Psyllid ID: psy5385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MQETNIGNARNDVTQAARPKTQETLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKPNEEPARTTCTKHC
Secondary Structure (PSIPRED)
cccccccccccHHHHHHcccccccccEEEcccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccccEEEEccccccccccccccccccccccHHHHccccccHHHHHcccccccccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHcHcccccccEEEcccEEEEcHHHHHcccEccccccccHHHHcccccEEEEEccccccHHHccccccccccccccccccEEEEEEEEcccccccHHHHHcccccccccccccEEEEEEEEEccHHHHHHHHccccccHHHHHccccccccccccccEEEccccc
Coil and Loop (DISEMBL)
mqetnignarndvtqaarpktQETLRYLHAPSVVLLTIRIARRytilspqssnlmnlCRTQTECLIVlvpngnklksikpniekwpssnrknrLEEVVLTRMRightrlthsylftrspqptcrcgdilTTVKHILtcpldiqlrsslpnppsltdettgvdakfkpneeparttctkhc
Flexible Loop (DISEMBL)
mqetnignarndvtqaarpktqetlrylhapsvVLLTIRIARRYTilspqssnlMNLCRTQTECLIVLVpngnklksikpniekwpssnrknrleEVVLTRmrightrlthsylftrspqptcRCGDILTTVKHILTCPLDIQlrsslpnppsltdettgvdakfkpneeparttctkhc
Low Complexity Region (SEG)
MQETNIGNARNDVTQAARPKTQETLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKPNEEPARTTCTKHC
Disordered region (IsUnstruct)
***********************TLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNI**********RLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQL************************************
Disordered Region (DISOPRED)
***********************TLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDA***PNEEPARTTCTKH*
Disordered Region (DISEMBL)
*********RNDVTQAARPKTQETLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKPNE***********
Disordered Region (DISPRO)
**********NDVTQAARPKTQETLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKPNEEPARTTCT*HC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQETNIGNARNDVTQAARPKTQETLRYLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKPNEEPARTTCTKHC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
328721829	152	PREDICTED: hypothetical protein LOC10057	0.505	0.598	0.380	4e-10
328696858	206	PREDICTED: hypothetical protein LOC10056	0.35	0.305	0.515	2e-09
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.4	0.18	0.486	4e-09
427791807	1212	Putative tick transposon, partial [Rhipi	0.372	0.055	0.426	8e-09
427791321	1210	Putative tick transposon, partial [Rhipi	0.377	0.056	0.420	9e-09
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.483	0.173	0.410	1e-08
443730613	233	hypothetical protein CAPTEDRAFT_206814 [	0.411	0.317	0.472	2e-08
189242251	1808	PREDICTED: similar to pol-like protein [	0.572	0.056	0.368	3e-08
270015744	879	hypothetical protein TcasGA2_TC004345 [T	0.566	0.116	0.370	4e-08
443682433	619	hypothetical protein CAPTEDRAFT_222606 [	0.288	0.084	0.480	7e-08

>gi|328721829|ref|XP_003247415.1| PREDICTED: hypothetical protein LOC100572018 [Acyrthosiphon pisum]

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 72  GNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTT 131
            NKL+ +K  + KW  S   +R E+ ++ R RIGH+ +THSYL T+ P+P C   +   T
Sbjct: 44  SNKLRIVKKTVSKWTYSENASRREQTIINRARIGHSNITHSYLITKEPRPNCDTCNTPLT 103

Query: 132 VKH-ILTCPLDIQLRSSLPNPPSLTDETTGVD 162
           ++H I+ CP     R  L NP SL +    V+
Sbjct: 104 IEHIIINCPKFASSRHLLKNPSSLEEALIQVN 135

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 74  KLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLT-HSYLFTRSPQPTCRCGDILTTV 132
           KL  IK   ++W + +  NR EEV+LTR+RIGHTR T H YL +R  QPTC    +  T+
Sbjct: 97  KLSEIKRTTDRWKNKSNLNRKEEVILTRLRIGHTRYTLHGYLMSREDQPTCATCGVHLTI 156

