Psyllid ID: psy5508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MFPITGWVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKADV
Secondary Structure (PSIPRED)
cccEEEEEEEcEEEEEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccHEEEEEccccccccccccHEEcccccEEcccccccccccccccccccccccccccEcccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MFPITGWVLLGSCFLVVSLQQLQHHQCRiseyacengrcisldrfcneyddcgdksdeprycsrsktALQKHITAVFCIVIKADV
Flexible Loop (DISEMBL)
mfpitgwvLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRsktalqkhiTAVFCIVIKADV
Low Complexity Region (SEG)
MFPITGWVLLGSCFLVVSlqqlqhhqCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKADV
Disordered region (IsUnstruct)
**PITGWVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDK****RYCSRSKTALQKHITAVFCIVIK***
Disordered Region (DISOPRED)
*FPITGWVLLGSCFLVVSLQQL****CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKAD*
Disordered Region (DISEMBL)
MFPITGWVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKADV
Disordered Region (DISPRO)
MFPITGWVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKADV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFPITGWVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCIVIKADV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
O75096	1905	Low-density lipoprotein r	yes	N/A	0.541	0.024	0.425	0.0004
P98164	4655	Low-density lipoprotein r	no	N/A	0.482	0.008	0.452	0.0009
P98158	4660	Low-density lipoprotein r	no	N/A	0.352	0.006	0.5	0.0009
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.541	0.024	0.425	0.0009

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 26  QCRISEYACENGRCISLDRFCNEYDDCGDKSDE-PRYCSRSKTALQK 71
           QC + ++ C NGRCI   + CN  +DCGD SDE P+   R +T  + 
Sbjct: 311 QCALDQFLCWNGRCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEEN 357

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.
Homo sapiens (taxid: 9606)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 25   HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSK 66
            H C  SE+ C +GRCI    +C++  DC D SDEP  C  S+
Sbjct: 2862 HTCSSSEFQCASGRCIPQHWYCDQETDCFDASDEPASCGHSE 2903

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 25   HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
            H CR + + C NGRC+     C+ Y+DCGD SDE
Sbjct: 2740 HTCRSTAFTCGNGRCVPYHYRCDYYNDCGDNSDE 2773

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 26  QCRISEYACENGRCISLDRFCNEYDDCGDKSDE-PRYCSRSKTALQK 71
           QC   ++ C NGRCI   + CN  +DCGD SDE P+   R +T  + 
Sbjct: 311 QCASDQFLCWNGRCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEEN 357

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
157127777	1318	hypothetical protein AaeL_AAEL002265 [Ae	0.576	0.037	0.510	1e-09
189240361	976	PREDICTED: similar to AGAP006059-PA [Tri	0.670	0.058	0.474	4e-09
242023213	1031	hypothetical protein Phum_PHUM565670 [Pe	0.623	0.051	0.456	5e-09
270013212	730	hypothetical protein TcasGA2_TC011786 [T	0.458	0.053	0.615	7e-09
158295850	1208	AGAP006444-PA [Anopheles gambiae str. PE	0.494	0.034	0.595	8e-09
270012436	96	hypothetical protein TcasGA2_TC006585 [T	0.682	0.604	0.466	1e-08
242012063	76	hypothetical protein Phum_PHUM274240 [Pe	0.447	0.5	0.657	1e-08
241836589	1203	conserved hypothetical protein [Ixodes s	0.505	0.035	0.581	2e-08
195012087	1132	GH15565 [Drosophila grimshawi] gi|193896	0.447	0.033	0.605	4e-08
198464439	1330	GA23669 [Drosophila pseudoobscura pseudo	0.447	0.028	0.578	5e-08

>gi|157127777|ref|XP_001661176.1| hypothetical protein AaeL_AAEL002265 [Aedes aegypti] gi|108882350|gb|EAT46575.1| AAEL002265-PA [Aedes aegypti]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 16  VVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
           V + Q+    QC +SE++C NGRC+ L+++CN  +DCGD SDEPR+C+R
Sbjct: 220 VAAAQKQSRRQCAMSEHSCNNGRCVPLNKYCNNVNDCGDGSDEPRFCTR 268

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240361|ref|XP_973209.2| PREDICTED: similar to AGAP006059-PA [Tribolium castaneum]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 7  WVLLGSCFLVVSLQQ--LQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63
          W+ +GS   ++ L Q       CRISE+ C NGRC+ L+ +C+  DDCGD SDEP YC+
Sbjct: 2  WLWVGSALFLLGLLQEATPGPACRISEFPCRNGRCVKLNAYCDGGDDCGDLSDEPLYCT 60

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023213|ref|XP_002432030.1| hypothetical protein Phum_PHUM565670 [Pediculus humanus corporis] gi|212517388|gb|EEB19292.1| hypothetical protein Phum_PHUM565670 [Pediculus humanus corporis]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 7  WVLLGSCFLVVSLQQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63
          +++L  C ++V         CRISE+ C+N +CI LDR+C++ +DCGDKSDEP +C+
Sbjct: 6  FLILSECIIIVQPVP----GCRISEFPCKNNKCIRLDRYCDKINDCGDKSDEPPFCT 58

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013212|gb|EFA09660.1| hypothetical protein TcasGA2_TC011786 [Tribolium castaneum]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
           C++SE+AC NGRCI L+++CN  +DCGD +DEPRYC+R
Sbjct: 25 NCKLSEFACNNGRCIPLNKYCNIVNDCGDSTDEPRYCTR 63

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295850|ref|XP_316483.4| AGAP006444-PA [Anopheles gambiae str. PEST] gi|157016230|gb|EAA11118.5| AGAP006444-PA [Anopheles gambiae str. PEST]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 23  QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
           Q  QC +SE+ C NGRCI  D++CN  +DCGD SDEPR+C+R
Sbjct: 120 QGKQCALSEHTCTNGRCIPWDKYCNNVNDCGDGSDEPRFCTR 161

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012436|gb|EFA08884.1| hypothetical protein TcasGA2_TC006585 [Tribolium castaneum]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 7  WVLLGSCFLVVSLQQ--LQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
          W+ +GS   ++ L Q       CRISE+ C NGRC+ L+ +C+  DDCGD SDEP YC+ 
Sbjct: 2  WLWVGSALFLLGLLQEATPGPACRISEFPCRNGRCVKLNAYCDGGDDCGDLSDEPLYCTE 61

