Psyllid ID: psy5598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MSISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSDL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccccEEEcEEEEEEccEEEEEEcccccccEEEEEEEccccEEEEEEEEEEccEEEEEEccccccccccccEEEEcccEEEEEccccHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEEccccccHcEEEEEEcccccEEccEEEEEcccEEEEEEEEccccccccccEEEEEcccEEccccHHHHccEEccccccccccccccc
Coil and Loop (DISEMBL)
MSISSKQALRENVLAVTRdyisqprityktvsgvngplvildevkfpkYAEIVQLRLndgsyragqVLEVSGSKAVVQVFEgtsgidakntvceftgdilrtpvsedmlgrvfngsgkpidkdccsdl
Flexible Loop (DISEMBL)
msisskqalRENVLAVtrdyisqprityktvsgvngPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEgtsgidakntvCEFTGDIlrtpvsedmlgrvfngsgkpidkdccsdl
Low Complexity Region (SEG)
MSISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSDL
Disordered region (IsUnstruct)
***********NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVF***************
Disordered Region (DISOPRED)
*************LAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID***CS**
Disordered Region (DISEMBL)
********LRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSDL
Disordered Region (DISPRO)
*SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
P31409	490	V-type proton ATPase subu	yes	N/A	0.937	0.244	0.875	3e-57
P31401	494	V-type proton ATPase subu	N/A	N/A	0.945	0.244	0.851	7e-57
P31410	494	V-type proton ATPase subu	N/A	N/A	0.945	0.244	0.826	2e-55
P31408	511	V-type proton ATPase subu	yes	N/A	0.882	0.221	0.849	1e-51
Q5R5V5	511	V-type proton ATPase subu	yes	N/A	0.882	0.221	0.849	1e-51
P62815	511	V-type proton ATPase subu	yes	N/A	0.882	0.221	0.849	1e-51
P62814	511	V-type proton ATPase subu	yes	N/A	0.882	0.221	0.849	1e-51
P21281	511	V-type proton ATPase subu	yes	N/A	0.882	0.221	0.849	1e-51
P31407	513	V-type proton ATPase subu	no	N/A	0.929	0.231	0.756	9e-48
P15313	513	V-type proton ATPase subu	no	N/A	0.898	0.224	0.756	2e-47

>sp|P31409|VATB_DROME V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=2 SV=1

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 117/120 (97%)

Query: 3   ISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY 62
           ++++QA RE+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRL DG+ 
Sbjct: 1   MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTV 60

Query: 63  RAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 61  RSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 120

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Drosophila melanogaster (taxid: 7227)

>sp|P31401|VATB_MANSE V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1

 Score =  218 bits (556), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 118/121 (97%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           ++S+ QA +E+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK++EIVQL+L DG+
Sbjct: 4   TLSAAQANKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGT 63

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           +R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 64  HRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID 123

Query: 122 K 122
           K
Sbjct: 124 K 124

Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The B subunit is non-catalytic but combines with other subunits to form the catalytic complex. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P31410|VATB_HELVI V-type proton ATPase subunit B OS=Heliothis virescens GN=VHA55 PE=2 SV=1

 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 116/121 (95%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           ++++ QA +E+VLAV+RD+ISQPR+ YKTVSGVNGPLVILD+VKFPK++EIVQLRL DG+
Sbjct: 4   TLTASQAAKEHVLAVSRDFISQPRLIYKTVSGVNGPLVILDDVKFPKFSEIVQLRLADGT 63

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSG+KAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 64  LRSGQVLEVSGTKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID 123

Query: 122 K 122
           K
Sbjct: 124 K 124

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Heliothis virescens (taxid: 7102)

>sp|P31408|VATB2_BOVIN V-type proton ATPase subunit B, brain isoform OS=Bos taurus GN=ATP6V1B2 PE=1 SV=3

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query: 10  RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
           RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct: 29  REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query: 70  VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct: 89  VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|Q5R5V5|VATB2_PONAB V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query: 10  RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
           RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct: 29  REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query: 70  VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct: 89  VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Pongo abelii (taxid: 9601)

>sp|P62815|VATB2_RAT V-type proton ATPase subunit B, brain isoform OS=Rattus norvegicus GN=Atp6v1b2 PE=1 SV=1

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query: 10  RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
           RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct: 29  REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query: 70  VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct: 89  VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|P62814|VATB2_MOUSE V-type proton ATPase subunit B, brain isoform OS=Mus musculus GN=Atp6v1b2 PE=1 SV=1

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query: 10  RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
           RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct: 29  REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query: 70  VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct: 89  VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|P21281|VATB2_HUMAN V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query: 10  RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
           RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct: 29  REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query: 70  VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct: 89  VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|P31407|VATB1_BOVIN V-type proton ATPase subunit B, kidney isoform OS=Bos taurus GN=ATP6V1B1 PE=1 SV=1

 Score =  188 bits (477), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 104/119 (87%)

Query: 4   SSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYR 63
           +S  A RE+V AVTR+YI+ PRITY+TV  VNGPLV+LD+VKF +YAEIV   L +G+ R
Sbjct: 17  ASLGAAREHVQAVTRNYITHPRITYRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQR 76

Query: 64  AGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           +GQVLEVSG+KA+VQVFEGTSGIDA+ T CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 77  SGQVLEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 135

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|P15313|VATB1_HUMAN V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens GN=ATP6V1B1 PE=1 SV=3

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 101/115 (87%)

Query: 8   ALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQV 67
           A RE++ AVTR+YI+ PR+TY+TV  VNGPLV+LD VKF +YAEIV   L DG+ R+GQV
Sbjct: 21  AAREHMQAVTRNYITHPRVTYRTVCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQV 80

Query: 68  LEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           LEV+G+KA+VQVFEGTSGIDA+ T CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 81  LEVAGTKAIVQVFEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 135

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
157111261	496	ATP synthase subunit beta vacuolar [Aede	0.945	0.243	0.892	3e-57
242011359	496	vacuolar ATP synthase subunit B, putativ	0.953	0.245	0.893	9e-57
170034654	492	V-type ATP synthase beta chain [Culex qu	0.953	0.247	0.877	3e-56
91090031	496	PREDICTED: similar to H(+)-transporting	0.945	0.243	0.876	9e-56
312373433	498	hypothetical protein AND_17443 [Anophele	0.945	0.242	0.867	1e-55
347968745	498	AGAP002884-PA [Anopheles gambiae str. PE	0.945	0.242	0.867	1e-55
17136796	490	vacuolar H[+]-ATPase 55kD B subunit, iso	0.937	0.244	0.875	2e-55
307203836	495	Vacuolar ATP synthase subunit B [Harpegn	0.945	0.244	0.876	2e-55
383847947	495	PREDICTED: V-type proton ATPase subunit	0.945	0.244	0.867	3e-55
195329486	490	GM25995 [Drosophila sechellia] gi|195571	0.937	0.244	0.866	3e-55

>gi|157111261|ref|XP_001651458.1| ATP synthase subunit beta vacuolar [Aedes aegypti] gi|4680480|gb|AAD27666.1|AF092934_1 vacuolar ATPase B subunit [Aedes aegypti] gi|108878452|gb|EAT42677.1| AAEL005798-PA [Aedes aegypti]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 118/121 (97%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           +IS+ QA +E+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRLNDG+
Sbjct: 6   TISAHQAAKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLNDGT 65

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 66  VRSGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 125

Query: 122 K 122
           K
Sbjct: 126 K 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011359|ref|XP_002426420.1| vacuolar ATP synthase subunit B, putative [Pediculus humanus corporis] gi|212510519|gb|EEB13682.1| vacuolar ATP synthase subunit B, putative [Pediculus humanus corporis]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 109/122 (89%), Positives = 118/122 (96%)

Query: 1   MSISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDG 60
           MSIS+ QA RE+VLAV+RD+ISQPR+TYKTVSGVNGPLVILD+VKFPKY EIVQLRL DG
Sbjct: 1   MSISAVQANREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDDVKFPKYNEIVQLRLADG 60

Query: 61  SYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI 120
           S+R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPI
Sbjct: 61  SFRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 120

Query: 121 DK 122
           DK
Sbjct: 121 DK 122

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034654|ref|XP_001845188.1| V-type ATP synthase beta chain [Culex quinquefasciatus] gi|2921502|gb|AAC04806.1| B subunit V-ATPase [Culex quinquefasciatus] gi|167876059|gb|EDS39442.1| V-type ATP synthase beta chain [Culex quinquefasciatus]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 117/122 (95%)

Query: 1   MSISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDG 60
           MS++  QA +E+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRL DG
Sbjct: 1   MSLNRAQATKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADG 60

Query: 61  SYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI 120
           + R+GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI
Sbjct: 61  TIRSGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPI 120

Query: 121 DK 122
           DK
Sbjct: 121 DK 122

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090031|ref|XP_967844.1| PREDICTED: similar to H(+)-transporting ATPase [Tribolium castaneum] gi|270014269|gb|EFA10717.1| hypothetical protein TcasGA2_TC012133 [Tribolium castaneum]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 118/121 (97%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           SISSKQA RE+VLAV+RD++SQPR+TYKTV+GVNGPLVILD+VKFPK+ EIVQL+L+DGS
Sbjct: 6   SISSKQAAREHVLAVSRDFVSQPRLTYKTVTGVNGPLVILDDVKFPKFNEIVQLKLSDGS 65

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAK+TVCEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 66  IRSGQVLEVSGSKAVVQVFEGTSGIDAKHTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 125

Query: 122 K 122
           K
Sbjct: 126 K 126

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373433|gb|EFR21178.1| hypothetical protein AND_17443 [Anopheles darlingi]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 117/121 (96%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           ++S+ QA +E+VLAV+RD+ISQPR+ YKTVSGVNGPLVILDEVKFPK+AEIVQLRL+DG+
Sbjct: 8   TLSAHQAHKEHVLAVSRDFISQPRLVYKTVSGVNGPLVILDEVKFPKFAEIVQLRLSDGT 67

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 68  IRSGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 127

Query: 122 K 122
           K
Sbjct: 128 K 128

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968745|ref|XP_312029.3| AGAP002884-PA [Anopheles gambiae str. PEST] gi|333467862|gb|EAA08175.4| AGAP002884-PA [Anopheles gambiae str. PEST]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 117/121 (96%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           ++S+ QA +E+VLAV+RD+ISQPR+ YKTVSGVNGPLVILDEVKFPK+AEIVQLRL+DG+
Sbjct: 8   TLSAHQAHKEHVLAVSRDFISQPRLIYKTVSGVNGPLVILDEVKFPKFAEIVQLRLSDGT 67

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 68  VRSGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 127

Query: 122 K 122
           K
Sbjct: 128 K 128

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136796|ref|NP_476908.1| vacuolar H[+]-ATPase 55kD B subunit, isoform B [Drosophila melanogaster] gi|24646341|ref|NP_731726.1| vacuolar H[+]-ATPase 55kD B subunit, isoform A [Drosophila melanogaster] gi|281361666|ref|NP_001163597.1| vacuolar H[+]-ATPase 55kD B subunit, isoform C [Drosophila melanogaster] gi|194764831|ref|XP_001964531.1| GF23001 [Drosophila ananassae] gi|194901678|ref|XP_001980379.1| GG17111 [Drosophila erecta] gi|195110565|ref|XP_001999850.1| GI24752 [Drosophila mojavensis] gi|195450853|ref|XP_002072660.1| GK13566 [Drosophila willistoni] gi|195500542|ref|XP_002097416.1| GE24501 [Drosophila yakuba] gi|401325|sp|P31409.1|VATB_DROME RecName: Full=V-type proton ATPase subunit B; Short=V-ATPase subunit B; AltName: Full=V-ATPase 55 kDa subunit; AltName: Full=Vacuolar proton pump subunit B gi|8810|emb|CAA48034.1| vacuolar ATPase B subunit [Drosophila melanogaster] gi|7299652|gb|AAF54836.1| vacuolar H[+]-ATPase 55kD B subunit, isoform A [Drosophila melanogaster] gi|7299653|gb|AAF54837.1| vacuolar H[+]-ATPase 55kD B subunit, isoform B [Drosophila melanogaster] gi|15291557|gb|AAK93047.1| GH27148p [Drosophila melanogaster] gi|25009768|gb|AAN71057.1| AT12604p [Drosophila melanogaster] gi|190614803|gb|EDV30327.1| GF23001 [Drosophila ananassae] gi|190652082|gb|EDV49337.1| GG17111 [Drosophila erecta] gi|193916444|gb|EDW15311.1| GI24752 [Drosophila mojavensis] gi|194168745|gb|EDW83646.1| GK13566 [Drosophila willistoni] gi|194183517|gb|EDW97128.1| GE24501 [Drosophila yakuba] gi|220945750|gb|ACL85418.1| Vha55-PA [synthetic construct] gi|220955454|gb|ACL90270.1| Vha55-PA [synthetic construct] gi|272476951|gb|ACZ94894.1| vacuolar H[+]-ATPase 55kD B subunit, isoform C [Drosophila melanogaster]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 117/120 (97%)

Query: 3   ISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY 62
           ++++QA RE+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRL DG+ 
Sbjct: 1   MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTV 60

Query: 63  RAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 61  RSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 120

Source: Drosophila melanogaster

Species: melanogaster group

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

>gi|307203836|gb|EFN82772.1| Vacuolar ATP synthase subunit B [Harpegnathos saltator]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 117/121 (96%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           +I+S+QA +E+VLAV+RD+I+QPR+TYKTVSGVNGPLVILDEVKFPKYAEIVQL+L DGS
Sbjct: 5   TINSQQASQEHVLAVSRDFIAQPRLTYKTVSGVNGPLVILDEVKFPKYAEIVQLKLADGS 64

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAKNT CEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 65  LRSGQVLEVSGSKAVVQVFEGTSGIDAKNTHCEFTGDILRTPVSEDMLGRVFNGSGKPID 124

Query: 122 K 122
           K
Sbjct: 125 K 125

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847947|ref|XP_003699614.1| PREDICTED: V-type proton ATPase subunit B-like [Megachile rotundata]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 116/121 (95%)

Query: 2   SISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS 61
           SI  +QA++E+VLAV+RD++SQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQL+L DGS
Sbjct: 5   SIGERQAVKEHVLAVSRDFVSQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLKLADGS 64

Query: 62  YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            R+GQVLEVSGSKAVVQVFEGTSGIDAKNT CEFTGDILRTPVSEDMLGRVFNGSGKPID
Sbjct: 65  IRSGQVLEVSGSKAVVQVFEGTSGIDAKNTHCEFTGDILRTPVSEDMLGRVFNGSGKPID 124

Query: 122 K 122
           K
Sbjct: 125 K 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195329486|ref|XP_002031442.1| GM25995 [Drosophila sechellia] gi|195571381|ref|XP_002103682.1| GD20555 [Drosophila simulans] gi|194120385|gb|EDW42428.1| GM25995 [Drosophila sechellia] gi|194199609|gb|EDX13185.1| GD20555 [Drosophila simulans]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/120 (86%), Positives = 117/120 (97%)

Query: 3   ISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY 62
           ++++QA RE+VLA++RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRL DG+ 
Sbjct: 1   MNAQQAQREHVLAISRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTV 60

Query: 63  RAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 61  RSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 120

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0005671	490	Vha55 "Vacuolar H[+]-ATPase 55	0.937	0.244	0.875	7.2e-52
ZFIN|ZDB-GENE-030711-4	509	atp6v1b2 "ATPase, H+ transport	0.921	0.231	0.857	1.2e-49
UNIPROTKB|P31408	511	ATP6V1B2 "V-type proton ATPase	0.882	0.221	0.849	6.9e-47
UNIPROTKB|E2RAC6	511	ATP6V1B2 "Uncharacterized prot	0.882	0.221	0.849	6.9e-47
UNIPROTKB|H0YC04	199	ATP6V1B2 "V-type proton ATPase	0.882	0.567	0.849	6.9e-47
UNIPROTKB|P21281	511	ATP6V1B2 "V-type proton ATPase	0.882	0.221	0.849	6.9e-47
UNIPROTKB|F1RMZ8	511	LOC100739134 "Uncharacterized	0.882	0.221	0.849	6.9e-47
UNIPROTKB|Q5R5V5	511	ATP6V1B2 "V-type proton ATPase	0.882	0.221	0.849	6.9e-47
MGI|MGI:109618	511	Atp6v1b2 "ATPase, H+ transport	0.882	0.221	0.849	6.9e-47
RGD|620284	511	Atp6v1b2 "ATPase, H transporti	0.882	0.221	0.849	6.9e-47

FB|FBgn0005671 Vha55 "Vacuolar H[+]-ATPase 55kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 105/120 (87%), Positives = 117/120 (97%)

Query:     3 ISSKQALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY 62
             ++++QA RE+VLAV+RD+ISQPR+TYKTVSGVNGPLVILDEVKFPK+AEIVQLRL DG+ 
Sbjct:     1 MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTV 60

Query:    63 RAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             R+GQVLEVSGSKAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct:    61 RSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 120

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IGI;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005903 "brush border" evidence=IDA

GO:0007035 "vacuolar acidification" evidence=IDA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030711-4 atp6v1b2 "ATPase, H+ transporting, lysosomal V1 subunit B2" [Danio rerio (taxid:7955)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/119 (85%), Positives = 112/119 (94%)

Query:     5 SKQ-ALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYR 63
             +KQ A+RENVLAVTRDYISQPR+TYKTV+GVNGPLVILD+VKFP+YAEIV L L DG+ R
Sbjct:    22 TKQVAVRENVLAVTRDYISQPRLTYKTVAGVNGPLVILDQVKFPRYAEIVHLTLPDGTKR 81

Query:    64 AGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             +GQVLEV+GSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    82 SGQVLEVTGSKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 140

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|P31408 ATP6V1B2 "V-type proton ATPase subunit B, brain isoform" [Bos taurus (taxid:9913)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005829 "cytosol" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RAC6 ATP6V1B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0YC04 ATP6V1B2 "V-type proton ATPase subunit B, brain isoform" [Homo sapiens (taxid:9606)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    19 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 78

