 4444567788999999999998775443   4777777665544 344467788899999999999


Q ss_pred             EEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEE-cCCC--eEEEEEcCCCcEEEEeeccCCCCEE
Q psy519          149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG-GEDG--LVLTHELTTGRVISRFHLQEHEPVT  225 (351)
Q Consensus       149 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~  225 (351)
                      +..........+..+........ .............+++++..++.. ..+|  .+...++..+......  .......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~--~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--CSSSEEE
T ss_pred             eEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeee--ccccccc
Confidence            87765322233444443333333 333344455566778877655444 4444  4566666555433222  3445677


Q ss_pred             EEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeee---eecceeEEecCCceeeeeeccceeeEEEeeeceeCc
Q psy519          226 SLVWSVTGETLVTGSLTG---TVQFYGWPSASKIGI---GVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGP  294 (351)
Q Consensus       226 ~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~  294 (351)
                      ...|+|+++.++..+.++   .+.+.+...+.....   .......|||||+.++.....+....+.+++...+.
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            889999999888766543   455556555544322   233456899999999988877766677777766555

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.39  E-value=2e-10  Score=94.54  Aligned_cols=222  Identities=10%  Similarity=0.031  Sum_probs=152.1

Q ss_pred             ceEEeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcE-EEEeCCCcEEEEeCCCC--eeeEE
Q psy519           13 HFIQNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLA-LTGSRDTTARLWSLEQM--YPLRI   86 (351)
Q Consensus        13 ~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~--~~~~~   86 (351)
                      .+..++++|+  |+++++...+++|..++....   .......+.+++|.++|++ ++...++.+..++....  .....
T Consensus        29 ~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPD--GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTT--SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCC--CCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4667999999  999999988999988887655   4445678999999999998 77777888888876533  22211


Q ss_pred             e-eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEec----------cCCCCeEEEEEccCCCEEEEEecCC
Q psy519           87 F-VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS----------DHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        87 ~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      . .........+++.++++++++.+.++.+..+|...+.......          ........+.++  +..++.+... 
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~-  183 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE-  183 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT-
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCC-
Confidence            1 2344567899999999998888888999999988765332221          112344566664  4445444332 


Q ss_pred             CCCeEEEEEccCCceeE---EeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeecc-CCCCEEEEEE--
Q psy519          156 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-EHEPVTSLVW--  229 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~--  229 (351)
                       .+.|..++........   .+. .......+++.++|+++++...++.|..++.. ++........ .-...++++|  
T Consensus       184 -~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         184 -KMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             -TTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred             -CCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcC
Confidence             7889988876543221   111 22334579999999988888788999999874 4433333222 2356899999  


Q ss_pred             -cCCCCEEEEEeCC
Q psy519          230 -SVTGETLVTGSLT  242 (351)
Q Consensus       230 -~~~~~~l~~~~~d  242 (351)
                       ++|++.|++++..
T Consensus       261 ~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         261 TEGDCTAIYVVTNG  274 (302)
T ss_dssp             STTTTTEEEEEECT
T ss_pred             CCCCCCEEEEECCC
Confidence             6788888776544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.37  E-value=1e-09  Score=92.64  Aligned_cols=239  Identities=13%  Similarity=0.110  Sum_probs=145.4

Q ss_pred             CccceEEeeecCCccccEEEEecCCCceEEEecCCc-----c--CCCccceEEEEECCCCcE--EEEe--CCCcEEEEeC
Q psy519           10 DHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----T--SGHDMTVWSVEACSKGLA--LTGS--RDTTARLWSL   78 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~--~~~~~~i~~~~~~~~~~~--~~~~--~d~~i~vw~~   78 (351)
                      ...++.-|+|+|+  +++|.+... +.+..|.+...     .  .........+.++++++.  ++..  ..+.+..+.+
T Consensus        38 ~~~~~s~la~s~d--~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHE--RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTT--SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCC--CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            3444567999999  998887654 56777766543     0  011122334567777763  3322  2345555443


Q ss_pred             CC-------------Cee---eEE-eeCCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeE---Ee--ccCCCC
Q psy519           79 EQ-------------MYP---LRI-FVGHKQDVTCARFHPKITYIGTGSY-DKAVRLWSITDGASVR---VF--SDHVSP  135 (351)
Q Consensus        79 ~~-------------~~~---~~~-~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~--~~~~~~  135 (351)
                      ..             ++.   ... -......+.++.|+|+|++++++.. ...|.+|+......+.   ..  ......
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            21             111   101 1122334789999999998888764 3578888765432221   11  223467


Q ss_pred             eEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE-----ec--------------cCCCCEEEEEECCCCcEEEEE
Q psy519          136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV-----FS--------------DHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       136 i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-----~~--------------~~~~~i~~~~~~~~~~~l~~~  196 (351)
                      .+.++|+|+++++++..+.  ++.|.+|++..++....     ..              ........+.++|||++|+++
T Consensus       195 Pr~i~f~pdg~~~yv~~e~--~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             EEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCceEEEeccC--CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            8999999999998777653  88999999876543211     10              011235678999999999887


Q ss_pred             cC------CCeEEEEEcCCCcEEEEe----e-ccCCCCEEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCC
Q psy519          197 GE------DGLVLTHELTTGRVISRF----H-LQEHEPVTSLVWSV-TGETLVTGS-LTGTVQFYGWPSA  253 (351)
Q Consensus       197 ~~------dg~i~i~d~~~~~~~~~~----~-~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~~~~~~  253 (351)
                      ..      .+.|..|++.....+...    . .........++++| +|++|+++. .++.|.+|++...
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            43      234777777543222211    1 11224567899998 799887764 5799999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=8e-10  Score=93.37  Aligned_cols=235  Identities=12%  Similarity=0.040  Sum_probs=136.8

Q ss_pred             ccceEEEEECCCCcEEEEeCCCcEEEEeCCC-CeeeEEe-eCCCCCeEEEEEeCCCCEEE--EEe-CCCcEEEEeCCCC-
Q psy519           50 DMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIF-VGHKQDVTCARFHPKITYIG--TGS-YDKAVRLWSITDG-  123 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-~~~~~~~-~~~~~~i~~i~~~~~~~~l~--~~~-~dg~i~i~d~~~~-  123 (351)
                      ...+.-|+|+++++.+-+...+.+..|.+.. +...... .........+.++++++.++  ++. ..+.+..+.+... 
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            4445669999999874334456778887653 2222111 11222344677788887443  322 2345554443211 


Q ss_pred             ------------ce---eEE-eccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeE---Ee--ccCCCCEE
Q psy519          124 ------------AS---VRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVR---VF--SDHVSPVL  182 (351)
Q Consensus       124 ------------~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~---~~--~~~~~~i~  182 (351)
                                  +.   ... -......+.++.|+|+|++++++..+  ...|.+|+......+.   ..  .......+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g--~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT--ANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC--CCEEEEEEccCCCceeeccceeecCCCCceE
Confidence                        10   111 11123457899999999999988653  5678888765432222   11  12345688


Q ss_pred             EEEECCCCcEEEEEc-CCCeEEEEEcCCCcEEEE-----eec-------------cCCCCEEEEEEcCCCCEEEEEeC--
Q psy519          183 SIAFSPCGKYLASGG-EDGLVLTHELTTGRVISR-----FHL-------------QEHEPVTSLVWSVTGETLVTGSL--  241 (351)
Q Consensus       183 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~~-------------~~~~~v~~~~~~~~~~~l~~~~~--  241 (351)
                      .++|+|+++++++.. .++.|.+|++..+.....     ...             ........+.++|+|++|+++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            999999999886655 578999999876542211     111             01123567899999999988643  


Q ss_pred             ----CCeEEEEeCCCCceeee-----------eecceeEEec-CCceeeeeecc-ceeeEEE
Q psy519          242 ----TGTVQFYGWPSASKIGI-----------GVYPRCAAQP-VGFEAATLAAN-SRVRTLR  286 (351)
Q Consensus       242 ----dg~i~i~~~~~~~~~~~-----------~~~~~~~~s~-~~~~~~~~~~~-~~~~~~~  286 (351)
                          .+.|..|++.....+..           .....++++| +|++++++... +.+.+++
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence                23477787765332211           1224588998 78877666443 4344443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.5e-08  Score=82.02  Aligned_cols=227  Identities=12%  Similarity=0.084  Sum_probs=154.9

Q ss_pred             cceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeC------CCCCeEEEEEeCCCC-EEEE-EeCCCcEEEEeCC
Q psy519           51 MTVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVG------HKQDVTCARFHPKIT-YIGT-GSYDKAVRLWSIT  121 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~i~~i~~~~~~~-~l~~-~~~dg~i~i~d~~  121 (351)
                      .....++++++|++ ++-..+..|++||.+ ++.+..+..      .......+++.++.. .+++ .+.++.|..++. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            34678999999988 666677889999965 565555521      122345666666543 3433 234567777775 


Q ss_pred             CCceeEEec-cCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe--ccCCCCEEEEEECCCCcEEEEEcC
Q psy519          122 DGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGE  198 (351)
Q Consensus       122 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~  198 (351)
                      .++....+. ........+++.++|+++++...   .+.+.+++. +++.+..+  ..+......+++.++++.+++...
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~---~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeec---cceeeEecc-CCceeecccccccccccceeeeccceeEEeeecc
Confidence            466555553 34456788999999998887766   788888885 56666655  334567788999999999888888


Q ss_pred             CCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeee-------eecceeEEecC
Q psy519          199 DGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSL-TGTVQFYGWPSASKIGI-------GVYPRCAAQPV  269 (351)
Q Consensus       199 dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~-------~~~~~~~~s~~  269 (351)
                      .+.|++||. +++.+..+.... ......++++++|+++++-.. ++.|.+|+ ++++.+..       .....+++.|+
T Consensus       177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            999999997 567676663222 245889999999997777544 45799998 45665433       23456788999


Q ss_pred             CceeeeeeccceeeEEE
Q psy519          270 GFEAATLAANSRVRTLR  286 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (351)
                      |..++ ...+.+++.++
T Consensus       255 G~l~V-~~~n~~v~~fr  270 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYR  270 (279)
T ss_dssp             TEEEE-EETTTEEEEEE
T ss_pred             CcEEE-EeCCCeEEEEE
Confidence            87543 44455444444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.33  E-value=3.8e-09  Score=87.07  Aligned_cols=232  Identities=12%  Similarity=0.048  Sum_probs=152.4

Q ss_pred             eEEeeecCCccccEEEEecC-------CCceEEEecCCc---------cCCCccceEEEEECCCCcE-EEEeCCCcEEEE
Q psy519           14 FIQNSFKPETVEDVLANLES-------QKNLQSRYLPYY---------TSGHDMTVWSVEACSKGLA-LTGSRDTTARLW   76 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~-------~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~~~-~~~~~d~~i~vw   76 (351)
                      .-.++|.|+  |+++++...       +++|..|+..+.         ..........++|.+++.. +++...+.+...
T Consensus        20 ~EGpa~d~d--G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDKN--GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECTT--SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CeEeEEeCC--CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            456789999  998876433       456888887765         1111234678999999864 677777778889


Q ss_pred             eCCCCeeeEEeeCCC----CCeEEEEEeCCCCEEEEEeC---------------CCcEEEEeCCCCceeEEeccCCCCeE
Q psy519           77 SLEQMYPLRIFVGHK----QDVTCARFHPKITYIGTGSY---------------DKAVRLWSITDGASVRVFSDHVSPVL  137 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i~  137 (351)
                      +.+............    ...+.+++.++|++.++...               .|.|+.++.. ++...... ......
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Ccceee
Confidence            987654322111111    13577999999988776432               2345555543 34333332 233457


Q ss_pred             EEEEccCCC----EEEEEecCCCCCeEEEEEccCCceeE------Eecc-CCCCEEEEEECCCCcEEEEEcCCCeEEEEE
Q psy519          138 SIAFSPCGK----YLASGGTGSYDKAVRLWSITDGASVR------VFSD-HVSPVLSIAFSPCGKYLASGGEDGLVLTHE  206 (351)
Q Consensus       138 ~~~~~~~~~----~l~~~~~~~~d~~i~i~d~~~~~~~~------~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  206 (351)
                      .++|+|+++    .|+++..  ..+.|..||+.....+.      .+.. .....-.+++.++|++.++....+.|.+||
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            899999765    4555432  17889999886543322      1111 122356799999999888887889999999


Q ss_pred             cCCCcEEEEeeccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q psy519          207 LTTGRVISRFHLQEHEPVTSLVWSVTGETL-VTGSLTGTVQFYGWPS  252 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~  252 (351)
                      ...++....+..+ ...+.+++|.|+++.| ++.+.+|.|.-++++.
T Consensus       254 p~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         254 PDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            9888776666533 3568899999998755 5566778898888764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=1.3e-09  Score=89.54  Aligned_cols=222  Identities=10%  Similarity=0.027  Sum_probs=149.7

Q ss_pred             ceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEE
Q psy519           52 TVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA--SVRV  128 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~  128 (351)
                      .+..+++.|||++ ++...+++|..|+.....  ..+......+.+++|.++|+++++...++.+..++.....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4678999999998 777889999999866432  3344456778999999999999988888888888765432  2111


Q ss_pred             e-ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec----------cCCCCEEEEEECCCCcEEEEEc
Q psy519          129 F-SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS----------DHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       129 ~-~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                      . .........+++.++++++++-..   ++.+..+|...+.......          ........+.+.. +.++++.+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~  182 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSY---RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNT  182 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETT---TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEET
T ss_pred             cccCCccccceeEEccCCCEEeeccc---cccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecC
Confidence            1 123456789999999988887766   8889888887764332221          1122355666653 44566667


Q ss_pred             CCCeEEEEEcCCCcEEEEee-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-e-----eecceeEE---e
Q psy519          198 EDGLVLTHELTTGRVISRFH-LQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG-I-----GVYPRCAA---Q  267 (351)
Q Consensus       198 ~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-~-----~~~~~~~~---s  267 (351)
                      ..+.|+.++........... .........++++++|++.++...+++|..++........ .     .....++|   +
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence            78889988876543221111 1122346789999999988888888999999876443221 1     12346788   6