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012063|ref|XP_002426760.1| hypothetical protein Phum_PHUM274240 [Pediculus humanus corporis] gi|212510942|gb|EEB14022.1| hypothetical protein Phum_PHUM274240 [Pediculus humanus corporis]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 34/38 (89%)

Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63
          +CR+SE+ C++G C++LDRFCN  +DCGDKSDEPRYC+
Sbjct: 20 KCRLSEFLCDSGHCVALDRFCNGENDCGDKSDEPRYCT 57

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241836589|ref|XP_002415108.1| conserved hypothetical protein [Ixodes scapularis] gi|215509320|gb|EEC18773.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 27  CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTAL 69
           CR+SE AC+NGRC++L R+C+  DDCGD SDEP  CS     L
Sbjct: 157 CRLSELACDNGRCVALSRYCDGSDDCGDGSDEPIGCSNCNRTL 199

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195012087|ref|XP_001983468.1| GH15565 [Drosophila grimshawi] gi|193896950|gb|EDV95816.1| GH15565 [Drosophila grimshawi]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
          C +SE++C NGRC+ L +FCN  +DCGD SDEPR+C+R
Sbjct: 52 CSLSEFSCSNGRCVPLSKFCNNNNDCGDGSDEPRFCTR 89

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198464439|ref|XP_002134778.1| GA23669 [Drosophila pseudoobscura pseudoobscura] gi|198149718|gb|EDY73405.1| GA23669 [Drosophila pseudoobscura pseudoobscura]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 27  CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
           C ++EY+C NGRC+ L ++CN  +DCGD SDEPR+C+R
Sbjct: 242 CSLAEYSCSNGRCVPLSKYCNNLNDCGDGSDEPRFCTR 279

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
ZFIN|ZDB-GENE-061103-613	864	st14b "suppression of tumorige	0.447	0.043	0.538	1.8e-06
FB|FBgn0052206	1260	CG32206 [Drosophila melanogast	0.647	0.043	0.4	2.9e-06
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.494	0.008	0.452	1.2e-05
ZFIN|ZDB-GENE-040426-1358	855	c6 "complement component 6" [D	0.458	0.045	0.487	1.6e-05
ZFIN|ZDB-GENE-100513-4	907	si:ch211-22d5.4 "si:ch211-22d5	0.458	0.042	0.487	3.7e-05
UNIPROTKB|F1N9Z9	939	C6 "Uncharacterized protein" [	0.564	0.051	0.423	3.9e-05
ZFIN|ZDB-GENE-050208-608	4616	lrp1ba "low density lipoprotei	0.529	0.009	0.478	3.9e-05
UNIPROTKB|F1MM86	932	C6 "Complement component C6" [	0.505	0.046	0.444	6.2e-05
UNIPROTKB|Q29RU4	932	C6 "Complement component C6" [	0.505	0.046	0.444	6.2e-05
FB|FBgn0051092	1064	LpR2 "Lipophorin receptor 2" [	0.458	0.036	0.512	7.3e-05

ZFIN|ZDB-GENE-061103-613 st14b "suppression of tumorigenicity 14 (colon carcinoma) b" [Danio rerio (taxid:7955)]

 Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65
             C+  E+ C +GRCIS  + CN Y+DCGD SDE R C++S
Sbjct:   536 CKTWEFRCRSGRCISAQKQCNGYNDCGDGSDESR-CAKS 573

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0052206 CG32206 [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query:     9 LLGSCFLVVSXXXXXXXXCRISEYACE-NGR----CISLDRFCNEYDDCGDKSDEPRYCS 63
             LL    LVV         CR+SE++C+ +G     C+ LD++C+   DC D SDEP++CS
Sbjct:    31 LLLPALLVVLLATTLGLACRVSEFSCKGSGNSGTICVPLDKYCDGRSDCADGSDEPKHCS 90

GO:0046331 "lateral inhibition" evidence=IMP

GO:0017147 "Wnt-protein binding" evidence=IBA

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IBA

GO:0042813 "Wnt-activated receptor activity" evidence=IBA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IBA

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTA 68
             C   ++AC NG+CI  +  CN+Y DC D+SDEP +C+  + A
Sbjct:  3211 CPQGQFACTNGQCIDYNLVCNKYPDCADESDEPAHCNVDECA 3252

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

ZFIN|ZDB-GENE-040426-1358 c6 "complement component 6" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
             C+  ++ C+ GRCI  D  CN+ +DCGD SDE R C R+K+
Sbjct:   141 CK-DKFTCDTGRCIHADLQCNDQNDCGDNSDE-RDCERNKS 179

GO:0005579 "membrane attack complex" evidence=IEA

GO:0006955 "immune response" evidence=IEA

ZFIN|ZDB-GENE-100513-4 si:ch211-22d5.4 "si:ch211-22d5.4" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
             C+  ++ C+ GRCI  D  CN+ +DCGD SDE R C R K+
Sbjct:   141 CK-DKFTCDTGRCIHADLQCNDQNDCGDNSDE-RDCGRIKS 179

GO:0005579 "membrane attack complex" evidence=IEA

GO:0006955 "immune response" evidence=IEA

UNIPROTKB|F1N9Z9 C6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query:    27 CRISEYACEN--GRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAV 76
             C+ +++ CEN  GRCI+    CN  +DCGD SDE RYC R K    +   ++
Sbjct:   140 CK-NKFQCENDAGRCIAKKLECNGDNDCGDNSDE-RYCGRKKVVCSRKFESI 189

GO:0005579 "membrane attack complex" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001970 "positive regulation of activation of membrane attack complex" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

ZFIN|ZDB-GENE-050208-608 lrp1ba "low density lipoprotein receptor-related protein 1Ba" [Danio rerio (taxid:7955)]

 Score = 117 (46.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKH 72
             CR    +C N RC+S  RFCN  +DCGD SDE  YC+ S     +H
Sbjct:  2518 CRHGFKSCYNQRCVSNQRFCNGVNDCGDNSDEV-YCNNSSCLSSEH 2562

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MM86 C6 "Complement component C6" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQK 71
             C+ +++ C++GRCI+    CN  +DCGD SDE R C R KT   +
Sbjct:   140 CK-NKFRCDSGRCIASKLECNGENDCGDNSDE-RNCGRKKTVCSR 182

