Psyllid ID: psy5736

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MTGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIKS
Secondary Structure (PSIPRED)
ccccccccccEEccccEEEccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcHHcccHHHHHHHHccccccccccccccEEEEEcccHHccccccccccEEEEEccEEEEEEccccccccEEEEccccccccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccEHHcHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccEEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHcEEEcccHHHccccccHHHccccHcccccccHHHcccEcccccccccccccEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEccHHHHHccc
Coil and Loop (DISEMBL)
MTGLFLKEgiwdhitgsrliswrpdrgswarnsARCTALTLLNehddsllltgyddgslsvYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKtkhhfpnakinyvgvgiyptvslfnhdcypavtryfngKNIIVkalrplkpkevvaENYGLVFSRKHLIDRQKVLSARYWFEckcracvenwplmeslekypirircsndncgQIIATVKKLEPSAKKVEkkcescnstSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSdqihelvvppyklASLAHEALRNCWslagnkwvipenysqiks
Flexible Loop (DISEMBL)
mtglflkegiwdhitgsrliswrpdrgswARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVkalrplkpkEVVAENYglvfsrkhlidRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKklepsakkvekkcescnstsdlteiKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSlagnkwvipenysqiks
Low Complexity Region (SEG)
MTGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIKS
Disordered region (IsUnstruct)
***LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKL**********************IKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPEN******
Disordered Region (DISOPRED)
**GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQI**
Disordered Region (DISEMBL)
MTGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKL******************DLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIKS
Disordered Region (DISPRO)
*TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q8BTK5	799	SET and MYND domain-conta	yes	N/A	0.398	0.172	0.3	2e-11
Q9CWR2	428	Histone-lysine N-methyltr	no	N/A	0.283	0.228	0.32	1e-09
Q9H7B4	428	Histone-lysine N-methyltr	no	N/A	0.283	0.228	0.32	2e-09
Q8IYR2	804	SET and MYND domain-conta	no	N/A	0.393	0.169	0.264	9e-09
Q5R5X9	804	SET and MYND domain-conta	no	N/A	0.401	0.172	0.277	2e-08
Q557F7	386	SET and MYND domain-conta	yes	N/A	0.369	0.331	0.262	3e-08
Q5RGL7	434	N-lysine methyltransferas	yes	N/A	0.346	0.276	0.263	9e-08
Q7XJS0	480	Histone-lysine N-methyltr	yes	N/A	0.713	0.514	0.223	2e-07
E1C5V0	436	N-lysine methyltransferas	no	N/A	0.277	0.220	0.314	3e-07
P34318	465	SET domain-containing pro	no	N/A	0.378	0.281	0.251	9e-07

>sp|Q8BTK5|SMYD4_MOUSE SET and MYND domain-containing protein 4 OS=Mus musculus GN=Smyd4 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 75  SFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHH--FPNA 132
           S QA T  S   K+++  L  D  +    +L+ +  LQ NA  +        +     N+
Sbjct: 459 SVQAQTLKSPKLKAVTPGLCADLTVWGAAMLRHMLQLQCNAQAITSICHTGSNESIITNS 518

Query: 133 KINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHL 192
           +   +  GI+P VSL NH C P  +  F G    V+A + +   + +   YG   SR  +
Sbjct: 519 RQIRLATGIFPVVSLLNHSCRPNTSVSFTGTVATVRAAQRIAKGQEILHCYGPHESRMGV 578

Query: 193 IDRQKVLSARYWFECKCRAC 212
            +RQ+ LS++Y+F+C+C AC
Sbjct: 579 AERQQRLSSQYFFDCRCGAC 598

Mus musculus (taxid: 10090)

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVRE 228

Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 229 IEAGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCIRC 266

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 228

Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 229 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 266

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8IYR2|SMYD4_HUMAN SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3

 Score = 61.6 bits (148), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 73  VTSFQALTDTSFVNKS-----LSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKH 127
             S QA+     VN S     ++  L  D  +    +L+ +  LQ NA    + +   +H
Sbjct: 456 AASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNA----QAMTTIQH 511

Query: 128 HFPNAKINY------VGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAE 181
             P   I        +  GI+P +SL NH C P  +  F      ++A + ++  + +  
Sbjct: 512 TGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILH 571

Query: 182 NYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
            YG   SR  + +RQ+ L ++Y+F+C C AC
Sbjct: 572 CYGPHKSRMGVAERQQKLRSQYFFDCACPAC 602

Homo sapiens (taxid: 9606)

>sp|Q5R5X9|SMYD4_PONAB SET and MYND domain-containing protein 4 OS=Pongo abelii GN=SMYD4 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 73  VTSFQALTDTSFVNKS-----LSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKH 127
             SFQA+     VN S     ++  L  D  +    +L+ +  LQ NA +   T+  T  
Sbjct: 456 AASFQAIPTERSVNSSQLQAAVTPELCPDVTIWGVAMLRHMLQLQCNA-QAMTTIQHTGS 514

Query: 128 H---FPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYG 184
                 +++   +  GI+P VSL NH C P  +  F      ++A + ++  + +   YG
Sbjct: 515 KGSIVTDSRQVRLATGIFPVVSLLNHSCSPNTSMSFISTVATIQASQRIRKGQEILHCYG 574

Query: 185 LVFSRKHLIDRQKVLSARYWFECKCRAC 212
              SR  + +RQ+ L ++Y+F+C C AC
Sbjct: 575 PHKSRMGVAERQQELRSQYFFDCACPAC 602

Pongo abelii (taxid: 9601)

>sp|Q557F7|Y3589_DICDI SET and MYND domain-containing protein DDB_G0273589 OS=Dictyostelium discoideum GN=DDB_G0273589 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 137 VGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQ 196
           +GV + P+ S FNH C P  T   +G N+  K+L P+K  + +  +Y  +   + + DR+
Sbjct: 247 IGVAVSPSSSYFNHSCIPNCTDVRDGSNMTFKSLYPIKKGDQLTISY--IELDQPIQDRK 304

Query: 197 KVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEP------SA 250
             L   Y+F+C C  C  +   ++S++ +  +  CS   C  +  + K + P      S 
Sbjct: 305 DELKYGYYFDCICPRCNGDSNSIDSMDNWISKFYCSQKKCTGLYYS-KPMIPILNTLTSN 363

Query: 251 KKVEKKCESCNSTSDLT 267
            +++  C +CN+ + +T
Sbjct: 364 HEIQLSCSNCNNINIVT 380

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RGL7|SMY2B_DANRE N-lysine methyltransferase SMYD2-B OS=Danio rerio GN=smyd2b PE=2 SV=2

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 13/133 (9%)

Query: 111 LQFNAHEVYETLFKTKH----HFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNII 166
           L F  H+   TLF   H       + +++ +G+ I+P ++L NH C P V   + G N  
Sbjct: 165 LDFPDHQALLTLFSQVHCNGFTVEDEELSNLGLAIFPDIALLNHSCSPNVIVTYRGINAE 224

Query: 167 VKALRPLKPKEVVAENY-GLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKY 225
           V+A++ + P + +  +Y  L++      DR + L   Y+F C C+ C       +S++  
Sbjct: 225 VRAVKDISPGQEIYTSYIDLLYPTA---DRLERLRDMYYFSCDCKECT-----TKSMDVV 276

Query: 226 PIRIRCSNDNCGQ 238
            + +R  +D  G+
Sbjct: 277 KMSVRKRSDEIGE 289

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 112/264 (42%), Gaps = 17/264 (6%)

Query: 25  DRGSWARNSARCTALTLLNEHDDSLLL-TGYDDGSLSVYRNYASHEHRLVTSFQALTDTS 83
            +  W  +   C ALT L +     +  T      L + RN  + +   +T+    +   
Sbjct: 82  QKSEWKLHRDECKALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVE 141

Query: 84  FVNKSLSTVLNEDEALIAQILLKSLQVLQF---NAHEVYETLFK---TKHHFPNAKINYV 137
            +   +S +  +   L AQ+      +LQF   +  E+ E   K     H   ++++   
Sbjct: 142 ALVSHMSEIDEKQMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQ 201

Query: 138 GVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQK 197
           G+G++P VS+ NH C P     F  +  +V+A+  +     +  +Y  + +    + RQK
Sbjct: 202 GIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITISY--IETAGSTLTRQK 259

Query: 198 VLSARYWFECKCRACVENWPLMESLEKYPI--RIRCSNDNCGQIIATVKKLEPSAKK-VE 254
            L  +Y F C+C  C  N+     +E+  I    RC+N+ C   +      +P  K  V 
Sbjct: 260 SLKEQYLFHCQCARC-SNFGKPHDIEESAILEGYRCANEKCTGFLLR----DPEEKGFVC 314

Query: 255 KKCESCNSTSDLTEIKTKLSELNE 278
           +KC    S  ++ ++ + L  ++E
Sbjct: 315 QKCLLLRSKEEVKKLASDLKTVSE 338

Histone methyltransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
           + +++++G  I+P V+L NH C P V   + G    V+A++ ++P E V  +Y  L++  
Sbjct: 191 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPT 250

Query: 190 KHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSND 234
           +   DR   L   Y+F C CR C      M+  +K  ++IR  ND
Sbjct: 251 E---DRNDRLRDSYFFTCDCRECT-----MKEKDKEKLKIRKLND 287

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|P34318|SET3_CAEEL SET domain-containing protein 3 OS=Caenorhabditis elegans GN=set-3 PE=4 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 12/143 (8%)

Query: 114 NAHEVY--ETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALR 171
           NAH +Y  E +   + + P A       G++P  S+FNH C P ++ +F  +N  +   +
Sbjct: 200 NAHTIYSIEQIESQEDNLPMA------TGLFPISSIFNHSCTPNISGFF-VRNTFIFVSQ 252

Query: 172 PLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC--VENWPLMESLEKYPIRI 229
            ++ +E + ++YG+ + +     R   L++   F C C +C  +++  ++E  +KYP  I
Sbjct: 253 GVRAREELLDSYGVTYHQHTFEQRTNFLASVSGFICHCESCFKMKSLKVLEKPKKYPETI 312

Query: 230 RCSNDNCGQIIATVKKLEPSAKK 252
             +N +C   I +  +  P   K
Sbjct: 313 -ATNASCFTDITSYTENIPRGSK 334

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
383849683	686	PREDICTED: SET and MYND domain-containin	0.696	0.351	0.412	8e-52
242016107	697	set and mynd domain-containing protein,	0.702	0.348	0.387	3e-51
357603437	734	putative set and mynd domain-containing	0.789	0.371	0.376	1e-50
189240077	637	PREDICTED: similar to conserved hypothet	0.838	0.455	0.348	1e-50
380014448	661	PREDICTED: SET and MYND domain-containin	0.739	0.387	0.408	3e-49
328776415	714	PREDICTED: SET and MYND domain-containin	0.739	0.358	0.400	8e-48
332025390	401	SET and MYND domain-containing protein 4	0.676	0.583	0.395	2e-47
340723180	718	PREDICTED: SET and MYND domain-containin	0.684	0.330	0.409	4e-47
307209280	447	SET and MYND domain-containing protein 4	0.771	0.597	0.369	4e-47
307183932	421	SET and MYND domain-containing protein 4	0.693	0.570	0.401	5e-47

>gi|383849683|ref|XP_003700474.1| PREDICTED: SET and MYND domain-containing protein 4-like [Megachile rotundata]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/245 (41%), Positives = 145/245 (59%), Gaps = 4/245 (1%)

Query: 94  NEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCY 153
           NE E  +A +L + LQ+LQFNAHEV+ET   T+H F  +K  Y+GV +YPTV+ FNHDCY
Sbjct: 442 NEREIAVAALLSRHLQLLQFNAHEVFETRHGTEHRFRGSKPVYLGVAVYPTVARFNHDCY 501

Query: 154 PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACV 213
           PAVTRYF G++I+V+A+R L+P +VVAENYG +F++  L  R+  L+ RYWF C+C AC 
Sbjct: 502 PAVTRYFVGRSIVVRAIRRLRPGDVVAENYGPIFTKIPLKKRRDTLAGRYWFRCECTACR 561

Query: 214 ENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKL 273
           E+WPL + L    +R RC  ++C ++    +  +PS   V   C  C    DL      +
Sbjct: 562 EDWPLFDGLTNDLVRFRCPTESCEKLHG--QPADPSTAVV--LCSGCRREVDLRGPLESV 617

Query: 274 SELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333
            E   ++ RG   M+      A+    + +D+ H + VPP++   LA  A   C +  GN
Sbjct: 618 RECERLYARGFAAMDEERPEAALREFLEGTDKFHRVAVPPHRDTHLAEIAASICMADQGN 677

Query: 334 KWVIP 338
            W  P
Sbjct: 678 VWSQP 682

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016107|ref|XP_002428677.1| set and mynd domain-containing protein, putative [Pediculus humanus corporis] gi|212513348|gb|EEB15939.1| set and mynd domain-containing protein, putative [Pediculus humanus corporis]

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 2/245 (0%)

Query: 93  LNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDC 152
            NEDE L A I+L  L++LQFNAHE+YET  +  +   ++K  ++ +G+YPTV+LFNH+C
Sbjct: 453 FNEDEILTASIILHHLELLQFNAHEIYETRVEELYKTEDSKTVFIAIGVYPTVALFNHEC 512

Query: 153 YPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
            P+VTRYF+GKNII+KA+RPL   +++++NYG  + +K L++R + L++RYWF C+C+AC
Sbjct: 513 SPSVTRYFSGKNIIIKAVRPLATNDILSDNYGPHYGKKTLLERTRELTSRYWFRCRCQAC 572

Query: 213 VENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTK 272
           +ENWPL++ +     +IRC++  C  +           K    KC  C+   D+  +K K
Sbjct: 573 IENWPLIQDINAEDFKIRCTSLGCQNVFNLQNNT--KKKNNNFKCWQCSKEIDMENVKKK 630

Query: 273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332
             + +++F + I+ M+      A+  L  F ++I  + V P +   L  EALR C++  G
Sbjct: 631 KLQADDLFTKSIDLMDDKKCINAIPFLISFLNKIFNMAVEPCREIFLGQEALRTCYAQTG 690

Query: 333 NKWVI 337
           N W++
Sbjct: 691 NIWIL 695

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603437|gb|EHJ63766.1| putative set and mynd domain-containing protein [Danaus plexippus]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 14/287 (4%)

Query: 60  SVYRNYASHEHRLVTSF---QALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAH 116
           S  R  A +  R++      + L  T F        +   E  I ++++++LQ+LQFNAH
Sbjct: 454 SRQRKGADYLKRIIMGMFLTECLKKTDFFKNCEKENITRAEISICELIVRNLQLLQFNAH 513

Query: 117 EVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPK 176
           E+YET+ + +H F  +K  Y+GVGIYPT +LFNH+CYPAV RYF GK +  +A+RPL+P 
Sbjct: 514 EIYETV-RGEHQFRGSKPVYIGVGIYPTGALFNHECYPAVARYFYGKKMSYRAIRPLEPG 572

Query: 177 EVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWP-LMESLEKYPIRIRCSNDN 235
           E+ AENYG  F  + L +RQ++L+ RYWF C+C ACVE+WP L E+  K PI +RC N  
Sbjct: 573 EIAAENYGPHFLMRTLKERQRMLTCRYWFRCQCIACVEDWPTLKETESKSPIYLRCLNKK 632

Query: 236 CGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELN---EMFYRGIEQMNTSCF 292
           C   I  +K           KC  C+   + T +K  L+E++     +  G + M     
Sbjct: 633 CHGKIKVIK------NPTNLKCPKCSMAFNKTSLKECLNEVDIVLSQYEAGAKLMEQQRP 686

Query: 293 REAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPE 339
           ++A+E  +K  D  ++  +PP++   +A E+LR+C++  GN  ++ E
Sbjct: 687 QDAIEIFSKAIDCFYDFAMPPHRETHIAQESLRSCYATFGNTHILKE 733

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240077|ref|XP_971167.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 171/310 (55%), Gaps = 20/310 (6%)

Query: 38  ALTLLNEHDDSLLLTGYDDGSLSVYRNYASHEHR----------LVTSF--QALTDTSFV 85
           AL ++ +   +  L  YD  + +   N  ++E +          L+ +F  + L  + + 
Sbjct: 332 ALRIITQQSLTQTLEIYDKKNTNALYNLCTNESKRQNSDFLQRSLMAAFLLRCLQKSGYF 391

Query: 86  NKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTV 145
            ++ + V  + E  + ++LL  LQ+LQFNAHE+YETL+   H   +AK+  +GV +YPTV
Sbjct: 392 GENGTVVPTQTEHKVGEMLLHYLQILQFNAHEIYETLYSEDHSLKSAKMINIGVAVYPTV 451

Query: 146 SLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWF 205
           +LFNH+CYP+VTRYF GK I++ ++RPL P   ++ENYG +F+R  L +RQ+ L  RYWF
Sbjct: 452 ALFNHECYPSVTRYFVGKTIVIASIRPLTPNTPISENYGPIFTRIKLAERQRTLLGRYWF 511

Query: 206 ECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSD 265
            C+C+AC+E+WPL+ +   Y  R++C    C  +        P + ++E KC  C +   
Sbjct: 512 NCQCQACLEDWPLLTNESNYVKRLKCPMVKCSNLF-------PLSPEIE-KCPKCQTKIL 563

Query: 266 LTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALR 325
           L E+  KL      F  GI+ + +    EA+  L +  D  H +  PP      A EALR
Sbjct: 564 LKELIEKLDWCENQFKIGIDFVKSGKREEAIPVLRQALDTFHRVSAPPNGETHRAQEALR 623

Query: 326 NCWSLAGNKW 335
            C +  GN +
Sbjct: 624 MCLADQGNTF 633

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014448|ref|XP_003691244.1| PREDICTED: SET and MYND domain-containing protein 4-like [Apis florea]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 157/262 (59%), Gaps = 6/262 (2%)