Query: 133 KHIL 136
           KHIL
Sbjct: 157 KHIL 160

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 73  NKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCR-CGDILTT 131
           NKL  I+P + KW  S+R+ R EE+VL R RIGH+ LTH YL  R   P C  C +IL +
Sbjct: 162 NKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQNIL-S 220

Query: 132 VKHILT--CPLDIQLR 145
           +KHI       DI LR
Sbjct: 221 IKHIFIECVDFDILLR 236

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 73   NKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTC-RCGDILTT 131
            NKL  +KP + +W +   + R  EV+L R+RIGHT LTH++L T+  QP C +C + LT 
Sbjct: 1097 NKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTL 1156

Query: 132  VKHILTCP 139
            +  ++ CP
Sbjct: 1157 IHILILCP 1164

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 72   GNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTC-RCGDILT 130
             NKL  +KP + +W +   + R  EV+L R+RIGHT LTH++L T+  QP C +C + LT
Sbjct: 1093 SNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLT 1152

Query: 131  TVKHILTCP 139
             +  ++ CP
Sbjct: 1153 LIHILILCP 1161

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 73  NKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTV 132
           NKL SI+P I +W    + +R  E+VL R RIGH+ LTH YL  R   P C     L TV
Sbjct: 241 NKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRREVAPFCIPCQSLLTV 300

Query: 133 KHILTCPLDIQLRSSLPNPPSLTDETTGVDAKFKP 167
           KHIL   +D ++        SLT    G  + F P
Sbjct: 301 KHILIDCIDFKM--------SLTYLQYGPFSSFAP 327

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 45/74 (60%)

Query: 71  NGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILT 130
             NKL S++P I+K  +S+R++R +E+VL R RIGHT LTH YL  R   P C       
Sbjct: 140 QNNKLHSVQPIIKKLTNSSREDRRKEIVLARARIGHTHLTHGYLLRRELPPFCVHCQCPL 199

Query: 131 TVKHILTCPLDIQL 144
           TVKHIL   +D  L
Sbjct: 200 TVKHILIECVDFYL 213

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|189242251|ref|XP_001808188.1| PREDICTED: similar to pol-like protein [Tribolium castaneum]

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 22/125 (17%)

Query: 73   NKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTV 132
            +KL+   P+I+KWP SN K R EEV + R+R+GHTRLT  Y   +   PTC   +   TV
Sbjct: 1393 SKLREAYPDIKKWPPSNLK-RGEEVTINRLRLGHTRLTQEYHLKKVDPPTCCYCEGRLTV 1451

Query: 133  KHI-LTCPL--DIQLRSSLPN--------------PPSLTDETTGVDAKFKPNEEPARTT 175
            +HI L CP   DI+  ++ PN                 LTD       +F   +   R  
Sbjct: 1452 RHILLECPKYHDIRNEANFPNRMEDILSPKNEAMIKSYLTDRVV----EFTQGDVSVRKF 1507

Query: 176  CTKHC 180
            CTK C
Sbjct: 1508 CTKGC 1512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015744|gb|EFA12192.1| hypothetical protein TcasGA2_TC004345 [Tribolium castaneum]

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 22/124 (17%)

Query: 74  KLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTCRCGDILTTVK 133
           KL+   P+I+KWP SN K R EEV + R+R+GHTRLT  Y   +   PTC   +   TV+
Sbjct: 465 KLREAYPDIKKWPPSNLK-RGEEVTINRLRLGHTRLTQEYHLKKVDPPTCCYCEGRLTVR 523