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0001970 "positive regulation of activation of membrane attack complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005579 "membrane attack complex" evidence=IEA

UNIPROTKB|Q29RU4 C6 "Complement component C6" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query:    27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQK 71
             C+ +++ C++GRCI+    CN  +DCGD SDE R C R KT   +
Sbjct:   140 CK-NKFRCDSGRCIASKLECNGENDCGDNSDE-RNCGRKKTVCSR 182

GO:0005576 "extracellular region" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0019835 "cytolysis" evidence=IEA

GO:0006958 "complement activation, classical pathway" evidence=IEA

GO:0005579 "membrane attack complex" evidence=IEA

FB|FBgn0051092 LpR2 "Lipophorin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query:    27 CRISEYACENGRCISLDRF-CNEYDDCGDKSDEPRYCSRSK 66
             CR  E+ C NGRCI  +RF C++ DDCGD SDE     ++K
Sbjct:   317 CRSDEFTCGNGRCIQ-NRFKCDDDDDCGDGSDEKNCGEKAK 356

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	3e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-07

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 43.0 bits (102), Expect = 1e-07
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          C  +E+ C NGRCI     C+  DDCGD SDE
Sbjct: 1  CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
           C   E+ C +G CI +   C+   DC D SDE
Sbjct: 2  TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 41.5 bits (98), Expect = 6e-07
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
           C   E+ C+NGRCI     C+  DDCGD SDE
Sbjct: 1  TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.5
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.46
smart00192	33	LDLa Low-density lipoprotein receptor domain class	99.28
KOG1215|consensus	877		96.61
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	96.5
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	96.35
KOG1215|consensus	877		94.18
KOG2397|consensus	480		87.11

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.50  E-value=2.2e-14  Score=76.59  Aligned_cols=37  Identities=41%  Similarity=0.924  Sum_probs=34.3

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC   62 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C   62 (85)
                      +.|+..+|+|.++.||+..++|||+.||.|||||.+ |
T Consensus         1 ~~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~-C   37 (37)
T PF00057_consen    1 PTCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQN-C   37 (37)
T ss_dssp             SSSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSS-H
T ss_pred             CcCcCCeeEcCCCCEEChHHcCCCCCCCCCCccccc-C
Confidence            368999999999999999999999999999999975 5

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.46  E-value=4.1e-14  Score=74.58  Aligned_cols=35  Identities=51%  Similarity=1.137  Sum_probs=32.6

Q ss_pred             CCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508          27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC   62 (85)
Q Consensus        27 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C   62 (85)
                      |++.+|+|.+++||+..++|||+.||.|||||.+ |
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~-C   35 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN-C   35 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCccccc-C
Confidence            6678999999999999999999999999999975 5

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=99.28  E-value=3e-12  Score=66.50  Aligned_cols=32  Identities=53%  Similarity=1.168  Sum_probs=30.3

Q ss_pred             CCCCeEeecCCceeccCcccCCcCCCCCCCCC
Q psy5508          27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE   58 (85)
Q Consensus        27 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE   58 (85)
                      |+..+|+|.++.||+..++|||+.||.|||||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            66679999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215|consensus

Probab=96.61  E-value=0.0011  Score=54.65  Aligned_cols=38  Identities=34%  Similarity=0.879  Sum_probs=33.6

Q ss_pred             CCCCCCeEeec--CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ..|...+|+|.  +++|++..|+||+..+|.||+||.. |.
T Consensus       136 ~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~-~~  175 (877)
T KOG1215|consen  136 SHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELN-CA  175 (877)
T ss_pred             ccccCCCCCCcCccccCCCCceeCCCCCccccchhhhc-cc
Confidence            45666789998  7899999999999999999999986 76

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=96.50  E-value=0.0025  Score=44.37  Aligned_cols=35  Identities=37%  Similarity=0.635  Sum_probs=31.0

Q ss_pred             CCCCCCeEeecCC----ceeccCcccCCcCC---CCCCCCCC
Q psy5508          25 HQCRISEYACENG----RCISLDRFCNEYDD---CGDKSDEP   59 (85)
Q Consensus        25 ~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~DgSDE~   59 (85)
                      +.|+.+.|.|.|.    .-|+.+++=||+=|   |-|||||.
T Consensus        70 sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~  111 (176)
T PF12999_consen   70 SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDES  111 (176)
T ss_pred             ccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCC
Confidence            4688889999884    58999999999999   99999994

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=96.35  E-value=0.0025  Score=44.43  Aligned_cols=32  Identities=34%  Similarity=0.776  Sum_probs=27.9

Q ss_pred             CCCeEeecCCc-e-eccCcccCCcCCCCCCCCCC
Q psy5508          28 RISEYACENGR-C-ISLDRFCNEYDDCGDKSDEP   59 (85)
Q Consensus        28 ~~~~f~C~~g~-C-i~~~~~CDg~~DC~DgSDE~   59 (85)
                      ..+.|.|-+|. = |+.+++.|+.=||.|||||.
T Consensus        34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEP   67 (176)
T PF12999_consen   34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEP   67 (176)
T ss_pred             CCCceEecCCCCceecHHHccCcceeCCCCCCcc
Confidence            44679998874 4 89999999999999999996

>KOG1215|consensus

Probab=94.18  E-value=0.04  Score=45.52  Aligned_cols=39  Identities=31%  Similarity=0.765  Sum_probs=34.2

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ..|...++.|.++.|++....|||..||.||+||.. |..
T Consensus       258 ~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~-~~~  296 (877)
T KOG1215|consen  258 ATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDY-CKK  296 (877)
T ss_pred             cccCCcceeecCCCCccceEEecCccCCCCcccccc-ccc
Confidence            456677999999999999999999999999999974 763

>KOG2397|consensus

Probab=87.11  E-value=0.47  Score=37.68  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             CCCCCCeEeecCC----ceeccCcccCCcCCCCCCCCCC
Q psy5508          25 HQCRISEYACENG----RCISLDRFCNEYDDCGDKSDEP   59 (85)
Q Consensus        25 ~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgSDE~   59 (85)
                      ..|+.+.|+|.|.    .-|+.+.+=||+=||-|||||.
T Consensus        76 sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~  114 (480)
T KOG2397|consen   76 SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY  114 (480)
T ss_pred             ccCCCCceeeeecCCCceeeechhccCcccccccCCCCc
Confidence            3588889999873    4889999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-08
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	3e-07
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	3e-08
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	3e-08
3a7q_B	44	Low-density lipoprotein receptor-related protein;	5e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	6e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	4e-07
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-07
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	7e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-04
1cr8_A	42	Protein (LOW density lipoprotein receptor related	4e-05
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	4e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	5e-05
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-04
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	2e-04
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	2e-04
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	3e-04
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	8e-04