Query: 76  FQALTDTSFVNKSLST--VLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAK 133
           F+ L    F +   S     N+ E  +A +LLK LQ+LQFNAHEV+ET    +H F  +K
Sbjct: 398 FKCLQKVGFFDDPSSNEETPNDREIAVASLLLKHLQLLQFNAHEVFETRLGMEHRFRGSK 457

Query: 134 INYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLI 193
             Y+GV IYPTV+ FNHDCYPAVTRYF G+ I+++A R L+P +VVAENYG +F++++L 
Sbjct: 458 SIYIGVAIYPTVARFNHDCYPAVTRYFLGRCIVIRATRSLRPGDVVAENYGPIFTKRNLE 517

Query: 194 DRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKV 253
           +R++ L+ RYWF C+C AC ENWP +E +    +R+RC    C  I    +    +A K 
Sbjct: 518 ERRRSLAGRYWFFCECNACRENWPCLEVMTNDDVRLRCPTKGCSNIHQRPR----NANKS 573

Query: 254 EKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPP 313
             +C SC    DL E   +L E   ++ RG E M     ++A+E+  + + + H++ +PP
Sbjct: 574 IFECSSCRRKIDLRESLDQLRECERLYARGFETMEKEQPKKALEAFFEATSKFHKIAMPP 633

Query: 314 YKLASLAHEALRNCWSLAGNKW 335
           +K   LA  A   C +  GN +
Sbjct: 634 HKDTHLAEIAASACMADEGNVY 655

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776415|ref|XP_003249162.1| PREDICTED: SET and MYND domain-containing protein 4-like [Apis mellifera]

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 159/262 (60%), Gaps = 6/262 (2%)

Query: 76  FQALTDTSFVNKSLST--VLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAK 133
           F+ L    F +   S     N+ E  +A +LLK LQ+LQFNAHEV+ET    +H F  +K
Sbjct: 451 FKCLQKVGFFDNPSSNEETPNDREIAVASLLLKHLQLLQFNAHEVFETRLGMEHRFRGSK 510

Query: 134 INYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLI 193
             Y+GV IYPTV+ FNHDCYPAVTRYF G+ I+++A+R L+P +VVAENYG +F++++L 
Sbjct: 511 PIYIGVAIYPTVARFNHDCYPAVTRYFLGRCIVIRAIRSLRPGDVVAENYGPIFTKRNLE 570

Query: 194 DRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKV 253
           +R++ L+ RYWF C+C AC ENWP +E +    +R+RC    C  I    ++   S+K +
Sbjct: 571 ERRRNLAGRYWFFCECNACRENWPCLEIMTNDDVRLRCPTKGCSNI---HQRPRNSSKSI 627

Query: 254 EKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPP 313
             +C SC    DL +    + E  +++ RG E M      +A+E+  + + + H++ +PP
Sbjct: 628 -FECSSCRRKIDLRKPLDHVRECEQLYARGFEAMEKEQPEKALEAFFEATSKFHKIAMPP 686

Query: 314 YKLASLAHEALRNCWSLAGNKW 335
           +K   LA  A   C +  GN +
Sbjct: 687 HKDTHLAEIAASACMADEGNVY 708

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025390|gb|EGI65557.1| SET and MYND domain-containing protein 4 [Acromyrmex echinatior]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 147/240 (61%), Gaps = 6/240 (2%)

Query: 96  DEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPA 155
           +E  +A +LL++LQ+LQFNAHE +ET    +H F  ++  Y+GV IYP+V+ FNHDCYPA
Sbjct: 163 EEVTVAALLLRNLQLLQFNAHEFFETRMSAEHRFHGSRPVYLGVAIYPSVARFNHDCYPA 222

Query: 156 VTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVEN 215
           VTRYF G++I+++A+R L P +V+AENYG +F+++ L +RQ+ L+ RYWF+C C+AC E+
Sbjct: 223 VTRYFIGRHIVIRAIRGLGPGDVIAENYGPIFTKRTLAERQRTLTGRYWFQCTCKACQED 282

Query: 216 WPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSE 275
           WP  E+L    +++RC    CG +    ++ +P       KC  C     L +    L E
Sbjct: 283 WPCFENLTNDSVKLRCPTVGCGGLHLRSRQGKPI------KCPDCQKKICLEDRLACLRE 336

Query: 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW 335
              ++ RG+  M      EA+E+      + H++  PP++   LA  AL +C +  GN W
Sbjct: 337 CEALYERGLASMENERVDEAIETFCDALKRFHQVACPPHRDTHLAEIALSSCLADYGNTW 396

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723180|ref|XP_003399973.1| PREDICTED: SET and MYND domain-containing protein 4-like [Bombus terrestris]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 5/242 (2%)

Query: 94  NEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCY 153
           N+ E  +A +LLK LQ+LQFNAHEV+ET    +H F  ++  Y+GV IYPTV+ FNHDCY
Sbjct: 471 NDREIAVAGLLLKHLQLLQFNAHEVFETRLGNEHRFRGSRPLYIGVAIYPTVARFNHDCY 530

Query: 154 PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACV 213
           PAVTRYF G++I+++A+R L+P + VAENYG +F+++ L DR++ L+ARYWF C+C AC 
Sbjct: 531 PAVTRYFVGRSIVIRAIRSLRPGDTVAENYGPIFTKRSLEDRRRTLAARYWFRCECTACR 590

Query: 214 ENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKL 273
           E+WP  E+L    +R+RC  + C ++ +  +  +PS + +E  C SC    +L E   ++
Sbjct: 591 EDWPRFETLTNDMVRLRCPTEGCSKLHS--RPRDPS-RSIE--CSSCRRRINLRESLDRV 645

Query: 274 SELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333
            E   ++  G   M       A ++  + + + H + VPP+K   LA  A   C +  GN
Sbjct: 646 RECEHLYAEGFAAMEEEQPERASKAFFEAASKFHRVAVPPHKDTHLAEIAASACMADEGN 705

Query: 334 KW 335
            +
Sbjct: 706 VY 707

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209280|gb|EFN86371.1| SET and MYND domain-containing protein 4 [Harpegnathos saltator]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 161/276 (58%), Gaps = 9/276 (3%)

Query: 69  EHRLVTSF--QALTDTSFVNKSLST---VLNEDEALIAQILLKSLQVLQFNAHEVYETLF 123
           E  L+ +F  + L    F ++  +    V + +E  +A +LL++LQ+LQFNAHE +ET  
Sbjct: 167 ERSLMAAFLLKCLQRVGFFDRPAADDGRVPDAEEISVAGLLLRNLQLLQFNAHEFFETRL 226

Query: 124 KTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY 183
             +H F  ++  Y+GV IYPTV+ FNHDCYPAVTRYF G++I+++A R L+P +V+AENY
Sbjct: 227 SAQHRFRGSRPVYLGVAIYPTVARFNHDCYPAVTRYFVGRHIVIRATRGLRPGDVIAENY 286

Query: 184 GLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATV 243
           G +F+++ L +RQ+ L+ARYWF C C+AC E+WP  E+L      +RC    CG++ +  
Sbjct: 287 GPIFTKRSLAERQRTLAARYWFRCTCKACQEDWPRFENLTNDSASLRCPTAGCGRLHSRA 346

Query: 244 KKLEPSAKKVEK----KCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESL 299
            + +   ++       KC  C     L +    L E   ++ RG+  M      EA+E+L
Sbjct: 347 SQQQQQQQQQRPCKPIKCPGCQKKICLEDRLACLRECEALYTRGLASMEEEQVSEAIETL 406

Query: 300 TKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW 335
            +   + H +   P++   LA  AL +C + +GN W
Sbjct: 407 REALGRFHRVAGAPHRDTHLAEIALSSCLADSGNTW 442

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183932|gb|EFN70520.1| SET and MYND domain-containing protein 4 [Camponotus floridanus]

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 146/244 (59%), Gaps = 4/244 (1%)

Query: 92  VLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHD 151
           V   +E ++A +LL++LQ+LQFNAHE +ET     H F  ++  Y+GV IYPTV+ FNHD
Sbjct: 177 VPGAEEIIVAALLLRNLQLLQFNAHEFFETRLSAGHRFRGSRPVYLGVAIYPTVARFNHD 236

Query: 152 CYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRA 211
           CYPAVTRYF G++I+++A+R L+P +V+AENYG +F+++ L +RQ+ L+ RYWF C CRA
Sbjct: 237 CYPAVTRYFVGRHIVIRAIRGLRPGDVIAENYGPIFTKRTLAERQRTLAGRYWFRCSCRA 296

Query: 212 CVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKT 271
           C E+WP  E+L    +R+RC    C  + +  +  +   K +  KC +C     L +   
Sbjct: 297 CQEDWPRFETLTNDSVRLRCPTTGCNGLHS--RPQQRPDKPI--KCSACQKKVCLEDQLA 352

Query: 272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLA 331
            L E    + RG+  M      EA+ +L     + H +  PP++   LA  AL +C    
Sbjct: 353 CLQECETFYTRGLASMEDERVDEAIGTLCDALKRFHRVACPPHRDTHLAEIALSSCLIDY 412

Query: 332 GNKW 335
           GN W
Sbjct: 413 GNTW 416

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
FB|FBgn0036282	663	Smyd4 "SET and MYND domain pro	0.664	0.346	0.360	5e-39
FB|FBgn0033633	660	CG7759 [Drosophila melanogaste	0.745	0.390	0.324	4.8e-34
UNIPROTKB|E1C7E7	797	SMYD4 "SET and MYND domain-con	0.670	0.291	0.247	2.1e-11
TAIR|locus:2827831	480	SDG37 "SET domain group 37" [A	0.806	0.581	0.232	4.7e-10
UNIPROTKB|I3L5X6	189	SMYD3 "Uncharacterized protein	0.228	0.417	0.361	6.7e-10
UNIPROTKB|E2R4V0	794	SMYD4 "Uncharacterized protein	0.583	0.254	0.244	5e-09
UNIPROTKB|A8MXR1	148	SMYD3 "Histone-lysine N-methyl	0.210	0.493	0.363	6.5e-09
MGI|MGI:2442796	799	Smyd4 "SET and MYND domain con	0.725	0.314	0.219	8.5e-09
FB|FBgn0027495	573	CG8378 [Drosophila melanogaste	0.317	0.191	0.330	8.6e-09
UNIPROTKB|J9NYI0	806	SMYD4 "Uncharacterized protein	0.589	0.253	0.231	1.9e-08

FB|FBgn0036282 Smyd4 "SET and MYND domain protein 4" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 5.0e-39, P = 5.0e-39
 Identities = 85/236 (36%), Positives = 130/236 (55%)

Query:    97 EALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAV 156
             E  +A  LL  LQVLQ+NAH++Y+T    +H F  +K  Y+  G+Y T S FNH+C+P+ 
Sbjct:   426 ELQVATALLGLLQVLQYNAHQIYQTQVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPST 485

Query:   157 TRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENW 216
               +F GK +++ A RP +  E+VA NYG +F + +L +RQ+ L  RY F C C AC ENW
Sbjct:   486 ACHFVGKKLVLTATRPHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENW 545

Query:   217 PLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSEL 276
             PL++ L+K  +R  C++ NC  ++   K L   AK V  +C  C     L E   K+ ++
Sbjct:   546 PLLQKLDKQ-VRFWCTSANCSNLLKFPKDL---AKDV--RCPRCRKNISLKESVAKMIKI 599

Query:   277 NEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332
              E++      M      EA+E   +  D   ++   P+K   +A ++L  C S  G
Sbjct:   600 EELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKCLSDTG 655

GO:0007562 "eclosion" evidence=IMP

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=IDA

FB|FBgn0033633 CG7759 [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 4.8e-34, P = 4.8e-34
 Identities = 89/274 (32%), Positives = 147/274 (53%)

Query:    69 EHRLVTSFQALTDTSFVNKSLSTVLNEDE-ALIAQILLKSLQVLQFNAHEVYETLFKTKH 127
             +H L+  F  LT+         +    DE ++I  ++L+SLQ +QFN HEV E L K   
Sbjct:   397 QHVLMARF--LTNCLRAGGYFGSEPKPDEVSIICSLVLRSLQFIQFNTHEVAE-LHKFSS 453

Query:   128 HFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187
                   I ++G  IYPT++LFNH C P V RYF G  I + ++RP++    + ENYG ++
Sbjct:   454 SGREKSI-FIGGAIYPTLALFNHSCDPGVVRYFRGTTIHINSVRPIEAGLPINENYGPMY 512

Query:   188 SRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRC-SNDNCGQIIATVKKL 246
             ++    +RQ  L   YWFEC C AC++NWP  + L +  IR RC + +NC  +I    ++
Sbjct:   513 TQDERSERQARLKDLYWFECSCDACIDNWPKFDDLPRDVIRFRCDAPNNCSAVI----EV 568

Query:   247 EPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQI 306
              PS      KC +C   +++ +   K+ +  EM  R  +++  +   E  ++L KF D I
Sbjct:   569 PPSCNDFMVKCVTCGEITNILK-GLKVMQDTEMMTRTAKRLYET--GEYPKALAKFVDLI 625

Query:   307 ---HELVVPPYKLASLAHEALRNCWSLAGNKWVI 337
                +E++ PP+     + + L++C+   GN + +
Sbjct:   626 RIMYEVLAPPFPDFCESQQHLKDCFLNLGNVYTL 659

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

UNIPROTKB|E1C7E7 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
 Identities = 62/251 (24%), Positives = 112/251 (44%)

Query:    90 STVLNEDEALIAQILLKSLQVLQFNAHE--VYETLFKTKHHFPNAKINYVGVGIYPTVSL 147
             S  L+ +  ++A+ +L+ +  LQ NA    V + L        N K   +    +P +SL
Sbjct:   473 SDELSPELMIMAEAMLRHVLQLQCNAQAITVMQELESGDGAVVNKKPVRLATAFFPVLSL 532

Query:   148 FNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFEC 207
              NH C P ++  F+G    V+A +P+   + +   YG    R  + +RQ++LS +Y+FEC
Sbjct:   533 LNHSCSPNISVSFSGTAATVRASQPIPSGQEIFHCYGPHRCRMRVAERQQLLS-QYFFEC 591

Query:   208 KCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKC---ESCNSTS 264
             +C+AC++   L   +E   +R    N  C          + S +  E  C   E+C  + 
Sbjct:   592 RCQACLDE--LESDVESVSMR----NSFC------CPSCQASMQGEEMLCCSNEACAFSV 639

Query:   265 DLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEAL 324
                 +  +L +L +   + +E +  S   EA++ L K        + P + L     + L
Sbjct:   640 SRERLSQRLLDLQQQMEKALELLRDSKADEAIKMLLKCQIDARNFLSPEHLLMGELEDHL 699

Query:   325 RNCWSLAGNKW 335
                ++  G KW
Sbjct:   700 AQVYATLG-KW 709

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 71/305 (23%), Positives = 128/305 (41%)

Query:    26 RGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY--RNYASHEHRLVTSFQALTDTS 83
             +  W  +   C ALT L E +    +T      + +Y  RN  + +   +T+    +   
Sbjct:    83 KSEWKLHRDECKALTRL-EKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVE 141

Query:    84 FVNKSLSTVLNEDEALIAQIL-LKSLQVLQF---NAHEVYETLFK---TKHHFPNAKINY 136
              +   +S +  +   L AQ+  L +L +LQF   +  E+ E   K     H   ++++  
Sbjct:   142 ALVSHMSEIDEKQMLLYAQMANLVNL-ILQFPSVDLREIAENFSKFSCNAHSICDSELRP 200

Query:   137 VGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQ 196
              G+G++P VS+ NH C P     F  +  +V+A+  +     +  +Y  + +    + RQ
Sbjct:   201 QGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITISY--IETAGSTLTRQ 258

Query:   197 KVLSARYWFECKCRACVENWPLMESLEKYPIR--IRCSNDNCGQIIATVKKLEPSAKKVE 254
             K L  +Y F C+C  C  N+     +E+  I    RC+N+ C   +      +P  K   
Sbjct:   259 KSLKEQYLFHCQCARC-SNFGKPHDIEESAILEGYRCANEKCTGFLLR----DPEEKGFV 313

Query:   255 KKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPY 314
               C+ C       E+K   S+L  +     E+  TS   E  ++  +    I +L V  Y
Sbjct:   314 --CQKCLLLRSKEEVKKLASDLKTVS----EKAPTSPSAEDKQAAIELYKTIEKLQVKLY 367

Query:   315 KLASL 319
                S+
Sbjct:   368 HSFSI 372

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3L5X6 SMYD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 30/83 (36%), Positives = 52/83 (62%)

Query:   131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
             NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R ++  E +   Y  ++ + 
Sbjct:    17 NAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVRDIEAGEELTICYLDMLMTS 76

Query:   190 KHLIDRQKVLSARYWFECKCRAC 212
             +   +R+K L  +Y FEC C  C
Sbjct:    77 E---ERRKQLRDQYCFECDCFRC 96

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

UNIPROTKB|E2R4V0 SMYD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 52/213 (24%), Positives = 99/213 (46%)

Query:   104 LLKSLQVLQFNAHEVYETLFKT---KHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYF 160
             +LK +  LQ NA  +  T+ +T   +++  N++   +  GI+P VSL NH C P  +  F
Sbjct:   483 MLKHMLQLQCNAQAI-TTIQETGSKENNVCNSRQIRLATGIFPVVSLLNHSCSPNTSVSF 541

Query:   161 NGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLME 220
             +     ++A + +   + +   YG  +SR  + DRQ+ L ++Y+F+C C AC +      
Sbjct:   542 SSTVATIRASQQIGKGQEILHCYGPHYSRMGVADRQQKLRSQYFFDCGCPACQKEKHRAV 601