Q ss_pred             cCCceeeeeecc
Q psy519          268 PVGFEAATLAAN  279 (351)
Q Consensus       268 ~~~~~~~~~~~~  279 (351)
                      +|++.+.+....
T Consensus       263 ~D~~~Lyvtt~~  274 (302)
T d2p4oa1         263 GDCTAIYVVTNG  274 (302)
T ss_dssp             TTTTEEEEEECT
T ss_pred             CCCCEEEEECCC
Confidence            677766655443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.6e-09  Score=93.03  Aligned_cols=282  Identities=9%  Similarity=-0.003  Sum_probs=167.3

Q ss_pred             cceEEeeecCCccccEEEEec---------CCCceEEEecCCc----c---CCCccceEEEEECCCCcEEEEeCCCcEEE
Q psy519           12 KHFIQNSFKPETVEDVLANLE---------SQKNLQSRYLPYY----T---SGHDMTVWSVEACSKGLALTGSRDTTARL   75 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~---------~~~~i~i~~~~~~----~---~~~~~~i~~~~~~~~~~~~~~~~d~~i~v   75 (351)
                      ..+....||||  +++++...         ..+.+.++|+.++    +   ......+....|+|+|+.++--.++.|.+
T Consensus        61 ~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~  138 (465)
T d1xfda1          61 LRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYY  138 (465)
T ss_dssp             TTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEE
T ss_pred             cccceeEECCC--CCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEE
Confidence            35567789999  99887753         3567888998876    1   22334556688999998855566789999


Q ss_pred             EeCCCCeeeEEeeCC-CC-----------------CeEEEEEeCCCCEEEEEeCC-C-----------------------
Q psy519           76 WSLEQMYPLRIFVGH-KQ-----------------DVTCARFHPKITYIGTGSYD-K-----------------------  113 (351)
Q Consensus        76 w~~~~~~~~~~~~~~-~~-----------------~i~~i~~~~~~~~l~~~~~d-g-----------------------  113 (351)
                      .+..++..++..... ..                 .-.++.|||||+.|+....| .                       
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            998877655444321 11                 12467899999999876422 1                       


Q ss_pred             ----------cEEEEeCCCCceeEEec------cCCCCeEEEEEccCCCEEEEEec-CCCCCeEEEEEccCCceeEEecc
Q psy519          114 ----------AVRLWSITDGASVRVFS------DHVSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       114 ----------~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                                .+.++|+.++.......      .....+..+.|+|++++++.... ......+.++|..+++....+..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence                      24555554443222111      12224677899999886665433 11123688899998876655432


Q ss_pred             CC-CC----EEEEEECCCCcEEE---EEcCC--CeEEEEEcC------CCcEEEEeeccCCCCEEEE-EEcCCCCEEE-E
Q psy519          177 HV-SP----VLSIAFSPCGKYLA---SGGED--GLVLTHELT------TGRVISRFHLQEHEPVTSL-VWSVTGETLV-T  238 (351)
Q Consensus       177 ~~-~~----i~~~~~~~~~~~l~---~~~~d--g~i~i~d~~------~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-~  238 (351)
                      .. ..    -....|+|||+.++   ..-.+  +.++.+++.      .+..+..+. .+.-.|..+ .|+++++.+. +
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT-~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEE
T ss_pred             cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEec-cCCceEEEEEEEcCCCCEEEEE
Confidence            21 11    13457899987432   22223  244444432      223233332 334456665 6888887664 4


Q ss_pred             EeCC--CeEEEEeC--CCCceee--------eeecceeEEecCCceeeeeeccceeeEEEeeeceeCceE
Q psy519          239 GSLT--GTVQFYGW--PSASKIG--------IGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVV  296 (351)
Q Consensus       239 ~~~d--g~i~i~~~--~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (351)
                      +..+  +.-++|.+  ..+....        ....++..|||++++++...++...-...++....|+.+
T Consensus       378 a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~  447 (465)
T d1xfda1         378 STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM  447 (465)
T ss_dssp             ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred             EeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEE
Confidence            4433  23345544  3332211        234578999999999887777765555666666666533

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.26  E-value=4.2e-08  Score=80.93  Aligned_cols=224  Identities=15%  Similarity=0.034  Sum_probs=146.8

Q ss_pred             ceEEEEECCCCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCcee
Q psy519           52 TVWSVEACSKGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY----DKAVRLWSITDGASV  126 (351)
Q Consensus        52 ~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~  126 (351)
                      .+..++|.++|++ ++-...+.|..|+.++++....+.........++++++|+++++...    .+.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            3468899999988 77678899999998887666656556667889999999988876543    234566665555444


Q ss_pred             EEecc--CCCCeEEEEEccCCCEEEEEecCC---CCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEE-EEcCCC
Q psy519          127 RVFSD--HVSPVLSIAFSPCGKYLASGGTGS---YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGEDG  200 (351)
Q Consensus       127 ~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  200 (351)
                      .....  .......+++.++|++.++.....   ..+.+..++...+ .+..+...-.....++|+|+++.|+ +-+..+
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCC
Confidence            33322  234577899999998776643210   1234555654433 3333322233467899999998664 446678


Q ss_pred             eEEEEEcCCC-cEEE----E--eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-----------cc
Q psy519          201 LVLTHELTTG-RVIS----R--FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGV-----------YP  262 (351)
Q Consensus       201 ~i~i~d~~~~-~~~~----~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----------~~  262 (351)
                      .|..|++... ....    .  ...........+++.++|++.++....+.|.+|+ +.++.+....           ..
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~  278 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRST  278 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCC
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceee
Confidence            9999998632 1111    1  1112223467899999999888888899999999 5677776533           34


Q ss_pred             eeEEecCCceeeeee
Q psy519          263 RCAAQPVGFEAATLA  277 (351)
Q Consensus       263 ~~~~s~~~~~~~~~~  277 (351)
                      ++++.|.+..+.+..
T Consensus       279 ~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         279 HPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             eEEEeCCCCEEEEEc
Confidence            566766665544433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=1.1e-08  Score=84.31  Aligned_cols=222  Identities=8%  Similarity=-0.050  Sum_probs=140.9

Q ss_pred             eEEEEECCCCcEEEEeC--------CCcEEEEeCCCCeeeEEeeCC----CCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy519           53 VWSVEACSKGLALTGSR--------DTTARLWSLEQMYPLRIFVGH----KQDVTCARFHPKITYIGTGSYDKAVRLWSI  120 (351)
Q Consensus        53 i~~~~~~~~~~~~~~~~--------d~~i~vw~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  120 (351)
                      ...++|.++|++...+.        ++.|..||.++++........    ......++|.++++.++++.....+..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            44678999998843332        467889998887654333221    223578999999998888877778889997


Q ss_pred             CCCceeEEeccCC----CCeEEEEEccCCCEEEEEecC------------CCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          121 TDGASVRVFSDHV----SPVLSIAFSPCGKYLASGGTG------------SYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       121 ~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~~------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      .............    .....+++.++|++.++-...            ...+.|..++. .++..... ..-.....+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeeee
Confidence            6543222111111    135779999999887764220            01344555553 34333332 222345688


Q ss_pred             EECCCCc-----EEEEEcCCCeEEEEEcCCCcEEEE------eeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy519          185 AFSPCGK-----YLASGGEDGLVLTHELTTGRVISR------FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSA  253 (351)
Q Consensus       185 ~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~  253 (351)
                      +|+|++.     ++++-+..+.|..||+.....+..      +..........+++.++|++.++....+.|.+||.+.+
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            9988764     445556788999998764433321      11112234678999999998888778899999998877


Q ss_pred             ceeee-----eecceeEEecCCceeeee
Q psy519          254 SKIGI-----GVYPRCAAQPVGFEAATL  276 (351)
Q Consensus       254 ~~~~~-----~~~~~~~~s~~~~~~~~~  276 (351)
                      +....     .....++|.|+++.+.+.
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence            65443     233468999988755443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.24  E-value=4.2e-08  Score=80.95  Aligned_cols=221  Identities=13%  Similarity=-0.024  Sum_probs=147.0

Q ss_pred             EEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEe-C----CCcEEEEeCCCCeee
Q psy519           15 IQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGS-R----DTTARLWSLEQMYPL   84 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~-~----d~~i~vw~~~~~~~~   84 (351)
                      -.++|.++  |++.++-...+.|..|+....     ..........+++.++|+++.+. .    .+.+...+.......
T Consensus        43 EG~~~D~~--G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          43 EGLNFDRQ--GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             EEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             EeCEECCC--CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            56899999  998777777888988887665     22344567899999999884443 2    234555555554443


Q ss_pred             EEeeC--CCCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCC
Q psy519           85 RIFVG--HKQDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY  156 (351)
Q Consensus        85 ~~~~~--~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  156 (351)
                      .....  .......+++.++|++.++...      .+.+..++...+ .+..+...-.....++|+|+++.|+.+...  
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~--  197 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETT--  197 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGG--
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEeccc--
Confidence            33321  2345778999999987766432      234666665433 333332233456789999999977666432  


Q ss_pred             CCeEEEEEccCC-ceeEE-------eccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCC-----CC
Q psy519          157 DKAVRLWSITDG-ASVRV-------FSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----EP  223 (351)
Q Consensus       157 d~~i~i~d~~~~-~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~  223 (351)
                      .+.|..||+... .....       ........-.+++.++|++.++....+.|.+||. .++.+..+..+..     ..
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence            789999998643 21111       1111223567999999998888888999999995 7888888865432     24


Q ss_pred             EEEEEEcCCCCEEEEEeC
Q psy519          224 VTSLVWSVTGETLVTGSL  241 (351)
Q Consensus       224 v~~~~~~~~~~~l~~~~~  241 (351)
                      +.+++|.++...+++.+.
T Consensus       277 ~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CCEEEECTTSCEEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEcC
Confidence            789999998877766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.9e-09  Score=92.69  Aligned_cols=216  Identities=14%  Similarity=0.072  Sum_probs=139.6

Q ss_pred             EEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCC---CCCeEEEEEeCCCCEEEEEe---------CCCcEEEEeCCCC
Q psy519           56 VEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGH---KQDVTCARFHPKITYIGTGS---------YDKAVRLWSITDG  123 (351)
Q Consensus        56 ~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~---------~dg~i~i~d~~~~  123 (351)
                      ..|.+++.++.-..+|.|.+||+.+++....+...   ...+....|+||+++++...         ..+.+.++|+.++
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            35888887765567788999999887654444332   23567788999999988764         3578899999987


Q ss_pred             ceeEEe--ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEecc-CCCC-----------------EEE
Q psy519          124 ASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-HVSP-----------------VLS  183 (351)
Q Consensus       124 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----------------i~~  183 (351)
                      +.....  ......+....|||||+.+|...    ++.|.+.+...+..++.... ....                 -..
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence            754432  22344566789999999999875    78899999877765554432 1111                 246


Q ss_pred             EEECCCCcEEEEEcC-CCe---------------------------------EEEEEcCCCcEEEEeecc-----CCCCE
Q psy519          184 IAFSPCGKYLASGGE-DGL---------------------------------VLTHELTTGRVISRFHLQ-----EHEPV  224 (351)
Q Consensus       184 ~~~~~~~~~l~~~~~-dg~---------------------------------i~i~d~~~~~~~~~~~~~-----~~~~v  224 (351)
                      +.|||||++||.... +..                                 +.++|+.++.........     ...-+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            789999999987642 222                                 334444333221111000     01125


Q ss_pred             EEEEEcCCCCEEEEEeC-C---CeEEEEeCCCCceeeee----------ecceeEEecCCceeee
Q psy519          225 TSLVWSVTGETLVTGSL-T---GTVQFYGWPSASKIGIG----------VYPRCAAQPVGFEAAT  275 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~-d---g~i~i~~~~~~~~~~~~----------~~~~~~~s~~~~~~~~  275 (351)
                      ..+.|++++++++.... +   ..+.++|..+++.....          ......|+|+|..+..
T Consensus       258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~f  322 (465)
T d1xfda1         258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (465)
T ss_dssp             EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEE
Confidence            77899999987665432 2   36888999988755431          1235689999986543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.07  E-value=5.5e-07  Score=73.14  Aligned_cols=217  Identities=15%  Similarity=0.059  Sum_probs=147.2

Q ss_pred             EeeecCCccccEEEEecCCCceEEEecCCc---cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeC---
Q psy519           16 QNSFKPETVEDVLANLESQKNLQSRYLPYY---TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG---   89 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---   89 (351)
                      ...|++.+ +.++.+--..+.|.-|+..++   .......+.++++.++|.++.++.+ .+.++|.++++.......   
T Consensus        22 gp~wd~~~-~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          22 GPTFDPAS-GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEEEETTT-TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTT
T ss_pred             CCeEECCC-CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecC
Confidence            35678751 444444345678888888776   2233456888999999988666664 588999998875433321   


Q ss_pred             -CCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEE
Q psy519           90 -HKQDVTCARFHPKITYIGTGSY----DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS  164 (351)
Q Consensus        90 -~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d  164 (351)
                       ....++.+.+.|+|++.++...    .+.-.+|.+..++....... ......++|+++++.++.+...  .+.|..|+
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~--~~~I~~~~  176 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTK--VNRLMRVP  176 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETT--TCEEEEEE
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecc--cceeeEee
Confidence             1235788999999987766432    23456676666665554433 3455789999999987766542  77899888


Q ss_pred             ccCC------ce--eEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEc-CCCCE
Q psy519          165 ITDG------AS--VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS-VTGET  235 (351)
Q Consensus       165 ~~~~------~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  235 (351)
                      +...      +.  ........+....+++..+|++.++.-..+.|..||. +++.+..+.++. ..+++++|- ++.+.
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~-~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG-KQTTCPAFIGPDASR  254 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-SBEEEEEEESTTSCE
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC-CceEEEEEeCCCCCE
Confidence            7431      11  1222334456788999999998887777889999995 688888887644 468999995 57666


Q ss_pred             EEEE
Q psy519          236 LVTG  239 (351)
Q Consensus       236 l~~~  239 (351)
                      |++.
T Consensus       255 LyvT  258 (295)
T d2ghsa1         255 LLVT  258 (295)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=3.7e-07  Score=73.31  Aligned_cols=230  Identities=11%  Similarity=-0.007  Sum_probs=128.7