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
            C  ++++C +GRCI +   C+  DDCGD+SDE   C+    
Sbjct: 3  RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTC 45

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 42.7 bits (101), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
               ++++ C NGRCI+++  C+  +DCGD SDE
Sbjct: 43 PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 44.6 bits (106), Expect = 3e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          H C  +++ C +GRCI     C+  +DCGD SDE
Sbjct: 3  HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 44.2 bits (105), Expect = 3e-08
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
           QC+  E+AC N RCI     C+  +DC D SDE
Sbjct: 4  PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 43.8 bits (104), Expect = 5e-08
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
           +C   ++ C N RCI     C+E DDC D SDE
Sbjct: 6  KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 44.6 bits (106), Expect = 6e-08
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          C  +E+ C +G+CIS    C+   DC D SDE
Sbjct: 3  CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 42.6 bits (101), Expect = 4e-07
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 23 QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
              C  + + C +  CI     C+   DC D SDE
Sbjct: 38 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 73

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 42.2 bits (100), Expect = 2e-07
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          C   E+ C +G CI     C+   DC DKSDE
Sbjct: 2  CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 27  CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
                + C NG+ IS  + C+  +DCGD+SDE   C  
Sbjct: 204 PMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCCKA 240

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 42.1 bits (98), Expect = 4e-06
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
            +C  +E+ C++G+CIS    C+   +C D SDE +    S T
Sbjct: 21 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT 64

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 25  HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
             C   E+ C +G+CIS    C+   DC D SDE
Sbjct: 104 KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 137

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 27  CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62
              +++ C +G CI+LD+ CN   DC D SDEP   
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 309

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 37.9 bits (87), Expect = 9e-05
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 25  HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
             C   E+ C +G CI     C+   DC DKSDE
Sbjct: 192 SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 225

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 26  QCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
            CR  E+ C +G CI   R C+   DC D SDE 
Sbjct: 232 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV 265

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 18/55 (32%)

Query: 20  QQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHIT 74
                  C  + + C +  CI     C+   DC D SDE     R     Q   +
Sbjct: 138 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 192

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 35.6 bits (81), Expect = 7e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 24 HHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
             C+  +++C     RCI     C+   DC + SDE
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 98

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
           +C  +E+ C++G+CIS    C+   +C D SDE +    S T
Sbjct: 4  DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT 46

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 26  QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
            CR  E+ C +G CI   R C+   DC D SDE
Sbjct: 214 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 246

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 38.6 bits (89), Expect = 6e-05
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 27  CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62
              +++ C +G CI+LD+ CN   DC D SDEP   
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 291

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 25  HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
             C   E+ C +G+CIS    C+   DC D SDE
Sbjct: 86  KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 24  HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHIT 74
              C  + + C +  CI     C+   DC D SDE     R     Q   +
Sbjct: 124 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 174

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 24  HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65
              C   E+ C +G CI     C+   DC DKSDE      +
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT 214

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 35.2 bits (80), Expect = 9e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 23 QHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
              C+  +++C     RCI     C+   DC + SDE
Sbjct: 43 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 80

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 36.5 bits (85), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 25 HQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDE 58
            C   E+ C  +G CI L   C+   DC D SDE
Sbjct: 2  GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 36.5 bits (85), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 23 QHHQCRISEYACENGR-CISLDRFCNEYDDCGDKSDE 58
              C  +++ C +G  CI+    C+   DC D SDE
Sbjct: 3  MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 36.2 bits (84), Expect = 5e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 23 QHHQCRISEYACENG-RCISLDRFCNEYDDCGDKSDE 58
          Q  +C +  + C N  +C+     CN  DDCG+++DE
Sbjct: 3  QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 23 QHHQCRISEYACENG-RCISLDRFCNEYDDCGDKSDE 58
          +   C  S ++C     C+     C+   DC D +DE
Sbjct: 3  EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 18 SLQQLQHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE-PRYCS 63
           +  L+ H C   E  C      CI    FC+   DC D SDE P  CS
Sbjct: 45 RISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 93

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 19 LQQLQHHQCRISEYAC--ENGRCISLDRFCNEYDDCGDKSDE 58
          +++L+   C   E+ C  ++ +CIS    C+ ++DC +  DE
Sbjct: 47 VEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 34.4 bits (79), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 23 QHHQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDE 58
          +   C   ++ C      +G C   D  C+ + DC D  DE
Sbjct: 3  EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 33.2 bits (76), Expect = 8e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 26 QCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDE 58
          +C   ++ C      +G C   D  C+ + DC D  DE
Sbjct: 4  RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.55
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.54
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.54
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.54
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.52
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.52
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.49
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.46
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.45
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.45
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.43
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.41
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.4
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.33
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.3
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.23
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.16
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	99.13
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.1
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	99.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.88
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.86
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.82
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.63
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.51
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	98.47
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.0

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.55  E-value=2.7e-15  Score=79.14  Aligned_cols=37  Identities=41%  Similarity=0.856  Sum_probs=34.3

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      .|+..+|+|.+|+||+..|+|||+.||.|||||.+ |+
T Consensus         1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~-C~   37 (37)
T 1ajj_A            1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-CA   37 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT-CC
T ss_pred             CCCCCceEcCCCCeechhhccCCCCCCCCCccccC-CC
Confidence            47889999999999999999999999999999986 74

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=6.2e-15  Score=80.06  Aligned_cols=39  Identities=33%  Similarity=0.901  Sum_probs=35.9

Q ss_pred             CCCCCCCeEeecC-CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACEN-GRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        24 ~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ...|+.++|+|.+ |+||+..|+|||+.||.|||||.+ |.
T Consensus         4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~-C~   43 (43)
T 2jm4_A            4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN-CG   43 (43)
T ss_dssp             SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS-CC
T ss_pred             CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC-CC
Confidence            4679999999999 899999999999999999999986 73