Query:   221 SLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMF 280
             +  ++     C N  CG ++     L   +    +     + TS L +++ ++    E+ 
Sbjct:   602 ARPRW--EAFCCNQ-CGALLQGGDILSCGSMSCTESVSRDHLTSQLQDLQQQVGIAQELL 658

Query:   281 YRG-IEQ---MNTSCFREAVESLTKFSDQIHEL 309
               G IEQ   +   C  +A   L+     + E+
Sbjct:   659 RSGKIEQAVQLLLECRHDAESFLSAEHSMVGEI 691

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A8MXR1 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 28/77 (36%), Positives = 48/77 (62%)

Query:   137 VGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSRKHLIDR 195
             VGVG+YP++SL NH C P  +  FNG +++++A+R ++  E +   Y  ++ + +   +R
Sbjct:     4 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE---ER 60

Query:   196 QKVLSARYWFECKCRAC 212
             +K L  +Y FEC C  C
Sbjct:    61 RKQLRDQYCFECDCFRC 77

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

MGI|MGI:2442796 Smyd4 "SET and MYND domain containing 4" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 58/264 (21%), Positives = 111/264 (42%)

Query:    75 SFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHH--FPNA 132
             S QA T  S   K+++  L  D  +    +L+ +  LQ NA  +        +     N+
Sbjct:   459 SVQAQTLKSPKLKAVTPGLCADLTVWGAAMLRHMLQLQCNAQAITSICHTGSNESIITNS 518

Query:   133 KINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHL 192
             +   +  GI+P VSL NH C P  +  F G    V+A + +   + +   YG   SR  +
Sbjct:   519 RQIRLATGIFPVVSLLNHSCRPNTSVSFTGTVATVRAAQRIAKGQEILHCYGPHESRMGV 578

Query:   193 IDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKK 252
              +RQ+ LS++Y+F+C+C AC        +  ++     C    C     T + L      
Sbjct:   579 AERQQRLSSQYFFDCRCGACHAETLRAAAAPRW--EAFC----C----KTCRALMQGNDV 628

Query:   253 VEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVP 312
             +    ESC ++    ++ ++L +L +      + + T    +A++ L +  +     +  
Sbjct:   629 LSCSNESCTNSVSRDQLVSRLQDLQQQVCMAQKLLRTGKPEQAIQQLLRCREAAESFLSA 688

Query:   313 PYKLASLAHEALRNCWSLAGNKWV 336
              + +     + L    +  GN W+
Sbjct:   689 EHTVLGEIEDGLAQAHATLGN-WL 711

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0027495 CG8378 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 39/118 (33%), Positives = 58/118 (49%)

Query:   103 ILLKSLQVLQFNAH--EVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYF 160
             +L + LQ    N H  ++ E + +TK    ++       G Y  +SL NH C P   R +
Sbjct:   386 LLFRHLQTSPSNMHGIDLVEQVNETKDDQTHSS------GAYAFLSLINHSCAPNTVRIY 439

Query:   161 NGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPL 218
              G    +  LRP+K   V+ +NYG  F+      R K LS +Y F+CKC  C  N+P+
Sbjct:   440 EGTKAYMFVLRPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPM 497

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=ISS

UNIPROTKB|J9NYI0 SMYD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 49/212 (23%), Positives = 91/212 (42%)

Query:   104 LLKSLQVLQFNAHEV---YETLFK--TKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTR 158
             +LK +  LQ NA  +    ET      +++  N++   +  GI+P VSL NH C P  + 
Sbjct:   492 MLKHMLQLQCNAQAITTIQETALSGSKENNVCNSRQIRLATGIFPVVSLLNHSCSPNTSV 551

Query:   159 YFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPL 218
              F+     ++A + +   + +   YG  +SR  + DRQ+ L ++Y+F+C C AC +    
Sbjct:   552 SFSSTVATIRASQQIGKGQEILHCYGPHYSRMGVADRQQKLRSQYFFDCGCPACQKEKHR 611

Query:   219 MESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNE 278
               +  ++     C N  CG ++     L   +    +     + TS L +++ ++    E
Sbjct:   612 AVARPRW--EAFCCNQ-CGALLQGGDILSCGSMSCTESVSRDHLTSQLQDLQQQVGIAQE 668

Query:   279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELV 310
             +   G  +       E       F    H +V
Sbjct:   669 LLRSGKLEQAVQLLLECRHDAESFLSAEHSMV 700

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG2084|consensus	482		99.65
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.39
KOG1517|consensus	1387		99.2
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.1
KOG2589|consensus	453		98.63
COG2940	480	Proteins containing SET domain [General function p	97.98
KOG4442|consensus	729		97.91
KOG1080|consensus	1005		97.83
KOG1082|consensus	364		97.16
KOG1141|consensus	1262		96.42
KOG1083|consensus	1306		96.35
KOG1337|consensus	472		95.87
KOG1085|consensus	392		95.66
KOG0294|consensus	362		94.97
KOG0282|consensus	503		94.22
KOG0296|consensus	399		94.1
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.07
KOG1079|consensus	739		93.27
PLN00181	793	protein SPA1-RELATED; Provisional	92.78
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.35
KOG0302|consensus	440		91.34
KOG1188|consensus	376		91.32
KOG0646|consensus	476		90.84
KOG0283|consensus	712		90.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	90.27
PTZ00421	493	coronin; Provisional	90.25
PTZ00421	493	coronin; Provisional	90.2
KOG0264|consensus	422		89.82
KOG0291|consensus	893		89.66
PF13512	142	TPR_18: Tetratricopeptide repeat	88.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	87.9
PTZ00420	568	coronin; Provisional	87.77
KOG0294|consensus	362		87.74
KOG0319|consensus	775		87.28
KOG1188|consensus	376		87.18
KOG0302|consensus	440		87.15
KOG0281|consensus	499		86.76
KOG0269|consensus	839		86.37
PTZ00420	568	coronin; Provisional	86.28
KOG0270|consensus	463		86.07
KOG0316|consensus	307		85.87
KOG1081|consensus	463		85.74
KOG0273|consensus	524		85.57
KOG0276|consensus	794		85.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	85.01
KOG1338|consensus	466		83.86
KOG0306|consensus	888		83.74
KOG0293|consensus	519		82.62
KOG1334|consensus	559		81.99
KOG0274|consensus	537		81.81
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	81.76
PLN00181	793	protein SPA1-RELATED; Provisional	81.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	81.6
KOG0263|consensus	707		81.38
KOG0310|consensus	487		81.35
KOG0271|consensus	480		81.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	81.12
KOG0266|consensus	456		81.06
KOG0266|consensus	456		80.42
KOG1332|consensus	299		80.39
KOG0272|consensus	459		80.36

>KOG2084|consensus

Probab=99.65  E-value=3.5e-15  Score=149.75  Aligned_cols=180  Identities=21%  Similarity=0.351  Sum_probs=135.6

Q ss_pred             eeeeeeccccccCCCCCCCCeEEEEeCCEEEEEEeeccCCCC-ceeecccccccCCCHHHHHHHHHhhCCCceecCCCCC
Q psy5736         136 YVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKE-VVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVE  214 (346)
Q Consensus       136 ~~g~glyp~~s~~NHSC~PN~~~~f~g~~~~v~a~r~I~~Ge-el~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~  214 (346)
                      .++.|+||..+++||||.||+...|++....+++...+.+++ +|+++|.+  ..+++..||+.|+..|.|.|.|++|.+
T Consensus       197 ~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~--~~~~~~~r~~~l~~~~~f~c~c~rc~d  274 (482)
T KOG2084|consen  197 FLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTD--PLLSTASRQKQLRQSKLFSCQCPRCLD  274 (482)
T ss_pred             cceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecc--cccCHHHHHHHHhhccceeeecCCCCC
Confidence            589999999999999999999999999999999999999987 99999998  689999999999999999999999998


Q ss_pred             CCccccccccCccccccCCcCcCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHH
Q psy5736         215 NWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFRE  294 (346)
Q Consensus       215 ~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~  294 (346)
                      ++    +.+.+..+++|.+..|.+.+.+.....+   ...|.|..|........+..........      .....   .
T Consensus       275 ~~----~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~  338 (482)
T KOG2084|consen  275 PT----ELGTFLSSLRCENCTCGGLLGTSFLDKE---DLQWPCTECALVRLKAYVVESREELQNE------LLDAF---S  338 (482)
T ss_pred             CC----ccccchhhhhhcCCCCCCccCCCccccc---CCCccccccccchhHHHHHHHHHHHHhh------ccccC---C
Confidence            76    5566678899998888877665543221   2359999999987766555443332211      01111   1


Q ss_pred             HHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736         295 AVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN  333 (346)
Q Consensus       295 ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~  333 (346)
                      .....+.+.......+++.|.........+...+....+
T Consensus       339 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~  377 (482)
T KOG2084|consen  339 DLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLG  377 (482)
T ss_pred             hhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHh
Confidence            122344555666667888888777777766666665544

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.39  E-value=3.1e-13  Score=114.54  Aligned_cols=50  Identities=32%  Similarity=0.672  Sum_probs=45.5

Q ss_pred             ceeeeeeccccccCCCCCCCCeEEEEe----CCEEEEEEeeccCCCCceeeccc
Q psy5736         135 NYVGVGIYPTVSLFNHDCYPAVTRYFN----GKNIIVKALRPLKPKEVVAENYG  184 (346)
Q Consensus       135 ~~~g~glyp~~s~~NHSC~PN~~~~f~----g~~~~v~a~r~I~~Geel~~~Y~  184 (346)
                      ...+.++||.++++||||.|||.+.|.    ++.++|+|+|||++||||+++||
T Consensus       109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG  162 (162)
T PF00856_consen  109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG  162 (162)
T ss_dssp             EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred             cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence            457899999999999999999999998    79999999999999999999997

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>KOG1517|consensus

Probab=99.20  E-value=1.2e-11  Score=129.67  Aligned_cols=77  Identities=31%  Similarity=0.521  Sum_probs=72.0

Q ss_pred             ceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCcc--ccchhhhhhhhhcccc
Q psy5736           6 LKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYAS--HEHRLVTSFQALTDTS   83 (346)
Q Consensus         6 ~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~s--h~~~Lv~a~r~L~~~~   83 (346)
                      .+|.||||+.++.+++|.|+.+    ..++||+|++||++|++|+|+|++||.||||++|..  ..++||++|..|+++.
T Consensus      1086 ~~i~vwd~e~~~~l~~F~n~~~----~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~ 1161 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAF----PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL 1161 (1387)
T ss_pred             ceEEEEecccCceeccccCCCC----CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC
Confidence            6899999999999999999997    789999999999999999999999999999999987  4689999999998887


Q ss_pred             ccc
Q psy5736          84 FVN   86 (346)
Q Consensus        84 y~~   86 (346)
                      +-.
T Consensus      1162 ~~~ 1164 (1387)
T KOG1517|consen 1162 PGA 1164 (1387)
T ss_pred             ccC
Confidence            765

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=99.10  E-value=6e-11  Score=95.90  Aligned_cols=46  Identities=28%  Similarity=0.445  Sum_probs=41.0

Q ss_pred             eeeeccccccCCCCCCCCeEEEEeC--C--EEEEEEeeccCCCCceeecc
Q psy5736         138 GVGIYPTVSLFNHDCYPAVTRYFNG--K--NIIVKALRPLKPKEVVAENY  183 (346)
Q Consensus       138 g~glyp~~s~~NHSC~PN~~~~f~g--~--~~~v~a~r~I~~Geel~~~Y  183 (346)
                      +..++|.++++||||.||+...+..  +  .+.++|+|+|++||||+++|
T Consensus        67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            3448999999999999999988753  2  69999999999999999998

Putative methyl transferase, based on outlier plant homologues

>KOG2589|consensus

Probab=98.63  E-value=1.6e-08  Score=96.39  Aligned_cols=60  Identities=32%  Similarity=0.560  Sum_probs=52.0

Q ss_pred             ccccCCCCCCCCeEEEEeC-CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCC
Q psy5736         144 TVSLFNHDCYPAVTRYFNG-KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVEN  215 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f~g-~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~  215 (346)
                      -++++||.|.|||.++-.| +++.|+++|||++|||||.=|+..|...            -.-.|.|..|...
T Consensus       196 PaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG~------------~N~~CeC~TCER~  256 (453)
T KOG2589|consen  196 PAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFGE------------NNEECECVTCERR  256 (453)
T ss_pred             cHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccCC------------CCceeEEeecccc
Confidence            4779999999999999887 8999999999999999999999976443            2358999999864

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=97.98  E-value=4.2e-06  Score=85.29  Aligned_cols=71  Identities=23%  Similarity=0.358  Sum_probs=57.3

Q ss_pred             cccccCCCCCCCCeEEEEeC----CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCC
Q psy5736         143 PTVSLFNHDCYPAVTRYFNG----KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVEN  215 (346)
Q Consensus       143 p~~s~~NHSC~PN~~~~f~g----~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~  215 (346)
                      ..+.++||||.||+.....+    ..+.++|+|||.+||||+..|+..  .....++...+...+...|.|.+|...
T Consensus       404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (480)
T COG2940         404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS--LEDNRELKKLLEKRWGCACGEDRCSHT  478 (480)
T ss_pred             cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc--cccchhhhhhhhhhhccccCCCccCCC
Confidence            34669999999999999764    389999999999999999999873  333333466777789999999999764

>KOG4442|consensus

Probab=97.91  E-value=7e-06  Score=84.34  Aligned_cols=41  Identities=22%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             cccCCCCCCCCeEEE---EeC-CEEEEEEeeccCCCCceeecccc
Q psy5736         145 VSLFNHDCYPAVTRY---FNG-KNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       145 ~s~~NHSC~PN~~~~---f~g-~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      +-++||||+|||.+-   ..| .+|-+.|.|+|++|||||+.|.-
T Consensus       194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf  238 (729)
T KOG4442|consen  194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF  238 (729)
T ss_pred             HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence            447899999999854   223 57888999999999999999964

>KOG1080|consensus

Probab=97.83  E-value=1.1e-05  Score=87.36  Aligned_cols=41  Identities=24%  Similarity=0.455  Sum_probs=36.1

Q ss_pred             ccccCCCCCCCCeEEEEe---C-CEEEEEEeeccCCCCceeeccc
Q psy5736         144 TVSLFNHDCYPAVTRYFN---G-KNIIVKALRPLKPKEVVAENYG  184 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f~---g-~~~~v~a~r~I~~Geel~~~Y~  184 (346)
                      .|.+|||||.|||..-..   | .+++|.|.|+|++|||||..|-
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk  983 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK  983 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence            378999999999996653   3 6899999999999999999994

>KOG1082|consensus

Probab=97.16  E-value=0.00026  Score=69.77  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=35.9

Q ss_pred             ccCCCCCCCCeEEEEe--C------CEEEEEEeeccCCCCceeecccccc
Q psy5736         146 SLFNHDCYPAVTRYFN--G------KNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       146 s~~NHSC~PN~~~~f~--g------~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      -++||||.||+.+...  +      -.+.+.|+++|++|+|||..|+..+
T Consensus       274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~  323 (364)
T KOG1082|consen  274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY  323 (364)
T ss_pred             ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence            3789999999998753  3      3689999999999999999999743

>KOG1141|consensus

Probab=96.42  E-value=0.0012  Score=69.32  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             cccCCCCCCCCeEEE--EeCC------EEEEEEeeccCCCCceeecccc
Q psy5736         145 VSLFNHDCYPAVTRY--FNGK------NIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       145 ~s~~NHSC~PN~~~~--f~g~------~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      +-++||||+||+.+.  |.+.      -+.+.|.+-|++|+|||..|..
T Consensus      1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Y 1238 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQY 1238 (1262)
T ss_pred             hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccc
Confidence            347899999999865  5442      3567888999999999999975

>KOG1083|consensus

Probab=96.35  E-value=0.0023  Score=68.78  Aligned_cols=41  Identities=29%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             cccCCCCCCCCeEEE---EeC-CEEEEEEeeccCCCCceeecccc
Q psy5736         145 VSLFNHDCYPAVTRY---FNG-KNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       145 ~s~~NHSC~PN~~~~---f~g-~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      +-.+||||.|||...   .+| .++.|.|.|||++||||+..|--
T Consensus      1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred             ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccc
Confidence            347899999999854   345 68999999999999999999853

>KOG1337|consensus

Probab=95.87  E-value=0.0067  Score=61.84  Aligned_cols=61  Identities=25%  Similarity=0.273  Sum_probs=48.5

Q ss_pred             eeeeccccccCCCCCCCCeEEEEe-CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCc
Q psy5736         138 GVGIYPTVSLFNHDCYPAVTRYFN-GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFE  206 (346)
Q Consensus       138 g~glyp~~s~~NHSC~PN~~~~f~-g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~  206 (346)
                      -.++.|..-+.||+|.+....+.. +..+.+.+.++|.+||||+++||+.    +    ...|...|||.
T Consensus       230 ~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~----~----N~eLL~~YGFv  291 (472)
T KOG1337|consen  230 NEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPK----S----NAELLLHYGFV  291 (472)
T ss_pred             chhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCC----c----hHHHHHhcCCC
Confidence            367899999999999994443332 4589999999999999999999972    2    23466689995

>KOG1085|consensus

Probab=95.66  E-value=0.0074  Score=56.58  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             cccCCCCCCCCeEEEE---eC-CEEEEEEeeccCCCCceeecccc
Q psy5736         145 VSLFNHDCYPAVTRYF---NG-KNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       145 ~s~~NHSC~PN~~~~f---~g-~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      .-|||||=.+|+....   +| -.+++.|.|+|.+||||+..||+
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGD  378 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGD  378 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccc
Confidence            4589999999998553   34 58999999999999999999998

>KOG0294|consensus

Probab=94.97  E-value=0.036  Score=52.83  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=51.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCcc--ccchhhh
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYAS--HEHRLVT   74 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~s--h~~~Lv~   74 (346)
                      |-+++|++||..+...++.|.       -|..||+++.++-..+.-++.++++||.|++|+.=+.  ..+++++
T Consensus       226 ~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~  292 (362)
T KOG0294|consen  226 GDNEWISLKDTDSDTPLTEFL-------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLA  292 (362)
T ss_pred             cCCceEEEeccCCCccceeee-------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeE
Confidence            346899999999988888773       2789999999877777899999999999999965443  2344444

>KOG0282|consensus

Probab=94.22  E-value=0.071  Score=53.27  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +|.++.|.+||.|+|+-+.+|..+.        ..+++| +++++..+.|+|.+||.|+.|.
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~--------~~~cvk-f~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDK--------VPTCVK-FHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCC--------Cceeee-cCCCCCcEEEEecCCCcEEEEe
Confidence            4788999999999999999997665        356666 4556678999999999999994

>KOG0296|consensus

Probab=94.10  E-value=0.048  Score=52.81  Aligned_cols=51  Identities=20%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      .+++|+|.|||..+.+.  ++.++++      .-|+.|+++|   ..+++++..+|.||+|.
T Consensus       304 G~vdG~i~iyD~a~~~~--R~~c~he------~~V~~l~w~~---t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  304 GSVDGTIAIYDLAASTL--RHICEHE------DGVTKLKWLN---TDYLLTACANGKVRQWD  354 (399)
T ss_pred             ccccceEEEEecccchh--heeccCC------CceEEEEEcC---cchheeeccCceEEeee
Confidence            36899999999987744  3344443      3499999999   55668899999999993

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.07  E-value=0.19  Score=37.31  Aligned_cols=51  Identities=16%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      |.-....|++++|+..+++.++. .+.+.+.|+.+..+...|+.+|...|+.
T Consensus        12 a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~   62 (78)
T PF13424_consen   12 ARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDY   62 (78)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            44445679999999999999999 7777889999999999999999999875

...

