Psyllid ID: psy5242

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHccEEcccEEEEEcccccccccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcHcHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHcccEEccccEEEEcccccccccccEEEEEcHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTQAELMKGSVDQLLVGIErynpehlsTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKAltnfphtdfilckcllskdlckedpiDQIIYLADLLEsckftqfwsrmhtipdlflniegfNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYgwkeldngyifianqdeniktkniteKIEFENAATIMTSNV
Flexible Loop (DISEMBL)
mtqaelmkgsvDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFianqdeniktknitekiefenaatimtsnv
Low Complexity Region (SEG)
MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFIlckcllskdlckEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Disordered region (IsUnstruct)
**********VDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEF***********
Disordered Region (DISOPRED)
************QLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN*
Disordered Region (DISEMBL)
********GSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Disordered Region (DISPRO)
****ELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q1HPS4	218	Eukaryotic translation in	N/A	N/A	0.976	0.972	0.640	8e-73
Q28C65	218	Eukaryotic translation in	yes	N/A	0.995	0.990	0.566	8e-69
Q6GNI4	218	Eukaryotic translation in	N/A	N/A	0.995	0.990	0.557	3e-68
Q9UBQ5	218	Eukaryotic translation in	yes	N/A	0.995	0.990	0.562	3e-68
Q3T0V3	218	Eukaryotic translation in	yes	N/A	0.995	0.990	0.562	4e-68
Q9DBZ5	218	Eukaryotic translation in	yes	N/A	0.995	0.990	0.552	2e-67
Q567V6	219	Eukaryotic translation in	yes	N/A	0.990	0.981	0.546	1e-66
Q7QGK4	221	Eukaryotic translation in	yes	N/A	0.944	0.927	0.589	8e-65
Q177J8	221	Eukaryotic translation in	N/A	N/A	0.944	0.927	0.608	1e-64
B0XEA7	221	Eukaryotic translation in	N/A	N/A	0.944	0.927	0.584	3e-64

>sp|Q1HPS4|EIF3K_BOMMO Eukaryotic translation initiation factor 3 subunit K OS=Bombyx mori PE=2 SV=1

 Score =  273 bits (697), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 164/214 (76%), Gaps = 2/214 (0%)

Query: 2   TQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNY 60
           T AE MK +V  +L  IERYNP +L  LE+YVE+Q  EN YD  ANLAVLKLYQF+ + +
Sbjct: 4   TMAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDWGANLAVLKLYQFNPEKF 63

Query: 61  NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRM 120
           N  IT QILLKALTNFPHTDF LCKCLL + + + + I QI YLAD+LE C F QF +R+
Sbjct: 64  NADITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFGNRV 123

Query: 121 HTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKE 180
           H +P+L   I GF+DSIRKFVCHVVGITFQTIDK  L+ LL G++D TL+ WVKKYGW++
Sbjct: 124 HQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVTLKHWVKKYGWRD 183

Query: 181 LDNGYIFIANQDENIKTKNITEKIEFENAATIMT 214
            D   IFIANQDENIKTKNITEKIEF++ A +M 
Sbjct: 184 -DGSLIFIANQDENIKTKNITEKIEFDHLAPLMA 216

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Bombyx mori (taxid: 7091)

>sp|Q28C65|EIF3K_XENTR Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1

 Score =  259 bits (663), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 160/217 (73%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   + M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MASFDQMRANVGKLLRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + +  LR+W+ KYGW 
Sbjct: 121 LDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSEPQLRVWMSKYGWM 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
           E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct: 181 ESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GNI4|EIF3K_XENLA Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1

 Score =  258 bits (658), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 160/217 (73%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MASFEQMRANVGKLLRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+Q+LLKALTN PHTDF LCKC++ +   ++ PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   + GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + +  LR+W+ KYGW 
Sbjct: 121 LDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSEPQLRVWMSKYGWI 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
           E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct: 181 ESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q9UBQ5|EIF3K_HUMAN Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1

 Score =  258 bits (658), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 161/217 (74%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Homo sapiens (taxid: 9606)

>sp|Q3T0V3|EIF3K_BOVIN Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 161/217 (74%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDSQLKVWMSKYGWS 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Bos taurus (taxid: 9913)

>sp|Q9DBZ5|EIF3K_MOUSE Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/217 (55%), Positives = 161/217 (74%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + D+ L++W+ KYGW 
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDNQLKVWMSKYGWS 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             ++G +FI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 181 ADESGQVFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Mus musculus (taxid: 10090)

>sp|Q567V6|EIF3K_DANRE Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 162/216 (75%), Gaps = 1/216 (0%)

Query: 2   TQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY- 60
           T  E M+ +V +LL GI+RYNPE+L+TLE+YV+ Q  EN YDLEANLAVLKLYQF+  Y 
Sbjct: 3   TTFEQMRANVGKLLRGIDRYNPENLATLERYVDTQARENAYDLEANLAVLKLYQFNLAYF 62

Query: 61  NMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRM 120
              +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL +LLE+C F  FW+ +
Sbjct: 63  QTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASL 122

Query: 121 HTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKE 180
               DL   I GF +S+RKF+CHVVGIT+Q I+ +LL+E+L    D+ +++W+ KYGW E
Sbjct: 123 EENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEMLGDPLDTQVKVWMNKYGWTE 182

Query: 181 LDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
            ++G IFI NQ+E++K KNI EKI+FE+ ++IM ++
Sbjct: 183 NEDGQIFIHNQEESVKPKNIVEKIDFESVSSIMATS 218

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|Q7QGK4|EIF3K_ANOGA Eukaryotic translation initiation factor 3 subunit K OS=Anopheles gambiae GN=AGAP011580 PE=3 SV=2

 Score =  246 bits (628), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 154/207 (74%), Gaps = 2/207 (0%)

Query: 10  SVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY-NMKITSQI 68
            + ++L  IERYNPEHL  +E YVE Q  EN YDLEANLA LKLYQF+ +  N+ IT  I
Sbjct: 14  PIQEMLKSIERYNPEHLKVIEAYVEEQARENQYDLEANLACLKLYQFNPHLLNLDITYII 73

Query: 69  LLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFL 128
           LLKALTNFPHTDF+LCKCLL      ++ + +IIYLAD+LE C F+ FWSR+   P+ + 
Sbjct: 74  LLKALTNFPHTDFVLCKCLLLPAQMNDETVKEIIYLADILEKCDFSLFWSRLAKHPENYQ 133

Query: 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFI 188
            I GF+DSIRKFVCHVVGITFQTI++  L +LL  VE+  L  W+K+YGWKE + G + I
Sbjct: 134 KISGFHDSIRKFVCHVVGITFQTIERGYLMQLLGNVEEKVLLSWLKRYGWKE-EGGLVTI 192

Query: 189 ANQDENIKTKNITEKIEFENAATIMTS 215
           A Q++NIKTK+ITEKIEF+N A +M +
Sbjct: 193 ATQEDNIKTKHITEKIEFDNLAPLMAN 219

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|Q177J8|EIF3K_AEDAE Eukaryotic translation initiation factor 3 subunit K OS=Aedes aegypti GN=AAEL006115 PE=3 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 150/207 (72%), Gaps = 2/207 (0%)

Query: 10  SVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNMKITSQI 68
            +  +L  IERYNPEHL  +E YVE Q  +N YDLEANLA LKLYQF+ Q  N+ +T  I
Sbjct: 14  PIQDMLKSIERYNPEHLKVIEAYVEEQARDNQYDLEANLACLKLYQFNPQLMNLDVTYVI 73

Query: 69  LLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFL 128
           LLKALTNFPHTDF+LCKCLL      +D + +IIYLAD+LE C FT FWSR+   P  F 
Sbjct: 74  LLKALTNFPHTDFVLCKCLLLPAQMNDDTVKEIIYLADILEKCDFTLFWSRVAKNPPFFK 133

Query: 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFI 188
            I GF DSIRKFVCHVVGITFQ+I+K+ L  LL  V+D+ LR WVKK  WKE D  YI +
Sbjct: 134 KISGFFDSIRKFVCHVVGITFQSIEKQYLVRLLGDVDDNVLRAWVKKNNWKE-DGQYITV 192

Query: 189 ANQDENIKTKNITEKIEFENAATIMTS 215
           A Q+ NIKTK+ITEKI+FEN A +M +
Sbjct: 193 AVQEGNIKTKHITEKIDFENLAPLMAN 219

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|B0XEA7|EIF3K_CULQU Eukaryotic translation initiation factor 3 subunit K OS=Culex quinquefasciatus GN=CPIJ017839 PE=3 SV=2

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 150/207 (72%), Gaps = 2/207 (0%)

Query: 10  SVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNMKITSQI 68
            + ++L  IERYNPEHL  +E YVE Q  +N YDLEANLA LKLYQF+ Q  N+ +T  I
Sbjct: 14  PIQEMLKSIERYNPEHLKVIEAYVEDQAKDNKYDLEANLACLKLYQFNPQMMNLDVTYTI 73

Query: 69  LLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFL 128
           LLK+LTNFPHTDF+LCKCLL      +D + +I+YLAD+LE C FT FWSR+   P  F 
Sbjct: 74  LLKSLTNFPHTDFVLCKCLLLPAQMNDDSVKEIVYLADILEKCDFTLFWSRVQKNPQFFK 133

Query: 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFI 188
            I GF++SIRKFVCHVVGITFQ+I+K+ L  LL  V+D  L  WVKK GWKE +  YI +
Sbjct: 134 KITGFSESIRKFVCHVVGITFQSIEKQYLVRLLGDVDDKVLNAWVKKNGWKE-EGEYILV 192

Query: 189 ANQDENIKTKNITEKIEFENAATIMTS 215
           A Q+ NIKTK+ITEKI+FEN   +M +
Sbjct: 193 AQQEGNIKTKHITEKIDFENLGPLMAN 219