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.54  E-value=4.3e-15  Score=81.05  Aligned_cols=39  Identities=41%  Similarity=0.870  Sum_probs=34.0

Q ss_pred             CCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        24 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ...|+..+|+|.+|+||+..|+|||+.||.|||||.+ |.
T Consensus         5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~-C~   43 (44)
T 3a7q_B            5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD-CP   43 (44)
T ss_dssp             ---CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC-C-
T ss_pred             CCCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC-CC
Confidence            4579999999999999999999999999999999986 85

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.54  E-value=4.8e-15  Score=81.43  Aligned_cols=38  Identities=42%  Similarity=0.794  Sum_probs=35.4

Q ss_pred             CCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC   62 (85)
Q Consensus        24 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C   62 (85)
                      +..|+..+|+|.+|+||+..|+|||+.||.|||||.+ |
T Consensus         3 ~~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~-c   40 (45)
T 1d2l_A            3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP-A   40 (45)
T ss_dssp             CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTST-T
T ss_pred             CCcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCC-C
Confidence            4579999999999999999999999999999999986 5

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.52  E-value=1.1e-14  Score=78.71  Aligned_cols=38  Identities=39%  Similarity=0.835  Sum_probs=34.9

Q ss_pred             CCCCCCeEeecC-CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACEN-GRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ..|...+|+|.+ |+||+..|+|||+.||.|||||.+ |.
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~-C~   40 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT-CC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC-CC
Confidence            468999999985 899999999999999999999986 85

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=2.2e-15  Score=85.23  Aligned_cols=40  Identities=40%  Similarity=0.929  Sum_probs=36.6

Q ss_pred             CCCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          23 QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        23 ~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      .+..|++.+|+|.||+||+..|+|||..||+|||||.+ |.
T Consensus         3 ~p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~-~~   42 (52)
T 2m0p_A            3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN-CN   42 (52)
T ss_dssp             CCCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS-CC
T ss_pred             CCCCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc-ch
Confidence            35679999999999999999999999999999999986 64

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.49  E-value=1.4e-14  Score=79.88  Aligned_cols=39  Identities=31%  Similarity=0.785  Sum_probs=34.5

Q ss_pred             CCCCCCCeEeec-----CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        24 ~~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ...|++.+|+|.     +|+||+.+|+|||+.||.|||||.+ |+
T Consensus         4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~-C~   47 (47)
T 1k7b_A            4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CG   47 (47)
T ss_dssp             --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG-GC
T ss_pred             CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC-CC
Confidence            356999999998     7899999999999999999999986 73

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.46  E-value=2.6e-14  Score=76.12  Aligned_cols=36  Identities=36%  Similarity=0.893  Sum_probs=33.3

Q ss_pred             CCCCeEeecC--CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          27 CRISEYACEN--GRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        27 C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      |++.+|+|.+  |+||+.+|+|||+.||.|||||.+ |.
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~-C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN-CG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT-CC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCccccc-CC
Confidence            6788999997  899999999999999999999986 85

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.45  E-value=1.8e-14  Score=79.90  Aligned_cols=40  Identities=33%  Similarity=0.799  Sum_probs=36.5

Q ss_pred             CCCCCCeEeecCC-ceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENG-RCISLDRFCNEYDDCGDKSDEPRYCSRS   65 (85)
Q Consensus        25 ~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgSDE~~~C~~~   65 (85)
                      ..|...+|+|.+| +||+..|+|||+.||.|||||.+ |...
T Consensus         5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~-C~~~   45 (48)
T 2i1p_A            5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG-CPTR   45 (48)
T ss_dssp             CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS-SCSS
T ss_pred             CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCccccc-CCCC
Confidence            5688899999999 89999999999999999999997 8653

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.45  E-value=3.9e-14  Score=79.29  Aligned_cols=40  Identities=25%  Similarity=0.625  Sum_probs=35.8

Q ss_pred             CCCCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        24 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ...|++.+|+|. +|+||+..|+|||+.||.|||||.+ |..
T Consensus         4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~-C~~   44 (50)
T 2knx_A            4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI-AAG   44 (50)
T ss_dssp             TCTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSG-GGT
T ss_pred             CCCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccc-ccC
Confidence            467999999995 8999999999999999999999986 643

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.43  E-value=3e-14  Score=77.67  Aligned_cols=36  Identities=42%  Similarity=0.988  Sum_probs=33.9

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      ..|++.+|+|.+|+||+..|+|||+.||.|||||.+
T Consensus         3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence            468999999999999999999999999999999974

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.41  E-value=3e-13  Score=82.16  Aligned_cols=40  Identities=40%  Similarity=1.010  Sum_probs=36.3

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCC-CCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE-PRYCSRS   65 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE-~~~C~~~   65 (85)
                      ..|++.+|+|.+|+||+..|+|||+.||.||||| .+ |...
T Consensus         3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~-C~~~   43 (82)
T 2fyj_A            3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS-CAYP   43 (82)
T ss_dssp             SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSS-CCCS
T ss_pred             CCCCCCceEeCCCCEEeccccCCCcccCCCccccccc-cccc
Confidence            4699999999999999999999999999999999 65 8643

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.40  E-value=3.4e-14  Score=78.26  Aligned_cols=38  Identities=32%  Similarity=0.828  Sum_probs=34.7

Q ss_pred             CCCCCCeEeec-----CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      ..|+..+|+|.     +++||+..|+|||+.||.|||||.+ |.
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~-C~   45 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CG   45 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH-HH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc-CC
Confidence            46999999998     6899999999999999999999986 74

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.33  E-value=7.5e-13  Score=80.24  Aligned_cols=37  Identities=41%  Similarity=0.936  Sum_probs=34.7

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      .|++.+|+|.+|+||+..|+|||+.||.|||||.+ |.
T Consensus         2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~-C~   38 (80)
T 2fcw_B            2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CP   38 (80)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT-HH
T ss_pred             CCCCCccCCCCCCEEeeecccCCcccCCCcccccc-cc
Confidence            58899999999999999999999999999999986 75

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=78.27  Aligned_cols=37  Identities=27%  Similarity=0.671  Sum_probs=34.0

Q ss_pred             CCCCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        24 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      ...|++.+|+|. +|+||+..|+|||+.||.|||||..
T Consensus         6 ~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~   43 (80)
T 2kny_A            6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI   43 (80)
T ss_dssp             SCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred             CCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence            467999999998 6899999999999999999999973