>KOG1079|consensus

Probab=93.27  E-value=0.074  Score=55.26  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             ccccCCCCCCCCeEEEE--e-C-CEEEEEEeeccCCCCceeecccc
Q psy5736         144 TVSLFNHDCYPAVTRYF--N-G-KNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f--~-g-~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      .+-+.|||=.|||....  . | .++-++|.|.|.+|||||+.|..
T Consensus       665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY  710 (739)
T KOG1079|consen  665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY  710 (739)
T ss_pred             hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence            34578999999998543  2 4 68889999999999999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.78  E-value=0.19  Score=54.41  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=43.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..+.       .|...|+++.+. ..++.++++|+.||.|++|..
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l~~~-p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMK-------EHEKRVWSIDYS-SADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEec-------CCCCCEEEEEEc-CCCCCEEEEEcCCCEEEEEEC
Confidence            568999999999988777663       266789999964 345678899999999999954

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.35  E-value=0.32  Score=31.19  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=19.9

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh
Q psy5736         283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL  316 (346)
Q Consensus       283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~  316 (346)
                      |.-....|++++|++++++.++.+.+++.+.||.
T Consensus         9 a~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    9 ANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            4445677999999999999999999999999984

>KOG0302|consensus

Probab=91.34  E-value=0.3  Score=47.78  Aligned_cols=57  Identities=26%  Similarity=0.473  Sum_probs=40.3

Q ss_pred             cccceEEEEecCCC-ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE--eCCcc
Q psy5736           3 GLFLKEGIWDHITG-SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY--RNYAS   67 (346)
Q Consensus         3 ~~~~~~~~w~~~~~-~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~--r~~~s   67 (346)
                      +.+|+|.|||..++ ++-+.+.  +.    |.+.|.-|-+ | ...++++.|.+||.++||  |.+.+
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~--kA----h~sDVNVISW-n-r~~~lLasG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVST--KA----HNSDVNVISW-N-RREPLLASGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             ecCceEEEEEecCCCccceeEe--ec----cCCceeeEEc-c-CCcceeeecCCCceEEEEEhhhccC
Confidence            46899999999998 3444333  32    6666666554 3 234489999999999999  77754

>KOG1188|consensus

Probab=91.32  E-value=0.3  Score=47.14  Aligned_cols=51  Identities=14%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      -|.|+++||.+++.|--|.-       +..-+.-++|++++.-..+.++++||.||+|
T Consensus        49 ngsv~lyd~~tg~~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w   99 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLW   99 (376)
T ss_pred             CCeEEEEeccchhhhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence            48999999999988887752       3455779999999665666889999999999

>KOG0646|consensus

Probab=90.84  E-value=0.19  Score=50.10  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=45.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      +..|+|.+|-..+|+.|+.++       .|.-.||.|+|.+  |++++.+|+.||.|.+|
T Consensus       100 ~i~g~lYlWelssG~LL~v~~-------aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW  150 (476)
T KOG0646|consen  100 TISGNLYLWELSSGILLNVLS-------AHYQSITCLKFSD--DGSHIITGSKDGAVLVW  150 (476)
T ss_pred             cccCcEEEEEeccccHHHHHH-------hhccceeEEEEeC--CCcEEEecCCCccEEEE
Confidence            378999999999999998762       3788999999875  88999999999999999

>KOG0283|consensus

Probab=90.60  E-value=0.31  Score=51.55  Aligned_cols=54  Identities=17%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      ..|.||.+|+-++..-|+.|.        |..-+|+++ +|+-||.+.+.|+=||.+|+|.-.
T Consensus       387 SMDKTVRLWh~~~~~CL~~F~--------HndfVTcVa-FnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRKECLKVFS--------HNDFVTCVA-FNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             cccccEEeecCCCcceeeEEe--------cCCeeEEEE-ecccCCCcEeecccccceEEeecC
Confidence            468899999999999999995        556799999 588999999999999999999544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.27  E-value=0.4  Score=30.41  Aligned_cols=31  Identities=19%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             CCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736          31 RNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus        31 ~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      .|...|++|.+...  ...+++|+.||.|++|.
T Consensus         9 ~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            36778999996543  78889999999999984

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PTZ00421 coronin; Provisional

Probab=90.25  E-value=0.47  Score=48.77  Aligned_cols=60  Identities=7%  Similarity=-0.068  Sum_probs=39.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||..++.........-.....|...|.++.+. +....++++|+.||.|++|.
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~-P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH-PSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC-cCCCCEEEEEeCCCEEEEEE
Confidence            5689999999976532110000000122367789999874 44456889999999999994

>PTZ00421 coronin; Provisional

Probab=90.20  E-value=0.54  Score=48.32  Aligned_cols=52  Identities=27%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      |.+|+|.|||.++++.+..+..       |...|.++.+-  .+..++++|+.||.|++|.
T Consensus       145 s~DgtVrIWDl~tg~~~~~l~~-------h~~~V~sla~s--pdG~lLatgs~Dg~IrIwD  196 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVEVIKC-------HSDQITSLEWN--LDGSLLCTTSKDKKLNIID  196 (493)
T ss_pred             eCCCEEEEEECCCCeEEEEEcC-------CCCceEEEEEE--CCCCEEEEecCCCEEEEEE
Confidence            5689999999999987776642       44568888863  3567889999999999995

>KOG0264|consensus

Probab=89.82  E-value=0.51  Score=46.79  Aligned_cols=57  Identities=25%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE--eCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY--RNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~--r~~   65 (346)
                      |-++.+.|||-.++ ...--.. ..   .|..++.++. +|++++.++++|++||.|.+|  |++
T Consensus       247 ~dd~~L~iwD~R~~-~~~~~~~-~~---ah~~~vn~~~-fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSN-TSKPSHS-VK---AHSAEVNCVA-FNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             cCCCeEEEEEcCCC-CCCCccc-cc---ccCCceeEEE-eCCCCCceEEeccCCCcEEEeechhc
Confidence            45678899999864 1111111 12   3678899988 799999999999999999999  665

>KOG0291|consensus

Probab=89.66  E-value=0.43  Score=50.39  Aligned_cols=51  Identities=27%  Similarity=0.476  Sum_probs=39.4

Q ss_pred             cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      -|++-||+|.+..-+   .-|..    |..++++|.  =.+|..+..+|.+||.|++|..
T Consensus       329 lgQLlVweWqsEsYV---lKQQg----H~~~i~~l~--YSpDgq~iaTG~eDgKVKvWn~  379 (893)
T KOG0291|consen  329 LGQLLVWEWQSESYV---LKQQG----HSDRITSLA--YSPDGQLIATGAEDGKVKVWNT  379 (893)
T ss_pred             cceEEEEEeecccee---eeccc----cccceeeEE--ECCCCcEEEeccCCCcEEEEec
Confidence            378999999876322   22333    888999988  3478889999999999999953

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.15  E-value=1.6  Score=37.38  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736         277 NEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN  333 (346)
Q Consensus       277 ~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~  333 (346)
                      .++|.+|.+++++|++++|++.++.+...|     |..+.-.+++..|+.+|-.-|+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~   62 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGD   62 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccC
Confidence            457778888888888888888888887766     5555555555555555555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=87.90  E-value=2  Score=38.55  Aligned_cols=54  Identities=19%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      ...+|..|...++.|++.+|++.|++++..+     |.++....+...|+.+|-..|+.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y   58 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDY   58 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCH
Confidence            4567888888899999999999999998886     77788888888888888777653

>PTZ00420 coronin; Provisional

Probab=87.77  E-value=1.2  Score=46.59  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |.+|.|.+|+-.+...+..+.       .|+..|.++.+ +++++.++++|+.||.|++|..-
T Consensus        51 G~~gvI~L~~~~r~~~v~~L~-------gH~~~V~~laf-sP~~~~lLASgS~DgtIrIWDi~  105 (568)
T PTZ00420         51 GLIGAIRLENQMRKPPVIKLK-------GHTSSILDLQF-NPCFSEILASGSEDLTIRVWEIP  105 (568)
T ss_pred             CceeEEEeeecCCCceEEEEc-------CCCCCEEEEEE-cCCCCCEEEEEeCCCeEEEEECC
Confidence            678999999987766555553       26778999986 55567788999999999999643

>KOG0294|consensus

Probab=87.74  E-value=0.67  Score=44.42  Aligned_cols=55  Identities=25%  Similarity=0.266  Sum_probs=44.8

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +|-+.+|.|||..+...+-...       .|...||+|+|.-.-..+=|+.|++||.|-+|+
T Consensus        59 GssDetI~IYDm~k~~qlg~ll-------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   59 GSSDETIHIYDMRKRKQLGILL-------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cCCCCcEEEEeccchhhhccee-------ccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            4678999999998876665443       256789999998887777889999999999984

>KOG0319|consensus

Probab=87.28  E-value=0.8  Score=48.20  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=45.6

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      .|.+|.|.|||+..+.-.-+|.       .|+.-+.++.|..-..--++..|++||.+++|.
T Consensus       123 ggaD~~v~VWdi~~~~~th~fk-------G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn  177 (775)
T KOG0319|consen  123 GGADGRVKVWDIKNGYCTHSFK-------GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN  177 (775)
T ss_pred             ccccceEEEEEeeCCEEEEEec-------CCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence            4789999999999999998884       256678888876555567888999999999994

>KOG1188|consensus

Probab=87.18  E-value=0.69  Score=44.71  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=39.8

Q ss_pred             cccceEEEEecCCCcee-eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRL-ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-.-.|-+|||.+.+++ -.+.   .+   |.-.||.|+|+-. +..++|+||.||.+.+|..
T Consensus       140 ~s~A~v~lwDvR~~qq~l~~~~---eS---H~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  140 RSDASVVLWDVRSEQQLLRQLN---ES---HNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             cCceEEEEEEeccccchhhhhh---hh---ccCcceeEEecCC-CCCeEEeecccceEEeeec
Confidence            33456899999888773 3221   21   6678999998764 4556689999999999943

>KOG0302|consensus

Probab=87.15  E-value=0.85  Score=44.69  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=42.9

Q ss_pred             cccceEEEEecCC---CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHIT---GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~---~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |=+|+++|||...   ++.+-.       ++-|+..||++.+ ++++++++++++.|.+|.+|..-
T Consensus       321 ~DdGt~~iwDLR~~~~~~pVA~-------fk~Hk~pItsieW-~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  321 GDDGTLSIWDLRQFKSGQPVAT-------FKYHKAPITSIEW-HPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CCCceEEEEEhhhccCCCccee-------EEeccCCeeEEEe-ccccCceEEeccCCCcEEEEEee
Confidence            4579999999742   333333       4468899999996 56889999999999999999654

>KOG0281|consensus

Probab=86.76  E-value=0.41  Score=46.46  Aligned_cols=61  Identities=21%  Similarity=0.323  Sum_probs=42.5

Q ss_pred             ccceEEEEecCCCceee------------eeCCCCCC----------CCCCCC-cccceec-------ccc--CCCceEE
Q psy5736           4 LFLKEGIWDHITGSRLI------------SWRPDRGS----------WARNSA-RCTALTL-------LNE--HDDSLLL   51 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~------------~~~~~~~~----------w~~~~~-~~t~l~~-------ine--~~~~lll   51 (346)
                      -+.+|.||||++|+.++            .|+|+-.-          |++..+ .||.+.+       +|.  -++.+.+
T Consensus       255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV  334 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  334 (499)
T ss_pred             CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence            36799999999999887            45554321          766553 4555443       344  4577888


Q ss_pred             eeecCCceEEEeC
Q psy5736          52 TGYDDGSLSVYRN   64 (346)
Q Consensus        52 ~g~~dG~vri~r~   64 (346)
                      +++.|-.+++|..
T Consensus       335 sASgDRTikvW~~  347 (499)
T KOG0281|consen  335 SASGDRTIKVWST  347 (499)
T ss_pred             EecCCceEEEEec
Confidence            8999999999843

>KOG0269|consensus

Probab=86.37  E-value=0.57  Score=49.53  Aligned_cols=52  Identities=15%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             ccceEEEEecCC---CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           4 LFLKEGIWDHIT---GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         4 ~~~~~~~w~~~~---~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      --|.|+|||...   .+.+..|       ..|.+-++.+.|.- ..-.++++|++||.|+.|.
T Consensus       108 ~nG~i~vWdlnk~~rnk~l~~f-------~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKLLTVF-------NEHERSANKLDFHS-TEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             CCCcEEEEecCccccchhhhHh-------hhhccceeeeeecc-CCccEEEecCCCceEEEEe
Confidence            458999999988   3444444       34778899999655 4456668999999999993

>PTZ00420 coronin; Provisional

Probab=86.28  E-value=1.4  Score=46.21  Aligned_cols=52  Identities=15%  Similarity=0.146  Sum_probs=39.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      |.+|+|.|||.++++.+..+.        +...|+++.+-  .+..++++++.||.+++|..
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~--------~~~~V~Slsws--pdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQIN--------MPKKLSSLKWN--IKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEe--------cCCcEEEEEEC--CCCCEEEEEecCCEEEEEEC
Confidence            678999999999998776553        22468888853  35667788889999999953

>KOG0270|consensus

Probab=86.07  E-value=1.2  Score=44.40  Aligned_cols=53  Identities=23%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      +|.+-+|.+||..+|+....+.       .|+.+|.+|++.+-.+ .++|+|+-||.++++
T Consensus       262 gsaD~TV~lWD~~~g~p~~s~~-------~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  262 GSADKTVKLWDVDTGKPKSSIT-------HHGKKVQTLEWHPYEP-SVLLSGSYDGTVALK  314 (463)
T ss_pred             cCCCceEEEEEcCCCCcceehh-------hcCCceeEEEecCCCc-eEEEeccccceEEee
Confidence            4788999999999998777663       3678999999888544 555779999999998

>KOG0316|consensus

Probab=85.87  E-value=1.4  Score=40.82  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      |-+..|.|||.++|+.+-+|.       -|..++..++ +|| +.++++.|+-|..+|.|
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~r-------gH~aqVNtV~-fNe-esSVv~SgsfD~s~r~w  128 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFR-------GHLAQVNTVR-FNE-ESSVVASGSFDSSVRLW  128 (307)
T ss_pred             CCCceEEEEEcccCeeeeecc-------cccceeeEEE-ecC-cceEEEeccccceeEEE
Confidence            667899999999999887763       3778999998 464 45667889999999999

>KOG1081|consensus

Probab=85.74  E-value=0.33  Score=49.40  Aligned_cols=50  Identities=24%  Similarity=0.291  Sum_probs=39.9

Q ss_pred             eeeeeeccccc-cCCCCCCCCeEEEE---e-CCEEEEEEeeccCCCCceeecccc
Q psy5736         136 YVGVGIYPTVS-LFNHDCYPAVTRYF---N-GKNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       136 ~~g~glyp~~s-~~NHSC~PN~~~~f---~-g~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      .+..+.++..| ++||||.||+.-.-   . ...+.+.|.+.|++|+|+|++|..
T Consensus       362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~  416 (463)
T KOG1081|consen  362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNG  416 (463)
T ss_pred             ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeec
Confidence            34556677666 57999999998653   2 367899999999999999999975

>KOG0273|consensus

Probab=85.57  E-value=1.6  Score=43.88  Aligned_cols=60  Identities=27%  Similarity=0.431  Sum_probs=43.2

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCC-----C-----------------------------CCCCCcccceeccccCCC
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGS-----W-----------------------------ARNSARCTALTLLNEHDD   47 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~-----w-----------------------------~~~~~~~t~l~~ine~~~   47 (346)
                      .|.+|++.+||-.+|.....|.-...-     |                             .-|..+|.+||+ | ++.
T Consensus       294 ~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~-n-~tg  371 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW-N-PTG  371 (524)
T ss_pred             ccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE-C-CCC
Confidence            367899999999888777655422110     2                             335667777773 3 568