Query: 134 HI-LTCPL--DIQLRSSLPN--------------PPSLTDETTGVDAKFKPNEEPARTTC 176
           HI L CP   DI+  ++ PN                 LTD       +F   +   R  C
Sbjct: 524 HILLECPKYHDIRNEANFPNRMEDILSPKNEAMIKSYLTDRV----VEFTQGDVSVRKFC 579

Query: 177 TKHC 180
           TK C
Sbjct: 580 TKGC 583

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 72  GNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLFTRSPQPTC 123
           GNKL  I+P+I  WP   R+ R +E+V+ R+RIGHT LT+S+L + +  P C
Sbjct: 154 GNKLHDIEPDIGSWPPCQREKRRDEIVIARLRIGHTFLTYSHLLSGNDAPMC 205

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	97.97
PRK08719	147	ribonuclease H; Reviewed	97.75
PRK00203	150	rnhA ribonuclease H; Reviewed	97.66
PRK06548	161	ribonuclease H; Provisional	97.39
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	96.92
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	96.6
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	94.95

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=97.97  E-value=4.8e-06  Score=62.34  Aligned_cols=28  Identities=14%  Similarity=0.042  Sum_probs=25.3

Q ss_pred             ccCCceEEEEecccccc-chh-HHHHhhhc
Q psy5385          20 KTQETLRYLHAPSVVLL-TIR-IARRYTIL   47 (180)
Q Consensus        20 ~~~~~V~l~WIP~H~gi-pGN-~ADr~A~~   47 (180)
                      ..+..|+|.|||||+|+ .|| .||++|+.
T Consensus       100 ~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~  129 (132)
T PF00075_consen  100 SRGIKVRFRWVPGHSGVPQGNERADRLAKE  129 (132)
T ss_dssp             HHSSEEEEEESSSSSSSHHHHHHHHHHHHH
T ss_pred             ccceEEeeeeccCcCCCchhHHHHHHHHHH
Confidence            56899999999999999 599 99999964

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>PRK08719 ribonuclease H; Reviewed

Probab=97.75  E-value=1.5e-05  Score=63.19  Aligned_cols=31  Identities=3%  Similarity=-0.139  Sum_probs=25.7

Q ss_pred             cccccCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          17 ARPKTQETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        17 ~l~~~~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      ++.+ ...|+|.|||||+|++|| .||++|+.+
T Consensus       113 ~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a  144 (147)
T PRK08719        113 ELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAA  144 (147)
T ss_pred             HHhC-CCcEEEEEecCCCCChhHHHHHHHHHHH
Confidence            3444 466999999999999999 999999653

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=97.66  E-value=3.2e-05  Score=60.88  Aligned_cols=26  Identities=0%  Similarity=-0.082  Sum_probs=23.7

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhc
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      ...|.|.|||||+|++|| .||++|+.
T Consensus       112 ~~~v~~~wV~~H~~~~~N~~AD~lA~~  138 (150)
T PRK00203        112 RHQIKWHWVKGHAGHPENERCDELARA  138 (150)
T ss_pred             cCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            478999999999999999 99999864

>PRK06548 ribonuclease H; Provisional

Probab=97.39  E-value=0.0001  Score=59.67  Aligned_cols=25  Identities=8%  Similarity=-0.021  Sum_probs=23.0

Q ss_pred             CceEEEEeccccccchh-HHHHhhhc
Q psy5385          23 ETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        23 ~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      ..|+|.|||||.|++|| .||++|+.
T Consensus       113 ~~v~~~wVkgHsg~~gNe~aD~LA~~  138 (161)
T PRK06548        113 RNIRMSWVNAHTGHPLNEAADSLARQ  138 (161)
T ss_pred             CceEEEEEecCCCCHHHHHHHHHHHH
Confidence            47999999999999999 99999864

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=96.92  E-value=0.00066  Score=48.11  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=26.0