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    79 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 131

GO:0015992 "proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P21281 ATP6V1B2 "V-type proton ATPase subunit B, brain isoform" [Homo sapiens (taxid:9606)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1RMZ8 LOC100739134 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5R5V5 ATP6V1B2 "V-type proton ATPase subunit B, brain isoform" [Pongo abelii (taxid:9601)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005829 "cytosol" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:109618 Atp6v1b2 "ATPase, H+ transporting, lysosomal V1 subunit B2" [Mus musculus (taxid:10090)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

RGD|620284 Atp6v1b2 "ATPase, H transporting, lysosomal V1 subunit B2" [Rattus norvegicus (taxid:10116)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 96/113 (84%), Positives = 104/113 (92%)

Query:    10 RENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLE 69
             RE  LAV+R+Y+SQPR+TYKTVSGVNGPLVILD VKFP+YAEIV L L DG+ R+GQVLE
Sbjct:    29 REQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLE 88

Query:    70 VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             VSGSKAVVQVFEGTSGIDAK T CEFTGDILRTPVSEDMLGRVFNGSGKPID+
Sbjct:    89 VSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDR 141

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0005902 "microvillus" evidence=IEA;ISO

GO:0007035 "vacuolar acidification" evidence=TAS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0030641 "regulation of cellular pH" evidence=TAS

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6YV15	VATB_THEON	No assigned EC number	0.5408	0.7656	0.2107	yes	N/A
B5XJH4	VATB_STRPZ	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
Q8SR34	VATB_ENCCU	No assigned EC number	0.6161	0.7734	0.2075	yes	N/A
P31408	VATB2_BOVIN	No assigned EC number	0.8495	0.8828	0.2211	yes	N/A
P31409	VATB_DROME	No assigned EC number	0.875	0.9375	0.2448	yes	N/A
P62815	VATB2_RAT	No assigned EC number	0.8495	0.8828	0.2211	yes	N/A
P62814	VATB2_MOUSE	No assigned EC number	0.8495	0.8828	0.2211	yes	N/A
Q9SZN1	VATB2_ARATH	No assigned EC number	0.7291	0.75	0.1971	yes	N/A
Q5R5V5	VATB2_PONAB	No assigned EC number	0.8495	0.8828	0.2211	yes	N/A
Q5JIR2	VATB_PYRKO	No assigned EC number	0.5306	0.7656	0.2107	yes	N/A
Q1JIX4	VATB_STRPD	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
P11574	VATB1_ARATH	No assigned EC number	0.75	0.75	0.1975	yes	N/A
Q25691	VATB_PLAFA	No assigned EC number	0.6302	0.9296	0.2408	yes	N/A
P0DA09	VATB_STRPQ	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
P21281	VATB2_HUMAN	No assigned EC number	0.8495	0.8828	0.2211	yes	N/A
Q8TUT0	VATB_METKA	No assigned EC number	0.5319	0.7343	0.0949	yes	N/A
A3CK49	VATB_STRSV	No assigned EC number	0.5744	0.7343	0.2025	yes	N/A
Q19626	VATB_CAEEL	No assigned EC number	0.7592	0.8437	0.2199	yes	N/A
P16140	VATB_YEAST	No assigned EC number	0.6280	0.9453	0.2340	yes	N/A
C5A337	VATB_THEGJ	No assigned EC number	0.5306	0.7656	0.2116	yes	N/A
A2RC98	VATB_STRPG	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
P31411	VATB_SCHPO	No assigned EC number	0.6306	0.8671	0.2206	yes	N/A
Q1JDW9	VATB_STRPB	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
Q8W4E2	VATB3_ARATH	No assigned EC number	0.75	0.75	0.1971	yes	N/A
O57729	VATB_PYRHO	No assigned EC number	0.5212	0.7343	0.2021	yes	N/A
Q1J8S4	VATB_STRPF	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A
Q76NU1	VATB_DICDI	No assigned EC number	0.6347	0.8984	0.2332	yes	N/A
Q1JNS7	VATB_STRPC	No assigned EC number	0.5425	0.7343	0.1995	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
TIGR01040	466	TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B	2e-63
COG1156	463	COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su	1e-42
PRK04196	460	PRK04196, PRK04196, V-type ATP synthase subunit B;	6e-41
TIGR01041	458	TIGR01041, ATP_syn_B_arch, ATP synthase archaeal,	1e-33
PRK02118	436	PRK02118, PRK02118, V-type ATP synthase subunit B;	2e-14
COG1157	441	COG1157, FliI, Flagellar biosynthesis/type III sec	2e-10
PRK04192	586	PRK04192, PRK04192, V-type ATP synthase subunit A;	4e-10
cd01135	276	cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-	5e-09
TIGR03496	411	TIGR03496, FliI_clade1, flagellar protein export A	2e-08
pfam02874	69	pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta	5e-08
TIGR01043	578	TIGR01043, ATP_syn_A_arch, ATP synthase archaeal,	1e-07
TIGR01026	440	TIGR01026, fliI_yscN, ATPase FliI/YscN family	1e-07
TIGR03498	418	TIGR03498, FliI_clade3, flagellar protein export A	2e-07
COG1155	588	COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase su	2e-07
TIGR02546	422	TIGR02546, III_secr_ATP, type III secretion appara	5e-07
PRK14698	1017	PRK14698, PRK14698, V-type ATP synthase subunit A;	1e-06
COG0056	504	COG0056, AtpA, F0F1-type ATP synthase, alpha subun	1e-05
PRK12597	461	PRK12597, PRK12597, F0F1 ATP synthase subunit beta	3e-05
PRK09281	502	PRK09281, PRK09281, F0F1 ATP synthase subunit alph	3e-05
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	2e-04
TIGR01042	591	TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A	2e-04
TIGR00962	501	TIGR00962, atpA, proton translocating ATP synthase	3e-04
CHL00059	485	CHL00059, atpA, ATP synthase CF1 alpha subunit	3e-04
TIGR03497	413	TIGR03497, FliI_clade2, flagellar protein export A	6e-04
COG0055	468	COG0055, AtpD, F0F1-type ATP synthase, beta subuni	0.001
PRK06820	440	PRK06820, PRK06820, type III secretion system ATPa	0.002
PRK06936	439	PRK06936, PRK06936, type III secretion system ATPa	0.002
TIGR01039	461	TIGR01039, atpD, ATP synthase, F1 beta subunit	0.002
PRK09280	463	PRK09280, PRK09280, F0F1 ATP synthase subunit beta	0.003
PRK08472	434	PRK08472, fliI, flagellum-specific ATP synthase; V	0.004
PRK08927	442	PRK08927, fliI, flagellum-specific ATP synthase; V	0.004
PRK07594	433	PRK07594, PRK07594, type III secretion system ATPa	0.004

>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit

 Score =  199 bits (509), Expect = 2e-63
 Identities = 82/96 (85%), Positives = 88/96 (91%)

Query: 27  TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86
            Y+TVSGVNGPLVILD VKFP++AEIV L L DG+ R+GQVLEVSG+KAVVQVFEGTSGI
Sbjct: 1   EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGI 60

Query: 87  DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           DAK T CEFTGDILRTPVSEDMLGRVFNGSGKPIDK
Sbjct: 61  DAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 96

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 466

>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

 Score =  145 bits (367), Expect = 1e-42
 Identities = 57/99 (57%), Positives = 71/99 (71%)

Query: 24  PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGT 83
               Y T+S + GPL+I++ V+   Y E+V++   DG  R GQVLEV G KAVVQVFEGT
Sbjct: 3   MVKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGT 62

Query: 84  SGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           SG+D K T   FTG+ L+ PVSED+LGR+FNGSGKPID 
Sbjct: 63  SGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDG 101

Length = 463

>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional

 Score =  140 bits (356), Expect = 6e-41
 Identities = 55/97 (56%), Positives = 72/97 (74%)

Query: 25  RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTS 84
              Y+TVS + GPL+ ++ V+   Y EIV++ L +G  R GQVLEVS  KAVVQVFEGT+
Sbjct: 1   LKEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTT 60

Query: 85  GIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           G+D K+T   FTG+ L+ PVSEDMLGR+F+G G+PID
Sbjct: 61  GLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPID 97

Length = 460

>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit

 Score =  121 bits (305), Expect = 1e-33
 Identities = 51/94 (54%), Positives = 66/94 (70%)

Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           Y T++ + GPLV ++ V+   Y EIV++   DG  R GQVL+ S   AVVQVFEGT+G+D
Sbjct: 2   YSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGIAVVQVFEGTTGLD 61

Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
              T   FTG+ L+ PVSEDMLGR+ NGSG+PID
Sbjct: 62  PTGTKVRFTGETLKLPVSEDMLGRILNGSGEPID 95

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 458

>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 25  RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTS 84
           +  Y  ++ + G ++ + E +   Y E+  +   DGS    QV+ + G K  +QVF GT 
Sbjct: 2   QKIYTKITDITGNVITV-EAEGVGYGELATVERKDGS-SLAQVIRLDGDKVTLQVFGGTR 59

Query: 85  GIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           GI   + V  F G  ++   SE +LGR FNGSGKPID
Sbjct: 60  GISTGDEV-VFLGRPMQVTYSESLLGRRFNGSGKPID 95

Length = 436

>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 20  YISQPRITYKTVSGVNGPLVILDEVKFPKYA--EIVQLRLNDGSYRA-GQVLEVSGSKAV 76
                +   +    V G L+   E   P+    E+ ++  + GS +   +V+  +  + +
Sbjct: 18  NTDPYKRRGRLTR-VTGLLL---EAVGPQARIGELCKIERSRGSEKVLAEVVGFNEERVL 73

Query: 77  VQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           +  FE   G+ +       TG  L  PV + +LGRV +G G+P+D
Sbjct: 74  LMPFEPVEGV-SPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLD 117

Length = 441

>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 18/100 (18%)

Query: 30  TVSGVNGPLVILDEVKFPKYAEIVQ---LRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86
            +  V+GPLV+ + +   +  E+V+     L       G+++ + G KA +QV+E TSGI
Sbjct: 6   KIVRVSGPLVVAEGMGGARMYEVVRVGEEGL------IGEIIRIEGDKATIQVYEETSGI 59

Query: 87  DAKNTVCEFTGDILRTPVSED----MLGRVFNGSGKPIDK 122
                V EFTG+    P+S +    +LG +F+G  +P+D+
Sbjct: 60  KPGEPV-EFTGE----PLSVELGPGLLGSIFDGIQRPLDE 94

Length = 586

>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/24 (79%), Positives = 21/24 (87%)

Query: 99  ILRTPVSEDMLGRVFNGSGKPIDK 122
            L+ PVSEDMLGR+FNGSGKPID 
Sbjct: 1   TLKVPVSEDMLGRIFNGSGKPIDG 24

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit. Length = 276

>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 30  TVSGVNGPLVILDEVKFPKYA--EIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
            V+ V G LV+  E    +       ++  +DG     +V+   G + ++   E   G+ 
Sbjct: 2   RVTRVVG-LVL--EAVGLRAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLR 58

Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
               V       LR PV + +LGRV +G G+P+D
Sbjct: 59  PGARV-FPLEGPLRLPVGDSLLGRVIDGLGRPLD 91

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 411

>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel domain

 Score = 46.4 bits (111), Expect = 5e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 31 VSGVNGPLVILDEVKFPKYAEIVQLR---LNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
          +  V GP+V ++            L    +  G+   G+VL + G K  V V  GT G+ 
Sbjct: 1  IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60

Query: 88 AKNTVCEFTG 97
           +    + TG
Sbjct: 61 -RGDEVKRTG 69

This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Length = 69

>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V+GPLV+ D +K  +  E+V++   +G    G+++ + G KA +QV+E TSGI     V 
Sbjct: 7   VSGPLVVADGMKGAQMYEVVKVG-EEG--LIGEIIRIEGDKAFIQVYEETSGIKPGEPV- 62

Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             TG  L   +   +LG +++G  +P+D 
Sbjct: 63  VGTGAPLSVELGPGLLGSIYDGVQRPLDV 91

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 578

>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 53  VQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRV 112
           ++ R ++G   A +V+  +G    +  +E   G+   + V   TG+ L   V + +LGRV
Sbjct: 50  IERRGSEGRLVA-EVVGFNGEFVFLMPYEEVEGVRPGSKV-LATGEGLSIKVGDGLLGRV 107

Query: 113 FNGSGKPID 121
            +G GKPID
Sbjct: 108 LDGLGKPID 116

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins [Energy metabolism, ATP-proton motive force interconversion]. Length = 440

>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 30  TVSGVNGPLV-ILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA 88
            V+ V G L+ +    +  +  +   +R  DG     +V+  +G + ++  FE   G+  
Sbjct: 2   RVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGL 61

Query: 89  KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
              V       L        LGRV N  G+PID
Sbjct: 62  GCAV-FAREGPLAVRPHPSWLGRVINALGEPID 93

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418

>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 31  VSGVNGPLVILDEVKFPKYAEIV---QLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           +  ++GP+V+ + ++  K  ++V   ++ L       G+++ + G++A +QV+E T+GI 
Sbjct: 5   IIRISGPVVVAEGMEGAKMYDVVKVGEMGL------IGEIIRIEGNRATIQVYEDTAGIR 58

Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
               V E TG  L   +   +L  +++G  +P+D 
Sbjct: 59  PGEKV-ENTGRPLSVELGPGLLKSIYDGIQRPLDV 92

Length = 588

>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 31  VSGVNGPLVILDEVKFPKYA--EIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA 88
           V+ V+G L+   +   P     E+  +R  D S    +V+  +G +A++       GI +
Sbjct: 9   VTEVSGTLL---KAVLPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGI-S 64

Query: 89  KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
             +    TG  L   V E +LGRV +G G+P+D
Sbjct: 65  PGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLD 97

[Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 422

>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLVI D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVIADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGLKPGEPV- 65

Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
           E TG  L   +   +L  +++G  +P++
Sbjct: 66  EGTGSSLSVELGPGLLTSIYDGIQRPLE 93

Length = 1017

>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 61  SYRAGQVLEVSGS-KAVVQ----------VFEGTSGIDAKNTVCEFTGDILRTPVSEDML 109
           +  AG+++E  G  K +            +    S I   + V   TG IL  PV E++L
Sbjct: 46  NVMAGELVEFPGGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKR-TGRILEVPVGEELL 104

Query: 110 GRVFNGSGKPIDK 122
           GRV +  G PID 
Sbjct: 105 GRVVDALGNPIDG 117

Length = 504

>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 30  TVSGVNGPLVILDEVKF-----PKYAEIVQLRLNDGSYRAGQVLEVSG--SKAVVQ--VF 80
            +  + G +V   +V+F     P   + + +  + G      +LEV     +  V+    
Sbjct: 5   RIIKIRGDVV---DVEFEEGALPPINQALTVHDDGGPT----LLEVKQHLDETTVRAIAL 57

Query: 81  EGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             TSG+ A+      TG  +  PV E +LGR+ +  G+P+D 
Sbjct: 58  GSTSGL-ARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDG 98

Length = 461

>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG IL  PV E +LGRV N  G+PID
Sbjct: 91  TGRILEVPVGEALLGRVVNPLGQPID 116

Length = 502

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 31  VSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKN 90
           VSG+  P   LDE+          LR   GS   G    +        + + T+ I A  
Sbjct: 41  VSGL--PDAALDEL----------LRFEGGSR--GFAFNLEEELVGAVLLDDTADILAGT 86

Query: 91  TVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            V   TG +L  PV + +LGRV +  G+P+D
Sbjct: 87  EV-RRTGRVLEVPVGDGLLGRVIDPLGRPLD 116

Length = 502

>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 20/102 (19%)

Query: 27  TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYR-AGQVLEVSGSKAVVQVFEGTSG 85
            Y  +  V+GP+V+ + +      E+V++    G     G+++ + G KA +QV+E TSG
Sbjct: 1   EYGYIYKVSGPVVVAENMAGAAMYELVRV----GHDELVGEIIRLEGDKATIQVYEETSG 56

Query: 86  IDAKNTVCEFTGD-ILRT--PVSEDM----LGRVFNGSGKPI 120
           +    TV    GD +LRT  P+S ++    LG +F+G  +P+
Sbjct: 57  L----TV----GDPVLRTGKPLSVELGPGILGNIFDGIQRPL 90

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG IL  PV + +LGRV N  G+PID
Sbjct: 90  TGRILEVPVGDGLLGRVVNALGEPID 115

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 501

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG I + PVSE  LGRV N   KPID
Sbjct: 70  TGKIAQIPVSEAYLGRVVNALAKPID 95

Length = 485

>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 30  TVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAK 89
            V+ V G L I  +    K  E+  +    G     +V+       ++       GI   
Sbjct: 2   KVTRVIG-LTIESKGPKAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGI-GP 59

Query: 90  NTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKD 123
            ++   TG  L   V + +LGRV +G G+P+D +
Sbjct: 60  GSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGE 93

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 413

>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy production and conversion]

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 30  TVSGVNGPLVILDEVKFPKYAEIVQ----LRLNDGSYRAGQVLEVSG--SKAVVQ--VFE 81
            V  V GP+V   +V+FP+  E+ +    L + +G+     VLEV+      VV+     
Sbjct: 5   KVVQVIGPVV---DVEFPEEDELPEIYNALEVQNGNQGT-LVLEVAQHLGDNVVRTIAMG 60

Query: 82  GTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            T G+  +      TG  +  PV +  LGR+FN  G+PID
Sbjct: 61  STDGL-VRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPID 99

Length = 468

>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 66  QVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKD 123
           +V+ +    A++  F  + G+     V    G + +  V  D+ GR+ +G G PID  
Sbjct: 64  EVVSIEQEMALLSPFASSDGLRCGQWV-TPLGHMHQVQVGADLAGRILDGLGAPIDGG 120

Length = 440

>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG + +  V E +LGRV +G G+P D
Sbjct: 91  TGTMHQVGVGEHLLGRVLDGLGQPFD 116