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
209863134	215	eukaryotic translation initiation factor	0.976	0.986	0.660	5e-82
89574493	215	eukaryotic translation initiation factor	0.976	0.986	0.655	8e-82
149689082	215	eukaryotic translation initiation factor	0.976	0.986	0.679	5e-80
340709407	216	PREDICTED: eukaryotic translation initia	0.976	0.981	0.680	2e-79
350407151	216	PREDICTED: eukaryotic translation initia	0.976	0.981	0.680	2e-79
307215184	216	Eukaryotic translation initiation factor	0.976	0.981	0.685	4e-79
328792666	216	PREDICTED: eukaryotic translation initia	0.976	0.981	0.680	4e-79
332029660	216	Eukaryotic translation initiation factor	0.976	0.981	0.671	2e-77
307172920	216	Eukaryotic translation initiation factor	0.976	0.981	0.671	3e-77
383856557	216	PREDICTED: eukaryotic translation initia	0.976	0.981	0.657	3e-76

>gi|209863134|ref|NP_001119623.2| eukaryotic translation initiation factor 3, subunit K [Acyrthosiphon pisum]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 140/212 (66%), Positives = 175/212 (82%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMK 63
           AE M+ +V  LL GIERYNP+HLSTLE YVEVQ  EN YDLEANLAVLK+YQFH +YN+ 
Sbjct: 2   AEAMRQTVASLLQGIERYNPQHLSTLEHYVEVQSQENTYDLEANLAVLKIYQFHHDYNLD 61

Query: 64  ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTI 123
           IT QI+LKA+TNFPH+DF+LCKCLL++ LC+E P+ Q+++LADLLE+C F +FW  +H+ 
Sbjct: 62  ITVQIMLKAITNFPHSDFVLCKCLLNEKLCQEAPLSQVLFLADLLENCNFKEFWYNVHST 121

Query: 124 PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDN 183
           P+L+  I GF DS+RKFVCHV+GITFQ+I+K  L ELL GV+D+ L+ W+ KY WKELDN
Sbjct: 122 PELYAKINGFLDSVRKFVCHVIGITFQSIEKHNLMELLGGVDDAALKHWILKYNWKELDN 181

Query: 184 GYIFIANQDENIKTKNITEKIEFENAATIMTS 215
            YIF+ANQDENIKTKNITEKI++EN   +M S
Sbjct: 182 KYIFVANQDENIKTKNITEKIDYENILGVMAS 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89574493|gb|ABD76377.1| eukaryotic translation initiation factor 3 subunit 12-like protein [Acyrthosiphon pisum] gi|239789133|dbj|BAH71212.1| ACYPI000023 [Acyrthosiphon pisum]

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 175/212 (82%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMK 63
           AE M+ +V  LL GIERYNP+HLSTLE YVEVQ  EN YDLEANLAVLK+YQFH +YN+ 
Sbjct: 2   AEAMRQTVASLLQGIERYNPQHLSTLEHYVEVQSQENTYDLEANLAVLKIYQFHHDYNLD 61

Query: 64  ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTI 123
           IT QI+LKA+TNFPH+DF+LCKCLL++ LC+E P+ Q+++LADLLE+C F +FW  +H+ 
Sbjct: 62  ITVQIMLKAITNFPHSDFVLCKCLLNEKLCQEAPLSQVLFLADLLENCNFKEFWYNVHST 121

Query: 124 PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDN 183
           P+L+  + GF DS+RKFVCHV+GITFQ+I+K  L ELL GV+D+ L+ W+ KY WKELDN
Sbjct: 122 PELYAKVNGFLDSVRKFVCHVIGITFQSIEKHNLMELLGGVDDAALKHWILKYNWKELDN 181

Query: 184 GYIFIANQDENIKTKNITEKIEFENAATIMTS 215
            YIF+ANQDENIKTKNITEKI++EN   +M S
Sbjct: 182 KYIFVANQDENIKTKNITEKIDYENILGVMAS 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149689082|gb|ABR27872.1| eukaryotic translation initiation factor 3 subunit 12-like protein [Triatoma infestans]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 173/212 (81%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMK 63
           AE+M+ +V  +L GI+RYNP++LSTLE+YVE+Q  EN YDLEANLAVLKLYQF+QNYN  
Sbjct: 2   AEVMRQTVASMLQGIDRYNPDNLSTLERYVEIQSQENAYDLEANLAVLKLYQFNQNYNKD 61

Query: 64  ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTI 123
           IT QILLKALTNFPHTDFILCKCLL++ LC E PI +II LAD LE C F  FW +++ +
Sbjct: 62  ITCQILLKALTNFPHTDFILCKCLLNQKLCAEGPIKEIIILADYLECCDFEHFWKKVNGM 121

Query: 124 PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDN 183
            +L   I GF DSIRKFVCHVVGITFQTI + LLS+LL GV+D TL+ WV+KYGWKE+ N
Sbjct: 122 QELCARITGFQDSIRKFVCHVVGITFQTIQRSLLSQLLGGVDDHTLKHWVQKYGWKEIAN 181

Query: 184 GYIFIANQDENIKTKNITEKIEFENAATIMTS 215
             IFIAN+DENIKTKNITEKI+F++ A IM +
Sbjct: 182 NMIFIANRDENIKTKNITEKIDFDSVAGIMAT 213

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709407|ref|XP_003393301.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Bombus terrestris]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP+HL+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDHLATLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ + +E PI+QI+YL D+LE C F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSERIMQESPINQIMYLGDILEQCNFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + DL   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+D+TL+ WVKKYGWKE  
Sbjct: 122 MSDLCDRIVGFQDSIRKFVCHVVGITFQTIDKNLLAQLLGGVDDTTLKHWVKKYGWKEES 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KSVIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407151|ref|XP_003488001.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Bombus impatiens]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP+HL+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDHLATLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ + +E PI+QI+YL D+LE C F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSERIMQESPINQIMYLGDILEQCNFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + DL   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+D+TL+ WVKKYGWKE  
Sbjct: 122 MSDLCDRIVGFQDSIRKFVCHVVGITFQTIDKNLLAQLLGGVDDTTLKHWVKKYGWKEES 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215184|gb|EFN89956.1| Eukaryotic translation initiation factor 3 subunit K [Harpegnathos saltator]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP++LSTLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDNLSTLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ L  E PIDQI+YL D+LE C+F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSEKLMSESPIDQIMYLGDILERCEFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + +L   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+D+TL+ WVKKYGWKE  
Sbjct: 122 MSELCDRIVGFQDSIRKFVCHVVGITFQTIDKSLLAQLLGGVDDATLKHWVKKYGWKEES 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KTIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792666|ref|XP_003251758.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Apis mellifera] gi|380023491|ref|XP_003695554.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Apis florea]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 170/213 (79%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP+HL+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDHLATLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ + +E PI+QI+YL D+LE C F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSERIMQESPINQIMYLGDILEQCDFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + DL   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+D TL+ WVKKYGWKE  
Sbjct: 122 MSDLCDRIVGFQDSIRKFVCHVVGITFQTIDKSLLAQLLGGVDDPTLKHWVKKYGWKEES 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029660|gb|EGI69549.1| Eukaryotic translation initiation factor 3 subunit K [Acromyrmex echinatior]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 170/213 (79%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP++L+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDNLTTLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ L  E PI+QI+YL D+LE C F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSEKLMSESPINQIMYLGDILERCDFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + +L   I GF DSIRKFVCHVVGITFQTID+ LL++LL GV+D+TL+ WVKKYGWKE  
Sbjct: 122 MSELCDRIVGFQDSIRKFVCHVVGITFQTIDRTLLAQLLGGVDDATLKHWVKKYGWKEET 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KTIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172920|gb|EFN64087.1| Eukaryotic translation initiation factor 3 subunit K [Camponotus floridanus]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 170/213 (79%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP++L+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDNLTTLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLLS+ L  E PI+QI+YL D+LE C F  FW R+ +
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLSEKLMSESPINQIMYLGDILERCDFQHFWDRVLS 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + +L   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+++TL+ WVKKYGWKE  
Sbjct: 122 MSELCDRIVGFQDSIRKFVCHVVGITFQTIDKVLLAQLLGGVDEATLKHWVKKYGWKEES 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KTIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856557|ref|XP_003703774.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Megachile rotundata]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/213 (65%), Positives = 167/213 (78%), Gaps = 1/213 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
           AE M+ +V  +L GIERYNP+HL+TLEKYVE+Q  EN YDLEANLAVLKLYQ +   +NM
Sbjct: 2   AEAMRQTVAGMLKGIERYNPDHLATLEKYVEIQSRENAYDLEANLAVLKLYQLNPHRFNM 61

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            IT QILLKALTN PHTDF+LCKCLL++ +  E PI  I+YL D+LE C F   W+++  
Sbjct: 62  DITCQILLKALTNLPHTDFVLCKCLLNERIMVETPISHIMYLGDILEQCDFQHSWNKIRA 121

Query: 123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD 182
           + D+   I GF DSIRKFVCHVVGITFQTIDK LL++LL GV+D+TL+ WVKKYGWKE  
Sbjct: 122 MSDVCDRIVGFQDSIRKFVCHVVGITFQTIDKSLLAQLLGGVDDTTLKHWVKKYGWKEEG 181

Query: 183 NGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
              IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 182 KSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
UNIPROTKB|Q28C65	218	eif3k "Eukaryotic translation	0.995	0.990	0.548	5e-60
UNIPROTKB|Q6GNI4	218	eif3k "Eukaryotic translation	0.995	0.990	0.539	1.3e-59
UNIPROTKB|Q9UBQ5	218	EIF3K "Eukaryotic translation	0.995	0.990	0.543	2.2e-59
UNIPROTKB|Q3T0V3	218	EIF3K "Eukaryotic translation	0.995	0.990	0.543	2.7e-59
UNIPROTKB|E2R4Y6	218	EIF3K "Uncharacterized protein	0.995	0.990	0.543	2.7e-59
UNIPROTKB|F1RI41	218	EIF3K "Uncharacterized protein	0.995	0.990	0.539	7.3e-59
MGI|MGI:1921080	218	Eif3k "eukaryotic translation	0.995	0.990	0.534	7.3e-59
ZFIN|ZDB-GENE-050417-45	219	zgc:110726 "zgc:110726" [Danio	0.990	0.981	0.527	6.6e-58
UNIPROTKB|B7ZAM9	211	EIF3K "Eukaryotic translation	0.958	0.985	0.550	1.1e-57
FB|FBgn0034654	222	CG10306 [Drosophila melanogast	0.940	0.918	0.546	7.8e-55