Q ss_pred             ccccCCceEEEEeccccccchh-HHHHhhhc
Q psy5385          18 RPKTQETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        18 l~~~~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      +.+....++|.|||+|+|+++| .||.+|+.
T Consensus        98 ~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~  128 (130)
T cd06222          98 LLKRFHKVRFEWVPGHSGIEGNERADALAKE  128 (130)
T ss_pred             HHhCCCeEEEEEcCCCCCCcchHHHHHHHHh
Confidence            3346788999999999999999 99999864

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=96.60  E-value=0.0014  Score=53.04  Aligned_cols=31  Identities=10%  Similarity=-0.136  Sum_probs=25.9

Q ss_pred             cccccCCceEEEEeccccccchh-HHHHhhhc
Q psy5385          17 ARPKTQETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        17 ~l~~~~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      ++.++--.|.+.|||||.|.|+| .||++|..
T Consensus       110 ~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~  141 (154)
T COG0328         110 ELLKRHELVFWEWVKGHAGHPENERADQLARE  141 (154)
T ss_pred             HHHhhCCeEEEEEeeCCCCChHHHHHHHHHHH
Confidence            45445558999999999999999 99998864

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=94.95  E-value=0.013  Score=41.83  Aligned_cols=27  Identities=30%  Similarity=0.787  Sum_probs=22.6

Q ss_pred             CCCCCCCcc-cCCcccchhhh-hcCcccH
Q psy5385         116 TRSPQPTCR-CGDILTTVKHI-LTCPLDI  142 (180)
Q Consensus       116 ~~~d~p~C~-Cg~~~QTv~HI-~eCp~~~  142 (180)
                      +...++.|. |+...+|+.|+ ++||...
T Consensus        55 ~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   55 GIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             CCccCCccccCCCccccccceeccCcCcc
Confidence            446789999 99866699999 9999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 9e-07
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 60/208 (28%)

Query: 18  RPKTQETLR-YL----HAPSVVL----------LTIRIARRYTILSPQSSNL--MNL--C 58
           R +    LR  L     A +V++          + + +   Y +       +  +NL  C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 59  RTQTECLIVLVPNGNKLKSIKPNIEKWP--SSNRKNRLEEVVLTRMRIGHTRLTHSYLFT 116
            +    L +L      L  I PN       SSN K R+  +           L    L  
Sbjct: 193 NSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSI--------QAEL--RRLLK 239

Query: 117 RSPQPTC------------------RCGDILTTVKHILTCPLDIQLRSSLP---NPPSLT 155
             P   C                   C  +LTT    +T  L     + +    +  +LT
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 156 -DETTGVDAKF---KPNEEPARTTCTKH 179
            DE   +  K+   +P + P R   T +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP-REVLTTN 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	97.98
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	97.89
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	97.8
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	97.8
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	97.79
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	97.78
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	97.62
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	97.55
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	92.32
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	91.42
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	90.53

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=97.98  E-value=2.7e-06  Score=66.11  Aligned_cols=29  Identities=7%  Similarity=-0.027  Sum_probs=26.0

Q ss_pred             ccCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          20 KTQETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        20 ~~~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      .....|.|.|||||.|++|| .||++|+.+
T Consensus       115 ~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a  144 (150)
T 3qio_A          115 IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG  144 (150)
T ss_dssp             TTCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred             hhcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence            35778999999999999999 999999765

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=97.89  E-value=4.5e-06  Score=63.53  Aligned_cols=26  Identities=8%  Similarity=-0.050  Sum_probs=22.6

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhc
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      +..|+|.|||||+|++|| .||++|+.
T Consensus       114 ~~~v~~~~V~gH~g~~~N~~AD~LA~~  140 (146)
T 3h08_A          114 LHRVTFHKVKGHSDNPYNSRADELARL  140 (146)
T ss_dssp             HSEEEEEECCC-CCSHHHHHHHHHHHH
T ss_pred             hCceEEEEcCCcCCcHhHHHHHHHHHH
Confidence            457999999999999999 99999964