Q ss_pred             ECCC--CcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC-C-----CcEEEEeCCCCceeEEe
Q psy519           58 ACSK--GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY-D-----KAVRLWSITDGASVRVF  129 (351)
Q Consensus        58 ~~~~--~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~  129 (351)
                      .+|+  |+.++-..++.|.+.|+.+++.. .+..+.......+|||||+.|+.... +     ..|.+++..+++..+..
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4677  87744445678999999988764 45566777889999999999886542 2     24788888777654432


Q ss_pred             cc------CCCCeEEEEEccCCCEEEEEecCCC---CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCC
Q psy519          130 SD------HVSPVLSIAFSPCGKYLASGGTGSY---DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG  200 (351)
Q Consensus       130 ~~------~~~~i~~~~~~~~~~~l~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  200 (351)
                      ..      ........+|+|+|+.++.......   ...+...+...+.....   +........+.+++..++......
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFEL  161 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCC
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecccc
Confidence            11      1234567899999999987644211   22355566554443222   222222333333333333332211


Q ss_pred             -----------eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeee---eeccee
Q psy519          201 -----------LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL--TGTVQFYGWPSASKIGI---GVYPRC  264 (351)
Q Consensus       201 -----------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~---~~~~~~  264 (351)
                                 ................  ..........++++.. +.....  ...|.++|+.+++....   ......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~  238 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSGAFKKIV--DMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPR  238 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTEEEEEE--CCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEECCCCCSSCEE
T ss_pred             ceeeeeccCCcceeeeeccccceeecc--CCccccceeeeecccc-ceecccccccceEEEeCCCCceEEeecCCCcccc
Confidence                       1122222222222221  2233445556665432 222222  34688888887765543   223345


Q ss_pred             EEecCCceeeeeeccceeeEEEeeeceeCceEEE
Q psy519          265 AAQPVGFEAATLAANSRVRTLREMHEIVGPVVVV  298 (351)
Q Consensus       265 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (351)
                      .|+|||+.++.... +   .+.+++..+|+...+
T Consensus       239 ~~SpDG~~I~f~~~-~---~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         239 HLNTDGRRILFSKG-G---SIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEESSSCEEEEET-T---EEEEECTTTCCEEEC
T ss_pred             cCcCCCCEEEEEeC-C---EEEEEECCCCCEEEe
Confidence            79999999876443 3   356667777764443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=8.4e-07  Score=71.11  Aligned_cols=229  Identities=13%  Similarity=0.048  Sum_probs=127.7

Q ss_pred             ecCCccccEEEEecCCCceEEEecCCc----cCCCccceEEEEECCCCcE-E-EEeCC-----CcEEEEeCCCCeeeEEe
Q psy519           19 FKPETVEDVLANLESQKNLQSRYLPYY----TSGHDMTVWSVEACSKGLA-L-TGSRD-----TTARLWSLEQMYPLRIF   87 (351)
Q Consensus        19 ~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~-~-~~~~d-----~~i~vw~~~~~~~~~~~   87 (351)
                      .||+-.|+.+|.. .++.|.+.++...    +..+.+.+...+|+|||+. + +...+     ..|.+++..+++..+..
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4555337788776 4567888899877    5566677889999999986 3 22222     24778888887765432


Q ss_pred             e------CCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           88 V------GHKQDVTCARFHPKITYIGTGSYD------KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        88 ~------~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      .      ..........|+|+++.|+.....      ..+...+...+......   ....... +.+++..++......
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHI-LFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEE-EEETTEEEEEESCSC
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCcccee-eecCCCeEEEeeccc
Confidence            1      122345678999999998875432      23455555544432222   2222223 334444433322100


Q ss_pred             C---------CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcC--CCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          156 Y---------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGE--DGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       156 ~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      .         ................ ............++++. .+.....  ...|.++|+.++... .+....  ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~--~~  235 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT--DY  235 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC--SS
T ss_pred             cceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC--Cc
Confidence            0         1112222222222222 22333444555666553 3333332  346888888766543 332222  22


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI  258 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  258 (351)
                      ....|+|||+.|+.. .++.|+++|+.+++..+.
T Consensus       236 ~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         236 YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             ccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            334689999988774 468999999998876554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.74  E-value=2.9e-05  Score=62.60  Aligned_cols=214  Identities=14%  Similarity=0.016  Sum_probs=139.0

Q ss_pred             EEEECC-CCcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-
Q psy519           55 SVEACS-KGLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-  131 (351)
Q Consensus        55 ~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  131 (351)
                      +..|.+ ++.+ .+--..+.|..||.++++.. .+. ....+.++++.+++.++++ +.+ .+..+|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            455765 4555 45456788999999987653 332 3456889999988877665 444 588999998875443321 


Q ss_pred             ---CCCCeEEEEEccCCCEEEEEec-CCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEE-EEcCCCeEEEEE
Q psy519          132 ---HVSPVLSIAFSPCGKYLASGGT-GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA-SGGEDGLVLTHE  206 (351)
Q Consensus       132 ---~~~~i~~~~~~~~~~~l~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d  206 (351)
                         ....+..+.+.|+|++.++... ....+.-.+|.+..++....... -.....++|+++++.++ +-+..+.|+.|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence               1235788999999987776532 11134556777777765544433 33467899999998654 556678899888


Q ss_pred             cCCC------cEEEEeec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-----ceeEEe-cCCcee
Q psy519          207 LTTG------RVISRFHL-QEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY-----PRCAAQ-PVGFEA  273 (351)
Q Consensus       207 ~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~~s-~~~~~~  273 (351)
                      +...      +....... ........+++..+|++.++.-..+.|..|| +.++.+....+     ++++|- |+...|
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEE
Confidence            7421      11111111 2235688999999999888777788999999 56777765433     345553 455444


Q ss_pred             e
Q psy519          274 A  274 (351)
Q Consensus       274 ~  274 (351)
                      .
T Consensus       256 y  256 (295)
T d2ghsa1         256 L  256 (295)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=8e-05  Score=58.79  Aligned_cols=228  Identities=9%  Similarity=-0.053  Sum_probs=142.3

Q ss_pred             cEEEEecCCCceEEEecCCc----------cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCeeeEEeeCCCCC
Q psy519           26 DVLANLESQKNLQSRYLPYY----------TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMYPLRIFVGHKQD   93 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~----------~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~~~~~   93 (351)
                      .+|+.+. .+.|+-.+++..          ...+...+..++|...+..  .+-..++.|+..++........+......
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            4455443 345665665543          2223345667888876544  55566788999888766555444444456


Q ss_pred             eEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeE
Q psy519           94 VTCARFHPKITYIG-TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVR  172 (351)
Q Consensus        94 i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~  172 (351)
                      +.++++..-+..|+ +-...+.|.+.++........+.........++++|...+++....+.....|.--++.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            88999987555554 54557899999987655433344444678999999988877766442223345555665444333


Q ss_pred             EeccCCCCEEEEEECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeC
Q psy519          173 VFSDHVSPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG-SLTGTVQFYGW  250 (351)
Q Consensus       173 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~  250 (351)
                      .....-.....+++.+.++.|+.+ ...+.|...++..... ..+. .......++++.  +..|... ...+.|...|.
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~-~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEE-CCCCCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence            333334567899999877766554 5678899999865443 3332 222345678775  4455544 45688999999


Q ss_pred             CCCceeee
Q psy519          251 PSASKIGI  258 (351)
Q Consensus       251 ~~~~~~~~  258 (351)
                      .+++....
T Consensus       237 ~~g~~~~~  244 (263)
T d1npea_         237 AISKEMDT  244 (263)
T ss_dssp             TTTEEEEE
T ss_pred             CCCccceE
Confidence            88876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.42  E-value=0.00011  Score=60.87  Aligned_cols=222  Identities=12%  Similarity=-0.023  Sum_probs=138.1

Q ss_pred             CCcE--EEEeCCCcEEEEeCCCCeeeEEeeC-CCCCeEEEEEeC--CCCEEEEEeCC------------------CcEEE
Q psy519           61 KGLA--LTGSRDTTARLWSLEQMYPLRIFVG-HKQDVTCARFHP--KITYIGTGSYD------------------KAVRL  117 (351)
Q Consensus        61 ~~~~--~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~i~~i~~~~--~~~~l~~~~~d------------------g~i~i  117 (351)
                      ||++  +.--.+..|.+.|+++.+..+...- ....+..++..+  +..+++..+.+                  +.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            6777  4555688999999999987665433 334567777654  45577766652                  23667


Q ss_pred             EeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCC------------CeEEEEEc--------------------
Q psy519          118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYD------------KAVRLWSI--------------------  165 (351)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d------------~~i~i~d~--------------------  165 (351)
                      +|..+.+......- ......++++++|+++++.+..+..            ..+.++++                    
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            89888887666643 3456679999999999987642111            12334443                    


Q ss_pred             ---cCC---ceeEEeccCCCCEEEEEECCCCcEEEEEcC-CCeEEEEEcCCCcEE----------EEeeccCCCCEEEEE
Q psy519          166 ---TDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGE-DGLVLTHELTTGRVI----------SRFHLQEHEPVTSLV  228 (351)
Q Consensus       166 ---~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~----------~~~~~~~~~~v~~~~  228 (351)
                         +..   ..+..+.... ....+..+|||+++++++. +..+.++|++.-...          ..-+....-....-+
T Consensus       257 VD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             ecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence               221   1122222112 2356899999999887764 889999998632110          001112234567788


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC----------ceeeeeec----------ceeEEecCCceeeeeeccceeeE
Q psy519          229 WSVTGETLVTGSLTGTVQFYGWPSA----------SKIGIGVY----------PRCAAQPVGFEAATLAANSRVRT  284 (351)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~i~~~~~~----------~~~~~~~~----------~~~~~s~~~~~~~~~~~~~~~~~  284 (351)
                      |+.+|....+.--|.+|.-|++...          ..+....+          ..-...|+|+++++..--+.+|.
T Consensus       336 fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrf  411 (459)
T d1fwxa2         336 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  411 (459)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             cCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccc
Confidence            9888865566667999999998532          22222211          22345789999988876666553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=0.00034  Score=55.02  Aligned_cols=214  Identities=9%  Similarity=0.019  Sum_probs=135.5

Q ss_pred             cceEEeeecCCccccEEEEe-cCCCceEEEecCCc-----cCCCccceEEEEECC-CCcE-EEEeCCCcEEEEeCCCCee
Q psy519           12 KHFIQNSFKPETVEDVLANL-ESQKNLQSRYLPYY-----TSGHDMTVWSVEACS-KGLA-LTGSRDTTARLWSLEQMYP   83 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~-~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~-~~~~-~~~~~d~~i~vw~~~~~~~   83 (351)
                      ..+..++|.+.  .+.|... ...+.|+..+++..     .......+.++++.. .+++ .+-...+.|.+.++.....
T Consensus        36 ~~~~~ld~D~~--~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          36 KVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcEEEEEEEeC--CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            45677899987  6766654 45677888887655     222234677888864 3444 6667788999999886554


Q ss_pred             eEEeeCCCCCeEEEEEeCCCCEEEEEeCC-C--cEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeE
Q psy519           84 LRIFVGHKQDVTCARFHPKITYIGTGSYD-K--AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV  160 (351)
Q Consensus        84 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i  160 (351)
                      ...+.........+++.|...+++..... +  .|.--++............-....++++++.++.|+.+...  .+.|
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I  191 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRA  191 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC--CCEE
Confidence            33333344678899999977766654332 2  35555665443333333334566899999988888776432  6789


Q ss_pred             EEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcC
Q psy519          161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV  231 (351)
Q Consensus       161 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  231 (351)
                      ...|+........+.+.. ....+++. ++.+..+-...+.|...|..+++.+..+..........+...+
T Consensus       192 ~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            999986554433343333 34578776 4445555556788999999888877666433334444555543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.16  E-value=0.00058  Score=60.13  Aligned_cols=242  Identities=12%  Similarity=0.040  Sum_probs=139.1

Q ss_pred             cEEEEecCCCceEEEecCCc-------cC--CCccceEEEEECCCCcEEEEe------CCCcEEEEeCCCCeeeEEeeCC
Q psy519           26 DVLANLESQKNLQSRYLPYY-------TS--GHDMTVWSVEACSKGLALTGS------RDTTARLWSLEQMYPLRIFVGH   90 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-------~~--~~~~~i~~~~~~~~~~~~~~~------~d~~i~vw~~~~~~~~~~~~~~   90 (351)
                      ..|+.++.++.+.-.|..++       ..  .....++..-...++.++.+.      ..|.|+-+|+.+|+.+..+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            34556667777766666655       00  000111111011134554444      3678999999999988765422


Q ss_pred             C-------------------------------------CCe-EEEEEeCCCCEEEEEeC----------------CCcEE
Q psy519           91 K-------------------------------------QDV-TCARFHPKITYIGTGSY----------------DKAVR  116 (351)
Q Consensus        91 ~-------------------------------------~~i-~~i~~~~~~~~l~~~~~----------------dg~i~  116 (351)
                      .                                     ..+ ...++.++...++.+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                     111 12456666666655543                24678


Q ss_pred             EEeCCCCceeEEeccCCC---------CeEEEEEccCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCC------
Q psy519          117 LWSITDGASVRVFSDHVS---------PVLSIAFSPCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHV------  178 (351)
Q Consensus       117 i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------  178 (351)
                      -.|+++++.+..++....         +........+++   .++.++.   +|.+.++|..+++.+...+...      
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k---~G~l~vlDr~tG~~i~~~~~~~~~~~~~  352 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDR---NGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECT---TSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccc---cceEEEEecCCCcEeeeeccCCcccccc
Confidence            889999998876653221         112222233444   3455555   9999999999988764321100      


Q ss_pred             -------CC--------------------------EEEEEECCCCcEEEEEcCC--------------------------
Q psy519          179 -------SP--------------------------VLSIAFSPCGKYLASGGED--------------------------  199 (351)
Q Consensus       179 -------~~--------------------------i~~~~~~~~~~~l~~~~~d--------------------------  199 (351)
                             .+                          -...+++|+...+++...+                          
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (571)
T d2ad6a1         353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeec
Confidence                   00                          0124667766665543322                          