Length = 439

>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 27  TYKTVSGVNGPLVILDEVKFPKYA--EIVQLRLNDGSYRAGQVLEVS---GSKAVVQVFE 81
           T   V  V GP+V   +V+F +     I           +   LEV+   G   V  +  
Sbjct: 1   TKGKVVQVIGPVV---DVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAM 57

Query: 82  GTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           G++    +      TG  +  PV ++ LGR+FN  G+PID
Sbjct: 58  GSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPID 97

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 461

>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG  +  PV +  LGR+FN  G+PID
Sbjct: 73  TGAPISVPVGKATLGRIFNVLGEPID 98

Length = 463

>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 47  PKYAEIVQLRLNDGSYRA-GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVS 105
           P   +IV++  +D      G V+ +   +  +  F    G    + V   + + L  PV 
Sbjct: 37  PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKV-FISKEGLNIPVG 95

Query: 106 EDMLGRVFNGSGKPIDK 122
            ++LGRV +  G+PID 
Sbjct: 96  RNLLGRVVDPLGRPIDG 112

Length = 434

>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 24  PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLN----DGSYRAGQVLEVSGSKAVVQV 79
             + Y  V  V G LV   EV  P +A  V  R+      G     +V+   G +A++  
Sbjct: 14  TLVIYGRVVAVRGLLV---EVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMP 70

Query: 80  FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           F    G+  +               S   LGRV N  G+PID
Sbjct: 71  FGPLEGV-RRGCRAVIANAAAAVRPSRAWLGRVVNALGEPID 111

Length = 442

>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 66  QVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           +V+ ++GSKA++  F  T G+     V        + PV E +LGRV +G G+P+D
Sbjct: 56  EVVGINGSKALLSPFTSTIGLHCGQQVMALRRR-HQVPVGEALLGRVIDGFGRPLD 110

Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PRK09099	441	type III secretion system ATPase; Provisional	99.91
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	99.91
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.91
PRK06936	439	type III secretion system ATPase; Provisional	99.91
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	99.91
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	99.91
PRK04196	460	V-type ATP synthase subunit B; Provisional	99.9
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.9
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	99.9
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	99.9
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	99.9
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.9
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	99.9
PRK05922	434	type III secretion system ATPase; Validated	99.9
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	99.9
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	99.9
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	99.9
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	99.89
PRK06820	440	type III secretion system ATPase; Validated	99.89
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	99.89
PRK06315	442	type III secretion system ATPase; Provisional	99.89
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	99.89
PRK02118	436	V-type ATP synthase subunit B; Provisional	99.89
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	99.88
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	99.88
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	99.88
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	99.88
PRK07594	433	type III secretion system ATPase SsaN; Validated	99.87
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.87
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	99.86
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	99.86
CHL00059	485	atpA ATP synthase CF1 alpha subunit	99.86
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	99.86
PRK08149	428	ATP synthase SpaL; Validated	99.86
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	99.86
PRK04192	586	V-type ATP synthase subunit A; Provisional	99.85
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	99.85
CHL00060	494	atpB ATP synthase CF1 beta subunit	99.85
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	99.84
COG1156	463	NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E	99.83
PRK14698	1017	V-type ATP synthase subunit A; Provisional	99.82
PTZ00185	574	ATPase alpha subunit; Provisional	99.81
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	99.8
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	99.78
KOG1351|consensus	489		99.72
COG1155	588	NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E	99.7
KOG1352|consensus	618		99.52
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	99.48
PF02874	69	ATP-synt_ab_N: ATP synthase alpha/beta family, bet	99.32
KOG1353|consensus	340		99.28
KOG1350|consensus	521		99.23
PRK12608	380	transcription termination factor Rho; Provisional	97.04
PF09378	91	HAS-barrel: HAS barrel domain; InterPro: IPR018538	92.82

>PRK09099 type III secretion system ATPase; Provisional

Probab=99.91  E-value=7.5e-24  Score=178.28  Aligned_cols=111  Identities=25%  Similarity=0.322  Sum_probs=97.3

Q ss_pred             hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCce-EEEEEEEEeCCEEEEEEccCCCCcccCC
Q psy5598          12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSY-RAGQVLEVSGSKAVVQVFEGTSGIDAKN   90 (128)
Q Consensus        12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~-~~geVv~~~~~~v~l~~~~~~~Gi~~G~   90 (128)
                      .+.++++.  ..+.+.+|+|++|.|++++++|+. +++||+|.|...++.. ..|||++|+++.+.+|||+++.||+.| 
T Consensus        11 ~~~~~~~~--~~~~~~~G~V~~v~g~~i~~~g~~-~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g-   86 (441)
T PRK09099         11 ALERELAA--LPAVRRTGKVVEVIGTLLRVSGLD-VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRG-   86 (441)
T ss_pred             HHHHHHhc--CCcceEeeEEEEEECCEEEEeccC-CCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCC-
Confidence            34444443  367778999999999999999985 9999999995434443 789999999999999999999999999 


Q ss_pred             cEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          91 TVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        91 ~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++|.++|++++||+|++|||||+|++|+|||+++++
T Consensus        87 ~~V~~tg~~~~v~vg~~lLGrV~d~~G~piD~~~~~  122 (441)
T PRK09099         87 TRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPL  122 (441)
T ss_pred             CEEEeCCCccEEEeccccccCEEcccCCccCCCCCC
Confidence            599999999999999999999999999999998764

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.91  E-value=4.8e-24  Score=177.40  Aligned_cols=102  Identities=24%  Similarity=0.387  Sum_probs=93.4

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc-eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS-YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR  101 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~-~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~  101 (128)
                      .++..+|+|++|.|.++++.|+ .+++||+|.|+.+++. ...|||++|+++.+++|||++..|+++| ++|.+++++++
T Consensus        20 ~~~~~~G~v~~v~G~~lea~g~-~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g-~~V~~~~~~~~   97 (441)
T COG1157          20 DPYKRRGRLTRVTGLLLEAVGP-QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPG-AEVVPTGRPLS   97 (441)
T ss_pred             CcceEEEEEEEEeeeEEEEecC-CCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCC-CEEEecCCccc
Confidence            6777899999999999999997 5999999999976433 2399999999999999999999999999 59999999999


Q ss_pred             EeCCCCCccceecCCcccccCCCCC
Q psy5598         102 TPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       102 Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +++|++|||||+|++|+||||++.+
T Consensus        98 v~~g~~lLGRVld~~G~plDg~~~~  122 (441)
T COG1157          98 VPVGDALLGRVLDGLGRPLDGGGLP  122 (441)
T ss_pred             cccChhhhhhhhccCCCcCcCCCCC
Confidence            9999999999999999999996654

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.91  E-value=9.2e-24  Score=177.42  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT  102 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V  102 (128)
                      .+.+.+|+|++|.|.++++.|+ .+++||+|+|...++..+.|||++|+++.+++|||++++|++.| ++|.+++++++|
T Consensus        13 ~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~~v   90 (434)
T PRK07196         13 HLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGG-ARVFPSEQDGEL   90 (434)
T ss_pred             CccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCC-CEEEECCCccEE
Confidence            5667799999999999999998 59999999996434435899999999999999999999999999 599999999999


Q ss_pred             eCCCCCccceecCCcccccCCCCC
Q psy5598         103 PVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       103 pvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |+|++|||||+|++|+|||+++++
T Consensus        91 ~vg~~llGrv~d~~G~pld~~~~~  114 (434)
T PRK07196         91 LIGDSWLGRVINGLGEPLDGKGQL  114 (434)
T ss_pred             EcCccccCCeeCcCCCCcCCCCCC
Confidence            999999999999999999998764

>PRK06936 type III secretion system ATPase; Provisional

Probab=99.91  E-value=1.8e-23  Score=175.84  Aligned_cols=115  Identities=22%  Similarity=0.261  Sum_probs=99.5

Q ss_pred             HHHHhHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc-eEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS-YRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~-~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      .+...+.++++.+  .+.+.+|+|++|.|+++++.+. .+++||+|.|...++. .+.+||++|+++.+++|||++++||
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~G~V~~v~g~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi   82 (439)
T PRK06936          6 YIPHHLRHAIVGS--RLIQIRGRVTQVTGTILKAVVP-GVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGI   82 (439)
T ss_pred             HHHHHHHHHHhcC--CccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCC
Confidence            3444555555554  5577799999999999999975 6999999999743333 4899999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| ++|++||++++||+|++|||||+|++|+|||+++++
T Consensus        83 ~~g-~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~  121 (439)
T PRK06936         83 SSN-TEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPP  121 (439)
T ss_pred             CCC-CEEEeCCCceEEEeCccccCCEECCCCCccCCCCCC
Confidence            999 599999999999999999999999999999998764

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=99.91  E-value=3.4e-23  Score=174.18  Aligned_cols=112  Identities=16%  Similarity=0.184  Sum_probs=97.8

Q ss_pred             hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCc
Q psy5598          12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNT   91 (128)
Q Consensus        12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~   91 (128)
                      .|.+.-+.....+.+.+|+|++|.|++|++.|+. +++||+|.|...++ .+.|||++|+++.+.+|||++++||+.| +
T Consensus        10 ~~~~~~~~~~~~~~~~~G~v~~v~g~~i~~~g~~-~~ige~~~i~~~~~-~~~~EVv~~~~~~~~l~~~~~~~gi~~g-~   86 (444)
T PRK08972         10 RLKQYKVKVPPFRAVASGKLVRVVGLTLEATGCR-APVGSLCSIETMAG-ELEAEVVGFDGDLLYLMPIEELRGVLPG-A   86 (444)
T ss_pred             HHHHHhhccCCCCcceeeEEEEEEcCEEEEeeCC-CCCCCEEEEecCCC-cEEEEEEEecCCEEEEEECCCcCCCCCC-C
Confidence            3444445555556677999999999999999984 99999999953233 4899999999999999999999999999 5


Q ss_pred             EEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          92 VCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        92 ~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +|.++|++++||+|++|||||+|++|+|||+++++
T Consensus        87 ~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~  121 (444)
T PRK08972         87 RVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPI  121 (444)
T ss_pred             EEEECCCccEEEcChhhcCCeECCCCCCcCCCCCC
Confidence            99999999999999999999999999999998765

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=99.91  E-value=2.5e-23  Score=174.83  Aligned_cols=102  Identities=20%  Similarity=0.345  Sum_probs=93.2

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCC-ceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDG-SYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR  101 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~-~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~  101 (128)
                      .+.+.+|+|++|.|++++++|+. +++||+|.|...++ ..+.|||++|+++.+.++||+++.||+.| ++|.+++++++
T Consensus        14 ~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G-~~V~~tg~~~~   91 (434)
T PRK08472         14 NLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIG-DKVFISKEGLN   91 (434)
T ss_pred             CcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCC-CEEEeCCCceE
Confidence            67788999999999999999985 99999999964221 24899999999999999999999999999 59999999999


Q ss_pred             EeCCCCCccceecCCcccccCCCCC
Q psy5598         102 TPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       102 Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ||+|++|||||+|++|+|||+++++
T Consensus        92 v~vg~~llGRViD~~G~plD~~g~~  116 (434)
T PRK08472         92 IPVGRNLLGRVVDPLGRPIDGKGAI  116 (434)
T ss_pred             EEcChhhcCCEECCCCCcccCCCCC
Confidence            9999999999999999999998764

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=99.90  E-value=2.5e-23  Score=175.92  Aligned_cols=100  Identities=54%  Similarity=0.855  Sum_probs=92.0

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEeC
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTPV  104 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vpv  104 (128)
                      +.||+|++|.|++++++|+..+++||+|+|...++....|||++|+++.+.++||+++.||+ .| ++|.+||++++||+
T Consensus         2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G-~~V~~tg~~~~V~v   80 (460)
T PRK04196          2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKD-TKVRFTGEPLKLPV   80 (460)
T ss_pred             ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCC-CEEEeCCCccEEEc
Confidence            46999999999999999997899999999964344457999999999999999999999999 89 59999999999999


Q ss_pred             CCCCccceecCCcccccCCCCC
Q psy5598         105 SEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       105 g~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |++|||||+|++|+|||+++++
T Consensus        81 g~~lLGRVvD~~G~PlD~~~~i  102 (460)
T PRK04196         81 SEDMLGRIFDGLGRPIDGGPEI  102 (460)
T ss_pred             CcccccCEECccCCCccCCCCC
Confidence            9999999999999999998765

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.90  E-value=2.7e-23  Score=174.81  Aligned_cols=101  Identities=19%  Similarity=0.330  Sum_probs=91.7

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc--eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS--YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL  100 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~--~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~  100 (128)
                      .+.+.+|+|++|.|++|+++|+ .+++||+|.|...++.  .+.|||++|+++.+.++||++++||++| ++|+++|+++
T Consensus        14 ~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g-~~V~~tg~~~   91 (438)
T PRK07721         14 DPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPG-CLVEATGKPL   91 (438)
T ss_pred             CccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCC-CEEEECCCcc
Confidence            6677899999999999999986 5999999999643222  4899999999999999999999999999 5999999999


Q ss_pred             eEeCCCCCccceecCCcccccCCCC
Q psy5598         101 RTPVSEDMLGRVFNGSGKPIDKDCC  125 (128)
Q Consensus       101 ~Vpvg~~lLGRViD~lG~PlDg~~~  125 (128)
                      +||+|++|||||+|++|+|||+++.
T Consensus        92 ~v~vg~~llGRv~d~~G~plD~~~~  116 (438)
T PRK07721         92 EVKVGSGLIGQVLDALGEPLDGSAL  116 (438)
T ss_pred             EEEechhhcCCEECcCCCccCCCCC
Confidence            9999999999999999999998753

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=99.90  E-value=4.1e-23  Score=173.78  Aligned_cols=103  Identities=21%  Similarity=0.249  Sum_probs=94.4

Q ss_pred             CCceeeeEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR  101 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~  101 (128)
                      .+.+.+|+|++|.|++++++|++ .+++||+|.|...+++.+.|||++|+++.++++||+++.|++.| ++|++++++++
T Consensus        13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~   91 (442)
T PRK08927         13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRG-CRAVIANAAAA   91 (442)
T ss_pred             CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEeCCCccE
Confidence            67778999999999999999984 59999999996534435899999999999999999999999999 59999999999


Q ss_pred             EeCCCCCccceecCCcccccCCCCC
Q psy5598         102 TPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       102 Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ||+|++|||||+|++|+|||+++++
T Consensus        92 v~vg~~llGRVid~~G~piDg~~~~  116 (442)
T PRK08927         92 VRPSRAWLGRVVNALGEPIDGKGPL  116 (442)
T ss_pred             EECChhhCCCEEccCCCCccCCCCC
Confidence            9999999999999999999998764

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=99.90  E-value=3.1e-23  Score=176.82  Aligned_cols=120  Identities=22%  Similarity=0.300  Sum_probs=106.1

Q ss_pred             CCcchHHHHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEE
Q psy5598           1 MSISSKQALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQV   79 (128)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~   79 (128)
                      |+++.. ...+-+++++++|+..+. +.+|+|++|.|++++++|++++++||+|.|.  ++  ..|||++++++.+.+++
T Consensus         1 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~   75 (502)
T PRK09281          1 MQINPE-EISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP--GG--VYGIALNLEEDNVGAVI   75 (502)
T ss_pred             CCCCHH-HHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC--CC--cEEEEEEEcCCeEEEEE
Confidence            444333 344678889999987754 4689999999999999999889999999995  44  79999999999999999


Q ss_pred             ccCCCCcccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          80 FEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        80 ~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |+++.||+.| +.|.++|++++||+|++|||||+|++|+|||+++++
T Consensus        76 ~~~~~gi~~g-~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~  121 (502)
T PRK09281         76 LGDYEDIKEG-DTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI  121 (502)
T ss_pred             ecCcccccCC-CeeeecCCceEEecCHHhcCCEEccCCCCcCCCCCC
Confidence            9999999999 599999999999999999999999999999998764

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=99.90  E-value=5.1e-23  Score=173.52  Aligned_cols=110  Identities=17%  Similarity=0.180  Sum_probs=96.7

Q ss_pred             HHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCcccC
Q psy5598          13 VLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDAK   89 (128)
Q Consensus        13 ~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~G   89 (128)
                      +.+.++..  .+.+.+|+|++|.|.++++.|+ .+++||+|.|...++.   .+.|||++|+++.+.++||+++.||++|
T Consensus        15 ~~~~~~~~--~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g   91 (451)
T PRK05688         15 YAEAISLP--AQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPG   91 (451)
T ss_pred             HHHHHhcC--CccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCC
Confidence            44544443  6667799999999999999998 4999999999542331   4899999999999999999999999999


Q ss_pred             CcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          90 NTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        90 ~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                       +.|+++|++++||+|++|||||+|++|+|||+++++
T Consensus        92 -~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~  127 (451)
T PRK05688         92 -ARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPM  127 (451)
T ss_pred             -CEEEECCCccEEEecccccCCEEeccCceecCCCCC
Confidence             599999999999999999999999999999998764

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.90  E-value=3.9e-23  Score=174.17  Aligned_cols=112  Identities=24%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             hHHHHhcccC--CCCceeeeEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCccc
Q psy5598          12 NVLAVTRDYI--SQPRITYKTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA   88 (128)
Q Consensus        12 ~~~~~~~~~~--~~~~~~~G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~   88 (128)
                      .++++.+.|.  ..+.+.+|+|++|.|.++++.|++ ++++||+|.|+..++ ...|||++|+++.+.+|||+++.||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~-~~~~eVv~~~~~~~~l~~~~~~~gi~~   87 (450)
T PRK06002          9 RLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGG-THLGEVVRVDPDGVTVKPFEPRIEIGL   87 (450)
T ss_pred             HHHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCC-cEEEEEEEEeCCeEEEEEccCCcCCCC
Confidence            4677888887  345677999999999999999985 699999999964333 489999999999999999999999999