Q ss_pred             ceEEeeecCCceEEEe
Q psy5736          48 SLLLTGYDDGSLSVYR   63 (346)
Q Consensus        48 ~lll~g~~dG~vri~r   63 (346)
                      .+|+++++||.++||.
T Consensus       372 ~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  372 SLLASCSDDGTLKIWS  387 (524)
T ss_pred             ceEEEecCCCeeEeee
Confidence            8999999999999994

>KOG0276|consensus

Probab=85.53  E-value=0.96  Score=47.00  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=38.8

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      ..|+|.|||++++..+.+|.=.+       ..|-+-|||.-  ..-.++|++|+.||+|
T Consensus        33 ynG~V~IWnyetqtmVksfeV~~-------~PvRa~kfiaR--knWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVSE-------VPVRAAKFIAR--KNWIVTGSDDMQIRVF   82 (794)
T ss_pred             ecCeeEEEecccceeeeeeeecc-------cchhhheeeec--cceEEEecCCceEEEE
Confidence            35999999999999999996444       34556666643  3456889999999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=85.01  E-value=2  Score=37.75  Aligned_cols=54  Identities=13%  Similarity=0.212  Sum_probs=40.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|.|.|||.++++.+..+..       |...++++.+...  ..++++++.||.+++|..-
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTG-------HTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEec-------cCCcEEEEEEcCC--CCEEEEecCCCeEEEEECC
Confidence            4589999999998877766642       4457888887654  5676767779999999543

>KOG1338|consensus

Probab=83.86  E-value=0.93  Score=44.73  Aligned_cols=53  Identities=21%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             ccceeeeeeccccccCCCCCC-CCeEEEEeCCEEEEEEeeccCCCCceeecccc
Q psy5736         133 KINYVGVGIYPTVSLFNHDCY-PAVTRYFNGKNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       133 ~~~~~g~glyp~~s~~NHSC~-PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      +....|-..-|.+-++||.=. -|+.-.+.++.+.+.|.|+|++|+|++.+|+.
T Consensus       207 e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgdev~n~dg~  260 (466)
T KOG1338|consen  207 EIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGDEVDNSDGL  260 (466)
T ss_pred             ccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcccccccccc
Confidence            345678889999999999866 56666778899999999999999999999984

>KOG0306|consensus

Probab=83.74  E-value=1  Score=47.66  Aligned_cols=54  Identities=30%  Similarity=0.388  Sum_probs=39.5

Q ss_pred             cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      -.+|.+||..+|.......-.+     .+.+||++.  +.++..++.+|+.||.|++|.+-
T Consensus        42 ~E~vn~WdlRtge~~~~l~~~~-----~k~evt~l~--~~~d~l~lAVGYaDGsVqif~~~   95 (888)
T KOG0306|consen   42 LEQVNIWDLRTGEIEKKLILLK-----KKAEVTCLR--SSDDILLLAVGYADGSVQIFSLE   95 (888)
T ss_pred             cccEeEEeeecchhhhhhhhhc-----ccceEEEee--ccCCcceEEEEecCceEEeeccC
Confidence            4678999999994433332222     235899987  55667778999999999999776

>KOG0293|consensus

Probab=82.62  E-value=1.4  Score=43.78  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=42.0

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      -++.|.||+-.+|..+...+ |      |...|..+. -|+.+-.|...|++||.||||..-
T Consensus       460 ED~kvyIWhr~sgkll~~Ls-G------Hs~~vNcVs-wNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  460 EDSKVYIWHRISGKLLAVLS-G------HSKTVNCVS-WNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCceEEEEEccCCceeEeec-C------CcceeeEEe-cCCCCHHHhhccCCCCeEEEecCC
Confidence            36899999999998886553 2      444455544 588999999999999999999643

>KOG1334|consensus

Probab=81.99  E-value=1.3  Score=44.80  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=45.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+.+|-||||.+++...+|..+      |...+---|||--.++.-+.+.+.||.+|.=...
T Consensus       161 SDD~~vv~WdW~~~~~~l~f~SG------H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  161 SDDLQVVVWDWVSGSPKLSFESG------HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             CccceEEeehhhccCcccccccc------cccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            44678999999999999999765      5667877788888777777778889999875433

>KOG0274|consensus

Probab=81.81  E-value=2.7  Score=43.67  Aligned_cols=50  Identities=24%  Similarity=0.388  Sum_probs=39.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+.+|.|||+++++.++-+.-       |..-|.++..-    +.++++|+.||.|++|+
T Consensus       308 s~D~tVkVW~v~n~~~l~l~~~-------h~~~V~~v~~~----~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGACLNLLRG-------HTGPVNCVQLD----EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             cCCceEEEEeccCcceEEEecc-------ccccEEEEEec----CCEEEEEecCceEEEEE
Confidence            3678999999999999987631       45557776633    78889999999999994

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=81.76  E-value=2.9  Score=29.58  Aligned_cols=46  Identities=13%  Similarity=-0.025  Sum_probs=35.3

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      ..|...++.|++++|++.++++++..        |.-..+...|..++...|+.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~   47 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRY   47 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCH
Confidence            34566788899999999998888765        33567888889999888875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=81.66  E-value=2.8  Score=45.49  Aligned_cols=53  Identities=13%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      |.+|+|.|||..++..+..+..        +..+.++.+.. ++..++++|+.||.|++|..
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~--------~~~v~~v~~~~-~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKT--------KANICCVQFPS-ESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEec--------CCCeEEEEEeC-CCCCEEEEEeCCCeEEEEEC
Confidence            5689999999999887776642        23577777643 56778899999999999953

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.60  E-value=3  Score=39.22  Aligned_cols=52  Identities=13%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      .+|+.|.+.+.+|++.+|...|.++++.|     |+....-+|+..|-++|-..|+.
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y  194 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDY  194 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccc
Confidence            37889999999999999999999999999     77788888888888888888775

>KOG0263|consensus

Probab=81.38  E-value=2.9  Score=44.26  Aligned_cols=54  Identities=20%  Similarity=0.298  Sum_probs=45.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+-+|.+||-.+|..+-.|. +      |+..|++|.+-  +.+..+.+|+.||.|.+|+.-
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~-G------H~~~V~al~~S--p~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFT-G------HKGPVTALAFS--PCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEec-C------CCCceEEEEEc--CCCceEeecccCCcEEEEEcC
Confidence            467899999999998887772 2      78899999953  588888999999999999654

>KOG0310|consensus

Probab=81.35  E-value=1.7  Score=43.67  Aligned_cols=49  Identities=31%  Similarity=0.419  Sum_probs=38.1

Q ss_pred             ceEEEEecCCC-ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           6 LKEGIWDHITG-SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         6 ~~~~~w~~~~~-~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      ..|.|||.-+| +.+..+.|       |...+|+|.+-.  +...|++|+=||.+++|.
T Consensus       217 n~vkVWDl~~G~qll~~~~~-------H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFN-------HNKTVTCLRLAS--DSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             CeEEEEEecCCceehhhhhc-------ccceEEEEEeec--CCceEeecccccceEEEE
Confidence            47999999966 55555544       345799999655  558889999999999996

>KOG0271|consensus

Probab=81.26  E-value=2.3  Score=41.95  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecccc---CCCceEEeeecCCceEEEe
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNE---HDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine---~~~~lll~g~~dG~vri~r   63 (346)
                      .+|+|.+||=++|+.+-+      +.+.|+.-|++|.+---   ++-.++.+++-||.+|||.
T Consensus       177 ~dg~I~lwdpktg~~~g~------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQIGR------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCeEEEecCCCCCcccc------cccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            689999999999988753      34568889999987433   4455666677799999994

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=81.12  E-value=4.3  Score=31.65  Aligned_cols=48  Identities=17%  Similarity=0.118  Sum_probs=33.7

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      .+...+..+++++|++.+.+++..+     |.++....+...++.+|...|+.
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~   92 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSLQELGDK   92 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHHHHhCCh
Confidence            3444566677777777777777654     67776677788888888877765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0266|consensus

Probab=81.06  E-value=3.1  Score=42.21  Aligned_cols=51  Identities=24%  Similarity=0.426  Sum_probs=38.9

Q ss_pred             cccceEEEEecCCC-ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           3 GLFLKEGIWDHITG-SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         3 ~~~~~~~~w~~~~~-~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      +.+++|.|||-+.. .-+-.+. +      |...++++.| ++.. .+++.|+.||.||+|
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~-g------H~~~v~~~~f-~p~g-~~i~Sgs~D~tvriW  273 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLK-G------HSTYVTSVAF-SPDG-NLLVSGSDDGTVRIW  273 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEec-C------CCCceEEEEe-cCCC-CEEEEecCCCcEEEE
Confidence            45889999999444 4444553 2      6778899884 5455 888999999999999

>KOG0266|consensus

Probab=80.42  E-value=2.9  Score=42.34  Aligned_cols=55  Identities=24%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA   66 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~   66 (346)
                      +.+++|.|||.++++.+-.+.       .|+..|+.+.| + .++.++++++.||.+++|..+.
T Consensus       265 s~D~tvriWd~~~~~~~~~l~-------~hs~~is~~~f-~-~d~~~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  265 SDDGTVRIWDVRTGECVRKLK-------GHSDGISGLAF-S-PDGNLLVSASYDGTIRVWDLET  319 (456)
T ss_pred             cCCCcEEEEeccCCeEEEeee-------ccCCceEEEEE-C-CCCCEEEEcCCCccEEEEECCC
Confidence            568999999999987766553       46778998863 3 4666778888899999996653

>KOG1332|consensus

Probab=80.39  E-value=2.3  Score=39.59  Aligned_cols=55  Identities=25%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      .+|.|.||..+.| |-+.    ..-|..|+..++++.+-=-.-.-+|+.|++||.|++++
T Consensus        78 YDgkVIiWke~~g-~w~k----~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   78 YDGKVIIWKEENG-RWTK----AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             cCceEEEEecCCC-chhh----hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            5799999999988 4432    22355688889988854323367778889999999984

>KOG0272|consensus

Probab=80.36  E-value=2.2  Score=42.40  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      |-++++.|||-....-+...    |+   |...||.+++.- ....++++++-|+.+++|
T Consensus       364 s~Dnt~kVWDLR~r~~ly~i----pA---H~nlVS~Vk~~p-~~g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTI----PA---HSNLVSQVKYSP-QEGYFLVTASYDNTVKIW  415 (459)
T ss_pred             CCCCcEEEeeecccccceec----cc---ccchhhheEecc-cCCeEEEEcccCcceeee
Confidence            46899999999977666543    54   788899999765 678899999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-10
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		1e-10
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		1e-10
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-10
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		1e-10
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		7e-10
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		2e-07
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		2e-07
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		2e-07
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		2e-07
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		1e-06

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 228
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 229 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 266

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 171 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 230
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 231 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 268

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 170 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 229
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 230 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 267

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 205 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 264
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 265 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 302

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 228
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y  +       +R+K L  +Y FEC C  C
Sbjct: 229 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 266

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
           F+  E +  +        NA+   VGVG+YP++SL NH C P  +  FNG +++++A+R 
Sbjct: 170 FDLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 229
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
           ++  E +   Y          +R+K L  +Y FEC C  C
Sbjct: 230 IEVGEELTICYLDXLXTSE--ERRKQLRDQYCFECDCFRC 267

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 29  WARNSARCTALTLLNEH---DDSLLLTGYDDGSLSVYRNYASHEHRL-VTSFQALTDTSF 84
           W  +   C+++ +L E+    +++ LT        ++      E  L V  F++  D   
Sbjct: 83  WPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDK-- 140
Query: 85  VNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFK----TKHHFPNAKINYVGVG 140
           ++     ++  D A + Q   K    L+F  H     LF           + +++++G  
Sbjct: 141 LDNEKKDLIQSDIAALHQFYSK---YLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 141 IYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSRKHLIDRQKVL 199
           I+P V+L NH C P V   + G    V+A++ + P + V  +Y  L++  +   DR   L
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTE---DRNDRL 254
Query: 200 SARYWFECKCRACV 213
              Y+F C+CR C 
Sbjct: 255 RDSYFFTCECRECT 268

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
           + +++++G  I+P V+L NH C P V   + G    V+A++ +KP E V  +Y  L++  
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
           +   DR   L   Y+F C+C+ C 
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
           + +++++G  I+P V+L NH C P V   + G    V+A++ +KP E V  +Y  L++  
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
           +   DR   L   Y+F C+C+ C 
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
           + +++++G  I+P V+L NH C P V   + G    V+A++ +KP E V  +Y  L++  
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
           +   DR   L   Y+F C+C+ C 
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 134 INYVGVGIYPTVSLFNHDCYPAVTRYFNGKN-------------IIVKALRPLKPKEVVA 180
           +  VGVGI+P + L NHDC+P  T  FN  N             I ++AL  +   E + 
Sbjct: 190 LQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELT 249
Query: 181 ENYGLVFSRKHLI-DRQKVLSARYWFECKCRAC 212
            +Y       HL  +R++ L  +Y+F+C C  C
Sbjct: 250 VSY---IDFLHLSEERRRQLKKQYYFDCSCEHC 279

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	1e-26
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	4e-24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	5e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  108 bits (271), Expect = 1e-26
 Identities = 56/307 (18%), Positives = 114/307 (37%), Gaps = 26/307 (8%)

Query: 11  WDHITGSRLISWRPDRGS-WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYASHE 69
                   L S +P       R   R     +     +S  L  + D  L    N  + +
Sbjct: 83  DHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD--LESNINKLTED 140

Query: 70  HRLVTSFQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHF 129
            +       +T   F+ + +    +  +   A  L ++   +  N+  +           
Sbjct: 141 RKEGLRQLVMTFQHFMREEI---QDASQLPPAFDLFEAFAKVICNSFTIC---------- 187

Query: 130 PNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSR 189
            NA++  VGVG+YP++SL NH C P  +  FNG +++++A+R ++  E +   Y  +   
Sbjct: 188 -NAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMT 246

Query: 190 KHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPS 249
               +R+K L  +Y FEC C  C       + L               + +  +++L+  
Sbjct: 247 SE--ERRKQLRDQYCFECDCFRCQTQDKDADMLT----GDEQVWKEVQESLKKIEELKAH 300

Query: 250 AKKVE--KKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIH 307
            K  +    C++  S++        + +L  +       +N     EA+   T+   + +
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-EPY 359

Query: 308 ELVVPPY 314
            +  P  
Sbjct: 360 RIFFPGS 366

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  101 bits (252), Expect = 4e-24
 Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 20/188 (10%)

Query: 101 AQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYF 160
              L+     +  N   +            + +++++G  I+P V+L NH C P V   +
Sbjct: 169 HSSLVVLFAQVNCNGFTIE-----------DEELSHLGSAIFPDVALMNHSCCPNVIVTY 217

Query: 161 NGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLME 220
            G    V+A++ + P + V  +Y  +       DR   L   Y+F C+CR C        
Sbjct: 218 KGTLAEVRAVQEIHPGDEVFTSYIDLLYPTE--DRNDRLRDSYFFTCECRECTTKDKDKA 275

Query: 221 SLEKYPIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMF 280
            +E      + S+    + I   + +   A+ V ++          +E+        E  
Sbjct: 276 KVE----VRKLSSPPQAEAI---RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKM 328

Query: 281 YRGIEQMN 288
               E  N
Sbjct: 329 SSVFEDSN 336

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 86.9 bits (214), Expect = 5e-19
 Identities = 42/222 (18%), Positives = 75/222 (33%), Gaps = 33/222 (14%)

Query: 85  VNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPT 144
           V+  L     + +    Q +     V+  N   + +             +  VGVGI+P 
Sbjct: 151 VDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSD----------QRGLQAVGVGIFPN 200

Query: 145 VSLFNHDCYPAVTRYFNGKN-------------IIVKALRPLKPKEVVAENYGLVFSRKH 191
           + L NHDC+P  T  FN  N             I ++AL  +   E +  +Y        
Sbjct: 201 LGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSE 260

Query: 192 LIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSAK 251
             +R++ L  +Y+F+C C  C +        + +         +   +    K++   +K
Sbjct: 261 --ERRRQLKKQYYFDCSCEHCQKGLK----DDLFLAAKEDPKPSQEVV----KEMIQFSK 310

Query: 252 KVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFR 293
              +K +   S     E+     E  E         N    R
Sbjct: 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR 352

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 63/401 (15%), Positives = 122/401 (30%), Gaps = 115/401 (28%)

Query: 24  PDRGSWARNSARCTALTLLNEHDDSLL-LTGYDD-GSLSVYRNYASHEHRLVTS-FQALT 80
             R    +   R   L     +++ LL L    +  +   +  +      L+T+ F+ +T
Sbjct: 224 KLRIHSIQAELR--RLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 81  D-------TSFVNKSLSTVLNEDEA--LIAQILLKSLQVLQFNAHEVYETLFKTKHHFPN 131
           D       T       S  L  DE   L+ + L    Q L     EV         + P 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREV------LTTN-PR 328

Query: 132 AKINYVGVGIYPTVSLFNHDCYPAVTRYFNGK---NIIVKALRPLKPKEVVAENYGL--V 186
             ++ +   I   ++ +++       ++ N      II  +L  L+P E   + +    V
Sbjct: 329 R-LSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSV 380

Query: 187 FSRKHLIDRQKVLSARYWF------------ECKCRACVENWPLMES------------- 221
           F     I    +LS   WF            +    + VE  P   +             
Sbjct: 381 FPPSAHIP-TILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 222 -----------LEKYPIRIRCSNDNCGQIIAT----------VKKLEPSAK--------- 251
                      ++ Y I     +D+                 +K +E   +         
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 252 -------KVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSD 304
                  K+     + N++  +      L +L   FY+     N   +   V ++  F  
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNT---LQQLK--FYKPYICDNDPKYERLVNAILDFLP 553