UNIPROTKB|Q28C65 eif3k "Eukaryotic translation initiation factor 3 subunit K" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/217 (54%), Positives = 152/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   + M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MASFDQMRANVGKLLRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + +  LR+W+ KYGW 
Sbjct:   121 LDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSEPQLRVWMSKYGWM 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct:   181 ESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6GNI4 eif3k "Eukaryotic translation initiation factor 3 subunit K" [Xenopus laevis (taxid:8355)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 117/217 (53%), Positives = 152/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MASFEQMRANVGKLLRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+Q+LLKALTN PHTDF             + PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   + GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + +  LR+W+ KYGW 
Sbjct:   121 LDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSEPQLRVWMSKYGWI 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct:   181 ESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q9UBQ5 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Homo sapiens (taxid:9606)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 118/217 (54%), Positives = 153/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
               ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q3T0V3 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Bos taurus (taxid:9913)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 118/217 (54%), Positives = 153/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDSQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
               ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

UNIPROTKB|E2R4Y6 EIF3K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 118/217 (54%), Positives = 153/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDSQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
               ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

UNIPROTKB|F1RI41 EIF3K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 117/217 (53%), Positives = 152/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + D  L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDGQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
               ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

MGI|MGI:1921080 Eif3k "eukaryotic translation initiation factor 3, subunit K" [Mus musculus (taxid:10090)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 116/217 (53%), Positives = 153/217 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + D+ L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDNQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
               ++G +FI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   181 ADESGQVFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0003723 "RNA binding" evidence=RCA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO;IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=ISO;IDA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

ZFIN|ZDB-GENE-050417-45 zgc:110726 "zgc:110726" [Danio rerio (taxid:7955)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 114/216 (52%), Positives = 154/216 (71%)

Query:     2 TQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY- 60
             T  E M+ +V +LL GI+RYNPE+L+TLE+YV+ Q  EN YDLEANLAVLKLYQF+  Y 
Sbjct:     3 TTFEQMRANVGKLLRGIDRYNPENLATLERYVDTQARENAYDLEANLAVLKLYQFNLAYF 62

Query:    61 NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSRM 120
                +T+QILLKALTN PHTDF             E PI QI+YL +LLE+C F  FW+ +
Sbjct:    63 QTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASL 122

Query:   121 HTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKE 180
                 DL   I GF +S+RKF+CHVVGIT+Q I+ +LL+E+L    D+ +++W+ KYGW E
Sbjct:   123 EENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEMLGDPLDTQVKVWMNKYGWTE 182

Query:   181 LDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
              ++G IFI NQ+E++K KNI EKI+FE+ ++IM ++
Sbjct:   183 NEDGQIFIHNQEESVKPKNIVEKIDFESVSSIMATS 218

GO:0043022 "ribosome binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7ZAM9 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 115/209 (55%), Positives = 147/209 (70%)

Query:     1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
             M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct:     1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query:    61 -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
                 +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct:    61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query:   120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
             +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct:   121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180

Query:   180 ELDNGYIFIANQDENIKTKNITEKIEFEN 208
               ++G IFI +Q+E+IK KNI EKI+F++
Sbjct:   181 ADESGQIFICSQEESIKPKNIVEKIDFDS 209

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

FB|FBgn0034654 CG10306 [Drosophila melanogaster (taxid:7227)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 112/205 (54%), Positives = 139/205 (67%)

Query:    10 SVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY-NMKITSQI 68
             ++ ++L  IERYNP+HL TLE YV+ Q   N YDLEANLAVLKLYQF+ +  N  IT  I
Sbjct:    14 TIQEMLGCIERYNPDHLKTLESYVQDQAKNNTYDLEANLAVLKLYQFNPHMLNFDITYTI 73

Query:    69 LLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFL 128
             LLK+LT+ PHTDF+            ++ +  II LAD+LE   FT FW R     ++F 
Sbjct:    74 LLKSLTSLPHTDFVMAKCLLLPQQMKDENVQTIIDLADILERADFTLFWQRAEVNRNMFR 133

Query:   129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFI 188
             +I GF+DSIRKFV HVVG TFQTI K LL ELL G+EDSTL  W+K+ GWK    G + +
Sbjct:   134 HITGFHDSIRKFVSHVVGTTFQTIRKDLLKELLGGIEDSTLESWIKRNGWKNQGQGLVIV 193

Query:   189 ANQDENIKTKNITEKIEFENAATIM 213
             A QD+ IKTKNITEKIEF+N   +M
Sbjct:   194 AMQDDKIKTKNITEKIEFDNVGALM 218

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0043022 "ribosome binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W2D9	EIF3K_DROME	No assigned EC number	0.5679	0.9447	0.9234	yes	N/A
Q7QGK4	EIF3K_ANOGA	No assigned EC number	0.5893	0.9447	0.9276	yes	N/A
Q1HPS4	EIF3K_BOMMO	No assigned EC number	0.6401	0.9769	0.9724	N/A	N/A
Q9DBZ5	EIF3K_MOUSE	No assigned EC number	0.5529	0.9953	0.9908	yes	N/A
Q177J8	EIF3K_AEDAE	No assigned EC number	0.6086	0.9447	0.9276	N/A	N/A
B4LNQ8	EIF3K_DROVI	No assigned EC number	0.5652	0.9493	0.9279	N/A	N/A
Q28C65	EIF3K_XENTR	No assigned EC number	0.5668	0.9953	0.9908	yes	N/A
Q9UBQ5	EIF3K_HUMAN	No assigned EC number	0.5622	0.9953	0.9908	yes	N/A
Q2UQC6	EIF3K_ASPOR	No assigned EC number	0.2943	0.9262	0.8007	yes	N/A
B4G9X6	EIF3K_DROPE	No assigned EC number	0.5776	0.9447	0.9234	N/A	N/A
Q3T0V3	EIF3K_BOVIN	No assigned EC number	0.5622	0.9953	0.9908	yes	N/A
B4KTN5	EIF3K_DROMO	No assigned EC number	0.5728	0.9447	0.9234	N/A	N/A
Q54EQ1	EIF3K_DICDI	No assigned EC number	0.3333	0.8110	0.7154	yes	N/A
Q292B6	EIF3K_DROPS	No assigned EC number	0.5776	0.9447	0.9234	yes	N/A
B4JVG7	EIF3K_DROGR	No assigned EC number	0.5679	0.9447	0.9234	N/A	N/A
Q6C830	EIF3K_YARLI	No assigned EC number	0.3022	0.9631	0.8931	yes	N/A
B4P8V1	EIF3K_DROYA	No assigned EC number	0.5679	0.9447	0.9234	N/A	N/A
Q5B8S5	EIF3K_EMENI	No assigned EC number	0.3019	0.8202	0.712	yes	N/A
Q9SZA3	EIF3K_ARATH	No assigned EC number	0.3238	0.9216	0.8849	yes	N/A
B3MIY7	EIF3K_DROAN	No assigned EC number	0.5748	0.9493	0.9279	N/A	N/A
Q4WXE9	EIF3K_ASPFU	No assigned EC number	0.3122	0.9078	0.7911	yes	N/A
B3NN00	EIF3K_DROER	No assigned EC number	0.5631	0.9447	0.9234	N/A	N/A
Q567V6	EIF3K_DANRE	No assigned EC number	0.5462	0.9907	0.9817	yes	N/A
A2R7B4	EIF3K_ASPNC	No assigned EC number	0.3179	0.8663	0.7041	yes	N/A
B4MIW0	EIF3K_DROWI	No assigned EC number	0.5533	0.9447	0.9234	N/A	N/A
B0XEA7	EIF3K_CULQU	No assigned EC number	0.5845	0.9447	0.9276	N/A	N/A
Q6GNI4	EIF3K_XENLA	No assigned EC number	0.5576	0.9953	0.9908	N/A	N/A
B4I7U3	EIF3K_DROSE	No assigned EC number	0.5679	0.9447	0.9234	N/A	N/A
Q9XUP3	EIF3K_CAEEL	No assigned EC number	0.3391	0.9723	0.8791	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
pfam10075	144	pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN	6e-32
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	1e-24

>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8

 Score =  113 bits (284), Expect = 6e-32
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 64  ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDP-IDQIIYLADLLESCKFTQFWSRMHT 122
           +   ILLK LT     DF L    + + + + +P I Q++ L  LL    + +FW  + +
Sbjct: 6   LYGLILLKLLTQNDIADFRLLLKRIPQAIKESNPEIQQLLTLGQLLWENDYAKFWQTLRS 65

Query: 123 ---IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
                D    I G  D+IR  +  +VG  + +I    L+ELL    D  L  + KK GW 
Sbjct: 66  NDWSEDYTPFIAGLEDTIRDEIAALVGKAYSSISIDDLAELLGLSSDEELEKFAKKRGWT 125

Query: 180 ELDNGYIFIANQDENIKTKN 199
              +G I   N  E IK KN
Sbjct: 126 LDSDGRILPPN-PEEIKPKN 144

This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development. Length = 144

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 19  ERYNPEHLSTLEKYVEVQCA----ENVYDLEANLAVLKLYQFHQNY------NMKITSQI 68
           +  NP  L  L+  V    A    E     + N  + +L + + +         +  +  
Sbjct: 1   DEPNPSDLRPLKVAVLEIGARIALEKGDLEQFNQCLSQLKELYDDLLGKSPNEAEFIAYY 60