Q ss_pred             -----------CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------
Q psy519          200 -----------GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYP------  262 (351)
Q Consensus       200 -----------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------  262 (351)
                                 |.+.-+|+++++.+-+......  ..+-.....+.++++|+.||.++.+|.++|+.+-.....      
T Consensus       433 ~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~--~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~  510 (571)
T d2ad6a1         433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             cccCCcccCCcccEEEeccCCCceeeEcCCCCC--CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence                       4577788888887765543221  111112224667888999999999999999998653332      


Q ss_pred             eeEEecCCce
Q psy519          263 RCAAQPVGFE  272 (351)
Q Consensus       263 ~~~~s~~~~~  272 (351)
                      .+.+..+|+.
T Consensus       511 P~ty~~dGkq  520 (571)
T d2ad6a1         511 PMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEETTEE
T ss_pred             ceEEEECCEE
Confidence            3566678864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.12  E-value=0.0006  Score=56.34  Aligned_cols=211  Identities=12%  Similarity=0.024  Sum_probs=129.0

Q ss_pred             ccEEEEec-CCCceEEEecCCc------cCCCccceEEEEECCCC--cEE-EEeCC------------------CcEEEE
Q psy519           25 EDVLANLE-SQKNLQSRYLPYY------TSGHDMTVWSVEACSKG--LAL-TGSRD------------------TTARLW   76 (351)
Q Consensus        25 ~~~l~~~~-~~~~i~i~~~~~~------~~~~~~~i~~~~~~~~~--~~~-~~~~d------------------~~i~vw   76 (351)
                      |++|+... .+++|.+-|+...      .......+..+...+++  .++ ..+.+                  +.+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            88887765 5788999999876      12233455666665443  453 33332                  336788


Q ss_pred             eCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---------------cE-----------------------EEE
Q psy519           77 SLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK---------------AV-----------------------RLW  118 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~i-----------------------~i~  118 (351)
                      |.++++......-. .....+.++++|+++++.+.+.               .+                       .+.
T Consensus       179 D~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         179 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            99988877666432 3466789999999998876431               12                       333


Q ss_pred             eCCCC---ceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCc-----------eeEEeccCCCCEEEE
Q psy519          119 SITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-----------SVRVFSDHVSPVLSI  184 (351)
Q Consensus       119 d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~i~~~  184 (351)
                      |.+..   ..+..+. -......+..+|||+++++++.-  +..+.++|++.-.           .+..-....-....-
T Consensus       258 D~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKL--s~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         258 DGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             ECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             cccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCc--CCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            33221   1111221 12234578999999999988763  8999999996421           111111223344567


Q ss_pred             EECCCCcEEEEEcCCCeEEEEEcCCC----------cEEEEeeccCCCCEEEEE------EcCCCCEEEEEeC
Q psy519          185 AFSPCGKYLASGGEDGLVLTHELTTG----------RVISRFHLQEHEPVTSLV------WSVTGETLVTGSL  241 (351)
Q Consensus       185 ~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~  241 (351)
                      +|...|.-..+.--|.+|.-|++...          ..+.++..  +-.+-.+.      ..|+|++|++...
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v--~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceecccc--ccCCCCCccCcCCcCCCCCCEEEEecc
Confidence            89888865556667999999998432          34444432  22333332      3578999988763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.0023  Score=50.14  Aligned_cols=218  Identities=8%  Similarity=-0.050  Sum_probs=132.8

Q ss_pred             ceEEEecCCc----cCCCccceEEEEECCCCcE--EEEeCCCcEEEEeCCCCe----eeEEeeCCCCCeEEEEEeCCCCE
Q psy519           36 NLQSRYLPYY----TSGHDMTVWSVEACSKGLA--LTGSRDTTARLWSLEQMY----PLRIFVGHKQDVTCARFHPKITY  105 (351)
Q Consensus        36 ~i~i~~~~~~----~~~~~~~i~~~~~~~~~~~--~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~  105 (351)
                      .|+-.+++..    .......+.+++|.+.+..  .+-...+.|...++....    ....+......+.++++.+.+..
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            4777777665    2223445678899876644  444456677776665321    12222233345678898875555


Q ss_pred             EEE-EeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEE
Q psy519          106 IGT-GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI  184 (351)
Q Consensus       106 l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  184 (351)
                      |+. -...+.|.+.++..................++++|...+++....+ ..+.|.-.++............-.....+
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCceecccccccceeeEE
Confidence            544 4556789999988666555555555678999999977777665431 14567777775544433333344567899


Q ss_pred             EECCCCcEEEEE-cCCCeEEEEEcCCCcEEEEeeccC-CCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q psy519          185 AFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQE-HEPVTSLVWSVTGETLVTG-SLTGTVQFYGWPSASKI  256 (351)
Q Consensus       185 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~  256 (351)
                      ++.+.++.|+.+ ...+.|...++............. .....++++.  +..|... ..++.|.-.+..+++..
T Consensus       170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence            999877666655 567889988986544333222222 2346677776  3445444 45678888877766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.0031  Score=49.42  Aligned_cols=203  Identities=9%  Similarity=0.004  Sum_probs=126.6

Q ss_pred             CccceEEeeecCCccccEEEEec-CCCceEEEecCCc---------cCCCccceEEEEECCCC-cE-EEEeCCCcEEEEe
Q psy519           10 DHKHFIQNSFKPETVEDVLANLE-SQKNLQSRYLPYY---------TSGHDMTVWSVEACSKG-LA-LTGSRDTTARLWS   77 (351)
Q Consensus        10 ~~~~v~~~~~sp~~~~~~l~~~~-~~~~i~i~~~~~~---------~~~~~~~i~~~~~~~~~-~~-~~~~~d~~i~vw~   77 (351)
                      +...+.+++|.+.  ++.|.... ..+.|.-.+++..         .......+..+++...+ .+ .+-...+.|.+.+
T Consensus        28 ~~~~~~~id~d~~--~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          28 NLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             SCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEEEeC--CCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEe
Confidence            3456778999988  77666553 4556666655432         11222345566765433 33 7767788999999


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCC
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGS--YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS  155 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  155 (351)
                      +........+.........++.+|...+++...  ..+.|.-.++............-....++++++.++.|+.+... 
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-  184 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-  184 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-
T ss_pred             cCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC-
Confidence            987665555555566788999999666665543  33567777776444433333344567899999988887776442 


Q ss_pred             CCCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEee
Q psy519          156 YDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH  217 (351)
Q Consensus       156 ~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  217 (351)
                       .+.|...|+...........  .......+++. ++.+..+-..++.|...+..+++....+.
T Consensus       185 -~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         185 -LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             -TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             -cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence             67899999865443333322  22345677776 34445555567788888877776555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.89  E-value=0.0044  Score=51.20  Aligned_cols=259  Identities=13%  Similarity=-0.017  Sum_probs=139.3

Q ss_pred             EEeeecCCccccEEEEecCCC-----------ceEEEecCCc--------cCCCccceEEEEECCCCcE-EEEeCC-CcE
Q psy519           15 IQNSFKPETVEDVLANLESQK-----------NLQSRYLPYY--------TSGHDMTVWSVEACSKGLA-LTGSRD-TTA   73 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~~~-----------~i~i~~~~~~--------~~~~~~~i~~~~~~~~~~~-~~~~~d-~~i   73 (351)
                      ...+...+  |+.++.|+.+.           .+.+||..+.        ...+.......++.++|++ +.|+.+ ..+
T Consensus        23 ~~a~~~~~--gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          23 AAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             EEEEEeeC--CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            33444557  88888877421           2678998876        1223333345678899988 555544 589


Q ss_pred             EEEeCCCCeeeEEeeC-CCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeEEecc---------C-----
Q psy519           74 RLWSLEQMYPLRIFVG-HKQDVTCARFHPKITYIGTGSYD------KAVRLWSITDGASVRVFSD---------H-----  132 (351)
Q Consensus        74 ~vw~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---------~-----  132 (351)
                      .+||..+.+-...-.. ....-...+..+|++.++.++.+      ..+.+||..+.+....-..         +     
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            9999987654322111 11122356677899999888753      3689999987654322110         0     


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec--c----CC--CCEEEEEE-CCCCcEEEEEcCCC---
Q psy519          133 VSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS--D----HV--SPVLSIAF-SPCGKYLASGGEDG---  200 (351)
Q Consensus       133 ~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~--~----~~--~~i~~~~~-~~~~~~l~~~~~dg---  200 (351)
                      ...-..+..-++|+.+..+..   .+.+..+|..+........  .    +.  ..-..+.+ ..+++.++.|+...   
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~  257 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPS---TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  257 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSS---SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             ccceeEEEEeCCCCEEEecCc---CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCC
Confidence            000111233456777777665   6777777776654322110  0    00  01122222 23677777775321   


Q ss_pred             -----eEEEEEcCCC---cEEEEee--ccCCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEEeCCCCceeee-
Q psy519          201 -----LVLTHELTTG---RVISRFH--LQEHEPVTSLVWSVTGETLVTGSLT-----------GTVQFYGWPSASKIGI-  258 (351)
Q Consensus       201 -----~i~i~d~~~~---~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~-  258 (351)
                           ...+.++...   .......  ......-.+....+++++++.|+.+           ..+.+||..+.+-... 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         258 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence                 2333333221   1111110  0111122355666899999988743           1578899877653332 


Q ss_pred             -ee----ccee-EEecCCceeeeeec
Q psy519          259 -GV----YPRC-AAQPVGFEAATLAA  278 (351)
Q Consensus       259 -~~----~~~~-~~s~~~~~~~~~~~  278 (351)
                       ..    .++. .+.+||+.++.++.
T Consensus       338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         338 PNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEEECCCCEEEEEeCC
Confidence             11    1233 35678888877764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.88  E-value=0.0031  Score=55.23  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=121.3

Q ss_pred             CCcEEEEeCCCCeeeEEeeCCC------------------------------CCe-EEEEEeCCCCEEEEEeC-------
Q psy519           70 DTTARLWSLEQMYPLRIFVGHK------------------------------QDV-TCARFHPKITYIGTGSY-------  111 (351)
Q Consensus        70 d~~i~vw~~~~~~~~~~~~~~~------------------------------~~i-~~i~~~~~~~~l~~~~~-------  111 (351)
                      .|.|.-+|.++++.+..+..-.                              ..+ ..+++.+...+++.+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            3679999999999887764210                              011 12456666666654321       


Q ss_pred             ------------CCcEEEEeCCCCceeEEeccCCCC---------eEEEEEccCCC---EEEEEecCCCCCeEEEEEccC
Q psy519          112 ------------DKAVRLWSITDGASVRVFSDHVSP---------VLSIAFSPCGK---YLASGGTGSYDKAVRLWSITD  167 (351)
Q Consensus       112 ------------dg~i~i~d~~~~~~~~~~~~~~~~---------i~~~~~~~~~~---~l~~~~~~~~d~~i~i~d~~~  167 (351)
                                  ...|.-.|+++++....++.....         ..-+....+++   .++.+..   +|.+.++|..+
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k---~G~~~~lDr~t  333 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPK---NGFFYVLDRTN  333 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT---TSEEEEEETTT
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCc---cceEEEEecCC
Confidence                        245778899999887665432211         11122222443   4555555   99999999999


Q ss_pred             CceeEEeccCC------------------------CC------------EEEEEECCCCcEEEEEcC-------------
Q psy519          168 GASVRVFSDHV------------------------SP------------VLSIAFSPCGKYLASGGE-------------  198 (351)
Q Consensus       168 ~~~~~~~~~~~------------------------~~------------i~~~~~~~~~~~l~~~~~-------------  198 (351)
                      ++.+...+...                        ..            -...+++|+..++++...             
T Consensus       334 G~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~  413 (560)
T d1kv9a2         334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDF  413 (560)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGC
T ss_pred             CcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccc
Confidence            98765432110                        00            013456676666654332             


Q ss_pred             -----------------------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy519          199 -----------------------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK  255 (351)
Q Consensus       199 -----------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  255 (351)
                                             .|.+.-+|+.+++.+-++.....  ..+-.+.-.+.++++|+.||.++.+|.++|+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~--~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCC--CCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence                                   25678889999988876654332  22222334577888899999999999999999


Q ss_pred             eeeeecc------eeEEecCCce
Q psy519          256 IGIGVYP------RCAAQPVGFE  272 (351)
Q Consensus       256 ~~~~~~~------~~~~s~~~~~  272 (351)
                      +-.....      -+.+..+|+.
T Consensus       492 LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         492 LWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEE
T ss_pred             eEEEECCCCccccCEEEEECCEE
Confidence            8653332      3566677764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.88  E-value=0.0071  Score=53.25  Aligned_cols=242  Identities=12%  Similarity=0.022  Sum_probs=138.9

Q ss_pred             cEEEEecCCCceEEEecCCc-----cC-C--C-ccceEEEEECCCCcEEEEeC------CCcEEEEeCCCCeeeEEeeCC
Q psy519           26 DVLANLESQKNLQSRYLPYY-----TS-G--H-DMTVWSVEACSKGLALTGSR------DTTARLWSLEQMYPLRIFVGH   90 (351)
Q Consensus        26 ~~l~~~~~~~~i~i~~~~~~-----~~-~--~-~~~i~~~~~~~~~~~~~~~~------d~~i~vw~~~~~~~~~~~~~~   90 (351)
                      .+++.++.|+.+.-.|..++     .. .  + ...++.--..-++.++.+..      .|.|+-+|+++|+.+..+...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            35667777777776676655     00 0  0 01111100011345555432      488999999999998776421


Q ss_pred             C-------------------------------------CCe-EEEEEeCCCCEEEEEeC----------------CCcEE
Q psy519           91 K-------------------------------------QDV-TCARFHPKITYIGTGSY----------------DKAVR  116 (351)
Q Consensus        91 ~-------------------------------------~~i-~~i~~~~~~~~l~~~~~----------------dg~i~  116 (351)
                      .                                     ..+ ..+.+.+...+++.+..                ...+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            1                                     001 13455666666655532                23578