Query: 305 QIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPENYSQIK 345
           +I E ++   K   L   AL        ++ +  E + Q++
Sbjct: 554 KIEENLI-CSKYTDLLRIALMA-----EDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 61/212 (28%)

Query: 161 NGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLME 220
             + ++ K +     +EV+  NY  + S      RQ  +  R + E + R   +N    +
Sbjct: 74  KQEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----Q 124

Query: 221 SLEKYPI-RIRCSNDNCGQIIATVKKLEP----------------------SAKKVEKKC 257
              KY + R++       ++   + +L P                       + KV+ K 
Sbjct: 125 VFAKYNVSRLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 258 E---------SCNSTSDLTEIKTKL-SELNEMFYRGIEQMNTSCFR--EAVESLTKFSDQ 305
           +         +CNS   + E+  KL  +++  +    +  +    R       L +    
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--- 237

Query: 306 IHELVVPPYKLASLAHEALRNCWSLAGNKWVI 337
              L   PY+   L    L N      N    
Sbjct: 238 ---LKSKPYENCLL---VLLNVQ----NAKAW 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 43/285 (15%), Positives = 86/285 (30%), Gaps = 79/285 (27%)

Query: 87  KSLSTVLNEDEALIAQI------LLKSLQVLQFNAHEVYE---TLFKTKHHFPNAKINYV 137
            S  TVL   + L+ QI             ++   H +      L K+K +  N  +  +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLL 251

Query: 138 GVGIYPTVSLFNHDCYPAV-TRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQ 196
            V      + FN  C   + TR+      +   L       +  +++ +  +     D  
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTP----DEV 303

Query: 197 KVLSARYWFECKC-----RACVENWPLMESLEKYPIRIRCSNDNCGQIIATVKKLEPSA- 250
           K L  + + +C+           N P   S+                 IA   +   +  
Sbjct: 304 KSLLLK-YLDCRPQDLPREVLTTN-PRRLSI-----------------IAESIRDGLATW 344

Query: 251 ---KKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIH 307
              K V                  KL+ + E     +  +  + +R+  + L+ F    H
Sbjct: 345 DNWKHVNCD---------------KLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 308 ELVVPPYKLASLAHEALRNC----------WSLAGNKWVIPENYS 342
              +P   L+ +  + +++           +SL   K       S
Sbjct: 387 ---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTIS 427

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.97
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.96
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.5
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.38
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.29
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	99.13
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	98.99
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	98.96
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.96
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.85
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.82
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.82
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.73
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.73
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.7
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.7
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.69
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.69
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.66
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.63
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	98.29
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.93
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	97.8
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	97.61
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	97.46
3ray_A	237	PR domain-containing protein 11; structural genomi	97.24
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.76
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.51
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.49
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.44
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.82
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.46
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	94.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.76
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.59
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.54
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.39
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.39
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.36
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.35
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	93.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.91
2pm7_B	297	Protein transport protein SEC13, protein transport	93.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.83
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.78
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.67
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.64
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.59
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.47
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.41
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.39
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.37
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.25
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.18
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.05
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.8
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.74
2pm7_B	297	Protein transport protein SEC13, protein transport	92.72
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	92.72
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.67
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.66
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	92.65
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	92.62
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	92.56
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.53
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.48
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	92.45
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.41
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.33
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.14
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.11
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.08
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	91.82
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	91.8
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	91.77
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	91.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	91.7
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.55
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.46
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	91.46
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.43
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	91.42
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.4
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.39
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.35
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	91.28
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	91.22
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	91.16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.11
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.07
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	90.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.78
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	90.68
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.52
3jro_A	753	Fusion protein of protein transport protein SEC13	90.46
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.43
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.41
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	90.32
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	89.83
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	89.82
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	89.7
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.69
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	89.67
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	89.26
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	89.25
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	89.24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	89.1
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	89.1
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	89.08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	88.84
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	88.67
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	88.59
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	88.53
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	88.48
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	88.27
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	87.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	87.51
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	87.19
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	86.85
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.63
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.19
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	85.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	85.86
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	85.63
3jro_A	753	Fusion protein of protein transport protein SEC13	85.57
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	85.45
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	85.15
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	84.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	84.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	84.46
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	84.32
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	84.27
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	84.19
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	84.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	83.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	82.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	82.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	81.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	81.57
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	80.69

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.97  E-value=4.6e-31  Score=266.34  Aligned_cols=264  Identities=16%  Similarity=0.260  Sum_probs=194.4

Q ss_pred             eeeeCCCCCCCCCCCCcccceecccc-CCCceEEeee------cC------CceEEEeCCccccchhhhh-hhhh-----
Q psy5736          19 LISWRPDRGSWARNSARCTALTLLNE-HDDSLLLTGY------DD------GSLSVYRNYASHEHRLVTS-FQAL-----   79 (346)
Q Consensus        19 ~~~~~~~~~~w~~~~~~~t~l~~ine-~~~~lll~g~------~d------G~vri~r~~~sh~~~Lv~a-~r~L-----   79 (346)
                      +|+-.||..+|+.|+.+|..++.+.. +.+.++++.+      .+      +....+..+++|..++... +..+     
T Consensus        73 yCs~~Cq~~~w~~Hk~eC~~~~~~~~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~  152 (490)
T 3n71_A           73 YCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVD  152 (490)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHHHHHHHHHHH
T ss_pred             cCCHHHhhhhhhHHHHHhHHHHhcCcCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchHHHHHHHHHH
Confidence            44444666679999999999988765 3344433333      11      2233445666665444332 1111     


Q ss_pred             cccccccccccccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCCCeEEE
Q psy5736          80 TDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRY  159 (346)
Q Consensus        80 ~~~~y~~~~~~~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~PN~~~~  159 (346)
                      .-..|+.... ..++.      +.|+++++++++|+|+|....          ....+|.||||.+|+|||||+||+.+.
T Consensus       153 ~~~~~~~~~~-~~~~~------~~l~~~~~~~~~N~f~i~~~~----------g~~~~g~gl~p~~s~~NHSC~PN~~~~  215 (490)
T 3n71_A          153 TFLQYWPPQS-QQFSM------QYISHIFGVINCNGFTLSDQR----------GLQAVGVGIFPNLGLVNHDCWPNCTVI  215 (490)
T ss_dssp             HHHHHSCTTS-CCCCH------HHHHHHHHHHHTTEEEEECTT----------SCSEEEEEECTTGGGCEECSSCSEEEE
T ss_pred             HHHHHccccc-cCCCH------HHHHHHHHHHhccCcccccCC----------CCccceEEEchhhhhcccCCCCCeeEE
Confidence            1112332111 11222      346788899999999998431          135689999999999999999999999


Q ss_pred             EeCC-------------EEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCc
Q psy5736         160 FNGK-------------NIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYP  226 (346)
Q Consensus       160 f~g~-------------~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~  226 (346)
                      |+++             +++|+|+|||++||||||+|++  ..+++.+||+.|++.|+|+|.|++|.++.+..    . +
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~----~-~  288 (490)
T 3n71_A          216 FNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYID--FLHLSEERRRQLKKQYYFDCSCEHCQKGLKDD----L-F  288 (490)
T ss_dssp             EECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSC--SCSCHHHHHHHHHHHHSSCCCCHHHHHTTTHH----H-H
T ss_pred             ecCCccccccccccccceEEEEECCCCCCCCEEEEeecC--CCCCHHHHHHHHHCCCCeEeeCCCCCCCCccc----c-h
Confidence            9986             9999999999999999999998  56899999999999999999999999876321    1 1


Q ss_pred             cccccCCcCcCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy5736         227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQI  306 (346)
Q Consensus       227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~  306 (346)
                      .++.+    |                         ...+.+.+...++.+...++++.....+|++++|+..+++.|+..
T Consensus       289 ~~~~~----~-------------------------~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~  339 (490)
T 3n71_A          289 LAAKE----D-------------------------PKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQ  339 (490)
T ss_dssp             TCBCS----S-------------------------SCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             hhccc----C-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            11111    0                         112345667777788888888888888999999999999999999


Q ss_pred             hcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736         307 HELVVPPYKLASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       307 ~~~l~p~h~~~~~~~~~L~~~y~~~G~~~  335 (346)
                      .++|++.|+.+..+...|+..|...|+.-
T Consensus       340 ~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~  368 (490)
T 3n71_A          340 EPVFADTNLYVLRLLSIASEVLSYLQAYE  368 (490)
T ss_dssp             TTTBCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999863

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.97  E-value=4.3e-31  Score=262.81  Aligned_cols=263  Identities=17%  Similarity=0.254  Sum_probs=186.2

Q ss_pred             eeeeeCCCCCCCCCCCCcccceecccc---CCCceEEeee------------cCCceEEEeCCccccchhhhh-------
Q psy5736          18 RLISWRPDRGSWARNSARCTALTLLNE---HDDSLLLTGY------------DDGSLSVYRNYASHEHRLVTS-------   75 (346)
Q Consensus        18 ~~~~~~~~~~~w~~~~~~~t~l~~ine---~~~~lll~g~------------~dG~vri~r~~~sh~~~Lv~a-------   75 (346)
                      .+|+-.+|..+|+.|+.+|..++.+.+   +++.+++..+            .+.....+..+++|..++...       
T Consensus        72 ~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~  151 (433)
T 3qww_A           72 FYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQS  151 (433)
T ss_dssp             EESSHHHHHHHHHHHTTTHHHHHHSSTTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCHHHHHHHHH
T ss_pred             eecChhhhhhhhhHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccChHHHHHHHH
Confidence            344444566669999999999998864   2333433333            111222344566664443221       


Q ss_pred             -hhhhcccccccccccccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCC
Q psy5736          76 -FQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYP  154 (346)
Q Consensus        76 -~r~L~~~~y~~~~~~~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~P  154 (346)
                       +..|  ..|+.... ..++      .+.|+++++++++|+|+|...           +...+|.||||.+|+|||||.|
T Consensus       152 ~~~~l--~~~~~~~~-~~~~------~~~i~~~~~~~~~N~f~i~~~-----------~~~~~g~gl~p~~s~~NHsC~P  211 (433)
T 3qww_A          152 DIAAL--HQFYSKYL-EFPD------HSSLVVLFAQVNCNGFTIEDE-----------ELSHLGSAIFPDVALMNHSCCP  211 (433)
T ss_dssp             HHHHH--HHHHTTTC-CCCC------HHHHHHHHHHHHHHCEEEECT-----------TCCEEEEEECTTGGGSEECSSC
T ss_pred             HHHHH--HHHHhccc-CCCC------HHHHHHHHHHHcCCceecccC-----------CccceeEEecccccccCCCCCC
Confidence             1111  12222111 1122      234678889999999999743           2356899999999999999999


Q ss_pred             CeEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCccccccCCc
Q psy5736         155 AVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSND  234 (346)
Q Consensus       155 N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~C~~~  234 (346)
                      |+.+.|+|++++|+|+|||++||||||+|++  ..+++.+||+.|++.|+|.|.|.+|.++.+.  .       .+|.  
T Consensus       212 N~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~d--~-------~~~~--  278 (433)
T 3qww_A          212 NVIVTYKGTLAEVRAVQEIHPGDEVFTSYID--LLYPTEDRNDRLRDSYFFTCECRECTTKDKD--K-------AKVE--  278 (433)
T ss_dssp             SEEEEEETTEEEEEESSCBCTTCEEEECCSC--TTSCHHHHHHHHHHHHSCCCCSHHHHHCTTH--H-------HHTC--
T ss_pred             CceEEEcCCEEEEEeccCcCCCCEEEEeecC--CcCCHHHHHHHHhCcCCEEeECCCCCCCCcc--h-------hhhh--
Confidence            9999999999999999999999999999998  4689999999999999999999999987632  1       1222  


Q ss_pred             CcCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCc
Q psy5736         235 NCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPY  314 (346)
Q Consensus       235 ~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h  314 (346)
                      .|.-.   .                   ....+.+...+..+.+.+++..+.-..|++++|+..+++.|+...++|+|.|
T Consensus       279 ~~~~~---~-------------------~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~H  336 (433)
T 3qww_A          279 VRKLS---S-------------------PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSN  336 (433)
T ss_dssp             BCCCS---S-------------------CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTS
T ss_pred             hhhcC---C-------------------CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhc
Confidence            11100   0                   0112334444444555555544445678899999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHhCCcc
Q psy5736         315 KLASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       315 ~~~~~~~~~L~~~y~~~G~~~  335 (346)
                      +.+..+...|+..|...|+.-
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~  357 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWE  357 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHH
Confidence            999999999999999999764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.96  E-value=2e-29  Score=250.52  Aligned_cols=255  Identities=20%  Similarity=0.292  Sum_probs=178.1

Q ss_pred             eeeeeCCCCCCCCCCCCcccceecccc--CCCceEEeee-----------cCCceEEEeCCccccchhhhh----hhhh-
Q psy5736          18 RLISWRPDRGSWARNSARCTALTLLNE--HDDSLLLTGY-----------DDGSLSVYRNYASHEHRLVTS----FQAL-   79 (346)
Q Consensus        18 ~~~~~~~~~~~w~~~~~~~t~l~~ine--~~~~lll~g~-----------~dG~vri~r~~~sh~~~Lv~a----~r~L-   79 (346)
                      .+|+-.+|..+|+.|+.+|..++....  ..+.+++.++           ..+.+..+.++++|..++...    |+.+ 
T Consensus        70 ~yCs~~Cq~~~w~~Hk~eC~~~~~~~~~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~  149 (429)
T 3qwp_A           70 KYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLV  149 (429)
T ss_dssp             EESSHHHHHHTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHHHHHHHHHHH
T ss_pred             ccCChhhhhhhhhhhHHhhhhHHhcCccCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChhHHHHHHHHH
Confidence            445445677779999999999887743  2333333222           111122345566665443321    2111 


Q ss_pred             -cccccccccc-c--ccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCCC
Q psy5736          80 -TDTSFVNKSL-S--TVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPA  155 (346)
Q Consensus        80 -~~~~y~~~~~-~--~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~PN  155 (346)
                       ....|+.... .  ..++      .+.++++++++.+|+|+|...           +...+|.|+||.+|+|||||.||
T Consensus       150 ~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~N~f~i~~~-----------~~~~~g~~l~~~~s~~NHsC~PN  212 (429)
T 3qwp_A          150 MTFQHFMREEIQDASQLPP------AFDLFEAFAKVICNSFTICNA-----------EMQEVGVGLYPSISLLNHSCDPN  212 (429)
T ss_dssp             HHHHHHTTTTCCSGGGSCT------TCCHHHHHHHHHHHCEEEECT-----------TSCEEEEEECTTGGGCEECSSCS
T ss_pred             HHHHHHHhhhcCccccCCC------HHHHHHHHHHHHhcCcccccc-----------ccccceEEEchhhHhhCcCCCCC
Confidence             0112222110 0  0011      124678899999999999743           23568999999999999999999


Q ss_pred             eEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCccccccCCcC
Q psy5736         156 VTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDN  235 (346)
Q Consensus       156 ~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~C~~~~  235 (346)
                      +.+.|+|++++|+|+|||++|||||++|++  ..+++.+||+.|+++|+|.|.|++|.++....    .           
T Consensus       213 ~~~~~~~~~~~~~a~r~I~~GeEl~isY~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~----~-----------  275 (429)
T 3qwp_A          213 CSIVFNGPHLLLRAVRDIEVGEELTICYLD--MLMTSEERRKQLRDQYCFECDCFRCQTQDKDA----D-----------  275 (429)
T ss_dssp             EEEEEETTEEEEEECSCBCTTCEEEECCSC--SSCCHHHHHHHHHHHHCCCCCSHHHHHTTTHH----H-----------
T ss_pred             eEEEEeCCEEEEEEeeeECCCCEEEEEecC--CCCCHHHHHHHHhccCCeEeeCCCCCCCcccc----c-----------
Confidence            999999999999999999999999999998  57899999999999999999999999876311    0           


Q ss_pred             cCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH
Q psy5736         236 CGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK  315 (346)
Q Consensus       236 C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~  315 (346)
                          +....+       ..|.|           ....+       +...+...+|++++|++.+++.|+.+.++|+|.|+
T Consensus       276 ----~~~~~~-------~~~~~-----------~~~ll-------~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~  326 (429)
T 3qwp_A          276 ----MLTGDE-------QVWKE-----------VQESL-------KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI  326 (429)
T ss_dssp             ----HTCSCH-------HHHHH-----------HHHHH-------HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH
T ss_pred             ----ccccch-------hhhHH-----------HHHHH-------HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch
Confidence                000000       01322           11122       22222335688999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCcc
Q psy5736         316 LASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       316 ~~~~~~~~L~~~y~~~G~~~  335 (346)
                      .+..+...|+..|...|+.-
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~  346 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLE  346 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhhccHH
Confidence            99999999999999999753

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.50  E-value=8.1e-15  Score=134.65  Aligned_cols=68  Identities=26%  Similarity=0.448  Sum_probs=58.1

Q ss_pred             eeeeeccc-cccCCCCCCCCeEEEEe-CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCC
Q psy5736         137 VGVGIYPT-VSLFNHDCYPAVTRYFN-GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVE  214 (346)
Q Consensus       137 ~g~glyp~-~s~~NHSC~PN~~~~f~-g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~  214 (346)
                      ...++|+. ++++||||.||+...+. ++++.|+|+|||++|||||++|++.+  +.          .+.|.|.|.+|.+
T Consensus       168 ~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~--~~----------~~~f~C~C~~C~~  235 (247)
T 3rq4_A          168 RSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGF--FG----------EKNEHCECHTCER  235 (247)
T ss_dssp             TEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTS--SS----------GGGTTCCCHHHHH
T ss_pred             ccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchh--cC----------CCCCEEECCCCCC
Confidence            36788887 88999999999987765 68999999999999999999999853  32          4689999999987