Query: 69  LLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFL 128
           LL  L+N P +DF     LL  ++  +  I   + L   L    + +F+  +   P L+ 
Sbjct: 61  LLYLLSNNPISDFHTELELLPDEIRNDPYIQFALELEQALMEGNYHRFFRLLKKAPYLYA 120

Query: 129 NI-EGFNDSIRKFVCHVVGITFQTIDKKLLSELL 161
            + E F D IRK     +   +++I    L+ELL
Sbjct: 121 CLLERFLDRIRKEALKAISKAYRSIPLSYLAELL 154

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG3252|consensus	217		100.0
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	100.0
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	99.67
KOG4414|consensus	197		99.66
KOG3151|consensus	260		97.79
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	97.26
KOG1861|consensus	540		97.11
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	95.61
smart00753	88	PAM PCI/PINT associated module.	95.61
KOG0687|consensus	393		92.83
COG5187	412	RPN7 26S proteasome regulatory complex component,	91.2
KOG2581|consensus	493		88.67
KOG2758|consensus	432		86.06
PF07037	122	DUF1323: Putative transcription regulator (DUF1323	84.72
KOG2072|consensus	988		82.67
PF05687	150	DUF822: Plant protein of unknown function (DUF822)	81.39

>KOG3252|consensus

Probab=100.00  E-value=5.6e-81  Score=514.52  Aligned_cols=214  Identities=58%  Similarity=0.985  Sum_probs=211.0

Q ss_pred             hHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHhccccchHhhHHHHHhhhcCCC-CChHHHHHHHHHHhhcCCCcch
Q psy5242           3 QAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQN-YNMKITSQILLKALTNFPHTDF   81 (217)
Q Consensus         3 ~~~~~~~~i~~~l~g~~rYnp~~l~~Le~yv~~Q~~~~~Yd~~aNlalLKLYqfnP~-~~~~vv~~ILlkaL~~~P~~DF   81 (217)
                      ++|+|+..++++|.|++|||||||++||.||+.|+++|+||++||||+||||||||+ ||.++++.||+||||++|||||
T Consensus         2 ~feq~qs~~~e~l~ginryNPE~latLe~yVq~qak~ntYdleanL~vLkLYQfnP~~~nt~itaqILlKaL~~lP~tDF   81 (217)
T KOG3252|consen    2 QFEQMQSNVGELLVGINRYNPENLATLENYVQAQAKENTYDLEANLAVLKLYQFNPEFFNTTITAQILLKALTNLPHTDF   81 (217)
T ss_pred             cchHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHhccccchhHHHHHHHHHhcCHHHhhhHHHHHHHHHHHhcCCCcch
Confidence            689999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             hhhhhccCCCCCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhh
Q psy5242          82 ILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELL  161 (217)
Q Consensus        82 ~lc~~LIp~~~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~L  161 (217)
                      +||+||||++.+.++++++|+.||+.||+|+|+.||.+.+.+++++..|+||||+||+|+|||||.|||+|+++.|+++|
T Consensus        82 ~l~kcli~~~~~~ee~~r~ii~L~~~LEt~~Fq~FW~~~~~N~~mle~itGFedsvr~yachvv~iTyQkI~k~lLaell  161 (217)
T KOG3252|consen   82 TLAKCLIDERVQMEEPFRSIIDLGDYLETCRFQQFWQEADENRDMLEGITGFEDSVRKYACHVVGITYQKIDKWLLAELL  161 (217)
T ss_pred             hHHHHhcCHHHhcccchhHHHhHHHHHhhchHHHHhhhhccchHHhcCCCcHHHHHHHHHHHheechHhhchHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccchHHHHhhhc
Q psy5242         162 DGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN  216 (217)
Q Consensus       162 G~ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~~~~~~~~~~  216 (217)
                      |+++|++++.|++++||..+++|++|++++|.++|+|||.|||+||+|+++|++.
T Consensus       162 G~~sDs~le~~~~~~GW~a~e~G~ifv~~qE~~iKtkNi~EkI~fd~Va~ima~~  216 (217)
T KOG3252|consen  162 GGLSDSQLEVWMTKYGWIADESGQIFVASQEEEIKTKNIVEKIDFDHVASIMASL  216 (217)
T ss_pred             CcccHHHHHHHHHHccceecCCceEEEeccccccccCCccccCCcchHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999864

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=100.00  E-value=2e-35  Score=237.10  Aligned_cols=137  Identities=29%  Similarity=0.503  Sum_probs=113.0

Q ss_pred             ChHHHHHHHHHHhhcCCCcchhhhhhccCCCCCC-CccHHHHHHHHHHHHhCChHHHHHHhhcC---CchhhhccchHHH
Q psy5242          61 NMKITSQILLKALTNFPHTDFILCKCLLSKDLCK-EDPIDQIIYLADLLESCKFTQFWSRMHTI---PDLFLNIEGFNDS  136 (217)
Q Consensus        61 ~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~-~~~i~~l~~L~~lLe~c~F~~FW~~l~~~---~~l~~~i~gFed~  136 (217)
                      ++++++.+|+|+|++.|.+||.+|.++||++++. +|+|+.+|.|+++||+|+|++||+.++++   +++...|+||+|+
T Consensus         3 ~~~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   82 (143)
T PF10075_consen    3 NPEIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDT   82 (143)
T ss_dssp             -HHHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHH
T ss_pred             chhHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999987 59999999999999999999999999986   8899999999999


Q ss_pred             HHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcCceEeCCceEEeCCCCccccccc
Q psy5242         137 IRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKN  199 (217)
Q Consensus       137 IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~  199 (217)
                      ||++|+++|+.||++|+.+.+++||| ++++++.++++++||++++++++++.||+ ++|+||
T Consensus        83 iR~~i~~~i~~aY~sIs~~~la~~Lg-~~~~el~~~~~~~gW~~d~~~~~~~~~~~-~~k~k~  143 (143)
T PF10075_consen   83 IRERIAHLISKAYSSISLSDLAEMLG-LSEEELEKFIKSRGWTVDGDGVLFPPNPE-EIKSKN  143 (143)
T ss_dssp             HHHHHHHHHHHH-SEE-HHHHHHHTT-S-HHHHHHHHHHHT-EE-----EE---HH-HTS---
T ss_pred             HHHHHHHHHHHHHhHcCHHHHHHHhC-CCHHHHHHHHHHcCCEECCCccEEecCCc-ccCCCC
Confidence            99999999999999999999999998 88999999999999999988899999999 899886

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=99.67  E-value=2e-16  Score=132.28  Aligned_cols=144  Identities=22%  Similarity=0.305  Sum_probs=114.3

Q ss_pred             cCCCCCchhHHH-------------------HHHHHHHhccccchHh-------hHHHHH-----------hhhcC----
Q psy5242          19 ERYNPEHLSTLE-------------------KYVEVQCAENVYDLEA-------NLAVLK-----------LYQFH----   57 (217)
Q Consensus        19 ~rYnp~~l~~Le-------------------~yv~~Q~~~~~Yd~~a-------NlalLK-----------LYqfn----   57 (217)
                      |++||+.+-.++                   +|+.+|.+.--+|+.+       .+.++.           ++||+    
T Consensus         1 ~~p~p~~vRp~~vL~~t~~~l~~~~~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~~d~~qf~~c~~   80 (204)
T PF03399_consen    1 DEPNPSDVRPPEVLKKTLNYLLRKIPFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIESGDLEQFNQCLS   80 (204)
T ss_dssp             ----------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHhCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            688999998888                   9999999999999999       999999           99999    


Q ss_pred             -------------CC-CChHHHHHHHHHHhhcCCCcchhhhhhccCCCCCCCccHHHHHHHHHHHHhCChHHHHHHh--h
Q psy5242          58 -------------QN-YNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRM--H  121 (217)
Q Consensus        58 -------------P~-~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~c~F~~FW~~l--~  121 (217)
                                   |. ...++++..|+..|++-+.+||..++..+|+....+|.|+....+...+.+++|..||..+  +
T Consensus        81 ~L~~lY~~~~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~~  160 (204)
T PF03399_consen   81 QLKELYDDLRDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRSK  160 (204)
T ss_dssp             HHHHHHHHHHHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT-T
T ss_pred             HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence                         88 9999999999999999999999999999998888999999999999999999999999999  4


Q ss_pred             cCCchhhh-ccchHHHHHHHHHHHHHHhccc-ccHHHHHHhhc
Q psy5242         122 TIPDLFLN-IEGFNDSIRKFVCHVVGITFQT-IDKKLLSELLD  162 (217)
Q Consensus       122 ~~~~l~~~-i~gFed~IR~~I~~vVs~tyqs-Is~~~La~~LG  162 (217)
                      +.+.+... +..|.+.||..+++.++.||++ |+++.|++|||
T Consensus       161 ~~~~l~~~l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~  203 (204)
T PF03399_consen  161 SAPYLFACLMERFFNRIRLRALQSISKAYRSSIPLSFLAELLG  203 (204)
T ss_dssp             TS-HHHHHHHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcC
Confidence            44544444 4449999999999999999999 99999999997

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG4414|consensus

Probab=99.66  E-value=1e-16  Score=129.46  Aligned_cols=106  Identities=11%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             Ccchhhhhhc---cCCCCC-CCccHHHHHHHHHHHHhCChHHHHHHhhcC---CchhhhccchHHHHHHHHHHHHHHhcc
Q psy5242          78 HTDFILCKCL---LSKDLC-KEDPIDQIIYLADLLESCKFTQFWSRMHTI---PDLFLNIEGFNDSIRKFVCHVVGITFQ  150 (217)
Q Consensus        78 ~~DF~lc~~L---Ip~~~~-~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~---~~l~~~i~gFed~IR~~I~~vVs~tyq  150 (217)
                      +.|..-..+|   ||+.++ ..||+..+|.+|+.+|+++|++.+++++..   .+....|..|.|..|+|.+.++.++|+
T Consensus        52 ~dD~dnARfLWKRIP~AIKe~k~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak~imaAf~D~~~kR~FaLl~qAYs  131 (197)
T KOG4414|consen   52 HDDCDNARFLWKRIPPAIKEAKPELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAKDIMAAFRDATRKRAFALLLQAYS  131 (197)
T ss_pred             hccchhHHHHHHhCCHHHhhcCchhhhhhhhhHHHHhcccchHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444443   889988 678999999999999999999999999984   678899999999999999999999999