Q ss_pred             EEeCCCCceeEEeccCC---------CCeEEEEE-ccCCC---EEEEEecCCCCCeEEEEEccCCceeEEeccCC-----
Q psy519          117 LWSITDGASVRVFSDHV---------SPVLSIAF-SPCGK---YLASGGTGSYDKAVRLWSITDGASVRVFSDHV-----  178 (351)
Q Consensus       117 i~d~~~~~~~~~~~~~~---------~~i~~~~~-~~~~~---~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----  178 (351)
                      -.|+++++.+..++...         ....-+.. ..+|+   .++....   +|.+.++|..+++.+...+...     
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k---~G~~~vlDr~tG~~i~~~~~~~~~~~~  358 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR---NGIVYTLDRTDGALVSANKLDDTVNVF  358 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT---TSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceecccc---ccceeeecCCCCceeeecccccccccc
Confidence            88999999877664311         12222222 23443   4566666   9999999999988765432100     


Q ss_pred             --------CC--------------------------EEEEEECCCCcEEEEEcC--------------------------
Q psy519          179 --------SP--------------------------VLSIAFSPCGKYLASGGE--------------------------  198 (351)
Q Consensus       179 --------~~--------------------------i~~~~~~~~~~~l~~~~~--------------------------  198 (351)
                              .+                          -..++++|+..+++....                          
T Consensus       359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (596)
T d1w6sa_         359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (596)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence                    00                          012355555555443321                          


Q ss_pred             -------------CCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec----
Q psy519          199 -------------DGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY----  261 (351)
Q Consensus       199 -------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~----  261 (351)
                                   -|.+.-||+.+++..-+....  .+..+-.++..+.+++.|+.||.++.+|.++|+.+-....    
T Consensus       439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~--~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~  516 (596)
T d1w6sa_         439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (596)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccCcccCcccCCCcceEEEEeCCCCceecccCCC--CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence                         146778888888776554322  2222222334577888899999999999999999965433    


Q ss_pred             --ceeEEecCCce
Q psy519          262 --PRCAAQPVGFE  272 (351)
Q Consensus       262 --~~~~~s~~~~~  272 (351)
                        .-+.+..+|+.
T Consensus       517 ~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         517 IGYPMTYTHKGTQ  529 (596)
T ss_dssp             CSCCEEEEETTEE
T ss_pred             ccCCeEEEECCEE
Confidence              23667778864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=0.0037  Score=48.90  Aligned_cols=224  Identities=13%  Similarity=0.146  Sum_probs=144.8

Q ss_pred             CCceEEEecCCcc--CCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy519           34 QKNLQSRYLPYYT--SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY  111 (351)
Q Consensus        34 ~~~i~i~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  111 (351)
                      ..++.+.|+....  ....-.--+.-.+|..+.++--...++.++|+++.+.++.+.-. ++|.--.|-.+ +.|+..+ 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-  120 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-  120 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-
T ss_pred             CceEEEEECCCCCcceecccchhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-
Confidence            3467888887651  11111222345678887743333678999999999988887644 46666677644 4555544 


Q ss_pred             CCcEEEEeCCCC-ceeEEeccC----CCCeEEEEEccCCCEEEEEecCC----CCCeEEEEEccCCceeEEeccCCCCEE
Q psy519          112 DKAVRLWSITDG-ASVRVFSDH----VSPVLSIAFSPCGKYLASGGTGS----YDKAVRLWSITDGASVRVFSDHVSPVL  182 (351)
Q Consensus       112 dg~i~i~d~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~i~  182 (351)
                      +..|+-|+++.. .+.+.+..|    ...|-.-..+++.++++..+-..    -.|.+.+|..+. +.-+.+++|.....
T Consensus       121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~  199 (327)
T d1utca2         121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA  199 (327)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEE
T ss_pred             CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeE
Confidence            567999999542 455666544    35788888899999988765322    247789999754 44566777765544


Q ss_pred             EEEECCCC---cEEEEE---cCCCeEEEEEcCCCc--------EEEEeeccC---CCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          183 SIAFSPCG---KYLASG---GEDGLVLTHELTTGR--------VISRFHLQE---HEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       183 ~~~~~~~~---~~l~~~---~~dg~i~i~d~~~~~--------~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      .+.+..+.   +.++.+   ...+.+.+.++....        ....+..+.   ..-..++..++....+..-+.-|.+
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence            44433211   233332   234678888886421        111222222   2457789999988899999999999


Q ss_pred             EEEeCCCCceeeeeec
Q psy519          246 QFYGWPSASKIGIGVY  261 (351)
Q Consensus       246 ~i~~~~~~~~~~~~~~  261 (351)
                      ++||++++..+...++
T Consensus       280 ~lyDleTgt~i~~nRI  295 (327)
T d1utca2         280 HLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             EEEEcccccEEEEeec
Confidence            9999999998877655

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.0038  Score=48.80  Aligned_cols=226  Identities=14%  Similarity=0.098  Sum_probs=143.5

Q ss_pred             EeeecCCccccEEEEecCCCceEEEecCCc--cCC--CccceEEEEECCCCcEEEEeCCCcEEEEeCCC-CeeeEEeeCC
Q psy519           16 QNSFKPETVEDVLANLESQKNLQSRYLPYY--TSG--HDMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGH   90 (351)
Q Consensus        16 ~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~   90 (351)
                      +.-.+|.  .+.||.-+ ...++++|++..  +..  ....|.--.|-.+..++... +..|+-|+++. ..+.+.+..|
T Consensus        67 sAIMhP~--~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSS--SSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCC--CcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            3567788  88887765 568999999887  222  34566667888877773332 36799999953 3466666555


Q ss_pred             C----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCceeEEeccCCCCeEEEEEccC---CCEEEEEecCCC
Q psy519           91 K----QDVTCARFHPKITYIGTGSY-------DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC---GKYLASGGTGSY  156 (351)
Q Consensus        91 ~----~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~  156 (351)
                      .    ..|..-..+++.+.++..+-       .|.+.+|..+.+ .-+.+.+|......+.+.-+   .+.++.+..+..
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            3    46767777888887765432       377899997643 45566666444333333211   124444443333


Q ss_pred             CCeEEEEEccCCc--------eeEEec----cCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          157 DKAVRLWSITDGA--------SVRVFS----DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       157 d~~i~i~d~~~~~--------~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                      .+.+++.++....        ....+.    ....-..++..++.-..++.-+.-|.+++||+.++.++..-+... ..|
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~-~~i  300 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETI  300 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCC-Cce
Confidence            5789999986521        111111    123345678888877888888999999999999999998776543 455


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEE
Q psy519          225 TSLVWSVTGETLVTGSLTGTVQF  247 (351)
Q Consensus       225 ~~~~~~~~~~~l~~~~~dg~i~i  247 (351)
                      -..+-+.+..-+++...+|.|.-
T Consensus       301 F~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         301 FVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEeccCCCCceEEEECCCCeEEE
Confidence            54444444444555557777653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=0.0099  Score=50.07  Aligned_cols=249  Identities=11%  Similarity=0.035  Sum_probs=137.4

Q ss_pred             CCCCcCCCCccceEEeeecCCccccEEEEec-----CCCceEEEecCCc--cCCC--ccceEEEEECCCCcE-EEEeC--
Q psy519            2 DLSHLNHGDHKHFIQNSFKPETVEDVLANLE-----SQKNLQSRYLPYY--TSGH--DMTVWSVEACSKGLA-LTGSR--   69 (351)
Q Consensus         2 ~~~~~~~~~~~~v~~~~~sp~~~~~~l~~~~-----~~~~i~i~~~~~~--~~~~--~~~i~~~~~~~~~~~-~~~~~--   69 (351)
                      |.-.+..++.-.+....+||+  ++++|.+-     ....++++|+.++  ....  ......++|.+++.. +-...  
T Consensus       115 D~n~la~~~~~~~~~~~~Spd--~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~  192 (430)
T d1qfma1         115 DPNILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQ  192 (430)
T ss_dssp             CGGGGCSSSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCC
T ss_pred             chhhhcccccceecceEecCC--CCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEecc
Confidence            344556666666677899999  99988642     2347899999987  1111  111246889999875 32221  


Q ss_pred             --------------CCcEEEEeCCCCee--eEEeeCCC--CCeEEEEEeCCCCEEEEEeC---CCc--EEEEeCCCCc--
Q psy519           70 --------------DTTARLWSLEQMYP--LRIFVGHK--QDVTCARFHPKITYIGTGSY---DKA--VRLWSITDGA--  124 (351)
Q Consensus        70 --------------d~~i~vw~~~~~~~--~~~~~~~~--~~i~~i~~~~~~~~l~~~~~---dg~--i~i~d~~~~~--  124 (351)
                                    ...+..|.+.+...  ...+....  ..+..+..++++++++....   +..  +.+.|+....  
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                          23577888776532  23333333  34566778889998764332   233  4444543321  


Q ss_pred             ------eeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCce--eEE-eccCCCCEEEEEECCCCcEEEE
Q psy519          125 ------SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS--VRV-FSDHVSPVLSIAFSPCGKYLAS  195 (351)
Q Consensus       125 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~--~~~-~~~~~~~i~~~~~~~~~~~l~~  195 (351)
                            .............- .-+.++.+++.......++.|...++.....  ... +..+...+..-.+...+.+|+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl  351 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cccccceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEE
Confidence                  11222222333332 2233444555544433467788888776432  122 3334444543334334455554


Q ss_pred             E-cCCC--eEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE--eC--CCeEEEEeCCCCc
Q psy519          196 G-GEDG--LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG--SL--TGTVQFYGWPSAS  254 (351)
Q Consensus       196 ~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~--dg~i~i~~~~~~~  254 (351)
                      . ..++  .|+++++.++...... ......+..+...++...+...  +.  -.++.-+|+.+++
T Consensus       352 ~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         352 CYLHDVKNTLQLHDLATGALLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEcCCEeEEEEEECCCCcEEEec-CCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            4 4454  5888999877765443 3344556666655655544332  21  3789999998874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.61  E-value=0.0021  Score=56.30  Aligned_cols=169  Identities=11%  Similarity=0.046  Sum_probs=103.6

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCCCe---------EEEEEeCCC---CEEEEEeCCCcEEEEeCCCCceeEEeccCC-----
Q psy519           71 TTARLWSLEQMYPLRIFVGHKQDV---------TCARFHPKI---TYIGTGSYDKAVRLWSITDGASVRVFSDHV-----  133 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~~~~~~~~i---------~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  133 (351)
                      ..|.-.|+++++.+..++.....+         .-+....++   ..++.+..+|.++++|..+++.+.......     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            457777889998887776432222         112222234   356778889999999999998765432100     


Q ss_pred             -------------------C------------CeEEEEEccCCCEEEEEecC----------------------------
Q psy519          134 -------------------S------------PVLSIAFSPCGKYLASGGTG----------------------------  154 (351)
Q Consensus       134 -------------------~------------~i~~~~~~~~~~~l~~~~~~----------------------------  154 (351)
                                         .            .-...+++|+...++.....                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                               0            00135677777666654320                            


Q ss_pred             -----CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEE
Q psy519          155 -----SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVW  229 (351)
Q Consensus       155 -----~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  229 (351)
                           ...|.|.-+|+.+++.+-+..... +...-.+.-.+.++++|+.||.++.+|.++|+.+-++.......-.-+.|
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty  508 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEE
Confidence                 012578889999998877654321 11111122246677789999999999999999998887654422222455


Q ss_pred             cCCCC-EEEEEe
Q psy519          230 SVTGE-TLVTGS  240 (351)
Q Consensus       230 ~~~~~-~l~~~~  240 (351)
                      ..+|+ +|++.+
T Consensus       509 ~~dGkqyv~v~a  520 (560)
T d1kv9a2         509 ELAGRQYVAIMA  520 (560)
T ss_dssp             EETTEEEEEEEE
T ss_pred             EECCEEEEEEEe
Confidence            56775 555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.56  E-value=0.014  Score=47.94  Aligned_cols=226  Identities=10%  Similarity=-0.006  Sum_probs=119.2

Q ss_pred             eEEeeecCCccccEEEEecCC-CceEEEecCCc------cCCCccceEEEEECCCCcE-EEEeCC------CcEEEEeCC
Q psy519           14 FIQNSFKPETVEDVLANLESQ-KNLQSRYLPYY------TSGHDMTVWSVEACSKGLA-LTGSRD------TTARLWSLE   79 (351)
Q Consensus        14 v~~~~~sp~~~~~~l~~~~~~-~~i~i~~~~~~------~~~~~~~i~~~~~~~~~~~-~~~~~d------~~i~vw~~~   79 (351)
                      ....++.++  |.+++.|+.+ ..+.+||..+.      .......-...+..+||++ +.++.+      ..+.+||..
T Consensus        78 ~~~~~~~~~--g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          78 CPGISMDGN--GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             SCEEEECTT--SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eeEEEEecC--CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            345678899  9999988655 58999998776      1111112234566778888 666542      468999998


Q ss_pred             CCeeeEEee---------CCC-----CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc------CC--CCeE
Q psy519           80 QMYPLRIFV---------GHK-----QDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD------HV--SPVL  137 (351)
Q Consensus        80 ~~~~~~~~~---------~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~--~~i~  137 (351)
                      +.+-...-.         .+.     ..-..+...++++.+..+...+.+.+++..+.........      ..  ..-.
T Consensus       156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (387)
T d1k3ia3         156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  235 (387)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence            765322100         000     0011122345677777777777788888776653322110      01  1112


Q ss_pred             EEEE-ccCCCEEEEEecCCC-----CCeEEEEEccCC---ceeEE-ecc--CCCCEEEEEECCCCcEEEEEcCC------
Q psy519          138 SIAF-SPCGKYLASGGTGSY-----DKAVRLWSITDG---ASVRV-FSD--HVSPVLSIAFSPCGKYLASGGED------  199 (351)
Q Consensus       138 ~~~~-~~~~~~l~~~~~~~~-----d~~i~i~d~~~~---~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~d------  199 (351)
                      ++.+ ..+++.++.|+....     .....+.++...   ..... ...  ....-......+|+++++.|+.+      
T Consensus       236 ~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~  315 (387)
T d1k3ia3         236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  315 (387)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             EEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCC
Confidence            2323 335667777764211     113344443321   11111 110  11112245566899999988743      