Q ss_pred             CCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          89 KNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        89 G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |+ +|.+ ++++++++|++|||||+|++|+|||+++++
T Consensus        88 g~-~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~  123 (450)
T PRK06002         88 GD-AVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGPL  123 (450)
T ss_pred             CC-EEEe-CCCceeecCcccccCEECCCCcCCCCCCCC
Confidence            95 9999 668999999999999999999999998764

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=99.90  E-value=4.5e-23  Score=175.39  Aligned_cols=114  Identities=20%  Similarity=0.290  Sum_probs=103.5

Q ss_pred             HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      .+.+-+++++++|+.... +.+|+|.+|.|+++++.|++++++||+|+|.  ++  ..|||++|+++.+.+++|+++.||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~--~~--~~g~Vi~l~~~~v~~~~l~~~~gi   82 (497)
T TIGR03324         7 KAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP--GG--LLGIAFNVDEDEVGVVLLGEYSHL   82 (497)
T ss_pred             HHHHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCCcCC
Confidence            355678888899987754 4689999999999999998889999999994  33  799999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| +.|.++|++++||||++|||||+|++|+|||+++++
T Consensus        83 ~~G-~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~  121 (497)
T TIGR03324        83 QAG-DEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPL  121 (497)
T ss_pred             cCC-CEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCC
Confidence            999 599999999999999999999999999999998765

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK05922 type III secretion system ATPase; Validated

Probab=99.90  E-value=3.7e-23  Score=173.75  Aligned_cols=102  Identities=19%  Similarity=0.223  Sum_probs=93.1

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT  102 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V  102 (128)
                      .+.+.+|+|++|.|++++++|+. +++||+|.|...++..+.|||++|+++.+.+|||++++||++|+ +|++++++++|
T Consensus        15 ~~~~~~g~v~~v~g~~i~~~g~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~-~V~~~~~~~~v   92 (434)
T PRK05922         15 QPYRECGLLSRVSGNLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGA-EVLPLRRPPSL   92 (434)
T ss_pred             CcceeeeEEEEEEccEEEEEeCC-CCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCC-EEEeCCCCcEE
Confidence            56678999999999999999985 89999999974323348999999999999999999999999995 99999999999


Q ss_pred             eCCCCCccceecCCcccccCCCCC
Q psy5598         103 PVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       103 pvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |+|++|||||+|++|+|||+++++
T Consensus        93 ~vg~~llGrv~d~~G~pld~~~~~  116 (434)
T PRK05922         93 HLSDHLLGRVLDGFGNPLDGKEQL  116 (434)
T ss_pred             EcChhhcCCEeCCCCCccCCCCCC
Confidence            999999999999999999998764

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=99.90  E-value=5.3e-23  Score=175.23  Aligned_cols=114  Identities=21%  Similarity=0.324  Sum_probs=103.9

Q ss_pred             HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      ...+-+++.+++|...+. +.+|+|++|.|+++++.|++++++||+|.|.  ++  ..|+|++|+++.+.+++|+++.||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~--~~--~~g~V~~l~~~~v~~~~l~~~~gi   82 (502)
T PRK13343          7 EWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFE--GG--SRGFAFNLEEELVGAVLLDDTADI   82 (502)
T ss_pred             HHHHHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEEC--CC--cEEEEEEecCCeEEEEEeeCCCCC
Confidence            455778888999987654 4689999999999999998889999999994  44  799999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| +.|+++|++++||+|++|||||+|++|+|||+++++
T Consensus        83 ~~G-~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i  121 (502)
T PRK13343         83 LAG-TEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL  121 (502)
T ss_pred             CCC-CEeEecCCcceeecCHHhcCCEECCCCCcccCCCCC
Confidence            999 599999999999999999999999999999998775

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=99.90  E-value=4.3e-23  Score=173.94  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCccc
Q psy5598          12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDA   88 (128)
Q Consensus        12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~   88 (128)
                      ++.++++..  .+.+.+|+|++|.|.+|++.|+ .+++||+|.|...++.   .+.||||+|+++.+++|||+++.||+.
T Consensus        14 ~~~~~~~~~--~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~   90 (455)
T PRK07960         14 NFEAKMAQL--PAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILP   90 (455)
T ss_pred             HHHHHHhcC--CccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCC
Confidence            345544443  6667799999999999999997 6999999999532331   378999999999999999999999999


Q ss_pred             CCcEEEEc-------CCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          89 KNTVCEFT-------GDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        89 G~~~V~~t-------g~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      | ++|+++       |++++||||++|||||+|++|+|||+++++
T Consensus        91 g-~~v~~~~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~  134 (455)
T PRK07960         91 G-ARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAP  134 (455)
T ss_pred             C-CEEEECCcccccCCCceEEECCcccccCEECCCccccCCCCCC
Confidence            9 599998       999999999999999999999999998764

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=99.90  E-value=5.3e-23  Score=172.39  Aligned_cols=101  Identities=27%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      +.+.+|+|++|.|+++++.+. ++++||+|.|...++..+.|||++|+++.+.++||++++||+.| ++|+++|++++||
T Consensus         2 ~~~~~G~V~~v~g~~v~v~~~-~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G-~~V~~tg~~~~v~   79 (422)
T TIGR02546         2 PVRVRGRVTEVSGTLLKAVLP-GARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPG-SEVIPTGRPLSIR   79 (422)
T ss_pred             CcceeEEEEEEECcEEEEEEC-CCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCC-CEEEECCCCceEE
Confidence            346689999999999999975 69999999996433445899999999999999999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +|++|||||+|++|+|||+++++
T Consensus        80 vg~~lLGrViD~~G~plD~~~~~  102 (422)
T TIGR02546        80 VGEALLGRVLDGFGRPLDGKGEL  102 (422)
T ss_pred             eChhhccCEeCCCCCcccCCCCC
Confidence            99999999999999999998764

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=99.89  E-value=5.7e-23  Score=173.37  Aligned_cols=99  Identities=83%  Similarity=1.243  Sum_probs=91.3

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCccc-CCcEEEEcCCeeeEeCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDA-KNTVCEFTGDILRTPVS  105 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~-G~~~V~~tg~~~~Vpvg  105 (128)
                      +|++|++|.|+++++.|++.+++||+|.|...++....|||++|+++.+.+|||++++||++ | +.|++++++++||||
T Consensus         1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g-~~V~~t~~~~~v~vg   79 (466)
T TIGR01040         1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKK-TTCEFTGDILRTPVS   79 (466)
T ss_pred             CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCC-CEEEECCCccEEEcC
Confidence            47899999999999999978999999999644454578999999999999999999999998 9 599999999999999


Q ss_pred             CCCccceecCCcccccCCCCC
Q psy5598         106 EDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       106 ~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++|||||||++|+|||+++++
T Consensus        80 ~~lLGRVid~~G~piD~~~~~  100 (466)
T TIGR01040        80 EDMLGRVFNGSGKPIDKGPPV  100 (466)
T ss_pred             cccccCEECccccccCCCCCC
Confidence            999999999999999998764

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK06820 type III secretion system ATPase; Validated

Probab=99.89  E-value=1.7e-22  Score=169.99  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=101.4

Q ss_pred             HHHHhHHHHhcccCCC--CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCC
Q psy5598           8 ALRENVLAVTRDYISQ--PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSG   85 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~G   85 (128)
                      .+-+.+++++++|...  +.+.+|+|++|.|.++++.+. .+++||+|.|.. ++  ..|||++|+++.+.++||+++.|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~g   83 (440)
T PRK06820          8 RLTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLP-GVAQGELCRIEP-QG--MLAEVVSIEQEMALLSPFASSDG   83 (440)
T ss_pred             HHHHHHHHHHHhcCCCCCceeEeeEEEEEECcEEEEEEC-CCCcCCEEEEec-CC--eEEEEEEEeCCeEEEEEccCccC
Confidence            3447788899998765  466789999999999999975 699999999953 33  79999999999999999999999


Q ss_pred             cccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCC
Q psy5598          86 IDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCC  125 (128)
Q Consensus        86 i~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~  125 (128)
                      |++| ++|+++|+++++|+|++|||||+|++|+|||++++
T Consensus        84 i~~g-~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~  122 (440)
T PRK06820         84 LRCG-QWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPP  122 (440)
T ss_pred             CCCC-CEEEECCCCcEEEechhhcCCEECccCCccCCCCC
Confidence            9999 59999999999999999999999999999999864

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=99.89  E-value=1.2e-22  Score=173.18  Aligned_cols=114  Identities=22%  Similarity=0.324  Sum_probs=103.3

Q ss_pred             HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      ...+-+++.+++|+..+. +.+|+|++|.|++++++|+.++++||+|+|.  ++  ..|||++++++.+.+++|+++.|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi   81 (501)
T TIGR00962         6 EISELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE--GG--VQGIALNLEEDSVGAVIMGDYSNI   81 (501)
T ss_pred             HHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC--CC--eEEEEEEecCCeEEEEEecCCcCC
Confidence            344678888899987754 4689999999999999999789999999994  44  789999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| +.|.++|++++||+|++|||||+|++|+|||+++++
T Consensus        82 ~~G-~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~  120 (501)
T TIGR00962        82 REG-STVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI  120 (501)
T ss_pred             CCC-CeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCc
Confidence            999 599999999999999999999999999999998764

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>PRK06315 type III secretion system ATPase; Provisional

Probab=99.89  E-value=1.4e-22  Score=170.59  Aligned_cols=102  Identities=20%  Similarity=0.211  Sum_probs=92.3

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT  102 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V  102 (128)
                      .+.+.+|+|++|.|+++++.|+ .+++||+|.|...++..+.|||++|+++.+.++||+++.||++| ++|.++|++++|
T Consensus        19 ~~~~~~G~v~~i~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~~g~~~~v   96 (442)
T PRK06315         19 QLTTVVGRITEVVGMLIKAVVP-DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS-SEVIPTGLPLHI   96 (442)
T ss_pred             CcceeccEEEEEECCEEEEEEC-CcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEE
Confidence            6677899999999999999987 59999999996433225899999999999999999999999999 599999999999


Q ss_pred             eCCCCCccceecCCcccccC--CCCC
Q psy5598         103 PVSEDMLGRVFNGSGKPIDK--DCCS  126 (128)
Q Consensus       103 pvg~~lLGRViD~lG~PlDg--~~~~  126 (128)
                      |+|++|||||+|++|+|||+  ++++
T Consensus        97 ~vg~~llGrv~d~~G~pld~~~~~~~  122 (442)
T PRK06315         97 RAGNGLLGRVLNGLGEPIDTETKGPL  122 (442)
T ss_pred             EecccccCCEEeccCcccccccCCCc
Confidence            99999999999999999998  6553

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=99.89  E-value=8.9e-23  Score=172.45  Aligned_cols=99  Identities=51%  Similarity=0.821  Sum_probs=90.7

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcE-EEEcCCeeeEeCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTV-CEFTGDILRTPVS  105 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~-V~~tg~~~~Vpvg  105 (128)
                      +|++|++|.|++++++|+.++++||+|.|...++....|||++|+++.+.+|||+++.||+.|+ . |.+||++++||||
T Consensus         1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~-~~V~~tg~~~~v~vg   79 (458)
T TIGR01041         1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTG-TKVRFTGETLKLPVS   79 (458)
T ss_pred             CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCC-cEEEECCCceEEEcC
Confidence            4899999999999999997899999999953344447899999999999999999999999995 6 9999999999999


Q ss_pred             CCCccceecCCcccccCCCCC
Q psy5598         106 EDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       106 ~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++|||||+|++|+|||+++++
T Consensus        80 ~~lLGRViD~~G~plD~~~~~  100 (458)
T TIGR01041        80 EDMLGRILNGSGEPIDGGPEI  100 (458)
T ss_pred             hhhccCEEccCCcccCCCCCC
Confidence            999999999999999998764

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=99.89  E-value=2e-22  Score=169.25  Aligned_cols=98  Identities=34%  Similarity=0.564  Sum_probs=90.4

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCC
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVS  105 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg  105 (128)
                      ..||+|++|.|+++++++. .+++||+|.|...++ ...+||++|+++.+.+++|++++||+.| ++|.++|++++||||
T Consensus         3 ~~~g~v~~i~G~~v~v~~~-~~~~ge~~~i~~~~~-~~~geVi~~~~~~v~~~~~~~t~Gl~~g-~~V~~tg~~~~vpvg   79 (436)
T PRK02118          3 KIYTKITDITGNVITVEAE-GVGYGELATVERKDG-SSLAQVIRLDGDKVTLQVFGGTRGISTG-DEVVFLGRPMQVTYS   79 (436)
T ss_pred             ceeEEEEEEECcEEEEEeC-CCCCCCEEEEEcCCC-CEEEEEEEEcCCEEEEEEecCCcCCCCC-CEEEeCCCceEEEcC
Confidence            4699999999999999995 699999999975444 4789999999999999999999999999 599999999999999


Q ss_pred             CCCccceecCCcccccCCCCC
Q psy5598         106 EDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       106 ~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++|||||||++|+|||++|++
T Consensus        80 ~~lLGRV~d~~G~PiD~~~~~  100 (436)
T PRK02118         80 ESLLGRRFNGSGKPIDGGPEL  100 (436)
T ss_pred             ccccCCEEccCCcccCCCCCC
Confidence            999999999999999988764

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=99.88  E-value=2.6e-22  Score=168.04  Aligned_cols=97  Identities=23%  Similarity=0.319  Sum_probs=88.9

Q ss_pred             eEEEEEECCEEEEEcCCCC-CcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598          29 KTVSGVNGPLVILDEVKFP-KYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED  107 (128)
Q Consensus        29 G~V~~I~G~~i~v~g~~~~-~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~  107 (128)
                      |+|++|.|++++++|+..+ ++||+|.|...++....|||++|+++.+.++||++++||++| +.|++++++++||+|++
T Consensus         1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G-~~V~~tg~~~~i~vg~~   79 (418)
T TIGR03498         1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLG-CAVFAREGPLAVRPHPS   79 (418)
T ss_pred             CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEECCCccEEEeChh
Confidence            7999999999999998753 999999996434435899999999999999999999999999 59999999999999999


Q ss_pred             CccceecCCcccccCCCCC
Q psy5598         108 MLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       108 lLGRViD~lG~PlDg~~~~  126 (128)
                      |||||+|++|+|||+++++
T Consensus        80 lLGRViD~lG~plD~~~~~   98 (418)
T TIGR03498        80 WLGRVINALGEPIDGKGPL   98 (418)
T ss_pred             hcCCEECCCCCccCCCCCC
Confidence            9999999999999998764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=99.88  E-value=3e-22  Score=167.44  Aligned_cols=96  Identities=22%  Similarity=0.332  Sum_probs=89.1

Q ss_pred             eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598          29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM  108 (128)
Q Consensus        29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l  108 (128)
                      |+|++|.|++++++|+ .+++||+|.|...++..+.|||++|+++.+.+++|+++.||++| +.|+++|++++||+|++|
T Consensus         1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~v~vg~~l   78 (411)
T TIGR03496         1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPG-ARVFPLEGPLRLPVGDSL   78 (411)
T ss_pred             CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCC-CEEEECCCccEEEcchhh
Confidence            7999999999999998 79999999996434545899999999999999999999999999 599999999999999999


Q ss_pred             ccceecCCcccccCCCCC
Q psy5598         109 LGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       109 LGRViD~lG~PlDg~~~~  126 (128)
                      ||||+|++|+|||+++++
T Consensus        79 lGrVid~~G~pld~~~~~   96 (411)
T TIGR03496        79 LGRVIDGLGRPLDGKGPL   96 (411)
T ss_pred             cCCEECCCCCCcCCCCCC
Confidence            999999999999998764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=99.88  E-value=3.8e-22  Score=166.87  Aligned_cols=96  Identities=22%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598          29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM  108 (128)
Q Consensus        29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l  108 (128)
                      |+|++|.|++|++.|+ .+++||+|.|...++..+.+||++|.++.+.++||+++.||+.| ++|.++|++++||+|++|
T Consensus         1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~vpvg~~l   78 (413)
T TIGR03497         1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPG-SLVIATGRPLAIKVGKGL   78 (413)
T ss_pred             CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCC-CEEEEcCCeeEEEcchhh
Confidence            7999999999999997 69999999996433445899999999999999999999999999 599999999999999999


Q ss_pred             ccceecCCcccccCCCCC
Q psy5598         109 LGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       109 LGRViD~lG~PlDg~~~~  126 (128)
                      ||||+|++|+|||+++++
T Consensus        79 LGRVid~~G~plD~~~~~   96 (413)
T TIGR03497        79 LGRVLDGLGRPLDGEGPI   96 (413)
T ss_pred             cCCEEcCCCCcccCCCCC
Confidence            999999999999988764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=99.88  E-value=5.9e-22  Score=166.84  Aligned_cols=100  Identities=22%  Similarity=0.310  Sum_probs=91.2

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC-CceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND-GSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILR  101 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~-~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~  101 (128)
                      .+.+.+|+|++|.|+++++.|. .+++||+|.|...+ +..+.|||++|+++.+.++||+++.||++| ++|+++|++++
T Consensus        19 ~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G-~~V~~tg~~~~   96 (440)
T TIGR01026        19 RLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPG-SKVLATGEGLS   96 (440)
T ss_pred             CccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCC-CEEEeCCCccE
Confidence            6677899999999999999986 69999999996321 223899999999999999999999999999 59999999999


Q ss_pred             EeCCCCCccceecCCcccccCCC
Q psy5598         102 TPVSEDMLGRVFNGSGKPIDKDC  124 (128)
Q Consensus       102 Vpvg~~lLGRViD~lG~PlDg~~  124 (128)
                      ||+|++|||||||++|+|||+++
T Consensus        97 v~vg~~llGRVid~~G~plD~~~  119 (440)
T TIGR01026        97 IKVGDGLLGRVLDGLGKPIDGKG  119 (440)
T ss_pred             EEcChhhhhceecCCCcccCCCC
Confidence            99999999999999999999887

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=99.87  E-value=7.9e-22  Score=165.72  Aligned_cols=97  Identities=23%  Similarity=0.307  Sum_probs=89.1