Q ss_pred             cccHHHHHHhhcCCCHHHHHHHHHHcCceEeCCc
Q psy5242         151 TIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNG  184 (217)
Q Consensus       151 sIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~g  184 (217)
                      +|..++++.||| |++++..+.+.++||++|...
T Consensus       132 sI~~~D~A~FlG-l~~ddAtk~ilEnGWqaDaas  164 (197)
T KOG4414|consen  132 SIIADDFAAFLG-LPEDDATKGILENGWQADAAS  164 (197)
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHcccchhhHH
Confidence            999999999998 999999999999999997654

>KOG3151|consensus

Probab=97.79  E-value=9e-05  Score=64.45  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhcCCCcchhhhhhccCCCCCCC-ccHHHHHHHHHHHHhCChHHHHHHhhcCC--chhhhccchHHHHHHHH
Q psy5242          65 TSQILLKALTNFPHTDFILCKCLLSKDLCKE-DPIDQIIYLADLLESCKFTQFWSRMHTIP--DLFLNIEGFNDSIRKFV  141 (217)
Q Consensus        65 v~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~-~~i~~l~~L~~lLe~c~F~~FW~~l~~~~--~l~~~i~gFed~IR~~I  141 (217)
                      +.-=|+--|.+=--+||-.-+-++|...+.+ |-|...+.|-+.+=...|.+.|.+.++.+  .+.--|.=..+.||..|
T Consensus       103 ~GLnLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~s~p~~~y~~FmdIl~~tiRdEI  182 (260)
T KOG3151|consen  103 LGLNLLYLLSQNRIAEFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQSIPSEEYTYFMDILLDTIRDEI  182 (260)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            3333444444445699999999999998744 78899999999999999999999998864  34444555568899999


Q ss_pred             HHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcCceEeCCce
Q psy5242         142 CHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGY  185 (217)
Q Consensus       142 ~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~g~  185 (217)
                      +.++-.+|..|+.++-..+|+.-++++++++..+.+|.++..++
T Consensus       183 A~c~EKsYd~l~~s~a~~~L~f~~~~e~~~~~~~r~W~l~~~~~  226 (260)
T KOG3151|consen  183 AGCIEKSYDKLSASDATQMLLFNNDKELKKFATERQWPLDEKGV  226 (260)
T ss_pred             HHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHhcCCccccccc
Confidence            99999999999999999999755678999999999999975443

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=97.26  E-value=0.0022  Score=47.19  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHhhcC-------CchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHH
Q psy5242         100 QIIYLADLLESCKFTQFWSRMHTI-------PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLW  172 (217)
Q Consensus       100 ~l~~L~~lLe~c~F~~FW~~l~~~-------~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~  172 (217)
                      .+..|-+.+.+++|..|-+.++..       +.+...+..+...+|+..+.-++..|++|+.+.+++.+| ++.++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~-~~~~~vE~~   80 (105)
T PF01399_consen    2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQ-LSEEEVESI   80 (105)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHT-CCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhc-cchHHHHHH
Confidence            355677889999999999888765       344567788899999999999999999999999999997 999999999


Q ss_pred             HHH
Q psy5242         173 VKK  175 (217)
Q Consensus       173 v~~  175 (217)
                      +.+
T Consensus        81 l~~   83 (105)
T PF01399_consen   81 LID   83 (105)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG1861|consensus

Probab=97.11  E-value=0.0063  Score=57.74  Aligned_cols=167  Identities=13%  Similarity=0.131  Sum_probs=122.2

Q ss_pred             chhHHHHHHHHHHhcc-ccchHhhHHHHH-hhhcCCC-CChHHHHHHHHHHhhcCCCcchhhhhhccCCCCCCCccHHHH
Q psy5242          25 HLSTLEKYVEVQCAEN-VYDLEANLAVLK-LYQFHQN-YNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQI  101 (217)
Q Consensus        25 ~l~~Le~yv~~Q~~~~-~Yd~~aNlalLK-LYqfnP~-~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~~~i~~l  101 (217)
                      .+.+-|-+-+..+++| .=.+.-+.+-|| ||-+.-. --.+-++.-+|=-+--=-.+|.+..+.=|.+..+++|-|.-.
T Consensus       347 TveVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hA  426 (540)
T KOG1861|consen  347 TVEVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHA  426 (540)
T ss_pred             eeeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHH
Confidence            3445555555566654 223344556666 6744333 334444444444443333459999999999999999999999


Q ss_pred             HHHHHHHHhCChHHHHHHhhcCCchh-hhccchHHHHHHHHHHHHHHhcc-cccHHHHHHhhcCCCHHHHHHHHHHcCce
Q psy5242         102 IYLADLLESCKFTQFWSRMHTIPDLF-LNIEGFNDSIRKFVCHVVGITFQ-TIDKKLLSELLDGVEDSTLRLWVKKYGWK  179 (217)
Q Consensus       102 ~~L~~lLe~c~F~~FW~~l~~~~~l~-~~i~gFed~IR~~I~~vVs~tyq-sIs~~~La~~LG~ls~~el~~~v~~~GWt  179 (217)
                      ..+....-..+|-.|+..+..-+.+- -.|.-|.|.-|+.++.++..+|+ +|+.+-+++.|...+.++...|..+++|+
T Consensus       427 L~vR~A~~~GNY~kFFrLY~~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~~~e~c~~~l~~~~~~  506 (540)
T KOG1861|consen  427 LEVRSAVTLGNYHKFFRLYLTAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFDSMEDCVNFLNEQNLT  506 (540)
T ss_pred             HHHHHHHHhccHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhchHHHHHHHHhccCcc
Confidence            99999999999999999997644432 35678999999999999999999 99999999999644448899999999999


Q ss_pred             EeCCc-eEEeCCC
Q psy5242         180 ELDNG-YIFIANQ  191 (217)
Q Consensus       180 ~~~~g-~v~p~n~  191 (217)
                      -+..| .+.+.|.
T Consensus       507 ~~~~g~~~~~~~~  519 (540)
T KOG1861|consen  507 YDSLGPQILDKNA  519 (540)
T ss_pred             ccccCCccccccc
Confidence            87655 5555554

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=95.61  E-value=0.029  Score=40.57  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cC---ceEeC-CceEEeCC
Q psy5242         130 IEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YG---WKELD-NGYIFIAN  190 (217)
Q Consensus       130 i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~G---Wt~~~-~g~v~p~n  190 (217)
                      ++.+...+|...+.-++.+|++|+.+.+++.+| ++.++++.++.+   .|   .++|. +|.+....
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~-l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~   69 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLG-LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEE   69 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC-cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECC
Confidence            456788899999999999999999999999997 899999999885   33   66764 45554433

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=95.61  E-value=0.029  Score=40.57  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             ccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cC---ceEeC-CceEEeCC
Q psy5242         130 IEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YG---WKELD-NGYIFIAN  190 (217)
Q Consensus       130 i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~G---Wt~~~-~g~v~p~n  190 (217)
                      ++.+...+|...+.-++.+|++|+.+.+++.+| ++.++++.++.+   .|   .++|. +|.+....
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~-l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~   69 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLG-LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEE   69 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC-cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECC
Confidence            456788899999999999999999999999997 899999999885   33   66764 45554433

>KOG0687|consensus

Probab=92.83  E-value=0.93  Score=41.82  Aligned_cols=95  Identities=13%  Similarity=0.222  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhCChHHHHHHhhcC-------Cchh-hhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH----
Q psy5242          99 DQIIYLADLLESCKFTQFWSRMHTI-------PDLF-LNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED----  166 (217)
Q Consensus        99 ~~l~~L~~lLe~c~F~~FW~~l~~~-------~~l~-~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~----  166 (217)
                      +.+..+..-|-.|+|..|+..+...       ..+. +..-=|..-+|.++-.=+--+|++.+++.+|+-.| +|-    
T Consensus       257 ~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFg-VSVefiD  335 (393)
T KOG0687|consen  257 PSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFG-VSVEFID  335 (393)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence            3455667778899999999998431       1222 22233446688888888888999999999999998 885    


Q ss_pred             HHHHHHHHH-cCce-EeC-CceEEeCCCCcc
Q psy5242         167 STLRLWVKK-YGWK-ELD-NGYIFIANQDEN  194 (217)
Q Consensus       167 ~el~~~v~~-~GWt-~~~-~g~v~p~n~en~  194 (217)
                      .+|..||.. +=|. +|. +|+|....||+.
T Consensus       336 reL~rFI~~grL~ckIDrVnGVVEtNrpD~K  366 (393)
T KOG0687|consen  336 RELGRFIAAGRLHCKIDRVNGVVETNRPDEK  366 (393)
T ss_pred             hHHHHhhccCceeeeeecccceeecCCcccc
Confidence            467788775 4464 442 678888888773

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.20  E-value=0.99  Score=41.24  Aligned_cols=98  Identities=15%  Similarity=0.236  Sum_probs=73.1

Q ss_pred             CccHHHHHHHHHHHHhCChHHHHHHhhcC------Cc-h-hhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH
Q psy5242          95 EDPIDQIIYLADLLESCKFTQFWSRMHTI------PD-L-FLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED  166 (217)
Q Consensus        95 ~~~i~~l~~L~~lLe~c~F~~FW~~l~~~------~~-l-~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~  166 (217)
                      .+.++.|..|..-|..|+|.+|+-.+-..      ++ + -..+.=|..-+|+++-.-+--+|+..+++.+|+-.| +|-
T Consensus       267 ~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFg-VSV  345 (412)
T COG5187         267 SEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFG-VSV  345 (412)
T ss_pred             hhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ccH
Confidence            34568888999999999999887766431      22 2 233444566788888888889999999999999998 776