Q ss_pred             -----CeEEEEEcCCCcEEEEeeccCCCCE-EEEEEcCCCCEEEEEeC
Q psy519          200 -----GLVLTHELTTGRVISRFHLQEHEPV-TSLVWSVTGETLVTGSL  241 (351)
Q Consensus       200 -----g~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~  241 (351)
                           ..+.+||..+.+-...-.......- ....+.+||++++.|+.
T Consensus       316 ~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         316 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                 1467899877653221111111111 23445789999999874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.54  E-value=0.023  Score=49.70  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec------ceeEEecCCce
Q psy519          200 GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY------PRCAAQPVGFE  272 (351)
Q Consensus       200 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~~~s~~~~~  272 (351)
                      |.+.-||+.+++.+-++....  +...=..+-.+.++++|+.||.++.+|.++|+.+-....      .-+.+..+|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC--CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            357778888887776654322  212112233678888999999999999999999865333      23566678874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.44  E-value=0.031  Score=48.90  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             CeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------eeEEecCCce-
Q psy519          200 GLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYP------RCAAQPVGFE-  272 (351)
Q Consensus       200 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~~s~~~~~-  272 (351)
                      |.+.-+|+.+++..-++....  ++.+-..+..+.++++|+.||.++.+|.++|+.+-.....      -+.+..+|+. 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            567888888888776665332  2222223346778888999999999999999999653332      3677788864 


Q ss_pred             eeee
Q psy519          273 AATL  276 (351)
Q Consensus       273 ~~~~  276 (351)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.40  E-value=0.0055  Score=53.80  Aligned_cols=167  Identities=10%  Similarity=0.016  Sum_probs=99.0

Q ss_pred             cEEEEeCCCCeeeEEeeCCCC---------CeEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCceeEEeccCC------
Q psy519           72 TARLWSLEQMYPLRIFVGHKQ---------DVTCARFHPKI---TYIGTGSYDKAVRLWSITDGASVRVFSDHV------  133 (351)
Q Consensus        72 ~i~vw~~~~~~~~~~~~~~~~---------~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------  133 (351)
                      .|.-.|+++++....++....         +........++   ..++.++.+|.++.+|..+++.+.......      
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            466677788877766553221         12222222233   356778889999999999998765432110      


Q ss_pred             -----------------------------CCeEEEEEccCCCEEEEEecC------------------------------
Q psy519          134 -----------------------------SPVLSIAFSPCGKYLASGGTG------------------------------  154 (351)
Q Consensus       134 -----------------------------~~i~~~~~~~~~~~l~~~~~~------------------------------  154 (351)
                                                   ..-..++++|+...++.....                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                         001124677776666553220                              


Q ss_pred             ----------CCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCE
Q psy519          155 ----------SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPV  224 (351)
Q Consensus       155 ----------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  224 (351)
                                ..-|.+.-||+.+++.+-+.+... +...-..+-.+.++++|+.||.++.+|.++|+.+-++.......-
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~  522 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA  522 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccc
Confidence                      001467788888888777664332 111111222577888899999999999999999988876543211


Q ss_pred             EEEEEcCCCC-EEEEE
Q psy519          225 TSLVWSVTGE-TLVTG  239 (351)
Q Consensus       225 ~~~~~~~~~~-~l~~~  239 (351)
                      .=+.|..+|+ ++++.
T Consensus       523 ~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         523 APSTYMVDGRQYVSVA  538 (573)
T ss_dssp             CCEEEEETTEEEEEEE
T ss_pred             cCEEEEECCEEEEEEE
Confidence            1244555776 54443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.25  E-value=0.051  Score=47.33  Aligned_cols=154  Identities=13%  Similarity=0.064  Sum_probs=95.2

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEeeCCC----CCeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCCceeEEec
Q psy519           61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHK----QDVTCARFHPKITYIGTGS------YDKAVRLWSITDGASVRVFS  130 (351)
Q Consensus        61 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  130 (351)
                      +++++.++.|+.+.-.|.++++.........    ..++..-.-.++ .++.+.      .+|.|+-+|+++|+.+..+.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            4567888899999999999999876654221    111111011133 344444      36789999999999887653


Q ss_pred             cCC-------------------------------------CCe-EEEEEccCCCEEEEEecCC-------------CCCe
Q psy519          131 DHV-------------------------------------SPV-LSIAFSPCGKYLASGGTGS-------------YDKA  159 (351)
Q Consensus       131 ~~~-------------------------------------~~i-~~~~~~~~~~~l~~~~~~~-------------~d~~  159 (351)
                      ...                                     ..+ ...++++....++.+....             +...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            210                                     111 2346667666666554310             1356


Q ss_pred             EEEEEccCCceeEEeccCCC---------CEEEEEECCCCc---EEEEEcCCCeEEEEEcCCCcEEEE
Q psy519          160 VRLWSITDGASVRVFSDHVS---------PVLSIAFSPCGK---YLASGGEDGLVLTHELTTGRVISR  215 (351)
Q Consensus       160 i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~  215 (351)
                      +.-.|.++++.+-.++....         +........+++   .++..+.+|.++++|..+++.+..
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            88889999998877654221         112222222443   567788999999999999987754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.026  Score=49.49  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             CCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEEEEcCCCC-E
Q psy519          157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGE-T  235 (351)
Q Consensus       157 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  235 (351)
                      .|.|.-+|+.+++.+-+...+. ++..-..+..+.++++|+.||.++.+|.++|+.+-++.......-.-+.|..+|+ +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4779999999998887765432 2221112235677888999999999999999999888765543222356667785 5


Q ss_pred             EEEE
Q psy519          236 LVTG  239 (351)
Q Consensus       236 l~~~  239 (351)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.97  E-value=0.064  Score=43.25  Aligned_cols=159  Identities=9%  Similarity=0.045  Sum_probs=92.1

Q ss_pred             eEEEEEeCCCCEEEEEeC------------CCcEEEEeCCCCceeE-Ee--ccC-----CCCeEEEEE--ccCCCE-EEE
Q psy519           94 VTCARFHPKITYIGTGSY------------DKAVRLWSITDGASVR-VF--SDH-----VSPVLSIAF--SPCGKY-LAS  150 (351)
Q Consensus        94 i~~i~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~-~~--~~~-----~~~i~~~~~--~~~~~~-l~~  150 (351)
                      .-.|...|+|..+++++.            .|.+.++|+.+.+... .+  .+.     .-....+.+  .++|.. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345777888877666542            4899999987654321 11  111     112344444  445653 444


Q ss_pred             EecCCCCCeEEEEEccCCce-e---EEec-cCCCCEEEEEECCCCcEEEEEc-----------------CCCeEEEEEcC
Q psy519          151 GGTGSYDKAVRLWSITDGAS-V---RVFS-DHVSPVLSIAFSPCGKYLASGG-----------------EDGLVLTHELT  208 (351)
Q Consensus       151 ~~~~~~d~~i~i~d~~~~~~-~---~~~~-~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~  208 (351)
                      ........+|.+|++..... +   ..+. ........+++..++.++++-.                 ..+.+..||. 
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-
Confidence            43212267899998865432 1   1221 1224578888888898888732                 1233444443 


Q ss_pred             CCcEEEEeeccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q psy519          209 TGRVISRFHLQEHEPVTSLVWSVTGETLVTG-SLTGTVQFYGWPSASKI  256 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~  256 (351)
                       ++. ... ...-...+.++++||+++|+++ +..++|+.|++.....+
T Consensus       196 -~~~-~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         196 -NDV-RVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             -SCE-EEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             -Cce-EEE-cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence             332 211 1223568999999999877665 44789999998765433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.039  Score=45.04  Aligned_cols=174  Identities=8%  Similarity=-0.025  Sum_probs=101.0

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc--------------cCCCccceEEEEECCCCcEEEEeCCCcEEEEe
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY--------------TSGHDMTVWSVEACSKGLALTGSRDTTARLWS   77 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~--------------~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~   77 (351)
                      ....-++.++.  ..++++|+.++ +.|..+...              ....-..|..++|+.+  .++...++.+.+++
T Consensus        37 ~~~~LLAVsn~--~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNS--KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETT--TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESSEEEEEE
T ss_pred             cccceEEEeCC--CCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCCCEEEEE
Confidence            34556788888  77888877765 556654332              0011124788888755  33334556788888


Q ss_pred             CCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEecc-----CCCCeEEEEEccCCCEEEEEe
Q psy519           78 LEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-----HVSPVLSIAFSPCGKYLASGG  152 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~  152 (351)
                      ...-...........++..+.++|.  .++....++.+.++++..++......+     -...+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7764444444444567888888875  455566789999999988764332211     235577777777777776653


Q ss_pred             cCCCCCeEEEE-EccCCceeEEeccCCCCEEEEEECCCCcEEEEE
Q psy519          153 TGSYDKAVRLW-SITDGASVRVFSDHVSPVLSIAFSPCGKYLASG  196 (351)
Q Consensus       153 ~~~~d~~i~i~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  196 (351)
                          .+...+- ++.....+.........+.++.|-.+..++++-
T Consensus       190 ----g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 ----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ----CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence                2222211 111111110001233467889998766666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.82  E-value=0.14  Score=44.80  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=95.2

Q ss_pred             EEEEeCCCcEEEEeCCCCeeeEEeeCCCCCe-EEEEEeC--CCCEEEEEeC------CCcEEEEeCCCCceeEEeccCC-
Q psy519           64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDV-TCARFHP--KITYIGTGSY------DKAVRLWSITDGASVRVFSDHV-  133 (351)
Q Consensus        64 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i-~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-  133 (351)
                      ++.+..|+.|.-.|.++++.+..+....... ..+.-.|  -+..++++..      .|.|+-+|+++|+.+..+.... 
T Consensus       124 v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~  203 (596)
T d1w6sa_         124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (596)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCC
Confidence            4788889999999999999988775321100 0111111  1334555542      4899999999999887653210 


Q ss_pred             -------------------------------------CCeEEEEEccCCCEEEEEecCC-------------CCCeEEEE
Q psy519          134 -------------------------------------SPVLSIAFSPCGKYLASGGTGS-------------YDKAVRLW  163 (351)
Q Consensus       134 -------------------------------------~~i~~~~~~~~~~~l~~~~~~~-------------~d~~i~i~  163 (351)
                                                           ..-..+.+.+...+++.+....             +...+.-.
T Consensus       204 ~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAl  283 (596)
T d1w6sa_         204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (596)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccc
Confidence                                                 0112346667666666653211             13568888


Q ss_pred             EccCCceeEEecc--CC-------CCEEEEEE-CCCC---cEEEEEcCCCeEEEEEcCCCcEEEEe
Q psy519          164 SITDGASVRVFSD--HV-------SPVLSIAF-SPCG---KYLASGGEDGLVLTHELTTGRVISRF  216 (351)
Q Consensus       164 d~~~~~~~~~~~~--~~-------~~i~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  216 (351)
                      |+++++.+-.++.  |.       .....+.. ..+|   +.++....+|.+.++|..+++.+...
T Consensus       284 D~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            9999998776643  21       11222222 2344   36778889999999999999877543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.78  E-value=0.11  Score=43.26  Aligned_cols=218  Identities=10%  Similarity=0.042  Sum_probs=117.7

Q ss_pred             EEecCCccCCCccceEEEEECCCCcE--EEEeCC----CcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy519           39 SRYLPYYTSGHDMTVWSVEACSKGLA--LTGSRD----TTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD  112 (351)
Q Consensus        39 i~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  112 (351)
                      +.|.+....++.-.+....++|++++  ++-+.+    ..++++|+.+++.+...- .......+.|.+|++.|+....+
T Consensus       113 llD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~  191 (430)
T d1qfma1         113 FLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYP  191 (430)
T ss_dssp             EECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECC
T ss_pred             ecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEec
Confidence            34433334445555567788999987  333333    459999999998764221 11223568899999987654432


Q ss_pred             ----------------CcEEEEeCCCCce--eEEecc--CCCCeEEEEEccCCCEEEEEecCCCCCe--EEEEEccCCc-
Q psy519          113 ----------------KAVRLWSITDGAS--VRVFSD--HVSPVLSIAFSPCGKYLASGGTGSYDKA--VRLWSITDGA-  169 (351)
Q Consensus       113 ----------------g~i~i~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~d~~--i~i~d~~~~~-  169 (351)
                                      ..+..+.+.+...  ...+..  ....+..+..++++++++.......+..  +.+.|+.... 
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~  271 (430)
T d1qfma1         192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (430)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             cccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccc
Confidence                            2578888776543  233332  2334667788999999875433222333  4555654321 


Q ss_pred             -------eeEEeccCCCCEEEEEECCCCcEEEEEc---CCCeEEEEEcCCCcE--EEEeeccCCCCEEEEEEcCCCCEEE
Q psy519          170 -------SVRVFSDHVSPVLSIAFSPCGKYLASGG---EDGLVLTHELTTGRV--ISRFHLQEHEPVTSLVWSVTGETLV  237 (351)
Q Consensus       170 -------~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~  237 (351)
                             .............-+. +.++.+++...   .++.|...++.+...  ...+-.++...+..-.+...+.+|+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         272 GITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence                   1122222233333332 22333444333   246677777765432  1223223334454444444555665


Q ss_pred             EE-eCCC--eEEEEeCCCCceeee
Q psy519          238 TG-SLTG--TVQFYGWPSASKIGI  258 (351)
Q Consensus       238 ~~-~~dg--~i~i~~~~~~~~~~~  258 (351)
                      .. ..++  .|++++..++.....
T Consensus       351 l~~~~~~~~~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLATGALLKI  374 (430)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEE
T ss_pred             EEEEcCCEeEEEEEECCCCcEEEe
Confidence            54 3453  688999988765443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.32  E-value=0.19  Score=40.40  Aligned_cols=199  Identities=16%  Similarity=0.146  Sum_probs=114.0