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.23  E-value=7.8e-12  Score=75.87  Aligned_cols=37  Identities=46%  Similarity=1.120  Sum_probs=33.7

Q ss_pred             CCCC-CeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          26 QCRI-SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        26 ~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      .|.+ .+|+|.+|+||+..++|||+.||.|||||.+ |.
T Consensus        44 ~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~-C~   81 (82)
T 2fyj_A           44 TCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG-CS   81 (82)
T ss_dssp             SSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSC-CC
T ss_pred             cCCCCCceECCCCCeEcHHHccCCCCcCCCCccccC-CC
Confidence            4644 8999999999999999999999999999986 85

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.16  E-value=1.1e-11  Score=75.04  Aligned_cols=37  Identities=35%  Similarity=0.814  Sum_probs=33.1

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCC--CCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE--PRYCS   63 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE--~~~C~   63 (85)
                      .|++.+|+|.+|+||+..|+|||+.||.|||||  .+ |.
T Consensus        41 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~-C~   79 (80)
T 2fcw_B           41 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR-CR   79 (80)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGG-C-
T ss_pred             cCCceeeECCCCCEEecccccCCCcCCCCCCCcCccc-CC
Confidence            477889999999999999999999999999999  54 64

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.13  E-value=3.3e-11  Score=84.85  Aligned_cols=43  Identities=40%  Similarity=0.760  Sum_probs=37.3

Q ss_pred             cCCCCCCCCeEeecC--CceeccCcccCCcCCCCCCCCCC--CCCCCC
Q psy5508          22 LQHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDEP--RYCSRS   65 (85)
Q Consensus        22 ~~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgSDE~--~~C~~~   65 (85)
                      .....|++.+|+|.+  |+||+..|+|||..||.|||||.  + |...
T Consensus        49 ~~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~-C~~~   95 (217)
T 2gtl_M           49 LEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET-CSLN   95 (217)
T ss_dssp             TSCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHH-HCCG
T ss_pred             CCCCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCc-CCCC
Confidence            345689999999965  99999999999999999999997  4 7654

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.10  E-value=1.9e-11  Score=85.94  Aligned_cols=42  Identities=29%  Similarity=0.648  Sum_probs=37.3

Q ss_pred             CCCCCCeEee--cCCceeccCcccCCcCCCCCCCCCCCCCCCCCc
Q psy5508          25 HQCRISEYAC--ENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT   67 (85)
Q Consensus        25 ~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~~~   67 (85)
                      ..|++.+|+|  .||+|||..|+|||..||.|||||.+ |+...+
T Consensus        53 ~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~-C~~~~C   96 (215)
T 2gtl_O           53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD-CTLPTK   96 (215)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC-CCCSSC
T ss_pred             CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccC-CCCCCc
Confidence            3588999999  79999999999999999999999987 976544

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.08  E-value=1.1e-10  Score=82.28  Aligned_cols=43  Identities=28%  Similarity=0.653  Sum_probs=37.3

Q ss_pred             cCCCCCCCCeEeec--CCceeccCcccCCcCCCCCCCCCC--CCCCCC
Q psy5508          22 LQHHQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEP--RYCSRS   65 (85)
Q Consensus        22 ~~~~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~--~~C~~~   65 (85)
                      .....|+..+|+|.  +|+||+..|+|||..||.|||||.  + |...
T Consensus        48 ~~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~-C~~~   94 (220)
T 2gtl_N           48 IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV-CDTS   94 (220)
T ss_dssp             HHCCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGG-GCGG
T ss_pred             CCCCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCccc-CCCC
Confidence            34568999999995  689999999999999999999996  5 8755

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.88  E-value=1.9e-10  Score=92.19  Aligned_cols=39  Identities=33%  Similarity=0.837  Sum_probs=0.0

Q ss_pred             cCCCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508          22 LQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        22 ~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      .....|+.++|+|.+|+||+..|+|||..||.|||||.+
T Consensus        19 ~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~   57 (791)
T 3m0c_C           19 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ   57 (791)
T ss_dssp             ---------------------------------------
T ss_pred             cccCCcCcCccCCCCCCEEehhhcCCCCccCCCCCcccc
Confidence            445689999999999999999999999999999999974

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.86  E-value=2e-09  Score=83.44  Aligned_cols=34  Identities=44%  Similarity=1.084  Sum_probs=32.0

Q ss_pred             CeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          30 SEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        30 ~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      .+|+|. ||+||+..|+|||.+||+|+|||.+ |..
T Consensus        69 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~-c~~  103 (537)
T 3ojy_B           69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN-CRR  103 (537)
T ss_dssp             SSEECTTTCCEECGGGTTSSSCCSSSSCTTSS-CSS
T ss_pred             CccCcCCCCcEeeccccCCCCCCCCCcccccc-CCC
Confidence            689999 9999999999999999999999987 875

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.82  E-value=2.8e-09  Score=83.03  Aligned_cols=38  Identities=39%  Similarity=0.911  Sum_probs=33.9

Q ss_pred             CCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSRS   65 (85)
Q Consensus        26 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~   65 (85)
                      .|+ .+|+|. +|+||+..|+|||..||+|+|||.+ |...
T Consensus        65 ~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~-C~~~  103 (554)
T 3ojy_A           65 QCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD-CEDV  103 (554)
T ss_dssp             CCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSS-CCSC
T ss_pred             CCC-CcCccCCCCEEcccccccCCcccCCCcccccc-CCCC
Confidence            454 689999 9999999999999999999999987 8753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.63  E-value=2e-08  Score=78.92  Aligned_cols=39  Identities=38%  Similarity=0.848  Sum_probs=31.2

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS   65 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~   65 (85)
                      .|+..+|+|.+|+||+..|+|||..||.|||||.+ |...
T Consensus        87 ~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~-C~~~  125 (699)
T 1n7d_A           87 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVL  125 (699)
T ss_dssp             CCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSS-CCCC
T ss_pred             ccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCC-cCcc
Confidence            57788999999999999999999999999999986 8653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.63  E-value=1.9e-08  Score=79.05  Aligned_cols=39  Identities=38%  Similarity=0.793  Sum_probs=35.2