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=97.80  E-value=3.3e-06  Score=65.07  Aligned_cols=25  Identities=0%  Similarity=-0.180  Sum_probs=23.1

Q ss_pred             ceEEEEeccccccchh-HHHHhhhcC
Q psy5385          24 TLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        24 ~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      .|.|.|||||+|++|| .||++|+.+
T Consensus       109 ~v~~~wV~gH~g~~~Ne~AD~LA~~a  134 (147)
T 2kq2_A          109 IYSFEKVKAHSGNEFNDYVDMKAKSA  134 (147)
T ss_dssp             TCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred             CeeEEEecCcCCCcchHHHHHHHHHH
Confidence            8999999999999999 999999743

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=97.80  E-value=7.9e-06  Score=63.52  Aligned_cols=27  Identities=0%  Similarity=-0.124  Sum_probs=24.1

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      +..|.|.|||||.|++|| .||++|+.+
T Consensus       115 ~~~v~~~wV~gH~g~~~Ne~AD~LAk~a  142 (158)
T 2e4l_A          115 LHQIDWRWVKGHAGHAENERCDQLARAA  142 (158)
T ss_dssp             TSEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             cCcEEEEEccCCCCchhHHHHHHHHHHH
Confidence            468999999999999999 999998643

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=97.79  E-value=8.8e-06  Score=62.61  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=24.4

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      +..|.|.|||||.|++|| .||++|+.+
T Consensus       121 ~~~v~~~~V~~H~g~~~N~~AD~LA~~a  148 (154)
T 2qkb_A          121 GMDIQWMHVPGHSGFIGNEEADRLAREG  148 (154)
T ss_dssp             TCEEEEEECCTTSSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEccCCCCCHhHHHHHHHHHHH
Confidence            567999999999999999 999999754

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=97.78  E-value=8.7e-06  Score=63.00  Aligned_cols=27  Identities=7%  Similarity=-0.038  Sum_probs=24.1

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      +..|.|.|||||.|++|| .||++|+.+
T Consensus       113 ~~~v~~~wV~gH~g~~~Ne~AD~LA~~a  140 (155)
T 1jl1_A          113 QHQIKWEWVKGHAGHPENERADELARAA  140 (155)
T ss_dssp             TCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred             cCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999 999998643

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=97.62  E-value=2.1e-05  Score=62.24  Aligned_cols=28  Identities=14%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             cCCceEEEEeccccc-----cchh-HHHHhhhcC
Q psy5385          21 TQETLRYLHAPSVVL-----LTIR-IARRYTILS   48 (180)
Q Consensus        21 ~~~~V~l~WIP~H~g-----ipGN-~ADr~A~~s   48 (180)
                      .+..|.|.|||||.|     ++|| .||++|+.+
T Consensus       120 ~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~a  153 (165)
T 3p1g_A          120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREA  153 (165)
T ss_dssp             SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHH
Confidence            578899999999999     9999 999999643

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=97.55  E-value=1.7e-05  Score=62.30  Aligned_cols=27  Identities=7%  Similarity=-0.065  Sum_probs=24.0

Q ss_pred             CCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          22 QETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        22 ~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      +..|.|.|||||+|++|| .||++|+.+
T Consensus       118 ~~~v~~~wV~gH~g~~~Ne~AD~LAk~a  145 (166)
T 1ril_A          118 PHRVRFHFVKGHTGHPENERVDREARRQ  145 (166)
T ss_dssp             TSEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred             cCeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence            458999999999999999 999999743

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=92.32  E-value=0.062  Score=39.36  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=21.7

Q ss_pred             cccccCCceEEEEeccccccchh-HHHHhhhc
Q psy5385          17 ARPKTQETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        17 ~l~~~~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      ++.+....|+|.|||+    +|| .||++|+.
T Consensus       102 ~l~~~~~~v~~~~V~~----~~N~~AD~LA~~  129 (141)
T 3hst_B          102 ALASQFRRINYEWVPR----ARNTYADRLAND  129 (141)
T ss_dssp             HHHTTSSEEEEEECCG----GGCHHHHHHHHH
T ss_pred             HHHhcCCeEEEEEcCC----cccHHHHHHHHH
Confidence            4444568999999995    899 99999864