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      +.+.+|+|++|.|+++++.+. ++++||+|.|.. ++  ..|||++|+++.+.++||+++.||+.| ++|+++|++++||
T Consensus        18 ~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~g-~~V~~tg~~~~v~   92 (433)
T PRK07594         18 GYCRWGRIQDVSATLLNAWLP-GVFMGELCCIKP-GE--ELAEVVGINGSKALLSPFTSTIGLHCG-QQVMALRRRHQVP   92 (433)
T ss_pred             ccceeeEEEEEECCEEEEEEC-CcCCCCEEEEec-CC--eEEEEEEEcCCeEEEEEccCCcCCCCC-CEEEeCCCccEEE
Confidence            345689999999999999975 699999999953 33  789999999999999999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCC  125 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~  125 (128)
                      +|++|||||+|++|+|||++++
T Consensus        93 vg~~llGrVid~~G~pld~~~~  114 (433)
T PRK07594         93 VGEALLGRVIDGFGRPLDGREL  114 (433)
T ss_pred             eChhhccCEEcccCCCcCCCCC
Confidence            9999999999999999998865

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.87  E-value=1.3e-21  Score=164.37  Aligned_cols=99  Identities=12%  Similarity=0.207  Sum_probs=91.1

Q ss_pred             CCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeE
Q psy5598          23 QPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRT  102 (128)
Q Consensus        23 ~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~V  102 (128)
                      .+.+.+|+|++|.|.++++.|+ ++++||+|.|.  ++ .+.|||++|+++.+.++||+++.||++| ++|.+++++++|
T Consensus        17 ~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~--~~-~~~~eV~~~~~~~~~~~~~~~~~gi~~g-~~v~~~~~~~~v   91 (432)
T PRK06793         17 PFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVG--EH-NVLCEVIAIEKENNMLLPFEQTEKVCYG-DSVTLIAEDVVI   91 (432)
T ss_pred             CccceeeEEEEEEEEEEEEEcC-CCCcCCEEEEC--CC-CEEEEEEEecCCcEEEEEccCccCCCCC-CEEEECCCccEE
Confidence            5667799999999999999997 69999999993  33 3799999999999999999999999999 599999999999


Q ss_pred             eCCCCCccceecCCcccccCCCCC
Q psy5598         103 PVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       103 pvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |||++|||||+|++|+|+|+++++
T Consensus        92 ~vg~~~lGrV~d~~G~piD~~~~~  115 (432)
T PRK06793         92 PRGNHLLGKVLSANGEVLNEEAEN  115 (432)
T ss_pred             EcCHhhccCEECcCCccCCCCCCC
Confidence            999999999999999999987553

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=99.86  E-value=2.7e-21  Score=163.58  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             eeEEEEEECCEEEEEcCCC--CCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598          28 YKTVSGVNGPLVILDEVKF--PKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV  104 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~--~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv  104 (128)
                      +|+|++|.|++++++|+.+  +++||+|.|...++ .+.+||++| +++.+.++||+++.||+.| ++|.+++++++||+
T Consensus         3 ~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~-~~~~eVv~~l~~~~v~l~~~~~~~gl~~G-~~V~~tg~~~~v~v   80 (461)
T PRK12597          3 IGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGG-PTLLEVKQHLDETTVRAIALGSTSGLARG-DEVRNTGGPIEVPV   80 (461)
T ss_pred             ccEEEEEECcEEEEEECCCCCcCccCEEEEecCCC-cEEEEEEEEcCCCeEEEEEecCccCCCCC-CEEEeCCCceEEEc
Confidence            6999999999999999865  99999999964233 378999999 9999999999999999999 59999999999999


Q ss_pred             CCCCccceecCCcccccCCCCC
Q psy5598         105 SEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       105 g~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |++|||||+|++|+|||+++++
T Consensus        81 g~~llGRVid~~G~plD~~~~~  102 (461)
T PRK12597         81 GEAVLGRLLDVLGEPLDGGPPL  102 (461)
T ss_pred             ChhhcCCEEeeccccccCCCCC
Confidence            9999999999999999998765

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=99.86  E-value=3.2e-21  Score=164.26  Aligned_cols=94  Identities=11%  Similarity=0.119  Sum_probs=87.7

Q ss_pred             EEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCCc
Q psy5598          30 TVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDML  109 (128)
Q Consensus        30 ~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~lL  109 (128)
                      +|++|.|.++++.|+.++++||+|++.  ++....|+|++++++.+.+++|+++.||+.| ++|.+||++++||||++||
T Consensus         4 ~V~~v~~~i~~v~Gl~~~~~ge~~~~~--~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg~~lL   80 (507)
T PRK07165          4 KIKSIFDYIVEVKGEYDYQQNQFFTLK--NNPNVKAFVISATEDKAYLLINNEKGKIKIN-DELIELNNTNKVKTSKEYF   80 (507)
T ss_pred             EEEEEeceEEEEEcccCCCcCCEEEEC--CCCeEEEEEEEEeCCeEEEEEccCccCCCCC-CEEEECCCccEEECCcccc
Confidence            789999999999999889999999994  2334899999999999999999999999999 5999999999999999999


Q ss_pred             cceecCCcccccCCCCC
Q psy5598         110 GRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       110 GRViD~lG~PlDg~~~~  126 (128)
                      |||+|++|+|||+++++
T Consensus        81 GRVvd~lG~piDg~g~i   97 (507)
T PRK07165         81 GKIIDIDGNIIYPEAQN   97 (507)
T ss_pred             CCEECCCCcccCCCCCC
Confidence            99999999999998854

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=99.86  E-value=2.5e-21  Score=164.24  Aligned_cols=96  Identities=28%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCC
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVS  105 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg  105 (128)
                      ..+|+|++|.|+++++.|+.++++||+|.|.  ++  ..|+|++|+++.+.+++|+++.||+.| +.|+++|++++||+|
T Consensus         5 ~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~--~~--~~g~vi~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~~~~vpvg   79 (485)
T CHL00059          5 VNTGTVLQVGDGIARIYGLDEVMAGELVEFE--DG--TIGIALNLESNNVGVVLMGDGLMIQEG-SSVKATGKIAQIPVS   79 (485)
T ss_pred             eeeEEEEEEeccEEEEeccccCCcCCEEEEC--CC--CEEEEEEEcCCEEEEEEeeCCCCCCCC-CEEEECCCcceEEcC
Confidence            4589999999999999999789999999994  44  689999999999999999999999999 599999999999999


Q ss_pred             CCCccceecCCcccccCCCCC
Q psy5598         106 EDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       106 ~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++|||||+|++|+|||+++++
T Consensus        80 ~~llGRVvd~lG~piDg~~~~  100 (485)
T CHL00059         80 EAYLGRVVNALAKPIDGKGEI  100 (485)
T ss_pred             HhhcCCEECCCCCeeCCCCCc
Confidence            999999999999999998765

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=99.86  E-value=3.2e-21  Score=163.05  Aligned_cols=99  Identities=24%  Similarity=0.333  Sum_probs=88.7

Q ss_pred             eeeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          27 TYKTVSGVNGPLVILDEVK--FPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      .+|+|++|.|+++++.|+.  .+++||+|.|...++....|||++ |+++.+.++||+++.||++| ++|.+++++++||
T Consensus         2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G-~~V~~tg~~~~v~   80 (463)
T PRK09280          2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRG-MEVIDTGAPISVP   80 (463)
T ss_pred             CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCC-CEEEeCCCceEEE
Confidence            3799999999999999973  259999999952223358999999 99999999999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +|++|||||+|++|+|||+++++
T Consensus        81 vg~~lLGRViD~~G~pld~~~~~  103 (463)
T PRK09280         81 VGKATLGRIFNVLGEPIDEKGPI  103 (463)
T ss_pred             cChhhcCCEEeeeccccCCCCCc
Confidence            99999999999999999998764

>PRK08149 ATP synthase SpaL; Validated

Probab=99.86  E-value=4.1e-21  Score=161.21  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=88.7

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCC-CceEE--EEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLND-GSYRA--GQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL  100 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~-~~~~~--geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~  100 (128)
                      ..+.+|+|++|.|++++++++ .+++||+|+|...+ +..+.  |||++|+++.+++|||+++.|++.| ++|.++++++
T Consensus         3 ~~~~~g~v~~i~g~~i~~~~~-~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g-~~v~~~~~~~   80 (428)
T PRK08149          3 LLQRLAHPLRIQGPIIEAELP-DVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQ-VVLKPTGKPL   80 (428)
T ss_pred             ceeeeeEEEEEEeeEEEEEEC-CCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCC-CEEEEcCCcC
Confidence            345689999999999999986 69999999995421 12245  8999999999999999999999999 5999999999


Q ss_pred             eEeCCCCCccceecCCcccccCCC
Q psy5598         101 RTPVSEDMLGRVFNGSGKPIDKDC  124 (128)
Q Consensus       101 ~Vpvg~~lLGRViD~lG~PlDg~~  124 (128)
                      +||+|++|||||+|++|+|||+++
T Consensus        81 ~v~vg~~llGrv~d~~G~piD~~~  104 (428)
T PRK08149         81 SVWVGEALLGAVLDPTGKIVERFD  104 (428)
T ss_pred             EEEeChhhcCCeeCCCCCCcCCCC
Confidence            999999999999999999999876

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=99.86  E-value=2.6e-21  Score=166.76  Aligned_cols=92  Identities=30%  Similarity=0.514  Sum_probs=86.5

Q ss_pred             eEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCCC
Q psy5598          29 KTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDM  108 (128)
Q Consensus        29 G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~l  108 (128)
                      |+|.+|+|++++++|+.++++||+|+|.  + +.+.|||++|+++.+.+|+|++++||++|+ +|++||++++|++|++|
T Consensus         2 G~I~~V~Gpvv~a~g~~~~~~gE~v~v~--~-~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~-~V~~tg~plsV~lGpgl   77 (578)
T TIGR01043         2 GRIIRVSGPLVVADGMKGAQMYEVVKVG--E-EGLIGEIIRIEGDKAFIQVYEETSGIKPGE-PVVGTGAPLSVELGPGL   77 (578)
T ss_pred             CEEEEEECCEEEEecCCCCCcCCEEEEC--C-CcEEEEEEEEcCCeEEEEECCCCCCCCCCC-EEEECCCccEEEcCHHH
Confidence            8999999999999999779999999994  2 248999999999999999999999999995 99999999999999999


Q ss_pred             ccceecCCcccccCCC
Q psy5598         109 LGRVFNGSGKPIDKDC  124 (128)
Q Consensus       109 LGRViD~lG~PlDg~~  124 (128)
                      ||||||++|+|||+.+
T Consensus        78 LGrV~DgigrPLd~~~   93 (578)
T TIGR01043        78 LGSIYDGVQRPLDVLK   93 (578)
T ss_pred             hcceeccCCccccCcc
Confidence            9999999999999863

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=99.85  E-value=4.6e-21  Score=165.44  Aligned_cols=94  Identities=32%  Similarity=0.576  Sum_probs=88.2

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE  106 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~  106 (128)
                      .+|+|.+|+|++++++|+..+++||+|.|.   +..+.|||++++++.+.+|+|++|+||++|+ +|.+||++++|++|+
T Consensus         3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~---~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~-~V~~tg~plsv~lGp   78 (586)
T PRK04192          3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVG---EEGLIGEIIRIEGDKATIQVYEETSGIKPGE-PVEFTGEPLSVELGP   78 (586)
T ss_pred             ceeEEEEEECcEEEEEeCCCCCccCEEEEC---CCcEEEEEEEEeCCceEEEEecCCcCCCCCC-EEEeCCCccEEEcCH
Confidence            479999999999999999779999999994   2348999999999999999999999999995 999999999999999


Q ss_pred             CCccceecCCcccccCCC
Q psy5598         107 DMLGRVFNGSGKPIDKDC  124 (128)
Q Consensus       107 ~lLGRViD~lG~PlDg~~  124 (128)
                      +|||||||++|+|||+.+
T Consensus        79 glLGrv~Dg~grPLd~~~   96 (586)
T PRK04192         79 GLLGSIFDGIQRPLDELA   96 (586)
T ss_pred             HhcCCeecCCCCcccccc
Confidence            999999999999999875

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=99.85  E-value=3e-21  Score=166.29  Aligned_cols=94  Identities=27%  Similarity=0.500  Sum_probs=87.8

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE  106 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~  106 (128)
                      ++|+|.+|+|++++++|++++++||+|+|.  ++ .+.|||++|+++.+.+|+|+++.||++|+ +|.+||++++|++||
T Consensus         1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~--~~-~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~-~V~~tg~~lsv~lGp   76 (591)
T TIGR01042         1 EYGYIYKVSGPVVVAENMAGAAMYELVRVG--HD-ELVGEIIRLEGDKATIQVYEETSGLTVGD-PVLRTGKPLSVELGP   76 (591)
T ss_pred             CceEEEEEECCEEEEecCCCCCcCCEEEEC--CC-ceEEEEEEEcCCeEEEEEccCccCCCCCC-EEEeCCCccEEEcCH
Confidence            379999999999999999889999999994  22 38999999999999999999999999995 999999999999999


Q ss_pred             CCccceecCCcccccCCC
Q psy5598         107 DMLGRVFNGSGKPIDKDC  124 (128)
Q Consensus       107 ~lLGRViD~lG~PlDg~~  124 (128)
                      +|||||+|++|||||+.+
T Consensus        77 glLG~V~DgigrPLd~~~   94 (591)
T TIGR01042        77 GILGNIFDGIQRPLKAIA   94 (591)
T ss_pred             HHhhcccCcCCCchHHHH
Confidence            999999999999999754

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=99.85  E-value=8.8e-21  Score=161.24  Aligned_cols=98  Identities=22%  Similarity=0.303  Sum_probs=87.5

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCc---CcEEEEEeCC--Cc--eEEEEEEEEeC-CEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKY---AEIVQLRLND--GS--YRAGQVLEVSG-SKAVVQVFEGTSGIDAKNTVCEFTGD   98 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~i---Ge~~~i~~~~--~~--~~~geVv~~~~-~~v~l~~~~~~~Gi~~G~~~V~~tg~   98 (128)
                      .+|+|++|.|.+|++.|+. +++   ||+|.+...+  +.  .+.+||++|.+ +.+.++||++++||+.| ++|.++++
T Consensus        15 ~~G~V~~v~G~viev~~~~-~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G-~~V~~tg~   92 (494)
T CHL00060         15 NLGRITQIIGPVLDVAFPP-GKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRG-MEVIDTGA   92 (494)
T ss_pred             cceEEEEEEccEEEEEecC-CCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCC-CEEEeCCC
Confidence            4799999999999999974 555   9999995322  21  47899999998 99999999999999999 59999999


Q ss_pred             eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          99 ILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        99 ~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +++||+|++|||||+|++|+|||+++++
T Consensus        93 ~~~vpvg~~lLGRVid~~G~piDg~~~~  120 (494)
T CHL00060         93 PLSVPVGGATLGRIFNVLGEPVDNLGPV  120 (494)
T ss_pred             cceeecchhhcCCEEeecCcccCCCCCC
Confidence            9999999999999999999999998764

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=99.84  E-value=1.2e-20  Score=159.49  Aligned_cols=97  Identities=24%  Similarity=0.269  Sum_probs=88.1

Q ss_pred             eeEEEEEECCEEEEEcCCCCCcCcEE---EEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          28 YKTVSGVNGPLVILDEVKFPKYAEIV---QLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~~~iGe~~---~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      +|+|++|.|.++++.|+ .+++||+|   .|...++..+.+||++ |+++.+.++||+++.||+.| +.|.++++++++|
T Consensus         2 ~G~v~~v~g~~ie~~~~-~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G-~~V~~t~~~~~i~   79 (461)
T TIGR01039         2 KGKVVQVIGPVVDVEFE-QGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRG-LEVIDTGAPISVP   79 (461)
T ss_pred             ccEEEEEEeeEEEEEEC-CCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCC-CEEEeCCCceEEE
Confidence            69999999999999997 59999999   8843233248899999 99999999999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +|++|||||+|++|+|||+++++
T Consensus        80 vg~~lLGRViD~~G~pid~~~~~  102 (461)
T TIGR01039        80 VGKETLGRIFNVLGEPIDEKGPI  102 (461)
T ss_pred             cChhhcCCEEccCCcccCCCCCC
Confidence            99999999999999999998654

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

Probab=99.83  E-value=3.2e-20  Score=154.16  Aligned_cols=103  Identities=55%  Similarity=0.881  Sum_probs=98.1

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      ..+.|-+|++|.|+++.|++..++++||+++|..++|+...++|+.++.+.+++|+|+.|.|+...++.|+|+|++++++
T Consensus         3 ~~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~   82 (463)
T COG1156           3 MVKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP   82 (463)
T ss_pred             ccceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEe
Confidence            45679999999999999999999999999999999998899999999999999999999999999986799999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++++||||+||++|+|||++|.+
T Consensus        83 vs~dllGRifnG~G~PiDggp~i  105 (463)
T COG1156          83 VSEDLLGRIFNGSGKPIDGGPEI  105 (463)
T ss_pred             ecHHhhhhhhcCCCCcCCCCCcC
Confidence            99999999999999999999875

>PRK14698 V-type ATP synthase subunit A; Provisional

Probab=99.82  E-value=3.9e-20  Score=167.86  Aligned_cols=92  Identities=30%  Similarity=0.507  Sum_probs=85.9

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE  106 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~  106 (128)
                      .+|+|++|+|++|+++|+..+++||+|.|.  ++ .+.|||++|+++.+++|||+++.|+++| ++|+++|++++|++|+
T Consensus         3 ~~G~V~~V~G~lv~a~g~~~~~iGE~v~I~--~~-~l~gEVIg~~~d~a~iq~~e~t~Gl~~G-~~V~~tg~~l~V~lG~   78 (1017)
T PRK14698          3 AKGRIIRVTGPLVIADGMKGAKMYEVVRVG--EL-GLIGEIIRLEGDKAVIQVYEETAGLKPG-EPVEGTGSSLSVELGP   78 (1017)
T ss_pred             CceEEEEEEcCEEEEecCcCCCCCCEEEEC--CC-cEEEEEEEEeCCEEEEEECCCCCCCCCC-CEEEEcCCcceeecCH
Confidence            379999999999999998779999999994  33 3899999999999999999999999999 5999999999999999