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ..|+..+|+|.+|+||+.+|+|||+.||.|||||.+ |..
T Consensus       174 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~-C~~  212 (699)
T 1n7d_A          174 SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-CAV  212 (699)
T ss_dssp             CCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCS-CCC
T ss_pred             CCCCCcceecCCCceEechhccCCCCCCCCCccccc-CCC
Confidence            468888999999999999999999999999999986 864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.61  E-value=1.7e-08  Score=78.06  Aligned_cols=40  Identities=35%  Similarity=0.737  Sum_probs=30.3

Q ss_pred             CCCCCC-CeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          24 HHQCRI-SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        24 ~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ...|+. .+|+|.+|+||+..++|||+.||.|+|||.+ |..
T Consensus       200 ~~~c~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~-C~~  240 (565)
T 2xrc_A          200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELC-CKA  240 (565)
T ss_dssp             ---------CBCTTSCBCCTTSTTSSSCCSSSSSSSSS-BSS
T ss_pred             ccCCCCcCeeECCCCCccCHHHcCCCcccCCCCccccc-ccc
Confidence            344554 4599999999999999999999999999986 864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.51  E-value=1.2e-08  Score=81.73  Aligned_cols=39  Identities=38%  Similarity=0.848  Sum_probs=0.0

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS   65 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~   65 (85)
                      .|+..+|+|.+|+||+..|+|||+.||.|||||.+ |...
T Consensus       105 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~-C~~~  143 (791)
T 3m0c_C          105 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVL  143 (791)
T ss_dssp             ----------------------------------------
T ss_pred             cccCCeEECCCCCEECHHHcCCCcccCCCCccccc-cccc
Confidence            57778999999999999999999999999999986 8643

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=98.47  E-value=1.2e-07  Score=76.91  Aligned_cols=34  Identities=47%  Similarity=1.077  Sum_probs=31.9

Q ss_pred             CeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          30 SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        30 ~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ..|+|.+|+||+..|+|||.+||+|+|||.+ |..
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~-C~~  154 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERD-CGR  154 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTT-CSS
T ss_pred             cccccCCCceEccceecCCcccCCCcccccc-CCC
Confidence            5699999999999999999999999999987 975

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.00  E-value=4.1e-06  Score=64.73  Aligned_cols=38  Identities=32%  Similarity=0.677  Sum_probs=34.4

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      .|++.+|+|.++.|++..++|||..||.||+||.+ |..
T Consensus       240 ~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~-C~~  277 (565)
T 2xrc_A          240 ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVG-CAG  277 (565)
T ss_dssp             SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSS-CC-
T ss_pred             ccCCCceecCCCcccCccccCCCcccCCCCccccC-cCC
Confidence            37788999999999999999999999999999986 874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-07
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-07
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	5e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	3e-06
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	3e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	4e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-05
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	7e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	2e-04

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 2e-08
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
           H C  +++ C +GRCI     C+  +DCGD SDE 
Sbjct: 2  SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 3e-08
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
           QC+  E+AC N RCI     C+  +DC D SDE 
Sbjct: 4  PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          CR  E+ C +G CI   R C+   DC D SDE
Sbjct: 3  CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 2e-07
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          C  +E+ C +G+CIS    C+   DC D SDE
Sbjct: 3  CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 2e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
          C  + + C +  CI     C+   DC D SDE 
Sbjct: 3  CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 35

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 2e-07
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          C   E+ C +G CI     C+   DC DKSDE
Sbjct: 2  CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
          +C  +E+ C++G+CIS    C+   +C D SDE
Sbjct: 7  RCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 5e-07
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 30 SEYACENGRCISLDRFCNEYDDCGDKSDEP 59
          +++ C +G CI+LD+ CN   DC D SDEP
Sbjct: 10 NKFKCHSGECITLDKVCNMARDCRDWSDEP 39

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.9 bits (88), Expect = 3e-06
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 25 HQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE-PRYCS 63
          H C   E  C      CI    FC+   DC D SDE P  CS
Sbjct: 1  HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 27 CRISEYACE-NGRCISLDRFCNEYDDCGDKSDE 58
          C   E+ C  +G CI L   C+   DC D SDE
Sbjct: 4  CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 35.6 bits (82), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 27 CRISEYAC--ENGRCISLDRFCNEYDDCGDKSDE 58
          C   E+ C  ++ +CIS    C+ ++DC +  DE
Sbjct: 3  CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 35.2 bits (81), Expect = 4e-05
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 26 QCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
           C    + C      CIS    C+ + DC +  DE
Sbjct: 1  HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 7e-05
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 27 CRISEYACENG--RCISLDRFCNEYDDCGDKSDE 58
          CRI E +C     +CI +   C+  +DC    DE
Sbjct: 1  CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 7e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 26 QCRISEYACE--NGRCISLDRFCNEYDDCGDKSDE 58
           C+  +++C     RCI     C+   DC + SDE
Sbjct: 4  TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 33.7 bits (77), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 27 CRISEYACEN-----GRCISLDRFCNEYDDCGDKSDE 58
          C   ++ C       G C   D  C+ + DC D  DE
Sbjct: 2  CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.59
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.58
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.56
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.53
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.52
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.52
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.5
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.47
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.46
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.45
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.44
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.4
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.39
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.36
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.34

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-16  Score=83.21  Aligned_cols=38  Identities=39%  Similarity=0.917  Sum_probs=35.4

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      +.|++++|+|.+|+||+.+++|||..||.|||||.+ |+
T Consensus         1 rtC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~-Cp   38 (39)
T d2fcwb1           1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CP   38 (39)
T ss_dssp             CCCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT-HH
T ss_pred             CcCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcC-CC
Confidence            368999999999999999999999999999999986 74

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.7e-16  Score=81.21  Aligned_cols=37  Identities=41%  Similarity=0.856  Sum_probs=34.8

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      +|++++|+|.+|+||+..++|||+.||.|||||.+ |+
T Consensus         1 PC~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~-Cs   37 (37)
T d1ajja_           1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-CA   37 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT-CC
T ss_pred             CCCCCceEcCCCCEECchhcCCCCCcCCCCchhhc-cC
Confidence            58899999999999999999999999999999986 74

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.4e-16  Score=81.06  Aligned_cols=38  Identities=42%  Similarity=0.888  Sum_probs=35.5