Q ss_pred             EeeecCCcc-ccEEEEecCCCceEEEecCCc--cCCCccceEEEEEC------CCC-cEEEEe--CC--CcEEEEeCCC-
Q psy519           16 QNSFKPETV-EDVLANLESQKNLQSRYLPYY--TSGHDMTVWSVEAC------SKG-LALTGS--RD--TTARLWSLEQ-   80 (351)
Q Consensus        16 ~~~~sp~~~-~~~l~~~~~~~~i~i~~~~~~--~~~~~~~i~~~~~~------~~~-~~~~~~--~d--~~i~vw~~~~-   80 (351)
                      ++-++|.+. ..+++.....+-+++|+++..  ..-..+.++.+..-      ... .++.++  .+  .+|.+|.+.. 
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            344555321 456666666777999999766  11123455555432      122 123443  22  3577887742 


Q ss_pred             CeeeEEeeCC-------CCCeEEEEE--eCC-CC-EEEEEeCCCcEEEEeCC---CC----ceeEEeccCCCCeEEEEEc
Q psy519           81 MYPLRIFVGH-------KQDVTCARF--HPK-IT-YIGTGSYDKAVRLWSIT---DG----ASVRVFSDHVSPVLSIAFS  142 (351)
Q Consensus        81 ~~~~~~~~~~-------~~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~  142 (351)
                      ...+..+...       ...+..+++  ++. +. ++++...+|.+..|.+.   .+    +.++.+. ....+..+.++
T Consensus       110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvD  188 (353)
T d1h6la_         110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAAD  188 (353)
T ss_dssp             TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEE
T ss_pred             ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEe
Confidence            2223333211       123566666  554 44 45666778998888763   22    2344554 45789999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEccC-----CceeEEec--cCCCCEEEEEECC--CCc-EEEEE-cCCCeEEEEEcCCC-
Q psy519          143 PCGKYLASGGTGSYDKAVRLWSITD-----GASVRVFS--DHVSPVLSIAFSP--CGK-YLASG-GEDGLVLTHELTTG-  210 (351)
Q Consensus       143 ~~~~~l~~~~~~~~d~~i~i~d~~~-----~~~~~~~~--~~~~~i~~~~~~~--~~~-~l~~~-~~dg~i~i~d~~~~-  210 (351)
                      +..+.|+.+-+   +..+..++..-     +..+....  .....+..++.-.  ++. +|+++ -.++...+||.... 
T Consensus       189 de~~~LyisEE---~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         189 DEYGSLYIAEE---DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             TTTTEEEEEET---TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             CCCCcEEEecC---ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            99999999877   77676666542     12222221  2345677776543  333 54444 45788999998764 


Q ss_pred             cEEEEeec
Q psy519          211 RVISRFHL  218 (351)
Q Consensus       211 ~~~~~~~~  218 (351)
                      +.+..|.+
T Consensus       266 ~~~g~F~i  273 (353)
T d1h6la_         266 KYVADFQI  273 (353)
T ss_dssp             CEEEEEEE
T ss_pred             cccceEEE
Confidence            56666654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.88  E-value=0.32  Score=39.05  Aligned_cols=190  Identities=17%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             CcE-EEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeC------CCCEEEEEe-CC---CcEEEEeCCC-CceeEEe
Q psy519           62 GLA-LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP------KITYIGTGS-YD---KAVRLWSITD-GASVRVF  129 (351)
Q Consensus        62 ~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~------~~~~l~~~~-~d---g~i~i~d~~~-~~~~~~~  129 (351)
                      ..+ +.....+-|++||++ |+.+..+.  .+.+..+..-.      ...-+++++ ++   .+|.+|.+.. ...+..+
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            345 555666679999986 77776654  34555554431      222344444 22   3577787742 2233333


Q ss_pred             ccC-------CCCeEEEEE--ccC-CC-EEEEEecCCCCCeEEEEEccC---C----ceeEEeccCCCCEEEEEECCCCc
Q psy519          130 SDH-------VSPVLSIAF--SPC-GK-YLASGGTGSYDKAVRLWSITD---G----ASVRVFSDHVSPVLSIAFSPCGK  191 (351)
Q Consensus       130 ~~~-------~~~i~~~~~--~~~-~~-~l~~~~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~i~~~~~~~~~~  191 (351)
                      ...       ...++.+|+  ++. |. ++++...   +|.+..|.+..   +    +.++.+. ....+..+.+.+...
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k---~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~  192 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGK---EGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYG  192 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECS---SSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTT
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcC---CceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCC
Confidence            221       124566666  664 44 3455555   88888887632   2    3344553 345788999999888


Q ss_pred             EEEEEcCCCeEEEEEcCC-----CcEEEEeec-cCCCCEEEEEEcC--CCC-EE-EEEeCCCeEEEEeCCCC-ceeee
Q psy519          192 YLASGGEDGLVLTHELTT-----GRVISRFHL-QEHEPVTSLVWSV--TGE-TL-VTGSLTGTVQFYGWPSA-SKIGI  258 (351)
Q Consensus       192 ~l~~~~~dg~i~i~d~~~-----~~~~~~~~~-~~~~~v~~~~~~~--~~~-~l-~~~~~dg~i~i~~~~~~-~~~~~  258 (351)
                      .|+.+-++.-++.++...     +..+..... .....+..|+.-.  ++. +| ++.-.+++..+||.... +.+..
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            999998887777776542     122222211 1235678887653  333 44 44445789999998764 44433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.48  Score=38.40  Aligned_cols=176  Identities=10%  Similarity=0.029  Sum_probs=99.1

Q ss_pred             cceEEEEECCCCcE-EEEeCCCcEEEEeCCC-----------CeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy519           51 MTVWSVEACSKGLA-LTGSRDTTARLWSLEQ-----------MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW  118 (351)
Q Consensus        51 ~~i~~~~~~~~~~~-~~~~~d~~i~vw~~~~-----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  118 (351)
                      ....-++.++..-+ +.|+.+ .+.|..++.           .......  .-..|..++|+.+  .++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            34556777765444 666655 566776421           1111111  1236888999855  45554 45678888


Q ss_pred             eCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEec-----cCCCCEEEEEECCCCcEE
Q psy519          119 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-----DHVSPVLSIAFSPCGKYL  193 (351)
Q Consensus       119 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l  193 (351)
                      +...-...........++..+.++|.  .++....   ++.+.++++..++......     .-.+.+.+++|++.|+.+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~---~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEec---CCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            88765544444445677888888875  4444555   8999999998876433221     123457778888877777


Q ss_pred             EEEcCCCeEEEE-EcCCCcEEEEeeccCCCCEEEEEEcCCCCEEEEE
Q psy519          194 ASGGEDGLVLTH-ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG  239 (351)
Q Consensus       194 ~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  239 (351)
                      +++..++ ..+. ++.....+.. ....+..+.++.|-.+..++++-
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEE
Confidence            7764322 1111 1111110000 00123467888888776666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.20  E-value=0.56  Score=37.43  Aligned_cols=177  Identities=11%  Similarity=0.058  Sum_probs=99.2

Q ss_pred             EEeeecCCccccEEEEecC------------CCceEEEecCCc--------cCC-----CccceEEEEE--CCCCcE--E
Q psy519           15 IQNSFKPETVEDVLANLES------------QKNLQSRYLPYY--------TSG-----HDMTVWSVEA--CSKGLA--L   65 (351)
Q Consensus        15 ~~~~~sp~~~~~~l~~~~~------------~~~i~i~~~~~~--------~~~-----~~~~i~~~~~--~~~~~~--~   65 (351)
                      -.++..|+  |..+++++.            .|.|.++|+...        ..+     ..-....+..  .++|..  +
T Consensus        38 EDi~~~~d--g~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          38 EDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CEEEECTT--SEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             ceEEECCC--CcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            45777888  887776532            488999998764        000     0112233333  345543  2


Q ss_pred             EE---eCCCcEEEEeCCCCe-ee---EEee-CCCCCeEEEEEeCCCCEEEEEeC---------------CCcEEEEeCCC
Q psy519           66 TG---SRDTTARLWSLEQMY-PL---RIFV-GHKQDVTCARFHPKITYIGTGSY---------------DKAVRLWSITD  122 (351)
Q Consensus        66 ~~---~~d~~i~vw~~~~~~-~~---~~~~-~~~~~i~~i~~~~~~~~l~~~~~---------------dg~i~i~d~~~  122 (351)
                      +.   ....+|.+|++.... .+   .++. ......+.+.+..++.+++|-..               -+...+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            32   234567777764322 11   2222 12245788888888888777311               12233444333


Q ss_pred             CceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEe--ccCCCCEEEEEECC-CCcEEEEE
Q psy519          123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSP-CGKYLASG  196 (351)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~  196 (351)
                      ++. ......-.....++++|++++|+++...  .+.|+.|++.....+...  ..-....-.+.+.+ +|.+.+.+
T Consensus       196 ~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~--~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDV-RVVAEGFDFANGINISPDGKYVYIAELL--AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCE-EEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             Cce-EEEcCCCCccceeEECCCCCEEEEEeCC--CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            333 2222234567899999999998887653  788999998754433221  12334566788876 44444433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.56  Score=35.96  Aligned_cols=178  Identities=11%  Similarity=0.019  Sum_probs=80.6

Q ss_pred             CcEEEEeCCCCeeeEE--eeCCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeEEeccC--CCCeEEEEE
Q psy519           71 TTARLWSLEQMYPLRI--FVGHKQDVTCARFHPKITYIGTGSYDK-----AVRLWSITDGASVRVFSDH--VSPVLSIAF  141 (351)
Q Consensus        71 ~~i~vw~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~--~~~i~~~~~  141 (351)
                      ..+.+||..+.+....  +........+..+  +++.++.++.++     ....+|..+..........  ..... +..
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~  146 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAV  146 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEE
T ss_pred             chhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccce-eee
Confidence            4577888876543321  1111112222222  556666655443     3445666655432221111  11112 222


Q ss_pred             ccCCCEEEEEecCC--CCCeEEEEEccCCceeEEeccCCC--CEEEEEECCCCcEEEEEcCC-----CeEEEEEcCCCcE
Q psy519          142 SPCGKYLASGGTGS--YDKAVRLWSITDGASVRVFSDHVS--PVLSIAFSPCGKYLASGGED-----GLVLTHELTTGRV  212 (351)
Q Consensus       142 ~~~~~~l~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  212 (351)
                      . ++..++.|+...  ....+..||..+.+... ......  ........ ++++++.++.+     .....+|..+.+.
T Consensus       147 ~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         147 L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             e-eecceEecCcccccccceEEEeecccccccc-ccccccccccccccce-eeeEEEecCccccccccceeeeeecceee
Confidence            2 445555554411  13457888876654222 211111  11122222 45566665543     3467788766554


Q ss_pred             EEEeeccCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCce
Q psy519          213 ISRFHLQEHEPVTSLVWSVTGETLVTGSLTG-----TVQFYGWPSASK  255 (351)
Q Consensus       213 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~  255 (351)
                      ...-.......-.+++. .++++++.|+.++     .+.+||+.+.+-
T Consensus       224 ~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         224 TFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             EECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            33211111111122332 2677777776543     478888887643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.77  E-value=0.93  Score=37.74  Aligned_cols=48  Identities=2%  Similarity=-0.067  Sum_probs=35.9

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-------------cCCCccceEEEEECCC
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-------------TSGHDMTVWSVEACSK   61 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-------------~~~~~~~i~~~~~~~~   61 (351)
                      ....+|+|.|+  |++|++--.+|.|++++....             ...-......++++|+
T Consensus        27 ~~P~~la~~pd--g~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPD--NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCC--CeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45579999999  999888756799998886655             1122356788999985

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.11  E-value=1.3  Score=36.77  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE--e------ccCCCCeEEEEEccC---CCEEEEEecCC----
Q psy519           91 KQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV--F------SDHVSPVLSIAFSPC---GKYLASGGTGS----  155 (351)
Q Consensus        91 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~------~~~~~~i~~~~~~~~---~~~l~~~~~~~----  155 (351)
                      -...++|+|.|+++++++--..|.|++++..+++....  +      ...+.....++++|+   ..++.......    
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            34678999999999887764579999999877654322  1      122457789999994   34444432100    


Q ss_pred             ----CCC--eEEEEEccCCce--------eEEec-cCCCCEEEEEECCCCcEEEEEc
Q psy519          156 ----YDK--AVRLWSITDGAS--------VRVFS-DHVSPVLSIAFSPCGKYLASGG  197 (351)
Q Consensus       156 ----~d~--~i~i~d~~~~~~--------~~~~~-~~~~~i~~~~~~~~~~~l~~~~  197 (351)
                          ...  .+..+.......        +.... ........|.|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence                001  233333332211        11111 1223457899999998766654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.62  E-value=0.9  Score=33.19  Aligned_cols=150  Identities=14%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             cceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEe--eCC-------CCCeEEEEE-eCCCCEEEEEeC-CCcEEEEe
Q psy519           51 MTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIF--VGH-------KQDVTCARF-HPKITYIGTGSY-DKAVRLWS  119 (351)
Q Consensus        51 ~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~-------~~~i~~i~~-~~~~~~l~~~~~-dg~i~i~d  119 (351)
                      -+|.++++......++|+......+|-++.|+.....  .+.       ..-|..+.+ .++..-++++.. .|.+++++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            4566666654444488888888888888877643222  111       112223322 222233444443 45555554


Q ss_pred             CCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEE-ecc------CCCCEEEEEECCCCcE
Q psy519          120 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV-FSD------HVSPVLSIAFSPCGKY  192 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~-~~~------~~~~i~~~~~~~~~~~  192 (351)
                      .           ..+.+......+..+. ++..+........-+|+++++.-.. +..      ....|.-+-+.|++++
T Consensus       184 p-----------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L  251 (313)
T d2hu7a1         184 S-----------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL  251 (313)
T ss_dssp             C-----------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred             C-----------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence            4           3445555555554443 4444322233333568887653322 111      1234666779999999