Q ss_pred             CCccceecCCcccccC
Q psy5598         107 DMLGRVFNGSGKPIDK  122 (128)
Q Consensus       107 ~lLGRViD~lG~PlDg  122 (128)
                      +||||||||+|+||+.
T Consensus        79 ~LLGRV~DGlGrPL~~   94 (1017)
T PRK14698         79 GLLTSIYDGIQRPLEV   94 (1017)
T ss_pred             HHhhcccCCCCChHHH
Confidence            9999999999999973

>PTZ00185 ATPase alpha subunit; Provisional

Probab=99.81  E-value=2.8e-19  Score=152.91  Aligned_cols=97  Identities=19%  Similarity=0.344  Sum_probs=88.7

Q ss_pred             eeeeEEEEEECCEEEE---EcCCCCCcCcEEEEEeCCCceEEEEEEEEeCC-EEEEEEccCCCCcccCCcEEEEcCCeee
Q psy5598          26 ITYKTVSGVNGPLVIL---DEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGS-KAVVQVFEGTSGIDAKNTVCEFTGDILR  101 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v---~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~-~v~l~~~~~~~Gi~~G~~~V~~tg~~~~  101 (128)
                      .+.|+|.+|.|++..+   .|++++.+||++++..++++...|+|..++++ .+.+++|++++||+.|+ .|.+||++++
T Consensus        38 ~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~-~V~~tg~~~~  116 (574)
T PTZ00185         38 EMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQ-KVMATGKLLY  116 (574)
T ss_pred             eeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCC-EEEECCCccE
Confidence            3589999998879995   89999999999999754444468999999999 79999999999999995 9999999999


Q ss_pred             EeCCCCCccceecCCcccccCC
Q psy5598         102 TPVSEDMLGRVFNGSGKPIDKD  123 (128)
Q Consensus       102 Vpvg~~lLGRViD~lG~PlDg~  123 (128)
                      ||||++|||||+|++|+|||++
T Consensus       117 VpVG~~lLGRVvD~lG~PIDg~  138 (574)
T PTZ00185        117 IPVGAGVLGKVVNPLGHEVPVG  138 (574)
T ss_pred             EECCcccccCEECCCCcccCCC
Confidence            9999999999999999999987

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=99.80  E-value=2.5e-19  Score=151.14  Aligned_cols=95  Identities=20%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             eEEEEEECCEEEEEcCC-CCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598          29 KTVSGVNGPLVILDEVK-FPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE  106 (128)
Q Consensus        29 G~V~~I~G~~i~v~g~~-~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~  106 (128)
                      |+|++|.|+++++++.. .+.+++.+.+..  +..+.+||++ |+++.+.++||++++||+.| +.|.++|++++||||+
T Consensus         1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~--~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G-~~V~~tg~~~~VpVg~   77 (449)
T TIGR03305         1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR--EGEVVVEVLSQLDAHHVRGIALTPTQGLARG-MPVRDSGGPLKAPVGK   77 (449)
T ss_pred             CeEEEEEcCEEEEEeCCCCcchhheEEecC--CCcEEEeeeeEecCCeEEEEEccCcccCCCC-CEEEecCCceEEEcCh
Confidence            79999999999999853 499999988863  3458899998 99999999999999999999 5999999999999999


Q ss_pred             CCccceecCCcccccCCCCC
Q psy5598         107 DMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       107 ~lLGRViD~lG~PlDg~~~~  126 (128)
                      +|||||+|++|+|||+++++
T Consensus        78 ~lLGRVlD~~G~PiD~~~~~   97 (449)
T TIGR03305        78 PTLSRMFDVFGNTIDRREPP   97 (449)
T ss_pred             hhcCCEEccCccccCCCCCC
Confidence            99999999999999998764

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=99.78  E-value=1.7e-18  Score=145.25  Aligned_cols=115  Identities=23%  Similarity=0.320  Sum_probs=105.6

Q ss_pred             HHHHhHHHHhcccCCCC-ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQP-RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      ...+-+.++++.|.... ....|+|++|.+.++++.|+.++..||++++.  ++  +.|.+.+++++.+.+..+++...|
T Consensus         7 ei~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~--~~--v~G~alnle~d~VG~vi~g~~~~i   82 (504)
T COG0056           7 EISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFP--GG--VKGMALNLEEDSVGAVILGDYSDI   82 (504)
T ss_pred             HHHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchhhcCceEEec--CC--cEEEEEeccccceeEEEecCCccc
Confidence            46677888899998775 45789999999999999999999999999997  34  799999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCSD  127 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~~  127 (128)
                      +.|| .|..||+.++||||++|+|||+|++|+|+||+++++
T Consensus        83 ~eG~-~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~  122 (504)
T COG0056          83 KEGD-EVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPID  122 (504)
T ss_pred             cCCc-EEEeeCceEEEecchhhcceeecCCCCccCCCCCcc
Confidence            9995 999999999999999999999999999999998864

>KOG1351|consensus

Probab=99.72  E-value=2.4e-17  Score=133.87  Aligned_cols=115  Identities=77%  Similarity=1.146  Sum_probs=107.9

Q ss_pred             hHHHHhcccCCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCc
Q psy5598          12 NVLAVTRDYISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNT   91 (128)
Q Consensus        12 ~~~~~~~~~~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~   91 (128)
                      +..+..++|...+...|-+|..++|+++.......+++.|+|.+.-+||....|+|..++++++++++|+.|+||-...+
T Consensus         8 ~~~a~~~~~~~~prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t   87 (489)
T KOG1351|consen    8 HATAVIENYTTEPRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKT   87 (489)
T ss_pred             HHHHHHhccccCCceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccc
Confidence            55677899999999999999999999999998888999999999988888889999999999999999999999998878


Q ss_pred             EEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          92 VCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        92 ~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      .+.|||+.++.||++++||||||+.|+|||.+|++
T Consensus        88 ~~eftg~~lr~pvsedmlgrifngsgkpid~gp~v  122 (489)
T KOG1351|consen   88 TVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPV  122 (489)
T ss_pred             eEEEecccccccccHHHhhhhhcCCCCccCCCCCc
Confidence            99999999999999999999999999999998874

>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

Probab=99.70  E-value=4e-17  Score=138.99  Aligned_cols=91  Identities=24%  Similarity=0.498  Sum_probs=86.1

Q ss_pred             eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598          28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED  107 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~  107 (128)
                      .|+|.+|+|+++.++|..++.+.|+|.+.   ...+.|||+.+++|++.+|+|++|.||++|+ +|.+||+|++|.+||+
T Consensus         2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg---~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge-~V~~Tg~pLsvELGPG   77 (588)
T COG1155           2 MGKIIRISGPVVVAEGMEGAKMYDVVKVG---EMGLIGEIIRIEGNRATIQVYEDTAGIRPGE-KVENTGRPLSVELGPG   77 (588)
T ss_pred             CceEEEEECCEEEEecCcCCceEEEEEEc---CCceeEEEEEEeCCeEEEEEEeecCCCCCCC-eeecCCCceEEEeCcc
Confidence            69999999999999999999999999995   2348999999999999999999999999996 9999999999999999


Q ss_pred             CccceecCCcccccC
Q psy5598         108 MLGRVFNGSGKPIDK  122 (128)
Q Consensus       108 lLGRViD~lG~PlDg  122 (128)
                      ||+.|+||+.||||.
T Consensus        78 ll~~IyDGiQrPL~~   92 (588)
T COG1155          78 LLKSIYDGIQRPLDV   92 (588)
T ss_pred             HHhhhhhhccChHHH
Confidence            999999999999973

>KOG1352|consensus

Probab=99.52  E-value=2.5e-15  Score=125.56  Aligned_cols=93  Identities=26%  Similarity=0.484  Sum_probs=86.8

Q ss_pred             ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598          25 RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV  104 (128)
Q Consensus        25 ~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv  104 (128)
                      ...||+|.+++|+++.+.+...++++|+|++..   ..+.|||+.+++|.+.+|+|++|+|+..|| +|..||+|++|.+
T Consensus        18 es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh---~~LvGEiIrlegD~aTIQVYEeTsG~tVgD-pvlrTgkPLsvEL   93 (618)
T KOG1352|consen   18 ESEYGRVYSVSGPVVVAENMAGCAMYELVRVGH---DELVGEIIRLEGDMATIQVYEETSGLTVGD-PVLRTGKPLSVEL   93 (618)
T ss_pred             hhccceEEeccCceEehhcccchHHHHHHHcch---HhhhhheeEecCceeEEEEEeccCCcccCC-chhhcCCcceEee
Confidence            446999999999999999988899999999852   248999999999999999999999999996 9999999999999


Q ss_pred             CCCCccceecCCccccc
Q psy5598         105 SEDMLGRVFNGSGKPID  121 (128)
Q Consensus       105 g~~lLGRViD~lG~PlD  121 (128)
                      ||+++|.++|+..|||.
T Consensus        94 GPGimgsIfDGIQRPLk  110 (618)
T KOG1352|consen   94 GPGIMGSIFDGIQRPLK  110 (618)
T ss_pred             CcchhhhhhhhhhhhHH
Confidence            99999999999999985

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=99.48  E-value=8.5e-14  Score=115.56  Aligned_cols=98  Identities=22%  Similarity=0.282  Sum_probs=85.7

Q ss_pred             eeEEEEEECCEEEEEcCC---CCCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          28 YKTVSGVNGPLVILDEVK---FPKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~---~~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      .|+|++|.|+++.+++..   .+.+++.+++...+...+..||..+ .++.+....++.++|+.+| ..|..||+|++||
T Consensus         3 ~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg-~~v~dtg~pi~VP   81 (468)
T COG0055           3 KGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRG-LEVIDTGKPISVP   81 (468)
T ss_pred             CceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccC-cEEecCCCceEEe
Confidence            599999999999999862   3899999998753212478898865 6678889999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ||+..||||+|.+|+|||+.+|+
T Consensus        82 VG~~~lgri~nvlG~~iD~~~~~  104 (468)
T COG0055          82 VGKGTLGRIFNVLGEPIDEKGPI  104 (468)
T ss_pred             cchhhcccchhccCCcccccCCC
Confidence            99999999999999999997765

>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.32  E-value=1e-11  Score=79.34  Aligned_cols=66  Identities=33%  Similarity=0.472  Sum_probs=57.7

Q ss_pred             EEEEECCEEEEEcCCC--CCcCcEEEEEeCC-CceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcC
Q psy5598          31 VSGVNGPLVILDEVKF--PKYAEIVQLRLND-GSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTG   97 (128)
Q Consensus        31 V~~I~G~~i~v~g~~~--~~iGe~~~i~~~~-~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg   97 (128)
                      |++|.|+++++++...  +.+++.+.++..+ +....|||++|+++.+.+|+|++++||++| ++|++||
T Consensus         1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G-~~V~~tG   69 (69)
T PF02874_consen    1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRG-TEVRFTG   69 (69)
T ss_dssp             EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTT-CEEEEEE
T ss_pred             CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCC-CEEEcCc
Confidence            6899999999977665  7788888887443 456899999999999999999999999999 5999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....

>KOG1353|consensus

Probab=99.28  E-value=1.5e-12  Score=103.69  Aligned_cols=98  Identities=23%  Similarity=0.263  Sum_probs=90.9

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      ...+.|+|.+|.+++..+.|+.++.-+|++++.  +|  +.+.-..+..+.+.+..|++..-++.|+ .|..|+....||
T Consensus        17 ~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFs--sG--lKgmalnle~~~vg~v~~g~d~~ikeg~-~VkrTgaIvDVp   91 (340)
T KOG1353|consen   17 DLEETGRVLSIGDGIARVYGLTNVQAEEMVEFS--SG--LKGMALNLEGENVGVVVFGEDSLIKEGD-TVKRTAAISDVP   91 (340)
T ss_pred             chhhccceEEEcCceeeeecccccchHHHHhhh--cc--ccchhccccCCceEEEEEcCcceeccCc-eEEeeeeeeccC
Confidence            445689999999999999999999999999986  35  6788889999999999999999999996 999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |++.|||||.|++|+|+||++++
T Consensus        92 vg~~LlgrvvdAlGn~idgkG~i  114 (340)
T KOG1353|consen   92 PLKALLGRVGCALGEPIDGNGKI  114 (340)
T ss_pred             chHHHhhhhhhhhcCeecCCCCc
Confidence            99999999999999999999975

>KOG1350|consensus

Probab=99.23  E-value=7.9e-12  Score=102.75  Aligned_cols=100  Identities=21%  Similarity=0.234  Sum_probs=86.7

Q ss_pred             eeeeEEEEEECCEEEEEcCCC-CCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCeeeEe
Q psy5598          26 ITYKTVSGVNGPLVILDEVKF-PKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTP  103 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~-~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vp  103 (128)
                      ...|+|..+.|.++.+.+..+ +.+-...++...+. .+..||.++ .++.+....++.|+|+.+| .+|..+|.|.+||
T Consensus        50 ~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~-~lvlEV~qhlG~n~VR~iAMdgTEGLvRG-~~VlDtG~Pi~ip  127 (521)
T KOG1350|consen   50 KNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDT-RLVLEVAQHLGENTVRTIAMDGTEGLVRG-QKVLDTGYPISIP  127 (521)
T ss_pred             ccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCc-eeeeHHHHHhCcCeEEEEEecCchhhhcC-cccccCCCceeee
Confidence            357999999999999998764 77777778875443 477888866 5677889999999999999 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCSD  127 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~~  127 (128)
                      ||+..|||++|..|+|+|..+|++
T Consensus       128 VG~~tLGRI~NViGePiDerGpi~  151 (521)
T KOG1350|consen  128 VGPETLGRIMNVIGEPIDERGPIK  151 (521)
T ss_pred             cCHHHHhhHHHhcCCcccccCCcc
Confidence            999999999999999999998874

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.04  E-value=0.00034  Score=58.64  Aligned_cols=38  Identities=18%  Similarity=0.035  Sum_probs=33.8

Q ss_pred             CCCCcccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCC
Q psy5598          82 GTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKD  123 (128)
Q Consensus        82 ~~~Gi~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~  123 (128)
                      ...+|+.|| .|..++++   ++++.|||||+|++|+|+|+.
T Consensus        55 ~~~~l~~Gd-~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~   92 (380)
T PRK12608         55 RRFNLRTGD-VVEGVARP---RERYRVLVRVDSVNGTDPEKL   92 (380)
T ss_pred             HHhCCCCCC-EEEeccCC---CCChhheEEEeccCCcCchhc
Confidence            345899995 99999988   999999999999999998863

>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase

Probab=92.82  E-value=0.35  Score=31.50  Aligned_cols=46  Identities=24%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGS   73 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~   73 (128)
                      .+|..+. ....+.++....+++||.|.+...++..++|+|.++...
T Consensus         4 ViG~~s~-~~~~f~~~~~~~v~~GeyV~i~~~~~~~vlG~V~~i~~~   49 (91)
T PF09378_consen    4 VIGETSS-NEFEFIVEPSKDVRVGEYVVIEYDDGEKVLGMVTSISRG   49 (91)
T ss_dssp             --EEEEE-ETTEEEEEE-TT-BTTEEEEES----TTEEEEEEEEES-
T ss_pred             ccCceeE-eeEEEEEeCCCCCCcCeEEEEEEechhhhhhhhheeEEc
Confidence            3566666 888888887667999999999865456799999999875

In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
3vr6_D	465	Crystal Structure Of Amp-pnp Bound Enterococcus Hir		2e-22
3vr2_D	465	Crystal Structure Of Nucleotide-free A3b3 Complex F		8e-21
2rkw_A	469	Intermediate Position Of Atp On Its Trail To The Bi		1e-19
3tiv_A	460	Crystal Structure Of Subunit B Mutant N157a Of The		2e-19
3ssa_A	460	Crystal Structure Of Subunit B Mutant N157t Of The		2e-19
2c61_A	469	Crystal Structure Of The Non-Catalytic B Subunit Of		2e-19
3tgw_A	460	Crystal Structure Of Subunit B Mutant H156a Of The		2e-19
3a5c_D	478	Inter-Subunit Interaction And Quaternary Rearrangem		2e-17
3gqb_B	464	Crystal Structure Of The A3b3 Complex From V-atpase		3e-17
3se0_A	588	Structural Characterization Of The Subunit A Mutant		3e-05
3sdz_A	588	Structural Characterization Of The Subunit A Mutant		3e-05
1vdz_A	588	Crystal Structure Of A-Type Atpase Catalytic Subuni		3e-05
3m4y_A	588	Structural Characterization Of The Subunit A Mutant		3e-05
3qjy_A	588	Crystal Structure Of P-Loop G234a Mutant Of Subunit		3e-05
3qia_A	588	Crystal Structure Of P-Loop G237a Mutant Of Subunit		3e-05
3mfy_A	588	Structural Characterization Of The Subunit A Mutant		3e-05
3i4l_A	588	Structural Characterization For The Nucleotide Bind		3e-05
3nd8_A	588	Structural Characterization For The Nucleotide Bind		3e-05
3qg1_A	588	Crystal Structure Of P-Loop G239a Mutant Of Subunit		3e-05
3nd9_A	588	Structural Characterization For The Nucleotide Bind		3e-05
3ikj_A	588	Structural Characterization For The Nucleotide Bind		3e-05

>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 465

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/94 (51%), Positives = 68/94 (72%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           Y+T+  V GPL+ +++V   KY E++++R+ +G  R GQVLEV   KA+VQ+FEGTSGI+
Sbjct: 12  YRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGIN 71
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            KN+   F G  L+  VSEDM+GRVF+G G+P D
Sbjct: 72  LKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKD 105