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=91.42  E-value=0.093  Score=38.06  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=20.0

Q ss_pred             cccCCceEEEEeccccccchh-HHHHhhhc
Q psy5385          19 PKTQETLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        19 ~~~~~~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      .+.-..|+|.|||+    +|| .||++|+.
T Consensus       108 ~~~~~~v~~~~V~~----~~N~~AD~LA~~  133 (140)
T 3u3g_D          108 MERVPNLVFVHIPR----EKNARADELVNE  133 (140)
T ss_dssp             HHHCTTCEEEECCG----GGGHHHHHHHHH
T ss_pred             hcCCCcEEEEEcCc----hhhHHHHHHHHH
Confidence            33345899999993    899 99999964

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=90.53  E-value=0.11  Score=38.91  Aligned_cols=20  Identities=15%  Similarity=0.187  Sum_probs=17.6

Q ss_pred             ceEEEEeccccccchh-HHHHhhhc
Q psy5385          24 TLRYLHAPSVVLLTIR-IARRYTIL   47 (180)
Q Consensus        24 ~V~l~WIP~H~gipGN-~ADr~A~~   47 (180)
                      .|+|.|||+    ++| .||++|+.
T Consensus       110 ~v~~~~V~~----~~N~~AD~LA~~  130 (149)
T 2ehg_A          110 NATLIWVPR----EENKEADRLSRV  130 (149)
T ss_dssp             TCEEEECCG----GGCHHHHHHHHH
T ss_pred             CEEEEEcCC----cccHHHHHHHHH
Confidence            599999999    599 99999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	98.45
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	98.23
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	98.22

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.2e-08  Score=73.32  Aligned_cols=28  Identities=7%  Similarity=-0.050  Sum_probs=24.8

Q ss_pred             cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          21 TQETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      ....|+|+|||||+|++|| .||++|+.+
T Consensus       110 ~~~~V~~~wV~gH~g~~gNe~AD~LAk~a  138 (152)
T d1jl1a_         110 GQHQIKWEWVKGHAGHPENERADELARAA  138 (152)
T ss_dssp             TTCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred             hcceeEEEEecccCCCccHHHHHHHHHHH
Confidence            4568999999999999999 999999743

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.23  E-value=2.3e-07  Score=67.63  Aligned_cols=28  Identities=7%  Similarity=-0.038  Sum_probs=24.9

Q ss_pred             cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          21 TQETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      ....|.|.|||||+|++|| .||++|+.+
T Consensus        97 ~~~~v~~~wV~gH~g~~gNe~AD~LA~~a  125 (126)
T d1mu2a1          97 KKEAIYVAWVPAHKGIGGNQEVDHLVSQG  125 (126)
T ss_dssp             HCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred             hcceeEEEEEeCCCCCcchHHHHHHHHhh
Confidence            4568999999999999999 999999753

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=1.3e-07  Score=70.37  Aligned_cols=28  Identities=7%  Similarity=-0.056  Sum_probs=24.8

Q ss_pred             cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385          21 TQETLRYLHAPSVVLLTIR-IARRYTILS   48 (180)
Q Consensus        21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s   48 (180)
                      ....|+|.|||||+|++|| .||++|+.+
T Consensus       112 ~~~~v~~~wVkgHsg~~gNe~AD~LAk~a  140 (147)
T d1rila_         112 APHRVRFHFVKGHTGHPENERVDREARRQ  140 (147)
T ss_dssp             TTSEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred             hhcccceEEccCCCCCcchHHHHHHHHHH
Confidence            4567999999999999999 999999743