Q ss_pred             CC
Q psy5736         215 NW  216 (346)
Q Consensus       215 ~~  216 (346)
                      +.
T Consensus       236 ~~  237 (247)
T 3rq4_A          236 KG  237 (247)
T ss_dssp             HT
T ss_pred             CC
Confidence            54

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=127.87  Aligned_cols=61  Identities=31%  Similarity=0.518  Sum_probs=51.9

Q ss_pred             ccccccCCCCCCCCeEEEEeCC-EEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCC
Q psy5736         142 YPTVSLFNHDCYPAVTRYFNGK-NIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVE  214 (346)
Q Consensus       142 yp~~s~~NHSC~PN~~~~f~g~-~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~  214 (346)
                      ...++++||||.||+.+.+.|. ++.++|+|||++|||||++|++.+  +.          .+.|.|.|.+|.-
T Consensus       203 g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~--~~----------~~~f~C~C~~c~c  264 (273)
T 3s8p_A          203 LGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF--FG----------ENNEFCECYTCER  264 (273)
T ss_dssp             ESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTT--TS----------GGGTTCCCHHHHH
T ss_pred             cchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchh--cC----------CCCeEEECCCCcC
Confidence            3456899999999999988875 999999999999999999999842  32          3579999999964

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.29  E-value=8.3e-13  Score=108.24  Aligned_cols=51  Identities=18%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             eeeeeccccccCCCCCCCCeEEEEe--CCEEEEEEeeccCCCCceeecccccc
Q psy5736         137 VGVGIYPTVSLFNHDCYPAVTRYFN--GKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       137 ~g~glyp~~s~~NHSC~PN~~~~f~--g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      .+..++|.++++||||.||+...+.  +.++.++|+|||++|||||++|++.+
T Consensus        57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~  109 (119)
T 1n3j_A           57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY  109 (119)
T ss_dssp             EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCC
T ss_pred             ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchh
Confidence            3677899999999999999999987  45899999999999999999999853

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=99.13  E-value=3.9e-11  Score=106.35  Aligned_cols=56  Identities=23%  Similarity=0.509  Sum_probs=42.5

Q ss_pred             ccccCCCCCCCCeEEEE---eC-CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736         144 TVSLFNHDCYPAVTRYF---NG-KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR  210 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f---~g-~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~  210 (346)
                      .++++||||.||+...+   +| .++.++|+|+|++|||||++|+..+  +..         .+.|.|.|.
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~--~~~---------~~~~~C~Cg  183 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPI--EDA---------SNKLPCNCG  183 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC------------------CCBCCCC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCch--hcC---------CCCceeECC
Confidence            46789999999999753   23 4799999999999999999999742  221         368999993

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=98.99  E-value=8e-11  Score=101.65  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeeccccc
Q psy5736         144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      .+.++||||.|||....  .+  .++.++|+|||++|||||++|++.
T Consensus       107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~  153 (166)
T 3f9x_A          107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDR  153 (166)
T ss_dssp             SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCC
T ss_pred             hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCC
Confidence            35788999999987653  33  479999999999999999999984

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=98.96  E-value=3.1e-10  Score=102.78  Aligned_cols=43  Identities=19%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeeccccc
Q psy5736         144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      .+.++||||.||+....  .+  .++.|+|+|||++|||||++|+..
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~  192 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFH  192 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSS
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCc
Confidence            35578999999998765  33  479999999999999999999974

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.96  E-value=3.4e-10  Score=103.22  Aligned_cols=55  Identities=24%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736         144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR  210 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~  210 (346)
                      .+.++||||.||+....  .+  .++.|+|+|||++|||||++|+..+  +.          ...|.|.|.
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~--~~----------~~~~~C~CG  223 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLEC--LG----------NGKTVCKCG  223 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCS--TT----------CTTCBCCCC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCc--CC----------CCCcEeECC
Confidence            46688999999998754  22  5899999999999999999998743  21          245888884

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.82  E-value=1e-09  Score=103.15  Aligned_cols=62  Identities=24%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             eeeccc-cccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceec
Q psy5736         139 VGIYPT-VSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKC  209 (346)
Q Consensus       139 ~glyp~-~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C  209 (346)
                      ...+.. +.++||||.||+...  +..      .++.++|+|+|++|||||++|++.+  +..        ....|.|.|
T Consensus       210 a~~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~--~~~--------~~~~~~C~C  279 (287)
T 3hna_A          210 ARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERF--WDI--------KGKLFSCRC  279 (287)
T ss_dssp             EEEEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHH--HHH--------HTTTCCCCC
T ss_pred             ccccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcc--ccc--------CCCcCEeeC
Confidence            334443 446799999999853  321      3899999999999999999998632  111        134799988


Q ss_pred             C
Q psy5736         210 R  210 (346)
Q Consensus       210 ~  210 (346)
                      .
T Consensus       280 G  280 (287)
T 3hna_A          280 G  280 (287)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.82  E-value=1.7e-09  Score=102.37  Aligned_cols=64  Identities=17%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             ccccCCCCCCCCeEEEEe-C-------CEEEEEEeeccCCCCceeecccccccCCCHH-HHHHHHHhhCCCceec
Q psy5736         144 TVSLFNHDCYPAVTRYFN-G-------KNIIVKALRPLKPKEVVAENYGLVFSRKHLI-DRQKVLSARYWFECKC  209 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f~-g-------~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~-~R~~~L~~~~~F~C~C  209 (346)
                      .+.++||||.||+..... +       .++.++|+|+|++|||||++|++.+  +... +.....+....|.|.|
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~--~~~~~~~~~~~k~~~~~~C~C  292 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGL--TGLESDAHDPSKISEMTKCLC  292 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-------------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCc--cccccccccccccCCCcEeeC
Confidence            466899999999986532 2       3799999999999999999998743  2221 1111122234578887

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.73  E-value=7.7e-09  Score=97.67  Aligned_cols=43  Identities=21%  Similarity=0.431  Sum_probs=36.9

Q ss_pred             ccccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeeccccc
Q psy5736         144 TVSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      .+.++||||.||+...  +.+      .++.++|+|+|++|||||++|+..
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~  265 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMK  265 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence            5678999999999875  322      489999999999999999999974

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.73  E-value=7e-09  Score=97.94  Aligned_cols=44  Identities=23%  Similarity=0.485  Sum_probs=36.9

Q ss_pred             ccccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeecccccc
Q psy5736         144 TVSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      .+.++||||.||+...  +.+      .++.++|+|+|++|||||++|+..+
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~  264 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK  264 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence            4568999999999864  322      3899999999999999999999853

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.70  E-value=4.7e-09  Score=98.70  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             ccccCCCCCCCCeEEEEe-----CCEEEEEEeeccCCCCceeecccc
Q psy5736         144 TVSLFNHDCYPAVTRYFN-----GKNIIVKALRPLKPKEVVAENYGL  185 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f~-----g~~~~v~a~r~I~~Geel~~~Y~~  185 (346)
                      .++++||||.|||...+.     +..+.|+|+|||++|||||++|+.
T Consensus       240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~  286 (293)
T 1h3i_A          240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGY  286 (293)
T ss_dssp             CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEET
T ss_pred             ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCC
Confidence            356889999999998873     233589999999999999999986

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.70  E-value=1.2e-08  Score=101.61  Aligned_cols=65  Identities=15%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             eeeeeeccccccCCCCCCCCeEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCcee
Q psy5736         136 YVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECK  208 (346)
Q Consensus       136 ~~g~glyp~~s~~NHSC~PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~  208 (346)
                      ..+.++.|.+.++||||.||+.+.|+++.+.++|.|+|++||||+++||+.    +    ...|...|||...
T Consensus       214 ~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~----~----n~~ll~~YGF~~~  278 (449)
T 3qxy_A          214 PNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM----A----NWQLIHMYGFVEP  278 (449)
T ss_dssp             CCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC----C----HHHHHHHHSCCCC
T ss_pred             CCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC----C----HHHHHHhCCCCCC
Confidence            357899999999999999999999999999999999999999999999972    2    3556668999874

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=102.38  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             eeeeeeccccccCCCCCCCCeEE-EEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736         136 YVGVGIYPTVSLFNHDCYPAVTR-YFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR  210 (346)
Q Consensus       136 ~~g~glyp~~s~~NHSC~PN~~~-~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~  210 (346)
                      ..+.+++|.+.++||||.|+... .+.++.+.++|.++|++||||+++||+.    +    ...|...|||.+.-.
T Consensus       264 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~----~----n~~Ll~~YGFv~~~N  331 (497)
T 3smt_A          264 RVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTR----S----NAEFVIHSGFFFDNN  331 (497)
T ss_dssp             SEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSC----C----HHHHHHHHSCCCTTC
T ss_pred             cccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCC----C----hHHHHHHCCCCCCCC
Confidence            35689999999999999996543 3456889999999999999999999972    2    345666899987543

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.69  E-value=7.1e-09  Score=96.02  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             ccccCCCCCCCCeEEEE-e----CCEEEEEEeeccCCCCceeeccccc
Q psy5736         144 TVSLFNHDCYPAVTRYF-N----GKNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f-~----g~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      .+.++||||.||+...+ .    +..+.++|+|||++|||||++|+..
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~  233 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD  233 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCC
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCc
Confidence            35789999999999886 2    2345999999999999999999974

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.66  E-value=1.5e-08  Score=86.07  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             cccCCCCCCC---CeEEEEeCCEEEEEEeeccCCCCceeeccccc
Q psy5736         145 VSLFNHDCYP---AVTRYFNGKNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       145 ~s~~NHSC~P---N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      +.++||||.|   |+...-.++++.++|+|||++||||++.|++.
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~  144 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE  144 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCc
Confidence            6789999999   99987778999999999999999999999974

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.63  E-value=1.8e-08  Score=94.70  Aligned_cols=44  Identities=18%  Similarity=0.365  Sum_probs=37.4

Q ss_pred             ccccCCCCCCCCeEEEE---eC--CEEEEEEeeccCCCCceeecccccc
Q psy5736         144 TVSLFNHDCYPAVTRYF---NG--KNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f---~g--~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      .+.++||||.||+....   ++  .++.|+|+|+|++|||||++|+..+
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~  253 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRY  253 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCcc
Confidence            45689999999998753   33  5899999999999999999999743

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=98.29  E-value=7.1e-07  Score=88.31  Aligned_cols=65  Identities=22%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             eeeeccccccCCCCCCCCe---EEEEe--------CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCc
Q psy5736         138 GVGIYPTVSLFNHDCYPAV---TRYFN--------GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFE  206 (346)
Q Consensus       138 g~glyp~~s~~NHSC~PN~---~~~f~--------g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~  206 (346)
                      +.++.|.+.++||+|.||.   .+.+.        ++.++++|.++|++||||+++||+.   .+.    ..|...|||.
T Consensus       183 ~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~---~~N----~~LL~~YGFv  255 (440)
T 2h21_A          183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN---KSN----AELALDYGFI  255 (440)
T ss_dssp             CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTT---CCH----HHHHHHSSCC
T ss_pred             ceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCC---CCH----HHHHHhCCCC
Confidence            5799999999999999974   33322        3579999999999999999999973   122    3466689997


Q ss_pred             eec
Q psy5736         207 CKC  209 (346)
Q Consensus       207 C~C  209 (346)
                      ..-
T Consensus       256 ~~~  258 (440)
T 2h21_A          256 EPN  258 (440)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            653

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.93  E-value=6.3e-06  Score=69.99  Aligned_cols=44  Identities=9%  Similarity=0.123  Sum_probs=38.9

Q ss_pred             ccccCCCCCCC---CeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736         144 TVSLFNHDCYP---AVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       144 ~~s~~NHSC~P---N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      -+.++||+|.+   |+...-.++++.++|+|+|++||||++.|++.|
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y  143 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDY  143 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHH
Confidence            46789999976   999888899999999999999999999999855

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=69.11  Aligned_cols=44  Identities=16%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             ccccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736         144 TVSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       144 ~~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      -+.++||+|.   +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus       101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y  147 (170)
T 3ep0_A          101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH  147 (170)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred             eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence            3578999997   8998888899999999999999999999999865

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=97.61  E-value=3.2e-05  Score=68.28  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             cccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736         145 VSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       145 ~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      +.++||+|.   +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus       132 mRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y  177 (196)
T 3dal_A          132 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF  177 (196)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             EEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence            678999997   7999888899999999999999999999999854

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=97.46  E-value=6.8e-05  Score=63.65  Aligned_cols=43  Identities=12%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             cccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736         145 VSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       145 ~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      +.++||+|.   +|+...-.++++.++|+|+|++||||.+.|++.|
T Consensus        97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y  142 (152)
T 3ihx_A           97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY  142 (152)
T ss_dssp             GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred             eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence            678999998   7999988899999999999999999999999854

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=97.24  E-value=0.00016  Score=65.38  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=39.6

Q ss_pred             ccccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736         144 TVSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       144 ~~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      -+.++||+|.   +|+...-.++.+.++|+|+|++||||.+.|++.|
T Consensus       140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y  186 (237)
T 3ray_A          140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY  186 (237)
T ss_dssp             GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence            3579999997   6999888899999999999999999999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.76  E-value=0.0019  Score=58.11  Aligned_cols=56  Identities=11%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +|++++|.|||.++++.+..+.-..     |...|+++.+.  +++.++++|+.||.|++|..
T Consensus        41 vg~D~tV~iWd~~tg~~~~~~~~~~-----~~~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~   96 (318)
T 4ggc_A           41 VALDNSVYLWSASSGDILQLLQMEQ-----PGEYISSVAWI--KEGNYLAVGTSSAEVQLWDV   96 (318)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCS-----TTCCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecC-----CCCeEEEEEEC--CCCCEEEEEECCCcEEEeec
Confidence            4789999999999998777665333     56789999864  35678899999999999953

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.51  E-value=0.0035  Score=59.17  Aligned_cols=54  Identities=9%  Similarity=-0.023  Sum_probs=45.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..|..+      |...|++|.|-  +|..++++|+.||.||+|..
T Consensus       288 s~D~~V~iwd~~~~~~~~~~~~g------H~~~V~~v~fS--pdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKIFKQA------HSFAITEVTIS--PDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEEETTS------SSSCEEEEEEC--TTSCEEEEEETTSEEEEEEC
T ss_pred             cCCCEEEEEECCCCcEEEEecCc------ccCCEEEEEEC--CCCCEEEEEeCCCeEEEEEc
Confidence            46899999999999988877544      67789999973  57888999999999999965

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.49  E-value=0.0033  Score=60.10  Aligned_cols=56  Identities=11%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +|++++|.|||.++|+.+..+.-..     |...|++|.|.  +++.++++|+.||.|++|..
T Consensus       121 vgld~tV~lWd~~tg~~~~~~~~~~-----~~~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~  176 (420)
T 4gga_A          121 VALDNSVYLWSASSGDILQLLQMEQ-----PGEYISSVAWI--KEGNYLAVGTSSAEVQLWDV  176 (420)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCS-----TTCCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecC-----CCCcEEEEEEC--CCCCEEEEEECCCeEEEEEc
Confidence            5889999999999998766554332     56789999984  36788899999999999953

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.44  E-value=0.0046  Score=55.44  Aligned_cols=54  Identities=19%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA   66 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~   66 (346)
                      -+|+|.|||..+++.+..+.       -|...|++|.+.  ++..++++|+.||.|++|+.++
T Consensus       262 ~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~l~~s--pdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          262 AQNQLVIWKYPTMAKVAELK-------GHTSRVLSLTMS--PDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             TTCCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSC
T ss_pred             CCCEEEEEECCCCcEEEEEc-------CCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCC
Confidence            57899999999999998874       267789999864  4677889999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.00  E-value=0.0086  Score=57.50  Aligned_cols=55  Identities=9%  Similarity=0.041  Sum_probs=43.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||++++.........     .|...|++|.| ++.+..++++|+.||.|++|.
T Consensus       139 s~dg~i~lWd~~~~~~~~~~~~~-----gH~~~V~~l~f-~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          139 SKGGDIMLWNFGIKDKPTFIKGI-----GAGGSITGLKF-NPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             ETTSCEEEECSSCCSCCEEECCC-----SSSCCCCEEEE-CSSCTTEEEEECSSSCEEEEE
T ss_pred             eCCCEEEEEECCCCCceeEEEcc-----CCCCCEEEEEE-eCCCCCEEEEEeCCCEEEEee
Confidence            36899999999988665544322     27788999996 445677889999999999994

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.82  E-value=0.013  Score=55.94  Aligned_cols=54  Identities=19%  Similarity=0.308  Sum_probs=45.4

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA   66 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~   66 (346)
                      -+|+|.|||+.+++.+..+.       -|...|++|.+-  +++.++++|+.||.|++|+.++
T Consensus       342 ~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~l~~s--pdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAELK-------GHTSRVLSLTMS--PDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSC
T ss_pred             CCCEEEEEECCCCcEEEEEc-------CCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCC
Confidence            47899999999999998874       267789999863  4677889999999999998774

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.46  E-value=0.023  Score=51.27  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCC--CCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGS--WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~--w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.+++..+..+......  ...|...|++|.+-  ++..++++|+.||.|++|+.
T Consensus       274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS--ADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC--TTSSEEEEEETTSCEEEEEE
T ss_pred             cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEeC
Confidence            45788999999888777766543221  22366788998863  46678899999999999963

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.027  Score=53.37  Aligned_cols=61  Identities=7%  Similarity=0.010  Sum_probs=46.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCC------------------------------CCCCCCCCcccceeccccCCCceEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDR------------------------------GSWARNSARCTALTLLNEHDDSLLLT   52 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~------------------------------~~w~~~~~~~t~l~~ine~~~~lll~   52 (346)
                      |.+|+|.|||..+++.+..+....                              .....|...|+++.+....+..++++
T Consensus       347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s  426 (437)
T 3gre_A          347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA  426 (437)
T ss_dssp             GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred             CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence            568999999999998776665321                              00122778899999988877889999