>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 465

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 64/94 (68%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           Y+T+  V GPL  +++V   KY E++++R  +G  R GQVLEV   KA VQ+FEGTSGI+
Sbjct: 12  YRTIKEVVGPLXAVEKVSGVKYEELIEVRXQNGEIRRGQVLEVQEDKAXVQIFEGTSGIN 71
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            KN+   F G  L+  VSED +GRVF+G G+P D
Sbjct: 72  LKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKD 105

>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding Pocket Inside The Subunit B Mutant R416w Of The Energy Converter A1ao Atp Synthase Length = 469

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S    VVQVFEGT G+D
Sbjct: 14  YKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD 73
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            K+    FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 74  -KDCGVIFTGETLKLPASVDLLGRILSGSGEPRD 106

>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S    VVQVFEGT G+D
Sbjct: 5   YKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD 64
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            K+    FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 65  -KDCGVIFTGETLKLPASVDLLGRILSGSGEPRD 97

>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S    VVQVFEGT G+D
Sbjct: 5   YKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD 64
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            K+    FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 65  -KDCGVIFTGETLKLPASVDLLGRILSGSGEPRD 97

>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type Atpase From M. Mazei Go1 Length = 469

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S    VVQVFEGT G+D
Sbjct: 14  YKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD 73
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            K+    FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 74  -KDCGVIFTGETLKLPASVDLLGRILSGSGEPRD 106

>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S    VVQVFEGT G+D
Sbjct: 5   YKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD 64
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
            K+    FTG+ L+ P S D+LGR+ +GSG+P D
Sbjct: 65  -KDCGVIFTGETLKLPASVDLLGRILSGSGEPRD 97

>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 478

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 58/94 (61%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           Y  ++ ++GPL+ ++  K   Y  IV ++   G  R GQV+EVS   AV+QVFE T+G+D
Sbjct: 8   YTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLD 67
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
              T      D+ R  VS++MLGR FNG GKPID
Sbjct: 68  LATTSVSLVEDVARLGVSKEMLGRRFNGIGKPID 101

>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase Length = 464

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 58/94 (61%)
Query: 28  YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID 87
           Y  ++ ++GPL+ ++  K   Y  IV ++   G  R GQV+EVS   AV+QVFE T+G+D
Sbjct: 8   YTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLD 67
Query: 88  AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
              T      D+ R  VS++MLGR FNG GKPID
Sbjct: 68  LATTSVSLVEDVARLGVSKEMLGRRFNGIGKPID 101

>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A From Pyrococcus Horikoshii Ot3 Length = 588

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a Of The A-Atp Synthase Length = 588

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPGLLTSIYDGIQRPLE 93

>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A With Amp-Pnp Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Mutant S238a Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 34  VNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVC 93
           V GPLV+ D +K  K  E+V  R+ +     G+++ + G KAV+QV+E T+G+     V 
Sbjct: 10  VTGPLVVADGMKGAKMYEVV--RVGELGL-IGEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 94  EFTGDILRTPVSEDMLGRVFNGSGKPID 121
             TG  L   +   +L  +++G  +P++
Sbjct: 67  G-TGASLSVELGPRLLTSIYDGIQRPLE 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	3e-43
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	1e-41
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	1e-10
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	4e-08
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	4e-07
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	3e-05
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	4e-05
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	4e-05
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	4e-05
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	5e-05

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464

 Score =  146 bits (370), Expect = 3e-43
 Identities = 42/102 (41%), Positives = 60/102 (58%)

Query: 21  ISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVF 80
           +   +  Y  ++ ++GPL+ ++  K   Y  IV ++   G  R GQV+EVS   AV+QVF
Sbjct: 1   MDLLKKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVF 60

Query: 81  EGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
           E T+G+D   T      D+ R  VS++MLGR FNG GKPID 
Sbjct: 61  EETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDG 102

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469

 Score =  142 bits (360), Expect = 1e-41
 Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 16  VTRDYISQPRI-TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSK 74
           +   +   P +  YKT++ + GPL+ +++ +   Y EIV +++ DG+ R GQVL+ S   
Sbjct: 1   MKHHHHHHPMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADI 60

Query: 75  AVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
            VVQVFEGT G+D K+    FTG+ L+ P S D+LGR+ +GSG+P D 
Sbjct: 61  VVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDG 107

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 30  TVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAK 89
            +  V GPLV+       K A++ ++         G+++ + G KAV+QV+E T+G+   
Sbjct: 6   RIIRVTGPLVV---ADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPG 62

Query: 90  NTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
             V   TG  L   +   +L  +++G  +P++ 
Sbjct: 63  EPV-VGTGASLSVELGPRLLTSIYDGIQRPLEV 94

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 30  TVSGVNGPLVILDEVKFPKYAEIV---QLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI 86
            +  + GP VI   +   +  +I    +  L       G+++ + G  A VQV+E TSG+
Sbjct: 5   VIQKIAGPAVIAKGMLGARMYDISKVGEEGL------VGEIIRLDGDTAFVQVYEDTSGL 58

Query: 87  DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 122
                    TG  L   +   ML  +++G  +P+++
Sbjct: 59  -KVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLER 93

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 31  VSGVNGPLVILDEVKFPKYA--EIVQLRLNDGSYRA---GQVLEVSGSKAVVQVFEGTSG 85
           ++   G ++   E    +        +   DG        +V+  +G +  +   E   G
Sbjct: 13  LTRATGLVL---EATGLQLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEG 69

Query: 86  I------DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPID 121
           I       A+N   +      + P+   +LGRV +G GKP+D
Sbjct: 70  ILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLD 111

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG IL  PV   +LGRV N  G PID
Sbjct: 91  TGRILEVPVGRGLLGRVVNTLGAPID 116

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG I + PVSE  LGRV N   KPID
Sbjct: 92  TGRIAQIPVSEAYLGRVINALAKPID 117

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG I+  PV E +LGRV N  G+P+D
Sbjct: 91  TGRIMEVPVGEALLGRVVNPLGQPLD 116

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
           TG I+  PV E++LGRV +  G  ID
Sbjct: 91  TGAIVDVPVGEELLGRVVDALGNAID 116

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 96  TGDILRTPVSEDMLGRVFNGSGKPID 121
              I+  PV E++LGRV N  G+P+D
Sbjct: 104 LKRIIEVPVGEELLGRVVNPLGEPLD 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	99.91
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	99.91
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	99.91
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	99.9
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	99.9
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	99.9
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	99.9
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	99.9
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	99.86
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	99.86
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	99.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.85
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	99.85
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	99.83
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	99.82

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=99.91  E-value=2.8e-24  Score=180.51  Aligned_cols=101  Identities=43%  Similarity=0.653  Sum_probs=94.5

Q ss_pred             ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEe
Q psy5598          25 RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTP  103 (128)
Q Consensus        25 ~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vp  103 (128)
                      .++||+|++|.|+++++.|++++++||+|+|..+++..+.|||++|+++.+.++||+++.||+ .| ++|++||++++||
T Consensus         5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vp   83 (464)
T 3gqb_B            5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLAT-TSVSLVEDVARLG   83 (464)
T ss_dssp             CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSS-CEEEEEESSCEEE
T ss_pred             cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCCcEEE
Confidence            356999999999999999998899999999986556568999999999999999999999999 89 5999999999999


Q ss_pred             CCCCCccceecCCcccccCCCCC
Q psy5598         104 VSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       104 vg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ||++|||||||++|+|||+++++
T Consensus        84 vg~~lLGRV~d~lG~PiD~~~~i  106 (464)
T 3gqb_B           84 VSKEMLGRRFNGIGKPIDGLPPI  106 (464)
T ss_dssp             ECSTTTTEEEETTCCBCSSSCCC
T ss_pred             eChHhcCCEeccCCcccCCCccc
Confidence            99999999999999999999875

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=99.91  E-value=3.5e-24  Score=179.93  Aligned_cols=100  Identities=46%  Similarity=0.769  Sum_probs=93.4

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc-cCCcEEEEcCCeeeEeC
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID-AKNTVCEFTGDILRTPV  104 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~-~G~~~V~~tg~~~~Vpv  104 (128)
                      ++||+|++|.|++++++|++++++||+|+|..+++..+.|||++|+++.+.++||+++.||+ .| ++|.+||++++|||
T Consensus        10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g-~~V~~tg~~~~vpv   88 (465)
T 3vr4_D           10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKN-SSVRFLGHPLQLGV   88 (465)
T ss_dssp             -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTT-CEEEECSSCCEEEE
T ss_pred             ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCC-CEEEECCCcceeec
Confidence            46999999999999999998899999999986556568999999999999999999999999 89 59999999999999


Q ss_pred             CCCCccceecCCcccccCCCCC
Q psy5598         105 SEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       105 g~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |++|||||||++|+|||+++++
T Consensus        89 g~~lLGRV~d~lG~PiD~~~~i  110 (465)
T 3vr4_D           89 SEDMIGRVFDGLGRPKDNGPEI  110 (465)
T ss_dssp             CGGGTTEEEETTSCBCSCCCCC
T ss_pred             chhhccceeccCCcccCCCCCC
Confidence            9999999999999999999875

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=99.91  E-value=4.3e-24  Score=180.91  Aligned_cols=114  Identities=20%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             HHHHhHHHHhcccCCCC-ceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQP-RITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      .+.+.+++++++|.... .+.+|+|++|.|+++++.|++++++||+|++.  ++  ..|||++++++.+.+++|+++.||
T Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~--~~--~~g~v~~l~~d~v~~~~~~~~~gi   82 (513)
T 3oaa_A            7 EISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLP--GN--RYAIALNLERDSVGAVVMGPYADL   82 (513)
T ss_dssp             -----------------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEET--TT--EEEEEEEECSSCEEEEESSCCSSC
T ss_pred             HHHHHHHHHHHhcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEEC--CC--CEEEEEEeeCCEEEEEEeCCccCC
Confidence            34556777888887543 45699999999999999999889999999994  34  789999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      ++| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus        83 ~~G-~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i  121 (513)
T 3oaa_A           83 AEG-MKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL  121 (513)
T ss_dssp             CTT-CEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSC
T ss_pred             CCC-CEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCC
Confidence            999 599999999999999999999999999999999876

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=99.90  E-value=6.6e-24  Score=179.65  Aligned_cols=114  Identities=21%  Similarity=0.305  Sum_probs=89.9

Q ss_pred             HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      .+.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++.  ++  ..|+|++|+++.+.+++|+++.||
T Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi   82 (502)
T 2qe7_A            7 EISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFE--NG--VMGMAQNLEEDNVGVVILGPYTEI   82 (502)
T ss_dssp             --------------------CEEEEEEEETTEEEEECCTTCBTTEEEEET--TS--CEEEEEEEETTEEEEEECSCCSSC
T ss_pred             HHHHHHHHHHHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEEC--CC--CEEEEEEecCCeEEEEEecCccCC
Confidence            455667888888887654 3699999999999999999889999999995  34  469999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus        83 ~~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i  121 (502)
T 2qe7_A           83 REG-TQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI  121 (502)
T ss_dssp             CTT-CEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCC
T ss_pred             cCC-CEEEEeCCcceEEcccccceEEEccCCCCCCCCCCC
Confidence            999 599999999999999999999999999999999875

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=99.90  E-value=3.8e-24  Score=180.01  Aligned_cols=105  Identities=41%  Similarity=0.686  Sum_probs=71.4

Q ss_pred             CCCCceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598          21 ISQPRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL  100 (128)
Q Consensus        21 ~~~~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~  100 (128)
                      +.+..+.||+|++|.|++++++|+..+++||+|+|...++....|||++|+++.+.+++|+++.||++| ++|.+||+++
T Consensus         7 ~~~~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G-~~V~~tg~~l   85 (469)
T 2c61_A            7 HHPMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKD-CGVIFTGETL   85 (469)
T ss_dssp             ---------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC--------------CEEEBC
T ss_pred             CCcccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCC-CEEEEcCCCc
Confidence            445667899999999999999999789999999997544545789999999999999999999999999 5999999999


Q ss_pred             eEeCCCCCccceecCCcccccCCCCC
Q psy5598         101 RTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       101 ~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +||||++|||||||++|+|||+++++
T Consensus        86 ~vpvg~~lLGRV~d~lG~PiDg~~~i  111 (469)
T 2c61_A           86 KLPASVDLLGRILSGSGEPRDGGPRI  111 (469)
T ss_dssp             EEEECGGGTTCEEETTSCBSSSCCCC
T ss_pred             EEEccccceeeEEcccCCCCCCCCCC
Confidence            99999999999999999999998775

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=99.90  E-value=1.1e-23  Score=178.59  Aligned_cols=113  Identities=20%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             HHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc
Q psy5598           9 LRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID   87 (128)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~   87 (128)
                      +.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++.  ++  ..|+|++|+++.+.+++|+++.||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi~   83 (510)
T 2ck3_A            8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFS--SG--LKGMSLNLEPDNVGVVVFGNDKLIK   83 (510)
T ss_dssp             ----------------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEET--TS--CEEEEEEECSSCEEEEESSCGGGCC
T ss_pred             HHHHHHHHHHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEEC--CC--CeEEEEeccCCeEEEEEECCccccc
Confidence            44557788888877653 4699999999999999999889999999995  34  4699999999999999999999999


Q ss_pred             cCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          88 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        88 ~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      .| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus        84 ~G-~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i  121 (510)
T 2ck3_A           84 EG-DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI  121 (510)
T ss_dssp             TT-CEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred             CC-CEEEEeCCcceeecCccceeeEEccCCcCcCCCCCC
Confidence            99 599999999999999999999999999999999876

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=99.90  E-value=6.5e-24  Score=179.87  Aligned_cols=114  Identities=24%  Similarity=0.311  Sum_probs=90.7

Q ss_pred             HHHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCc
Q psy5598           8 ALRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGI   86 (128)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi   86 (128)
                      .+.+.+++++++|...+. +.+|+|++|.|+++++.|++++++||+|++.  ++  ..|+|++|+++.+.+++|+++.||
T Consensus         8 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~--~g--~~g~v~~l~~~~v~~~~~~~~~gi   83 (507)
T 1fx0_A            8 EISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFE--EG--TIGIALNLESNNVGVVLMGDGLMI   83 (507)
T ss_dssp             -----------------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEET--TC--CEEEEEEECSSEEEEEECSCGGGC
T ss_pred             HHHHHHHHHHHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEEC--CC--ceEEEEeccCCeEEEEEecCccCC
Confidence            455667888888877653 3699999999999999999889999999995  34  469999999999999999999999


Q ss_pred             ccCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          87 DAKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        87 ~~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +.| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus        84 ~~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i  122 (507)
T 1fx0_A           84 QEG-SSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI  122 (507)
T ss_dssp             CTT-CEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCC
T ss_pred             cCC-CEEEEeCCcceeecCccceeEEEccCCcCCCCCCCC
Confidence            999 599999999999999999999999999999999876

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=99.90  E-value=1.4e-23  Score=178.04  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             HHHhHHHHhcccCCCCc-eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcc
Q psy5598           9 LRENVLAVTRDYISQPR-ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGID   87 (128)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~   87 (128)
                      +.+.+++++++|...+. ..+|+|++|.|+++++.|++++++||+|++. .++  ..|+|++|+++.+.+++|+++.||+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~-~~g--~~g~v~~l~~~~v~~~~~~~~~gi~   96 (515)
T 2r9v_A           20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFV-ETG--VKGVAFNLEEDNVGIIILGEYKDIK   96 (515)
T ss_dssp             ---------CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEET-TTC--CEEEEEECCTTCEEEEEESCCTTCC
T ss_pred             HHHHHHHHHHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEe-cCC--eEEEEEEecCCeEEEEEecCccccc
Confidence            44557888999987754 3699999999999999999889999999995 234  4699999999999999999999999


Q ss_pred             cCCcEEEEcCCeeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          88 AKNTVCEFTGDILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        88 ~G~~~V~~tg~~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      .| ++|.+||++++||||++|||||+|++|+|||+++++
T Consensus        97 ~G-~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i  134 (515)
T 2r9v_A           97 EG-HTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI  134 (515)
T ss_dssp             TT-CEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCC
T ss_pred             CC-CEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCC
Confidence            99 599999999999999999999999999999999875

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=99.86  E-value=1.3e-21  Score=167.91  Aligned_cols=92  Identities=24%  Similarity=0.437  Sum_probs=87.1

Q ss_pred             eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598          28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED  107 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~  107 (128)
                      .|+|.+|.|++++++|+.++++||+|+|.   +..+.|||++|+++.+.+|+|+++.||++|+ +|++||++++||+|++
T Consensus        10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~-~V~~tG~~lsV~vG~~   85 (600)
T 3vr4_A           10 IGKIIKVSGPLVMAENMSEASIQDMCLVG---DLGVIGEIIEMRQDVASIQVYEETSGIGPGE-PVRSTGEALSVELGPG   85 (600)
T ss_dssp             CEEEEEEETTEEEEESCTTSCTTCEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEECSSSSEEEESTT
T ss_pred             ceEEEEEECcEEEEEcCCCCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEccCCCCCCCCC-EEEECCCCCEEEeCHH
Confidence            79999999999999999889999999993   2248999999999999999999999999995 9999999999999999


Q ss_pred             CccceecCCcccccCC
Q psy5598         108 MLGRVFNGSGKPIDKD  123 (128)
Q Consensus       108 lLGRViD~lG~PlDg~  123 (128)
                      |||||||++|+|||++
T Consensus        86 lLGrV~DglGrPlD~~  101 (600)
T 3vr4_A           86 IISQMFDGIQRPLDTF  101 (600)
T ss_dssp             CTTCEECTTCCBHHHH
T ss_pred             HHhhhhCcCCCccccc
Confidence            9999999999999986

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=99.86  E-value=1.2e-21  Score=167.57  Aligned_cols=92  Identities=24%  Similarity=0.414  Sum_probs=87.0