Q ss_pred             H----HHHHHHHH-cCceEeC--CceEEeCCCCc
Q psy5242         167 S----TLRLWVKK-YGWKELD--NGYIFIANQDE  193 (217)
Q Consensus       167 ~----el~~~v~~-~GWt~~~--~g~v~p~n~en  193 (217)
                      +    +|.+|+-+ +=|.+-+  +|+|....|||
T Consensus       346 ~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpde  379 (412)
T COG5187         346 EYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDE  379 (412)
T ss_pred             HHHhhhHHhhCCCCceeeeeecccceEeccCcch
Confidence            4    56777764 4576633  68999888887

>KOG2581|consensus

Probab=88.67  E-value=1  Score=42.61  Aligned_cols=168  Identities=14%  Similarity=0.224  Sum_probs=107.8

Q ss_pred             HHHHHHHHhcccc-CCCCCchhHHHHHHHHH-HhccccchHhhHHH------------HHhhhcCCC------CChHHHH
Q psy5242           7 MKGSVDQLLVGIE-RYNPEHLSTLEKYVEVQ-CAENVYDLEANLAV------------LKLYQFHQN------YNMKITS   66 (217)
Q Consensus         7 ~~~~i~~~l~g~~-rYnp~~l~~Le~yv~~Q-~~~~~Yd~~aNlal------------LKLYqfnP~------~~~~vv~   66 (217)
                      .+..++.++.... |=|-+...+|-.++-.- +.++.||--.+|-.            .-=|-||-.      .+-+-..
T Consensus       188 ~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~  267 (493)
T KOG2581|consen  188 IRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSAL  267 (493)
T ss_pred             HHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHH
Confidence            3445555555555 55677777777665544 44456666665532            222333332      1334556


Q ss_pred             HHHHHHhhcCCC----------cchhhhhhcc----CCCCC-CCc----cHHHHHHHHHHHHhCChHHHHHHhhcC----
Q psy5242          67 QILLKALTNFPH----------TDFILCKCLL----SKDLC-KED----PIDQIIYLADLLESCKFTQFWSRMHTI----  123 (217)
Q Consensus        67 ~ILlkaL~~~P~----------~DF~lc~~LI----p~~~~-~~~----~i~~l~~L~~lLe~c~F~~FW~~l~~~----  123 (217)
                      +-++.|+--.|+          .-..+|..|+    |++.. ..|    .+.--+.|.+.....+-+.|=+.+.++    
T Consensus       268 ~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f  347 (493)
T KOG2581|consen  268 EYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKF  347 (493)
T ss_pred             HHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            677888888885          1123344443    33322 233    566667899999999999999999875    


Q ss_pred             --CchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH-HHHHHHHHH
Q psy5242         124 --PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED-STLRLWVKK  175 (217)
Q Consensus       124 --~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~-~el~~~v~~  175 (217)
                        .+...-+..+.-.|=+--.+-||.+|++||..+.+.-|| ++. ++++-.|++
T Consensus       348 ~~D~ty~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~-l~Seed~EyiVak  401 (493)
T KOG2581|consen  348 QADGTYTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLG-LNSEEDAEYIVAK  401 (493)
T ss_pred             hhCCcchHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhc-CCCchhHHHHHHH
Confidence              344455666666666777888999999999999999998 555 557666664

>KOG2758|consensus

Probab=86.06  E-value=1.4  Score=40.69  Aligned_cols=48  Identities=15%  Similarity=0.309  Sum_probs=44.2

Q ss_pred             hhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         127 FLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       127 ~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      .+-...|.+.-|.+|+..-..-.|.|+.+.||.=| +|++++++.|+..
T Consensus       325 va~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kL-nm~~eeaErwivn  372 (432)
T KOG2758|consen  325 VALLDEFLENARLLIFETFCRIHQCITIDMLADKL-NMDPEEAERWIVN  372 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHh-cCCHHHHHHHHHH
Confidence            46677899999999999999999999999999999 5999999999875

>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length

Probab=84.72  E-value=1.2  Score=35.17  Aligned_cols=28  Identities=36%  Similarity=0.639  Sum_probs=25.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHcCceEe
Q psy5242         153 DKKLLSELLDGVEDSTLRLWVKKYGWKEL  181 (217)
Q Consensus       153 s~~~La~~LG~ls~~el~~~v~~~GWt~~  181 (217)
                      ..+.||+++| ++...+.+|+.+.||+-+
T Consensus         2 T~eELA~~tG-~srQTINrWvRkegW~T~   29 (122)
T PF07037_consen    2 TPEELAELTG-YSRQTINRWVRKEGWKTE   29 (122)
T ss_pred             CHHHHHHHhC-ccHHHHHHHHHhcCceec
Confidence            4578999998 899999999999999874

The function of this family is unknown.

>KOG2072|consensus

Probab=82.67  E-value=6.2  Score=40.40  Aligned_cols=53  Identities=19%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             CCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         123 IPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       123 ~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      .++..+.|+.+.+-+=.+.++-||+-|++|+.+.|..+--..+.-++++++.+
T Consensus       419 ~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v~  471 (988)
T KOG2072|consen  419 SPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLVE  471 (988)
T ss_pred             CCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHH
Confidence            46778899999999999999999999999999999888777788899998764

>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs)

Probab=81.39  E-value=1.4  Score=35.82  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             HHHHHHHHHcCceEeCCceEEe
Q psy5242         167 STLRLWVKKYGWKELDNGYIFI  188 (217)
Q Consensus       167 ~el~~~v~~~GWt~~~~g~v~p  188 (217)
                      +-|+++|.+.||+|++||..+.
T Consensus        49 eVLkALc~eAGw~Ve~DGTtyr   70 (150)
T PF05687_consen   49 EVLKALCREAGWTVEPDGTTYR   70 (150)
T ss_pred             HHHHHHHHhCCEEEccCCCeec
Confidence            5588889999999999997775

BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1rz4_A	226	Crystal Structure Of Human Eif3k Length = 226		5e-63

>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k Length = 226

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/217 (53%), Positives = 150/217 (69%), Gaps = 1/217 (0%)
Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E  + +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MAMFEQXRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60
Query: 61  -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCXIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120
Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E L  + DS L++W  KYGW 
Sbjct: 121 LDENXDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEXLGDLSDSQLKVWXSKYGWS 180
Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             ++G IFI +Q+E+IK KNI EKI+F++ ++I  S+
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIXASS 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	4e-92
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Length = 226

 Score =  268 bits (686), Expect = 4e-92
 Identities = 122/216 (56%), Positives = 160/216 (74%), Gaps = 1/216 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QN 59
           M   E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+   
Sbjct: 1   MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 60  YNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSR 119
           +   +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW 
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
             ++G IFI +Q+E+IK KNI EKI+F++ ++IM S
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMAS 216

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 33/225 (14%), Positives = 84/225 (37%), Gaps = 57/225 (25%)

Query: 24  EHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY--------NMKITSQILLKALTN 75
           + L+T + +  V C +    +E++L VL+  ++ + +        +  I + +L     +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 76  FPHTD--FILCKCLLSKDLCKEDPIDQIIYLADL-LESCKFTQFWSRMH-------TIPD 125
              +D   ++ K      L ++ P +  I +  + LE     +    +H        IP 
Sbjct: 399 VIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 126 LFLNIEGFNDSIRKFVCHVVG-------------------ITFQTIDKKL---------L 157
            F + +     + ++    +G                   + F+ +++K+          
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 158 SELLDGVEDSTLRLWVKKY------GWKELDNGYI-FIANQDENI 195
             +L+ ++   L+ + K Y       ++ L N  + F+   +EN+
Sbjct: 518 GSILNTLQQ--LKFY-KPYICDNDPKYERLVNAILDFLPKIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	100.0
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.4
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.39
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	98.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.54
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.93
1ufm_A	84	COP9 complex subunit 4; helix-turn-helix, structur	95.95
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.41
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	91.62

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=100.00  E-value=8.2e-77  Score=510.26  Aligned_cols=216  Identities=56%  Similarity=1.005  Sum_probs=209.2

Q ss_pred             CchHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHhccccchHhhHHHHHhhhcCCC-CChHHHHHHHHHHhhcCCCc
Q psy5242           1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQN-YNMKITSQILLKALTNFPHT   79 (217)
Q Consensus         1 ~~~~~~~~~~i~~~l~g~~rYnp~~l~~Le~yv~~Q~~~~~Yd~~aNlalLKLYqfnP~-~~~~vv~~ILlkaL~~~P~~   79 (217)
                      |+|+++|+++|+++|+|+|||||+++++||+||++|+.+++||++||||+||||||||+ ++.+++++||+||||++|++
T Consensus         1 ~~~~~~~~~~i~~~l~~~~rYnp~~l~~le~Yv~qq~~~~~YD~~anlalLklYq~~p~~~~~~ii~~iLlk~L~~~p~~   80 (226)
T 1rz4_A            1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHT   80 (226)
T ss_dssp             -CHHHHHHHHHHHHHHSGGGGCGGGHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTTST
T ss_pred             CCcchhhhHHHHHHHhccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             chhhhhhccCCCCCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHH
Q psy5242          80 DFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSE  159 (217)
Q Consensus        80 DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~  159 (217)
                      ||.+|+||||++++++|+|+++|.|+++||+|+|++||++++++++++..|+||+|+||++|+++|++||++|+++.+++
T Consensus        81 DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~  160 (226)
T 1rz4_A           81 DFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAE  160 (226)
T ss_dssp             HHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHH
T ss_pred             HHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccchHHHHhhhc
Q psy5242         160 LLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN  216 (217)
Q Consensus       160 ~LG~ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~~~~~~~~~~  216 (217)
                      |||+++++++++|++++||+++++|.++++|+||++|+|+|+|+|+||+|+++|++.
T Consensus       161 lLg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~  217 (226)
T 1rz4_A          161 MLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS  217 (226)
T ss_dssp             HTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC-
T ss_pred             HHcCCCHHHHHHHHHHCCCEECCCccEEeCCCcccccceeeeecccHHHHHHHHHHH
Confidence            998799999999999999999888888999999999999999999999999999875