Q ss_pred             EEEEcCCCeEEEEEcCCCcEEE
Q psy519          193 LASGGEDGLVLTHELTTGRVIS  214 (351)
Q Consensus       193 l~~~~~dg~i~i~d~~~~~~~~  214 (351)
                      ++.+-.||.-.+|.  +|+.+.
T Consensus       252 ~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         252 AVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEEEEETTEEEEEE--TTEEEC
T ss_pred             EEEEecCCchheee--cceEec
Confidence            99999999999987  566553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=2.9  Score=31.58  Aligned_cols=179  Identities=11%  Similarity=-0.037  Sum_probs=78.5

Q ss_pred             cEEEEeCCCCeeeE--EeeCCCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEeCCCCceeEEecc--CCCCeEE
Q psy519           72 TARLWSLEQMYPLR--IFVGHKQDVTCARFHPKITYIGTGSY---------DKAVRLWSITDGASVRVFSD--HVSPVLS  138 (351)
Q Consensus        72 ~i~vw~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~--~~~~i~~  138 (351)
                      .+.+||+++++-..  .+.........+..  ++..++.|+.         -..+.+||..+.+....-..  ....-.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            47788887764322  22222222222222  4556666552         23677888876654332111  1111122


Q ss_pred             EEEccCCCEEEEEecC--CCCCeEEEEEccCCceeEEecc--CCCCEEEEEECCCCcEEEEEcCC-----CeEEEEEcCC
Q psy519          139 IAFSPCGKYLASGGTG--SYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPCGKYLASGGED-----GLVLTHELTT  209 (351)
Q Consensus       139 ~~~~~~~~~l~~~~~~--~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  209 (351)
                      +.+  +++.++.++..  ........+|..+..-......  ...... +... ++..++.|+.+     ..+..||..+
T Consensus        98 ~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          98 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccc--ceeeEEecceecccccceeeeeccccCccccccccccccccce-eeee-eecceEecCcccccccceEEEeeccc
Confidence            222  55666555430  0022345566655432211110  111111 2222 34555555542     4578888876


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceee
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLT-----GTVQFYGWPSASKIG  257 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~  257 (351)
                      .+....-.........+... .++++++.|+.+     .....+|..+.+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec
Confidence            55332211111111122222 245566665543     356777877665444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.87  E-value=3.2  Score=30.26  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccC--CCEEEEEec---CCCCCeEEEEEccCCceeEEecc
Q psy519          102 KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC--GKYLASGGT---GSYDKAVRLWSITDGASVRVFSD  176 (351)
Q Consensus       102 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~---~~~d~~i~i~d~~~~~~~~~~~~  176 (351)
                      +.++++++...|.+.++-+..++.++.-+   .+|... ..|.  -.++..+-.   +..-..|.+-++...-....+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            44577888788999999888777655433   333221 1121  122222211   11123455555543333344433


Q ss_pred             CC-CCEEEEEECCCCcEEEEEcCCCeEEEEEcCCCcEEEEeeccCCCCEEEE--------E-EcCCCCEEEEEeC-CCeE
Q psy519          177 HV-SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL--------V-WSVTGETLVTGSL-TGTV  245 (351)
Q Consensus       177 ~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--------~-~~~~~~~l~~~~~-dg~i  245 (351)
                      .. -.|.++++. +.+...+|+......+|-+..|+.......+.-+-|+.+        . +.+..+-++++.. .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            33 456666665 556777888777888998888876554444444434433        2 2333334555555 7788


Q ss_pred             EEEeCCCCce
Q psy519          246 QFYGWPSASK  255 (351)
Q Consensus       246 ~i~~~~~~~~  255 (351)
                      ++++-..|..
T Consensus       180 ri~tpkeGS~  189 (313)
T d2hu7a1         180 RVFDSGEGSF  189 (313)
T ss_dssp             EEECCSSEEE
T ss_pred             EEecCCCCcc
Confidence            8887766543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.16  E-value=4.8  Score=30.38  Aligned_cols=216  Identities=13%  Similarity=-0.027  Sum_probs=105.0

Q ss_pred             cceEEeeecCCccccEEEEecCCCceEEEecCCc-----cCCCccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy519           12 KHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY-----TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI   86 (351)
Q Consensus        12 ~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~   86 (351)
                      ..|..|+--    ....++.. ||.|..|-.+..     .......|..+..-.  ....+-.|+.+..|.....-+...
T Consensus        26 ~~i~~va~G----~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~--~~~~al~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          26 SGVDAIAGG----YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLALKDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSEEEEEEC----SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS--SEEEEEETTEEEEEECCTTSTTCC
T ss_pred             CCcEEEEcc----CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC--CceeeeeeeeeeccCCCcceeecc
Confidence            456666654    33334334 799999976655     112233455554322  222223489999997643222111


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEeccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEcc
Q psy519           87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT  166 (351)
Q Consensus        87 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~  166 (351)
                      .......+..++....  ..+. -.|+.+..|.-...............|..++-.  ...++ ...   ++.++.|-..
T Consensus        99 ~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~---~g~~~~~G~~  169 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVK---NGGVIAWGDN  169 (273)
T ss_dssp             CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEE---TTEEEEEECC
T ss_pred             ccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eec---ccceeEeecc
Confidence            1112233444544432  2222 247889999754332222222223445544432  22233 334   7888888654


Q ss_pred             CCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC-CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q psy519          167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT-GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV  245 (351)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  245 (351)
                      ..............|..++... ...++ -. ||.|+.|=... ++...  .......|..++-... ..++.  .||.|
T Consensus       170 ~~g~~~~~~~~~~~v~~Is~G~-~h~~~-l~-dG~v~~WG~n~~Gql~~--~~~~~~~v~~I~~G~~-~~~~l--~~g~v  241 (273)
T d1jtdb_         170 YFGQTTVPAEAQSGVDDVAGGI-FHSLA-LK-DGKVIAWGDNRYKQTTV--PTEALSGVSAIASGEW-YSLAL--KNGKV  241 (273)
T ss_dssp             TTSTTSCCGGGSSSEEEEEECS-SEEEE-EE-TTEEEEEECCTTSTTCC--CGGGGSSCCEEEECSS-CEEEE--ETTEE
T ss_pred             cCCcccccccccCCccceeccc-eeeEE-Ee-cCcEEEcCCCCCCccCC--CccCCCCcEEEEeCcc-eEEEE--ECCEE
Confidence            4322222223345677776542 22333 23 79999996432 22111  1122245666664432 23333  37999


Q ss_pred             EEEeCC
Q psy519          246 QFYGWP  251 (351)
Q Consensus       246 ~i~~~~  251 (351)
                      ..|-..
T Consensus       242 ~~WG~~  247 (273)
T d1jtdb_         242 IAWGSS  247 (273)
T ss_dssp             EEESTT
T ss_pred             EEECCC
Confidence            999544

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.62  E-value=5.8  Score=29.87  Aligned_cols=184  Identities=14%  Similarity=0.034  Sum_probs=87.7

Q ss_pred             ccceEEEEECCCCcEEEEeCCCcEEEEeCCCCeeeEEeeCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q psy519           50 DMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF  129 (351)
Q Consensus        50 ~~~i~~~~~~~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  129 (351)
                      ...|..++--.. ..+.- .||.|..|-....-++..-......+..+..-. ...++.  .|+.++.|...........
T Consensus        25 ~~~i~~va~G~~-h~~al-~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~al--~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          25 QSGVDAIAGGYF-HGLAL-KGGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLAL--KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSSEEEEEECSS-EEEEE-ETTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEEccCC-EEEEE-ECCEEEEEeCCCCCceeeeecccccceEEecCC-Cceeee--eeeeeeccCCCcceeeccc
Confidence            455777775322 22333 489999998765433322222234455554422 222332  4899999976432222111


Q ss_pred             ccCCCCeEEEEEccCCCEEEEEecCCCCCeEEEEEccCCceeEEeccCCCCEEEEEECCCCcEEEEEcCCCeEEEEEcCC
Q psy519          130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT  209 (351)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~l~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  209 (351)
                      ......+..++....  ..+. ..   |+.+..|.-...............+..++-.  ...++ ...++.++.|-...
T Consensus       100 ~~~~~~~~~i~~~~~--~~~~-~~---dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~  170 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW--ASYA-LK---DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNY  170 (273)
T ss_dssp             GGGGSSCCEEEEETT--EEEE-EE---TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCT
T ss_pred             cccccceeEEeeecc--cccc-cc---cccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeeccc
Confidence            112233444444322  2222 24   8888888744322111111222344444332  22233 33467888886543


Q ss_pred             CcEEEEeeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy519          210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP  251 (351)
Q Consensus       210 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~  251 (351)
                      ..... ........|..++-..  ...+.-. ||.|+.|=..
T Consensus       171 ~g~~~-~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n  208 (273)
T d1jtdb_         171 FGQTT-VPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDN  208 (273)
T ss_dssp             TSTTS-CCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECC
T ss_pred             CCccc-ccccccCCccceeccc--eeeEEEe-cCcEEEcCCC
Confidence            22211 1123345677776543  2222233 7999999654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.20  E-value=6.1  Score=28.11  Aligned_cols=136  Identities=13%  Similarity=0.008  Sum_probs=78.0

Q ss_pred             CCCccceEEeeecCCccccEEEEecCCCceEEEecCCc----cCCCc--------cceEEEEECCCCcEEEEeCCCcEEE
Q psy519            8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYY----TSGHD--------MTVWSVEACSKGLALTGSRDTTARL   75 (351)
Q Consensus         8 ~~~~~~v~~~~~sp~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~--------~~i~~~~~~~~~~~~~~~~d~~i~v   75 (351)
                      ++.-..+.-++|||+  |++.++-.  +.++.=.....    .....        +.-.-+-|.|+|.+.+.. ++.++-
T Consensus        36 k~g~~n~~~i~fsP~--G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr  110 (235)
T d1tl2a_          36 KGGWSNFKFLFLSPG--GELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYK  110 (235)
T ss_dssp             SSSCTTCSEEEECTT--SCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEE
T ss_pred             cccccceeEEEECCC--CcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-Ccceec
Confidence            334456777999999  99888753  34544343332    00011        233457889999883333 354443


Q ss_pred             EeCCCCeee------EEe-eCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce------eEEe-ccCCCCeEEEEE
Q psy519           76 WSLEQMYPL------RIF-VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS------VRVF-SDHVSPVLSIAF  141 (351)
Q Consensus        76 w~~~~~~~~------~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~-~~~~~~i~~~~~  141 (351)
                      =...+.++.      ..+ ...-..+..+-|.|+|.+.++.+ + .++-+....+..      -..+ .++-....-+.|
T Consensus       111 ~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~-~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~F  188 (235)
T d1tl2a_         111 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG-Q-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  188 (235)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET-T-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             CCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC-C-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEE
Confidence            333332211      111 12234577899999998777733 3 477776544321      1122 345566678999


Q ss_pred             ccCCCEEEE
Q psy519          142 SPCGKYLAS  150 (351)
Q Consensus       142 ~~~~~~l~~  150 (351)
                      +|+|++..+
T Consensus       189 s~dG~L~~v  197 (235)
T d1tl2a_         189 SSVGTLFGV  197 (235)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCcEEEE
Confidence            999988776

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.23  E-value=9.5  Score=29.67  Aligned_cols=223  Identities=10%  Similarity=0.055  Sum_probs=118.9

Q ss_pred             CCccccEEEEecCCCceEEEecCCc---------cCCCccceEEE-EECCCCcEEEEeCCCcEEEE---eCCC------C
Q psy519           21 PETVEDVLANLESQKNLQSRYLPYY---------TSGHDMTVWSV-EACSKGLALTGSRDTTARLW---SLEQ------M   81 (351)
Q Consensus        21 p~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~i~~~-~~~~~~~~~~~~~d~~i~vw---~~~~------~   81 (351)
                      |+  .+.+++-+.+|.|+--.+...         ... .+.+..+ ..+....++.-+..|.++..   ++..      |
T Consensus         3 ~~--E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G   79 (323)
T d1wp5a_           3 AS--EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG   79 (323)
T ss_dssp             SC--CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             CC--CCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccc
Confidence            55  788888899999875544322         222 2233333 33333444555666765544   4432      3


Q ss_pred             eeeEEee--CCCCCeEEEEE-eC--CCCEEEEEeCCCcEEEEeCCCCc------eeEEe-ccCCCCeEEEEEccCCCEEE
Q psy519           82 YPLRIFV--GHKQDVTCARF-HP--KITYIGTGSYDKAVRLWSITDGA------SVRVF-SDHVSPVLSIAFSPCGKYLA  149 (351)
Q Consensus        82 ~~~~~~~--~~~~~i~~i~~-~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~-~~~~~~i~~~~~~~~~~~l~  149 (351)
                      .++..+-  .....+..+.. .+  ...+|+..+..|.++...+....      ....+ -.....+..+....+...++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence            3333221  23344444433 22  35688888999999999874321      11111 12456677777777777788


Q ss_pred             EEecCCCCCeEEEEEccCCce-------eEEecc-CCCCEEE-EEECCCCcEEEEEcCCCeEEEEEcCCC-------cEE
Q psy519          150 SGGTGSYDKAVRLWSITDGAS-------VRVFSD-HVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTG-------RVI  213 (351)
Q Consensus       150 ~~~~~~~d~~i~i~d~~~~~~-------~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~  213 (351)
                      .++.   .|.+..|+...-..       +.-++- ....+.. ....+++..++..+..|..+.-.+..-       +-+
T Consensus       160 l~t~---~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv  236 (323)
T d1wp5a_         160 LVTH---NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV  236 (323)
T ss_dssp             EEET---TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred             EEEe---cceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhcccccccccc
Confidence            8878   99999998754211       111211 2233443 344556677888888888877655321       111


Q ss_pred             EEeec--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy519          214 SRFHL--QEHEPVTSLVWSVTGETLVTGSLTGTVQFYG  249 (351)
Q Consensus       214 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~  249 (351)
                      ..+..  .....+..+....+...|+..+..|.+.-.+
T Consensus       237 ~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~  274 (323)
T d1wp5a_         237 VILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIK  274 (323)
T ss_dssp             ECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEE
T ss_pred             ccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEE
Confidence            11111  1112344444444455555555556554433