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      +.|++++|+|.+|+||+..++|||+.||.|||||.+ |.
T Consensus         1 ssC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~-C~   38 (39)
T d1f8za_           1 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVG-CV   38 (39)
T ss_dssp             CCCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSS-SC
T ss_pred             CCCCCCceEeCCCCeEChhhcCCCCCcCCCCchhcc-Cc
Confidence            369999999999999999999999999999999986 84

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.8e-15  Score=79.23  Aligned_cols=38  Identities=32%  Similarity=0.742  Sum_probs=34.0

Q ss_pred             CCCCCCCeEeec--CCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEPRYC   62 (85)
Q Consensus        24 ~~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~~~C   62 (85)
                      ...|++++|+|.  +++||+.+|+|||+.||.|||||.+ |
T Consensus         2 s~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~-C   41 (41)
T d1f5ya2           2 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG-C   41 (41)
T ss_dssp             TTTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTT-C
T ss_pred             ccccCCCceECCCCCCCCccchhcCCCcCcCcCcccccC-C
Confidence            357999999995  4689999999999999999999986 6

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.1e-15  Score=79.09  Aligned_cols=39  Identities=38%  Similarity=0.849  Sum_probs=35.3

Q ss_pred             CCCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSR   64 (85)
Q Consensus        25 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~   64 (85)
                      ..|++++|+|. +++||+.+++|||+.||.|||||.+ |..
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~-C~~   41 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CEG   41 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT-CCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhcc-CCC
Confidence            57999999995 5799999999999999999999987 863

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-15  Score=80.60  Aligned_cols=39  Identities=33%  Similarity=0.822  Sum_probs=36.1

Q ss_pred             CCCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508          23 QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC   62 (85)
Q Consensus        23 ~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C   62 (85)
                      ....|++++|+|.+|+||+.+++|||+.||.|||||.+ |
T Consensus         4 ~~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~-c   42 (44)
T d1f5ya1           4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ-E   42 (44)
T ss_dssp             SCCCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTT-S
T ss_pred             CCCccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCC-C
Confidence            35679999999999999999999999999999999986 5

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.5e-15  Score=79.71  Aligned_cols=37  Identities=43%  Similarity=0.811  Sum_probs=34.9

Q ss_pred             CCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508          24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        24 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      +..|+.++|+|.+|+||+.+++|||+.||.|||||..
T Consensus         3 p~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   39 (45)
T d1d2la_           3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP   39 (45)
T ss_dssp             CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTST
T ss_pred             CCcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCc
Confidence            5679999999999999999999999999999999975

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.47  E-value=4.3e-15  Score=78.99  Aligned_cols=38  Identities=32%  Similarity=0.699  Sum_probs=34.3

Q ss_pred             CCCCCCeEeec--CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          25 HQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        25 ~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      +.|+.++|+|.  +|+||+..|+|||+.||.|||||.+ |.
T Consensus         1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~-C~   40 (41)
T d2gtlo2           1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD-CT   40 (41)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC-CC
T ss_pred             CCCCcCeeECCCCCCcEeechhccCCCCcCCCCchhcc-Cc
Confidence            36899999996  5789999999999999999999987 85

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-14  Score=76.49  Aligned_cols=35  Identities=31%  Similarity=0.655  Sum_probs=33.0

Q ss_pred             CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508          26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      +|++++|+|.+|.||+..++|||..||.|||||..
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            48889999999999999999999999999999974

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.1e-15  Score=78.72  Aligned_cols=36  Identities=42%  Similarity=0.988  Sum_probs=34.2

Q ss_pred             CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508          25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      ..|++++|+|.+|+||+..++|||+.||.|||||.+
T Consensus         3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   38 (44)
T d1j8ea_           3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCC
Confidence            479999999999999999999999999999999985

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-14  Score=76.39  Aligned_cols=36  Identities=36%  Similarity=0.890  Sum_probs=32.9

Q ss_pred             CCCCeEeecCC--ceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          27 CRISEYACENG--RCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        27 C~~~~f~C~~g--~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      |++++|+|.+|  +||+..|+|||+.||.|||||.+ |.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~-C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN-CG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS-CC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhcc-CC
Confidence            77899999875  59999999999999999999987 85

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.40  E-value=5.9e-14  Score=74.81  Aligned_cols=37  Identities=32%  Similarity=0.838  Sum_probs=32.7

Q ss_pred             CCCCCeEeecC-----CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508          26 QCRISEYACEN-----GRCISLDRFCNEYDDCGDKSDEPRYCS   63 (85)
Q Consensus        26 ~C~~~~f~C~~-----g~Ci~~~~~CDg~~DC~DgSDE~~~C~   63 (85)
                      .|++.+|+|.+     ++|||.+|+|||+.||.|||||.+ |.
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~-CG   42 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CG   42 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG-GC
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc-cC
Confidence            48889999964     469999999999999999999986 73

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=74.19  Aligned_cols=34  Identities=47%  Similarity=1.059  Sum_probs=31.7

Q ss_pred             CCC-CCeEeecCCceeccCcccCCcCCCCCCCCCC
Q psy5508          26 QCR-ISEYACENGRCISLDRFCNEYDDCGDKSDEP   59 (85)
Q Consensus        26 ~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~   59 (85)
                      .|. +.+|+|.+|+||+..++|||+.||.|+|||.
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~   39 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP   39 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSC
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccC
Confidence            465 6899999999999999999999999999996

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.36  E-value=2.6e-13  Score=72.30  Aligned_cols=34  Identities=38%  Similarity=0.723  Sum_probs=31.4

Q ss_pred             CCCCCeEeecC--CceeccCcccCCcCCCCCCCCCC
Q psy5508          26 QCRISEYACEN--GRCISLDRFCNEYDDCGDKSDEP   59 (85)
Q Consensus        26 ~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgSDE~   59 (85)
                      .|++++|+|.+  ++||+..|+|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            58999999975  68999999999999999999995

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.34  E-value=3.9e-13  Score=71.27  Aligned_cols=35  Identities=29%  Similarity=0.653  Sum_probs=31.6

Q ss_pred             CCCCCeEeec--CCceeccCcccCCcCCCCCCCCCCC
Q psy5508          26 QCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEPR   60 (85)
Q Consensus        26 ~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~~   60 (85)
                      .|++++|+|.  +|.||+.+++|||+.||.|||||..
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            3889999996  4789999999999999999999964