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.2e-12  Score=112.94  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHhccccc-hHhhHHHHHhhhcCCC-------CChHHHHHHHHHHhhcCCCcchhhhhhccCCC---CCCC
Q psy5242          27 STLEKYVEVQCAENVYD-LEANLAVLKLYQFHQN-------YNMKITSQILLKALTNFPHTDFILCKCLLSKD---LCKE   95 (217)
Q Consensus        27 ~~Le~yv~~Q~~~~~Yd-~~aNlalLKLYqfnP~-------~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~---~~~~   95 (217)
                      .++|-.+..-++.+..+ ++-+.+-||-|-+.+.       -..++++-=||--|.+--.+||..-+-.||..   ++.+
T Consensus        60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d  139 (274)
T 4b4t_T           60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDD  139 (274)
T ss_dssp             -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcC
Confidence            57888888888876554 7778899998876543       23467777778888877889999999999964   4578


Q ss_pred             ccHHHHHHHHHHHHhCChHHHHHHhhcCCc----hhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHH
Q psy5242          96 DPIDQIIYLADLLESCKFTQFWSRMHTIPD----LFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRL  171 (217)
Q Consensus        96 ~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~----l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~  171 (217)
                      |-|+..+.|.+.|...+|..||+.+++.+.    +.--+.-|.+.||..|+..+..||.+|+.+.++++||.-+++|+.+
T Consensus       140 ~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~  219 (274)
T 4b4t_T          140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEK  219 (274)
T ss_dssp             HHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999987432    2346677889999999999999999999999999998667799999


Q ss_pred             HHHHcCceEeCCceEEeCCCC
Q psy5242         172 WVKKYGWKELDNGYIFIANQD  192 (217)
Q Consensus       172 ~v~~~GWt~~~~g~v~p~n~e  192 (217)
                      |+++.||++++++++|+..++
T Consensus       220 F~~~~gW~~~~~~v~F~~~~~  240 (274)
T 4b4t_T          220 FALERNWPIVNSKVYFNNQSK  240 (274)
T ss_dssp             HHHHTTCCCCSSCCCC-----
T ss_pred             HHHHcCCEEeCCEeEECCccc
Confidence            999999999877778875543

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.39  E-value=5.7e-12  Score=107.45  Aligned_cols=163  Identities=12%  Similarity=0.067  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHhcccc-chHhhHHHHHhhhcC--C-C-CChHHHHHHHHHHhhcCCCcchhhhhhccCCCC--CCCccHH
Q psy5242          27 STLEKYVEVQCAENVY-DLEANLAVLKLYQFH--Q-N-YNMKITSQILLKALTNFPHTDFILCKCLLSKDL--CKEDPID   99 (217)
Q Consensus        27 ~~Le~yv~~Q~~~~~Y-d~~aNlalLKLYqfn--P-~-~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~--~~~~~i~   99 (217)
                      .++|--...-++.+.. .++-..+-||-|=.+  | . ...++++--||--|..--.+||...+..+|+..  +++|-|+
T Consensus        57 ~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~  136 (229)
T 4b0z_A           57 NVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVE  136 (229)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHH
Confidence            3444444444444421 223344444433333  2 2 334555555555555556699999999999763  5789999


Q ss_pred             HHHHHHHHHHhCChHHHHHHhhcCC--chhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcC
Q psy5242         100 QIIYLADLLESCKFTQFWSRMHTIP--DLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYG  177 (217)
Q Consensus       100 ~l~~L~~lLe~c~F~~FW~~l~~~~--~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~G  177 (217)
                      ..+.|.+.+...+|..||+.+++.+  .....+.-|.+.+|..++..+..||.+|+.+.++++||.-+++++..|++++|
T Consensus       137 ~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~g  216 (229)
T 4b0z_A          137 WVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERG  216 (229)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence            9999999999999999999998864  23556778899999999999999999999999999998546789999999999


Q ss_pred             ceEeCCceEEeC
Q psy5242         178 WKELDNGYIFIA  189 (217)
Q Consensus       178 Wt~~~~g~v~p~  189 (217)
                      |+++++.++||.
T Consensus       217 w~i~dg~i~F~~  228 (229)
T 4b0z_A          217 WDIRDGVIYFPK  228 (229)
T ss_dssp             CEEETTEEECC-
T ss_pred             CEEeCCEEecCC
Confidence            999755466663

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=98.61  E-value=4.7e-07  Score=80.67  Aligned_cols=159  Identities=13%  Similarity=0.204  Sum_probs=119.3

Q ss_pred             CCCchhHHHHHHHHHH------hc--cccchHhhH--------HHHHhhhcC-----CC-CChHHHHHHHHHHhhcCCCc
Q psy5242          22 NPEHLSTLEKYVEVQC------AE--NVYDLEANL--------AVLKLYQFH-----QN-YNMKITSQILLKALTNFPHT   79 (217)
Q Consensus        22 np~~l~~Le~yv~~Q~------~~--~~Yd~~aNl--------alLKLYqfn-----P~-~~~~vv~~ILlkaL~~~P~~   79 (217)
                      |++.+.++|..+.--+      .+  ..||...|+        .|..+|.-.     +. -..+..+.-||-   ++-.+
T Consensus        54 ~~~~v~v~E~~aRf~i~~~~~L~~~~~~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~---~l~~~  130 (316)
T 3t5v_A           54 GPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLS---KIRDP  130 (316)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH---STTCT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH---Hhccc
Confidence            7888999999887642      22  367633222        234467641     22 334555554443   34467


Q ss_pred             chhhhhhccCCCCCCCccHHHHHHHHHHHHh---------------CChHHHHHHhhcC-Cch--hhhccchHHHHHHHH
Q psy5242          80 DFILCKCLLSKDLCKEDPIDQIIYLADLLES---------------CKFTQFWSRMHTI-PDL--FLNIEGFNDSIRKFV  141 (217)
Q Consensus        80 DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~---------------c~F~~FW~~l~~~-~~l--~~~i~gFed~IR~~I  141 (217)
                      |+.--+-.+|+++..+|.|+....+...+.+               .+|..||..+++. .++  ...+..|.+.+|..+
T Consensus       131 ~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~A  210 (316)
T 3t5v_A          131 QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYA  210 (316)
T ss_dssp             HHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHH
T ss_pred             hHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence            8888888889999899999998998888753               6799999999872 233  355777889999999


Q ss_pred             HHHHHHhc----ccccHHHHHHhhcCCCHHHHHHHHHHcCceEeCC
Q psy5242         142 CHVVGITF----QTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDN  183 (217)
Q Consensus       142 ~~vVs~ty----qsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~  183 (217)
                      +..++.||    .+++.+.|.++||.-+++++.+||+.+||++.++
T Consensus       211 L~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~  256 (316)
T 3t5v_A          211 LRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIING  256 (316)
T ss_dssp             HHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETT
T ss_pred             HHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeCC
Confidence            99999999    4899999999998556799999999999999754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00028  Score=64.39  Aligned_cols=129  Identities=15%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHhhcCCCcchhhhhhccCCC-----CCCCccHHHHHHHHHHHHhCChHHHHHHhhc--------CCchhh
Q psy5242          62 MKITSQILLKALTNFPHTDFILCKCLLSKD-----LCKEDPIDQIIYLADLLESCKFTQFWSRMHT--------IPDLFL  128 (217)
Q Consensus        62 ~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~-----~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~--------~~~l~~  128 (217)
                      .+++....|.|+..+|.+|+---  ++...     ....|.+..+..+-..+..|+|..||..+..        .+-+.+
T Consensus       247 ~~~~~y~~l~al~~~~r~~l~~~--v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~  324 (429)
T 4b4t_R          247 ESIATYASVTGLFTLERTDLKSK--VIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNR  324 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHS--SSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHH--HhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHH
Confidence            34555566667776766653211  11111     1234667788888889999999999987633        123445


Q ss_pred             hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cC---ceEe-CCceEEeCCCCc
Q psy5242         129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YG---WKEL-DNGYIFIANQDE  193 (217)
Q Consensus       129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~G---Wt~~-~~g~v~p~n~en  193 (217)
                      .+..|.+.||......+...|++|+.+.|++.|| ++.+++++++.+   .|   =++| .+|++....|++
T Consensus       325 h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~-~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~  395 (429)
T 4b4t_R          325 HADFFVREMRRKVYAQLLESYKTLSLKSMASAFG-VSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDN  395 (429)
T ss_dssp             THHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHT-SCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC---
T ss_pred             HHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC-cCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCc
Confidence            5778899999999999999999999999999997 999999888774   22   2455 467666544443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.93  E-value=0.0036  Score=57.07  Aligned_cols=126  Identities=10%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHhhcCCCcchhhhhhccCCC--CCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCc-------hhhhccc
Q psy5242          62 MKITSQILLKALTNFPHTDFILCKCLLSKD--LCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPD-------LFLNIEG  132 (217)
Q Consensus        62 ~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~--~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~-------l~~~i~g  132 (217)
                      .+++...+|.+|+.+.-+|+.--.  ..+.  ....|++..+..|.+....|++.+|=+.+..+.+       +...+..
T Consensus       220 ~~~lkYlvL~aLl~~~r~el~~~l--~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~  297 (394)
T 3txn_A          220 LTSLKYMLLCKIMLGQSDDVNQLV--SGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGT  297 (394)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHH--HSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHh--ccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            356777888888888877875311  1110  0157899999999999999999999888876421       2334567