Q ss_pred             eeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCCC
Q psy5598          28 YKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSED  107 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~~  107 (128)
                      .|+|++|.|++++++|+.++++||+|+|.   +..+.|||++|+++.+.+|+|+++.||++|+ +|++||++++||+|++
T Consensus         3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~-~V~~tg~~l~V~vG~~   78 (578)
T 3gqb_A            3 QGVIQKIAGPAVIAKGMLGARMYDISKVG---EEGLVGEIIRLDGDTAFVQVYEDTSGLKVGE-PVVSTGLPLAVELGPG   78 (578)
T ss_dssp             EEEEEEEETTEEEEESCTTCCTTEEEEET---TTTEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEEEEEESEEEESTT
T ss_pred             eeEEEEEECCEEEEEcCCCCccCCEEEEC---CCcEEEEEEEEcCCcEEEEEcCCCCCCCCCC-EEEECCCCCEEEeCHH
Confidence            69999999999999999889999999993   2248999999999999999999999999995 9999999999999999


Q ss_pred             CccceecCCcccccCC
Q psy5598         108 MLGRVFNGSGKPIDKD  123 (128)
Q Consensus       108 lLGRViD~lG~PlDg~  123 (128)
                      |||||||++|+|||++
T Consensus        79 lLGrV~DglG~PlD~~   94 (578)
T 3gqb_A           79 MLNGIYDGIQRPLERI   94 (578)
T ss_dssp             CTTCEECTTSCBHHHH
T ss_pred             HhhhhhCcCCCccccc
Confidence            9999999999999987

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=99.85  E-value=7.4e-21  Score=160.19  Aligned_cols=98  Identities=23%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCC--Cc----eEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598          28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLND--GS----YRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGD   98 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~--~~----~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~   98 (128)
                      +|+|++|.|++++++|+.  .+++||+|.|...+  +.    ...+||++ +.++.+.+++|+++.||+.|+ +|+++|+
T Consensus         3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~-~V~~tg~   81 (473)
T 1sky_E            3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGM-EVIDTGA   81 (473)
T ss_dssp             EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTC-EEEEEEE
T ss_pred             ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCC-EEEEcCC
Confidence            799999999999999984  48999999997522  33    47899998 899999999999999999995 9999999


Q ss_pred             eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          99 ILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        99 ~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +++||||++|||||+|++|+|||+++++
T Consensus        82 ~~~vpvg~~llGrv~d~lG~piD~~g~i  109 (473)
T 1sky_E           82 PISVPVGQVTLGRVFNVLGEPIDLEGDI  109 (473)
T ss_dssp             ECEEECSGGGTTCEECTTSCBCSSSCCC
T ss_pred             cceeeccccceeeEEeecCCccCccccc
Confidence            9999999999999999999999998775

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.85  E-value=4e-21  Score=159.96  Aligned_cols=101  Identities=19%  Similarity=0.278  Sum_probs=89.5

Q ss_pred             CceeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCc---eEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCC--
Q psy5598          24 PRITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGS---YRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGD--   98 (128)
Q Consensus        24 ~~~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~---~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~--   98 (128)
                      +.+.+|+|++|.|++++++|+ .+++||+|+|...++.   ...|||++|+++.+.++||+++.||++| +.|.++|+  
T Consensus         6 ~~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g-~~v~~~~~~~   83 (438)
T 2dpy_A            6 AVRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPG-ARVYARNGHG   83 (438)
T ss_dssp             -CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTT-EEEEEC----
T ss_pred             ccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCC-CEEEECCCcc
Confidence            556689999999999999998 7999999999864444   5899999999999999999999999999 59999999  


Q ss_pred             -----eeeEeCCCCCccceecCCcccccCCCCC
Q psy5598          99 -----ILRTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus        99 -----~~~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                           ++++|+|++|||||+|++|+|+|+++++
T Consensus        84 ~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~  116 (438)
T 2dpy_A           84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAP  116 (438)
T ss_dssp             ------CEEECSGGGTTEEECTTCCBSSSSCCC
T ss_pred             ccccccEEEEcchhhhhhhhhccCCccCCCCCc
Confidence                 9999999999999999999999997654

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=99.85  E-value=1.3e-22  Score=173.78  Aligned_cols=95  Identities=27%  Similarity=0.424  Sum_probs=35.2

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeCCC
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSE  106 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpvg~  106 (128)
                      .+|+|.+|.|++++++|+.++++||+|+|..   ..+.|||++|++|.+.+|+|+++.||++|+ +|.+||++++|++|+
T Consensus         3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~---~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~-~V~~tg~~lsV~vG~   78 (588)
T 3mfy_A            3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGE---LGLIGEIIRLEGDKAVIQVYEETAGVRPGE-PVVGTGASLSVELGP   78 (588)
T ss_dssp             -------------------------------------------------------------CCC-CCSSSSSCCEEEEST
T ss_pred             ceeEEEEEECCEEEEEcCCCCccCCEEEEcC---CceEEEEEEecCCeEEEEEccCCCCCCCCC-EEEEcCCCCEEEeCH
Confidence            4799999999999999998899999999952   248999999999999999999999999995 999999999999999


Q ss_pred             CCccceecCCcccccCCCC
Q psy5598         107 DMLGRVFNGSGKPIDKDCC  125 (128)
Q Consensus       107 ~lLGRViD~lG~PlDg~~~  125 (128)
                      +|||||+|++|+|||++++
T Consensus        79 gLLGrV~DglgrPLd~~~~   97 (588)
T 3mfy_A           79 RLLTSIYDGIQRPLEVIRE   97 (588)
T ss_dssp             TCTTCEEETTCCSSSSCCC
T ss_pred             HHHhhccCCCCCcccCccc
Confidence            9999999999999999854

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=99.83  E-value=3.1e-20  Score=157.14  Aligned_cols=98  Identities=21%  Similarity=0.324  Sum_probs=88.4

Q ss_pred             eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCC--Cc--eEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCee
Q psy5598          28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLND--GS--YRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDIL  100 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~--~~--~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~  100 (128)
                      +|+|++|.|++++++|+.  .+.+|+.|+|...+  +.  .+.+||++ +.++.+.+++|++++||++| ++|.+||+++
T Consensus        20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~   98 (498)
T 1fx0_B           20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRG-MEVIDTGAPL   98 (498)
T ss_dssp             CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTT-CEEEECSSSC
T ss_pred             CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCC-CEEEecCCcc
Confidence            699999999999999984  38999999996423  33  47899999 88999999999999999999 5999999999


Q ss_pred             eEeCCCCCccceecCCcccccCCCCC
Q psy5598         101 RTPVSEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       101 ~Vpvg~~lLGRViD~lG~PlDg~~~~  126 (128)
                      +||||++|||||+|++|+|||+++++
T Consensus        99 ~vpvG~~lLGRV~d~lG~PiD~~~~i  124 (498)
T 1fx0_B           99 SVPVGGPTLGRIFNVLGEPVDNLRPV  124 (498)
T ss_dssp             EEEESSTTTTCEECTTSCBCSSSSCC
T ss_pred             eEecCccceeeEEcccccCCCCcCCc
Confidence            99999999999999999999998775

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=99.82  E-value=6.8e-20  Score=154.56  Aligned_cols=98  Identities=22%  Similarity=0.290  Sum_probs=88.7

Q ss_pred             eeeEEEEEECCEEEEEcC-CCCCcCcEEEEEeCCCceEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCCeeeEeC
Q psy5598          27 TYKTVSGVNGPLVILDEV-KFPKYAEIVQLRLNDGSYRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPV  104 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~-~~~~iGe~~~i~~~~~~~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~~~Vpv  104 (128)
                      .+|+|++|.|++++++|+ ..+.+++.|.|... +....+||++ +.++.+.+++|+++.||++| ++|++||++++|||
T Consensus        13 ~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~-~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G-~~V~~tg~~~~vpv   90 (482)
T 2ck3_D           13 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGR-ETRLVLEVAQHLGESTVRTIAMDGTEGLVRG-QKVLDSGAPIRIPV   90 (482)
T ss_dssp             CEEEEEEEETTEEEEEESSCCCCTTCEEEESSC-SSCCEEEEEEEEETTEEEEEESSCCTTCBTT-CEEEECSSSCEEEC
T ss_pred             cceEEEEEEccEEEEEecCccCcccceEEEeeC-CCcEEEEEeEEecCCeEEEEeccCccCCCCC-CEEEEcCCcceeec
Confidence            489999999999999996 35899999998532 3357899999 89999999999999999999 59999999999999


Q ss_pred             CCCCccceecCCcccccCCCCC
Q psy5598         105 SEDMLGRVFNGSGKPIDKDCCS  126 (128)
Q Consensus       105 g~~lLGRViD~lG~PlDg~~~~  126 (128)
                      |++|||||||++|+|||+++++
T Consensus        91 G~~lLGRV~d~lG~PiDg~~~~  112 (482)
T 2ck3_D           91 GPETLGRIMNVIGEPIDERGPI  112 (482)
T ss_dssp             SGGGBTCEECTTSCBCSSSCSC
T ss_pred             cccccCCEEcccCcCcCCcCCC
Confidence            9999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1fx0a3	276	c.37.1.11 (A:97-372) Central domain of alpha subun	2e-06
d2jdid3	276	c.37.1.11 (D:82-357) Central domain of beta subuni	2e-06
d2jdia3	285	c.37.1.11 (A:95-379) Central domain of alpha subun	7e-06

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 13/19 (68%), Positives = 13/19 (68%)

Query: 103 PVSEDMLGRVFNGSGKPID 121
           PVSE  LGRV N   KPID
Sbjct: 3   PVSEAYLGRVINALAKPID 21

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 100 LRTPVSEDMLGRVFNGSGKPID 121
           +R PV  + LGR+ N  G+PID
Sbjct: 1   IRIPVGPETLGRIMNVIGEPID 22

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 103 PVSEDMLGRVFNGSGKPID 121
           PV E++LGRV +  G  ID
Sbjct: 4   PVGEELLGRVVDALGNAID 22

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1skyb2	75	F1 ATP synthase alpha subunit, domain 1 {Bacillus	99.17
d2jdia2	71	F1 ATP synthase alpha subunit, domain 1 {Cow (Bos	99.13
d1fx0a2	72	F1 ATP synthase alpha subunit, domain 1 {Spinach (	99.04
d2jdid2	72	F1 ATP synthase beta subunit, domain 1 {Rat (Rattu	98.94
d1skye2	82	F1 ATP synthase beta subunit, domain 1 {Bacillus s	98.93
d1fx0b2	79	F1 ATP synthase beta subunit, domain 1 {Spinach (S	98.88

>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=99.17  E-value=1e-10  Score=74.66  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCe
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDI   99 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~   99 (128)
                      .+.|+|.+|.+++..+.|++++++||++++.  ++  ..|.|.+++++.+.+..|+++..|+.|| +|+.||+.
T Consensus         6 ~e~G~V~~V~DGIA~v~GL~~a~~gElv~F~--~g--~~GlvlnLe~d~VgvVllg~~~~i~~G~-~V~rTg~v   74 (75)
T d1skyb2           6 SDVGTVIQVGDGIARAHGLDNVMSGEAVEFA--NA--VMGMALNLEENNVGIVILGPYTGIKEGD-EVRRTGRI   74 (75)
T ss_dssp             GGEEEEEEEETTEEEEEECTTCCTTEEEEET--TS--CEEEEEEEETTEEEEEESSCCSSCCTTC-EEEEEEEE
T ss_pred             EEeEEEEEEcCcEEEEECCcccccCCeEEeC--CC--CEEEEEeccCcEEEEEEECCCCcccCCC-EEEecccc
Confidence            4689999999999999999999999999995  34  7999999999999999999999999995 99999864

>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=1.5e-10  Score=73.15  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             eeeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598          26 ITYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGD   98 (128)
Q Consensus        26 ~~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~   98 (128)
                      .+.|+|.+|.+++..+.|++++++||++++.  ++  ..|.|.+++++.+.+..|+++..|+.|+ +|+.||+
T Consensus         3 ~e~G~V~~VgDGIA~V~GL~~a~~~Elv~F~--~g--~~GlalnL~e~~VgvVllg~~~~i~eG~-~V~rTG~   70 (71)
T d2jdia2           3 EETGRVLSIGDGIARVHGLRNVQAEEMVEFS--SG--LKGMSLNLEPDNVGVVVFGNDKLIKEGD-IVKRTGA   70 (71)
T ss_dssp             TTEEEEEEEETTEEEEEECTTCBTTCEEEET--TS--CEEEEEEECSSCEEEEESSCGGGCCTTC-EEECCCC
T ss_pred             ceEEEEEEEcCcEEEEECCcccccCCEEEEC--CC--CEEEEEeecccEEEEEEECCCCccCCCC-EEEeccc
Confidence            3589999999999999999999999999995  34  7899999999999999999999999995 9999986

>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=99.04  E-value=2.7e-10  Score=72.10  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             eeeEEEEEECCEEEEEcCCCCCcCcEEEEEeCCCceEEEEEEEEeCCEEEEEEccCCCCcccCCcEEEEcCCe
Q psy5598          27 TYKTVSGVNGPLVILDEVKFPKYAEIVQLRLNDGSYRAGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDI   99 (128)
Q Consensus        27 ~~G~V~~I~G~~i~v~g~~~~~iGe~~~i~~~~~~~~~geVv~~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~   99 (128)
                      ..|+|.+|.+++..+.|++++++||++++.  ++  ..|.+..++++.+.+..|+++..|+.|| +|+.||+.
T Consensus         4 ~~G~V~~VgDGIa~V~GL~~~~~~Elv~F~--~g--~~G~alnLe~d~VgvVllg~~~~i~~G~-~V~rTG~v   71 (72)
T d1fx0a2           4 NTGTVLQVGDGIARIHGLDEVMAGELVEFE--EG--TIGIALNLESNNVGVVLMGDGLMIQEGS-SVKATGRI   71 (72)
T ss_dssp             TEEEECCCCSSEEEEEECTTCCTTCCEEET--TC--CEEEEEEECSSEEEEEECSCGGGCCTTC-EEECCCCC
T ss_pred             EEEEEEEecCcEEEEeCCcccccCCEEEeC--CC--CeEEEEeccCCEEEEEEECCCCccCCCC-EEEecccc
Confidence            479999999999999999999999999995  34  7899999999999999999999999995 99999964

>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=6.3e-09  Score=65.64  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             eeEEEEEECCEEEEEcCCC-CCcCcEEEEEeCCCceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCe
Q psy5598          28 YKTVSGVNGPLVILDEVKF-PKYAEIVQLRLNDGSYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDI   99 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~~-~~iGe~~~i~~~~~~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~   99 (128)
                      .|+|++|.|+++.+++... +.+++.+++... +..+..||.+. .++.+.+..+++|+||++| ++|..||.|
T Consensus         1 TG~VvqV~G~VVDV~F~~~lP~i~~aL~v~~~-~~~~vlEV~qhlg~~~VR~IAl~~TdGL~RG-~~V~~tG~P   72 (72)
T d2jdid2           1 TGRIVAVIGAVVDVQFDEGLPPILNALEVQGR-ETRLVLEVAQHLGESTVRTIAMDGTEGLVRG-QKVLDSGAP   72 (72)
T ss_dssp             EEEEEEEETTEEEEEESSCCCCTTCEEEESSC-SSCCEEEEEEEEETTEEEEEESSCCTTCBTT-CEEEECSSS
T ss_pred             CceEEEEECCEEEEECCCCCCchheEEEEeCC-CceEEEEEeeecCCCeEEEEEecCccCccCC-CEEEeCCCC
Confidence            4999999999999999653 899999888643 34588999965 7889999999999999999 599999975

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=98.93  E-value=9.6e-09  Score=66.31  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=61.0

Q ss_pred             eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCCCc------eEEEEEEE-EeCCEEEEEEccCCCCcccCCcEEEEcCC
Q psy5598          28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLNDGS------YRAGQVLE-VSGSKAVVQVFEGTSGIDAKNTVCEFTGD   98 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~~~------~~~geVv~-~~~~~v~l~~~~~~~Gi~~G~~~V~~tg~   98 (128)
                      .|+|++|.|+++.++|..  -+.|++.+++....+.      .+..||.. +.++.+.+..+++|+||.+| ++|..||.
T Consensus         3 ~G~VvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~~TdGL~RG-~~V~dTG~   81 (82)
T d1skye2           3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRG-MEVIDTGA   81 (82)
T ss_dssp             EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTT-CEEEEEEE
T ss_pred             CcEEEEEEcceEEEECCCCCCCCcceEEEEEecCCCcccccceEEEEehhhcCCCeEEEEEecCccCccCC-CEEEeCCC
Confidence            599999999999999975  3999999999764321      47899996 57889999999999999999 59999986


Q ss_pred             e
Q psy5598          99 I   99 (128)
Q Consensus        99 ~   99 (128)
                      |
T Consensus        82 P   82 (82)
T d1skye2          82 P   82 (82)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=98.88  E-value=7.6e-09  Score=66.37  Aligned_cols=71  Identities=14%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             eeEEEEEECCEEEEEcCC--CCCcCcEEEEEeCC--C--ceEEEEEEEE-eCCEEEEEEccCCCCcccCCcEEEEcCCe
Q psy5598          28 YKTVSGVNGPLVILDEVK--FPKYAEIVQLRLND--G--SYRAGQVLEV-SGSKAVVQVFEGTSGIDAKNTVCEFTGDI   99 (128)
Q Consensus        28 ~G~V~~I~G~~i~v~g~~--~~~iGe~~~i~~~~--~--~~~~geVv~~-~~~~v~l~~~~~~~Gi~~G~~~V~~tg~~   99 (128)
                      .|+|++|.|+++.++|.+  -+.|++.+++...+  +  ..+..||... .++.+.+..+++|+||++| ++|..||.|
T Consensus         2 ~G~IvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~sTdGL~RG-~~V~dtG~P   79 (79)
T d1fx0b2           2 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRG-MEVIDTGAP   79 (79)
T ss_dssp             CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTT-CEEEECSSS
T ss_pred             CcEEEEEEcceEEEECCCCCCCCcceeEEEeccCCCCCeeEEEEEEeEccCCCEEEEEEecCCcCccCC-CEEEeCCCC
Confidence            599999999999999864  38999999886432  1  2478999975 7788999999999999999 599999975