Q ss_pred             hHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH-------cCceEe-CCceEEeCCC
Q psy5242         133 FNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK-------YGWKEL-DNGYIFIANQ  191 (217)
Q Consensus       133 Fed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~-------~GWt~~-~~g~v~p~n~  191 (217)
                      +.+.||.....-+...|++|+.+.+++.|| ++.+++++++.+       .| ++| .+|++....+
T Consensus       298 L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~-ls~~evE~~L~~lI~dg~I~a-~IDq~~giv~~~~~  362 (394)
T 3txn_A          298 LYDTMLEQNLCRIIEPYSRVQVAHVAESIQ-LPMPQVEKKLSQMILDKKFSG-ILDQGEGVLIVFEE  362 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSSCE-EEETTTTEEEECCC
T ss_pred             HHHHHHHHHHHHHhHhhceeeHHHHHHHHC-cCHHHHHHHHHHHHHCCCeeE-EEcCCCCEEEECCC
Confidence            788999999999999999999999999997 899999999875       23 565 3566555433

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47

Probab=95.95  E-value=0.0087  Score=43.06  Aligned_cols=44  Identities=9%  Similarity=0.108  Sum_probs=38.9

Q ss_pred             cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      .-+.+.+.+.-.+.++..|++|+.+.|+++|| ++.+++++++.+
T Consensus        10 ~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~-ls~~~vE~~ls~   53 (84)
T 1ufm_A           10 SILDRAVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQ   53 (84)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHC-cCHHHHHHHHHH
Confidence            45667788888888999999999999999997 999999999885

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.12  Score=44.45  Aligned_cols=81  Identities=9%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CCccHHHHHHHHHHHHhCChHHHHHHhhcC-------CchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH
Q psy5242          94 KEDPIDQIIYLADLLESCKFTQFWSRMHTI-------PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED  166 (217)
Q Consensus        94 ~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~-------~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~  166 (217)
                      ..+++.....+......+++..|=..+...       +-+...+..+.+.+|......+...|++|+.+.+++.|| ++.
T Consensus       292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~-~~~  370 (434)
T 4b4t_Q          292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIG-LDT  370 (434)
T ss_dssp             CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHT-CCH
T ss_pred             cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC-cCH
Confidence            456778888888888888888776666543       223455677888899999999999999999999999997 899


Q ss_pred             HHHHHHHHH
Q psy5242         167 STLRLWVKK  175 (217)
Q Consensus       167 ~el~~~v~~  175 (217)
                      +++++++.+
T Consensus       371 ~~~E~~l~~  379 (434)
T 4b4t_Q          371 QQVEGKLSQ  379 (434)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.2  Score=45.69  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhcCCCcchhhhhhccCCCCCCCccHHHHHHHHHHHHh---CChHHHHHHhhcC---Cch-------hhhc
Q psy5242          64 ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLES---CKFTQFWSRMHTI---PDL-------FLNI  130 (217)
Q Consensus        64 vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~---c~F~~FW~~l~~~---~~l-------~~~i  130 (217)
                      ....+++.++++-+.+++.-.++-+-..- .-++++....|.....+   .+|+.+.+.....   .++       ...+
T Consensus       260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  338 (445)
T 4b4t_P          260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW  338 (445)
T ss_dssp             HHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence            34456666666555555554443222111 12345555555555544   4677777766542   111       2234


Q ss_pred             cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      ..+.+++++.-+..++.-|++|+.+.|++.|| ++.+++++++.+
T Consensus       339 ~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~-l~~~evE~~ls~  382 (445)
T 4b4t_P          339 EDLQKRVIEHNLRVISEYYSRITLLRLNELLD-LTESQTETYISD  382 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC-cCHHHHHHHHHH
Confidence            56788899999999999999999999999997 999999999875

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.62  E-value=7.1  Score=34.80  Aligned_cols=136  Identities=11%  Similarity=0.110  Sum_probs=80.6

Q ss_pred             ccccchHhhHHHHHhhhcCCC--CChH----HHHHHHHHHhhcCCCcchhhhhhcc-CCCCCCCccHHHHHHHHHHHHhC
Q psy5242          39 ENVYDLEANLAVLKLYQFHQN--YNMK----ITSQILLKALTNFPHTDFILCKCLL-SKDLCKEDPIDQIIYLADLLESC  111 (217)
Q Consensus        39 ~~~Yd~~aNlalLKLYqfnP~--~~~~----vv~~ILlkaL~~~P~~DF~lc~~LI-p~~~~~~~~i~~l~~L~~lLe~c  111 (217)
                      ++.|+-...-++.-|..+.+.  .+.+    ....+++.||+.=--..|.=-+..- =.+.+..|+...+..|=+....+
T Consensus       182 ~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g  261 (393)
T 4b4t_O          182 KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVG  261 (393)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcC
Confidence            345554444455545445443  4333    3445555666543235554333321 12234667888888899999999


Q ss_pred             ChHHHHHHhhcCCchhhhccchHHHHHHHH--HHHHH----HhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         112 KFTQFWSRMHTIPDLFLNIEGFNDSIRKFV--CHVVG----ITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       112 ~F~~FW~~l~~~~~l~~~i~gFed~IR~~I--~~vVs----~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      ++.+|=+.++.+.+-.+......+.+++.+  ..++.    ..|++|+-+.+++.|| ++.++++.++.+
T Consensus       262 ~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~-i~~~evE~lli~  330 (393)
T 4b4t_O          262 DFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATH-LPKDNVEHLVMR  330 (393)
T ss_dssp             CHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHT-CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhC-cCHHHHHHHHHH
Confidence            999997665543222233333333333322  23333    3478899999999997 899999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1rz4a2	130	a.118.1.18 (A:2-131) Eukaryotic translation initia	1e-56
d1rz4a1	85	a.4.5.53 (A:132-216) Eukaryotic translation initia	4e-40

>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (441), Expect = 1e-56
 Identities = 73/125 (58%), Positives = 91/125 (72%), Gaps = 1/125 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
            E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+   +  
Sbjct: 3   FEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQT 62

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  +  
Sbjct: 63  TVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE 122

Query: 123 IPDLF 127
             DL 
Sbjct: 123 NMDLL 127

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (329), Expect = 4e-40
 Identities = 47/84 (55%), Positives = 67/84 (79%)

Query: 132 GFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQ 191
           GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW   ++G IFI +Q
Sbjct: 2   GFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQ 61

Query: 192 DENIKTKNITEKIEFENAATIMTS 215
           +E+IK KNI EKI+F++ ++IM S
Sbjct: 62  EESIKPKNIVEKIDFDSVSSIMAS 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1rz4a2	130	Eukaryotic translation initiation factor 3 subunit	100.0
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	99.97
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	96.3

>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-58  Score=362.71  Aligned_cols=129  Identities=57%  Similarity=0.981  Sum_probs=126.0

Q ss_pred             chHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHhccccchHhhHHHHHhhhcCCC-CChHHHHHHHHHHhhcCCCcc
Q psy5242           2 TQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQN-YNMKITSQILLKALTNFPHTD   80 (217)
Q Consensus         2 ~~~~~~~~~i~~~l~g~~rYnp~~l~~Le~yv~~Q~~~~~Yd~~aNlalLKLYqfnP~-~~~~vv~~ILlkaL~~~P~~D   80 (217)
                      +|+|+|+++|+++|+|+||||||++++||+||+.|+++|+||++||||+||||||||+ ++.++|++||+||||++|+||
T Consensus         1 ~~~e~~~~~i~~lL~gidRYNPe~l~~Le~YV~~Q~~~~~Ydl~aNLalLKLYQfnP~~~~~~vi~~ILlKALt~~P~~D   80 (130)
T d1rz4a2           1 AMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTD   80 (130)
T ss_dssp             CHHHHHHHHHHHHHHSGGGGCGGGHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTTSTH
T ss_pred             CHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCcCcCCHHHHHHHHHHHHHcCCHHH
Confidence            6999999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             hhhhhhccCCCCCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCchhhhc
Q psy5242          81 FILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNI  130 (217)
Q Consensus        81 F~lc~~LIp~~~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~l~~~i  130 (217)
                      |++|+||||++++++++|++|..|+++||+|+|+.||+.+++++++++.|
T Consensus        81 F~lc~~Li~~~~q~~e~i~~l~~L~~lLE~c~F~~FW~~~~~~~~l~~~v  130 (130)
T d1rz4a2          81 FTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGI  130 (130)
T ss_dssp             HHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTS
T ss_pred             HHHHHHHcChhcCCcHHHHHHHHHHHHHHhCCHHHHHHHHhhCHHHhccC
Confidence            99999999999999999999999999999999999999999999887654

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-32  Score=200.18  Aligned_cols=85  Identities=55%  Similarity=1.046  Sum_probs=80.4

Q ss_pred             cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccchHH
Q psy5242         131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAA  210 (217)
Q Consensus       131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~~~~  210 (217)
                      .||||+||+||||+|++|||+|+++.|++|||++++++|++|++++||+++++|.++|+||||++|+|+|+|+|+||+++
T Consensus         1 tGFedsIR~~i~~vv~iTyq~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~~~g~v~v~nqe~~iK~kni~EkI~fe~v~   80 (85)
T d1rz4a1           1 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVS   80 (85)
T ss_dssp             TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCHHHHH
T ss_pred             CcHHHHHHHHHHhheeeeeeEEcHHHHHHHhCCCCHHHHHHHHHHcCCEEcCCCEEEecChhhhcCccceeeeccHHHHH
Confidence            59999999999999999999999999999999889999999999999999988899999999999999999999999999


Q ss_pred             HHhhh
Q psy5242         211 TIMTS  215 (217)
Q Consensus       211 ~~~~~  215 (217)
                      ++|++
T Consensus        81 ~ima~   85 (85)
T d1rz4a1          81 SIMAS   85 (85)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99974

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0022  Score=44.53  Aligned_cols=44  Identities=9%  Similarity=0.108  Sum_probs=40.1

Q ss_pred             cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242         131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK  175 (217)
Q Consensus       131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~  175 (217)
                      +-++++|++.-.+.++..|++|+.+.|++.|| ++.++++.++.+
T Consensus        10 t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~-l~~~evE~~l~~   53 (84)
T d1ufma_          10 SILDRAVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQ   53 (84)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhceeeHHHHHHHHC-CCHHHHHHHHHH
Confidence            34788999999999999999999999999997 899999999885