Q ss_pred             eecCCceEEEe
Q psy5736          53 GYDDGSLSVYR   63 (346)
Q Consensus        53 g~~dG~vri~r   63 (346)
                      |+.||.|++|+
T Consensus       427 ~~~dG~I~iw~  437 (437)
T 3gre_A          427 CDNSGLIGIFQ  437 (437)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCceEEEeC
Confidence            99999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.76  E-value=0.047  Score=50.98  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             cccce-EEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLK-EGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~-~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+ |.|||..+++.+..|..+.     |...|+++.+-  ++..++++|+.||.|++|..-
T Consensus       214 s~d~~~v~iwd~~~~~~~~~~~~g~-----h~~~v~~~~~s--~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVREFRRGL-----DRADVVDMKWS--TDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEEEEECTT-----CCSCEEEEEEC--TTSCEEEEEETTCEEEEEESS
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCC-----CCCcEEEEEEC--CCCCEEEEEECCCEEEEEEcc
Confidence            46888 9999999999998886442     55789998863  467788999999999999654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.59  E-value=0.044  Score=51.25  Aligned_cols=54  Identities=11%  Similarity=-0.130  Sum_probs=43.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||.++++.+..+        .|...|++|.| ++.+..++++|+.||.|++|..-
T Consensus       289 s~D~~i~iwd~~~~~~~~~~--------~H~~~V~~vaf-sP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          289 SEDCTVAVLDADFSEVFRDL--------SHRDFVTGVAW-SPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ETTSCEEEECTTSCEEEEEC--------CCSSCEEEEEE-CSSSTTEEEEEETTSCEEEEECC
T ss_pred             eCCCEEEEEECCCCcEeEEC--------CCCCCEEEEEE-eCCCCCEEEEEcCCCeEEEEECC
Confidence            45799999999998766543        26778999985 55567888999999999999654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.54  E-value=0.067  Score=50.24  Aligned_cols=59  Identities=17%  Similarity=0.311  Sum_probs=46.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++.+..|....+  ..|...+.++.+ +..+..++++|+.||.|++|..
T Consensus       177 s~D~~i~~wd~~~~~~~~~~~~~~~--~~h~~~v~~~~~-~~~~~~~l~sgs~D~~v~~wd~  235 (380)
T 3iz6_a          177 SGDQTCVLWDVTTGQRISIFGSEFP--SGHTADVLSLSI-NSLNANMFISGSCDTTVRLWDL  235 (380)
T ss_dssp             CTTSCEEEECTTTCCEEEEECCCSS--SSCCSCEEEEEE-CSSSCCEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEcCCCcEEEEeecccC--CCCccCeEEEEe-ecCCCCEEEEEECCCeEEEEEC
Confidence            4689999999999999888754332  236678888875 4566788899999999999954

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.39  E-value=0.046  Score=52.09  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=42.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||++++.....+.       .|...|+++.+.  +++.++++|+.||.|++|.
T Consensus       127 s~Dg~i~vwd~~~~~~~~~l~-------~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          127 SEDATIKVWDYETGDFERTLK-------GHTDSVQDISFD--HSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             ESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEe-------ccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence            468999999999998776663       256789999874  4567889999999999994

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.39  E-value=0.03  Score=51.27  Aligned_cols=55  Identities=13%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCce--eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSR--LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~--~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++..  +..+.       .|...|+++.+..+.+..++++|+.||.|++|..
T Consensus        32 s~D~~v~lwd~~~~~~~~~~~l~-------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A           32 SSDRSVKIFDVRNGGQILIADLR-------GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             eCCCeEEEEEecCCCcEEEEEEc-------CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            4689999999988753  33332       2677899999876556778899999999999954

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.36  E-value=0.031  Score=52.35  Aligned_cols=57  Identities=12%  Similarity=0.143  Sum_probs=43.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++.+..+.....   .|...|++|.+.  ++..++++|+.||.|++|..
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~---~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKY---EHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEE---CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred             ECCCEEEEEeccCCCceeEeecccc---CCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEEC
Confidence            4579999999999876654332111   267789999874  46778899999999999953

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.35  E-value=0.064  Score=50.18  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=43.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..|.       .|...|+++.+ +.++..++++|+.||.|++|..
T Consensus       146 s~d~~i~iwd~~~~~~~~~~~-------~h~~~V~~~~~-~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          146 SKDICIKVWDLAQQVVLSSYR-------AHAAQVTCVAA-SPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEE-CSSCTTEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEECCCCcEEEEEc-------CcCCceEEEEe-cCCCCCceeeeccccccccccc
Confidence            468999999999998887774       25678999886 4456678899999999999953

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.30  E-value=0.066  Score=48.55  Aligned_cols=52  Identities=12%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||.++++.+..|..       |...|++|.+.  ++..++++|+.||.|++|.
T Consensus        74 s~d~~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~--~~~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVH--PTKPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEEC--SSSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEEEc--CCCCEEEEECCCCeEEEEE
Confidence            4589999999999988877742       56789999864  3567889999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=93.98  E-value=0.076  Score=50.67  Aligned_cols=56  Identities=16%  Similarity=0.269  Sum_probs=47.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.++++.+..|..       |...|+++.+....+..++++|+.||.+++|..-
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEG-------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             eCCCCEEEEECCCCcEEEEECC-------CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            5689999999999988877742       5678999998877778899999999999999543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.91  E-value=0.043  Score=48.94  Aligned_cols=55  Identities=9%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             cccceEEEEecCCCc----eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS----RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~----~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.    .+..+.       .|...|++|.+....+..++++|+.||.|++|..
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~   88 (351)
T 3f3f_A           30 SSDQHIKVFKLDKDTSNWELSDSWR-------AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE   88 (351)
T ss_dssp             ETTSEEEEEEECSSSCCEEEEEEEE-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             eCCCeEEEEECCCCCCcceecceec-------cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence            457999999999764    233332       2667899999876546788899999999999954

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.91  E-value=0.059  Score=48.70  Aligned_cols=55  Identities=7%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+.+  +.+..+.       .|...|+++.+-...+..++++|+.||.|++|..
T Consensus        28 s~D~~v~iw~~~~~~~~~~~~l~-------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B           28 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             ETTSCEEEEEBCSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             eCCCEEEEEecCCCCcEEEEEEc-------cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            56899999999754  3344442       3677899999865555778899999999999964

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.91  E-value=0.08  Score=49.93  Aligned_cols=54  Identities=15%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecccc----CCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNE----HDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine----~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||..+++.+..+.       .|...|+++.+.+.    ++..++++|+.||.|++|+
T Consensus       329 s~D~~v~iwd~~~~~~~~~l~-------~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          329 SKDRGVLFWDKKSGNPLLMLQ-------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEEC-------CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            568999999999998887663       25678999988763    3578899999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.83  E-value=0.11  Score=47.16  Aligned_cols=57  Identities=11%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++..+..+..-.    .|...|+++.+..  +..++++|+.||.|++|..-
T Consensus       135 ~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  191 (366)
T 3k26_A          135 SKDHALRLWNIQTDTLVAIFGGVE----GHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRIN  191 (366)
T ss_dssp             ETTSCEEEEETTTTEEEEEECSTT----SCSSCEEEEEECT--TSSEEEEEETTSCEEEEESC
T ss_pred             eCCCeEEEEEeecCeEEEEecccc----cccCceeEEEECC--CCCEEEEecCCCCEEEEECC
Confidence            458999999999998888775322    2667899998754  56678999999999999654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.78  E-value=0.12  Score=48.37  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||..++..+..+..-..   .|...|++|.+-  ++..++++|+.||.|++|..
T Consensus       317 ~~dg~i~vwd~~~~~~~~~~~~~~~---~h~~~v~~l~~s--~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          317 YSNGDCYVWDTLLAEMVLNLGTLQN---SHEGRISCLGLS--SDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCSCS---SCCCCCCEEEEC--SSSSEEEEECTTSCEEEEEC
T ss_pred             ECCCCEEEEECCCCceEEEEecccC---CCCCceEEEEEC--CCCCEEEEeeCCCCEEEEec
Confidence            3578999999999887766633221   377889999864  46778899999999999964

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.67  E-value=0.099  Score=47.76  Aligned_cols=53  Identities=15%  Similarity=0.309  Sum_probs=43.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..|.       .|...|+++.+-  ++..++++|+.||.|++|..
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFV-------GHKSDVMSVDID--KKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEC--TTSCEEEEEETTSCEEEEET
T ss_pred             eCCCEEEEEECCCCCeeEEEc-------cCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEC
Confidence            568999999999998887774       256789998863  35678899999999999953

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.64  E-value=0.11  Score=48.48  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++.+..|..       |...++++.+.-..+..++++|+.||.|++|..
T Consensus       173 s~D~~v~lwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          173 SGDGTCALWDVESGQLLQSFHG-------HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eCCCcEEEEeCCCCeEEEEEcC-------CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            4579999999999988887742       556788888655456688899999999999954

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.59  E-value=0.11  Score=47.14  Aligned_cols=56  Identities=11%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.....+..+      +...+..+.+....+..++++|+.||.|++|..
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~  215 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECC------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred             eCCCeEEEEECCCCCccceeccC------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence            56899999999887665555433      334577777666567789999999999999954

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.47  E-value=0.096  Score=47.36  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++..+..+        .|...|+++.+....+..++++|+.||.|++|..
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIA--------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEE--------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             cCCCcEEEEEcCCCCceeec--------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            45899999999999766543        2567899999876677888899999999999954

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.41  E-value=0.12  Score=48.78  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.+++..+..+.........|...|+++.+.  ++..++++|+.||.|++|..-
T Consensus       226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--RDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEECC
Confidence            4689999999999987777654333223477789998864  356778999999999999643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.39  E-value=0.12  Score=49.08  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..+.....    |...|+++.+    +..++++|+.||.|++|..-
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~v~~~~~----~~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQF----NKNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTS----CSSCEEEEEE----CSSEEEEEETTSEEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCC----CCCCEEEEEE----CCCEEEEEeCCCeEEEEECC
Confidence            4589999999999988888865442    6678999887    35788999999999999644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.37  E-value=0.13  Score=46.62  Aligned_cols=54  Identities=20%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..+.       .|...|+++.+.. .+..++++|+.||.|++|..
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~-~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYV-------GHGNAINELKFHP-RDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEE-------SCCSCEEEEEECS-SCTTEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEchhceEeeeec-------CCCCcEEEEEECC-CCCCEEEEEeCCCeEEEEEe
Confidence            468999999999998887774       2567899998653 46678899999999999954

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.35  E-value=0.13  Score=47.28  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..+...+     +...|+++.+-  ++..++++|+.||.|++|...
T Consensus       245 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s--~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          245 SDDATCRLFDLRADQELMTYSHDN-----IICGITSVSFS--KSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTT-----CCSCEEEEEEC--TTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCcEEEEECCCCcEEEEEccCC-----cccceEEEEEC--CCCCEEEEECCCCeEEEEEcc
Confidence            468999999999998887775333     34468888753  467788999999999999643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.25  E-value=0.2  Score=48.85  Aligned_cols=49  Identities=10%  Similarity=-0.050  Sum_probs=46.1

Q ss_pred             HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      ....|++++|+.++++.|+.+.++++|.||.+......|+..|...|+.
T Consensus       339 y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~  387 (429)
T 3qwp_A          339 CINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF  387 (429)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH
Confidence            3567999999999999999999999999999999999999999999975

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.18  E-value=0.23  Score=48.66  Aligned_cols=50  Identities=10%  Similarity=-0.120  Sum_probs=46.6

Q ss_pred             HHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         285 EQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       285 ~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      -....|++++|+.++++.|+.+.+++.|.|+.+......|+..|...|+.
T Consensus       349 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~  398 (433)
T 3qww_A          349 VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK  398 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence            34567999999999999999999999999999999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.05  E-value=0.077  Score=50.71  Aligned_cols=56  Identities=20%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.....+....    .|...|+++.|-  +++.++++|+.||.|++|..
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s--pdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSL----PHRHPVNAACFS--PDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCC----BCSSCEEECCBC--TTSSEEEEEESSSCEEEEES
T ss_pred             cCcceeeEEecccccccceEEEee----eccccccceeEC--CCCCeeEEEcCCCEEEEEEC
Confidence            468999999998876555443333    367789998863  46778899999999999954

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.91  E-value=0.1  Score=47.57  Aligned_cols=55  Identities=7%  Similarity=0.033  Sum_probs=42.4

Q ss_pred             cccceEEEEecCC--CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHIT--GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~--~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.+.  +..+..+.       .|...|++|.+....+..++++|+.||.|++|..
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A           30 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ECCCcEEEEecCCCcceeeeEec-------CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            3589999999984  44444442       2667899999876666788899999999999953

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.88  E-value=0.11  Score=47.48  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++.  .+..+.       .|...|+++.+....+..++++|+.||.|++|..
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~-------~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHA-------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEEC-------CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             ECCCEEEEEECCCCcceEEEEcc-------CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            468999999998873  333332       2567899998754444678899999999999953

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.80  E-value=0.11  Score=47.63  Aligned_cols=55  Identities=9%  Similarity=0.162  Sum_probs=40.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||+..++....+.-.     .|...|+++.+-  ++..++++|+.||.|++|..
T Consensus        55 s~D~~v~vW~~~~~~~~~~~~l~-----gh~~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           55 SLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVSVDIS--HTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEEC--SSSSEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEECCCCCeeeeeeec-----cCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEEC
Confidence            56899999999877543333212     266788888853  45678899999999999954

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.74  E-value=0.17  Score=46.56  Aligned_cols=53  Identities=11%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..|.       .|...|+++.+-  ++...+++|+.||.|++|..
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFV-------GHQSEVYSVAFS--PDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEE-------CCCSCEEEEEEC--SSTTEEEEEETTSCEEEEES
T ss_pred             cCCCcEEEEECCCCcEEEEEc-------CCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEec
Confidence            468999999999998887764       256789998863  35667889999999999964

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=92.72  E-value=0.11  Score=46.74  Aligned_cols=55  Identities=22%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++  .+..+.       .|...|+++.+....+..++++|+.||.|++|..
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~-------~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~  130 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF  130 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred             cCCCEEEEEEcCCCceEEEEEee-------cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence            468999999998774  333331       2566799998765444678899999999999954

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=92.72  E-value=0.15  Score=48.93  Aligned_cols=54  Identities=13%  Similarity=-0.024  Sum_probs=43.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++..+..|..+      |...|+++.+.   +..++++|+.||.|++|..-
T Consensus       217 ~~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          217 DRDEHIKISHYPQCFIVDKWLFG------HKHFVSSICCG---KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             ETTSCEEEEEESCTTCEEEECCC------CSSCEEEEEEC---STTEEEEEESSSEEEEEETT
T ss_pred             cCCCcEEEEECCCCceeeeeecC------CCCceEEEEEC---CCCEEEEEeCCCeEEEEECC
Confidence            46799999999999877765433      55789999876   77888999999999999643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.67  E-value=0.14  Score=48.33  Aligned_cols=55  Identities=15%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+....     |...|+++.+ + ++..++++|+.||.|++|..
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~-s-~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSP-----RHGAVSSICI-D-EECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCG-----GGCCEEEEEE-C-TTSCEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCC-----CCCceEEEEE-C-CCCCEEEEEcCCCeEEEEEc
Confidence            457999999999998888776431     5568999996 3 34778899999999999954

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.66  E-value=0.13  Score=47.58  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      |.+|+|.|||.+++...+...-..    .|...|+++.+-  ++..++++|+.||.+++|.
T Consensus        35 ~~D~~i~iw~~~~~~~~~~~~~~~----~h~~~v~~~~~s--p~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           35 GGDRRIRIWGTEGDSWICKSVLSE----GHQRTVRKVAWS--PCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECS----SCSSCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEEcCCCcceeeeeecc----ccCCcEEEEEEC--CCCCEEEEEECCCcEEEEE
Confidence            568999999999886543322111    267789999874  3677889999999999994

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.66  E-value=0.17  Score=48.05  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++.+..+.       .|...|++|.+    ++.++++|+.||.|++|..
T Consensus       150 ~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          150 LRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY----DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             ESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred             eCCCeEEEEeCCCCeEEEEEc-------CCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence            457999999999998877764       25678999987    6678899999999999954

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=92.65  E-value=0.18  Score=46.24  Aligned_cols=55  Identities=22%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.++++.+..+...      +...++++.+.  ++..++++|+.||.|++|..-
T Consensus       146 s~dg~i~~wd~~~~~~~~~~~~~------~~~~i~~~~~~--pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          146 DNRGTIGFQSYEDDSQYIVHSAK------SDVEYSSGVLH--KDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             ETTCCEEEEESSSSCEEEEECCC------SSCCCCEEEEC--TTSCEEEEECTTSCEEEEESS
T ss_pred             eCCCcEEEEECCCCcEEEEEecC------CCCceEEEEEC--CCCCEEEEEcCCCEEEEEECC
Confidence            56899999999999876554322      34568888864  367788899999999999543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=92.62  E-value=0.17  Score=48.22  Aligned_cols=52  Identities=17%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++.+..+.       .|...|+++.+..   +.++++|+.||.|++|..
T Consensus       139 s~dg~i~vwd~~~~~~~~~~~-------~h~~~V~~l~~~~---~~~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          139 ADDKMIRVYDSINKKFLLQLS-------GHDGGVWALKYAH---GGILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECS---TTEEEEEETTSCEEEEET
T ss_pred             cCCCcEEEEECCCCcEEEEEe-------CCCcCEEEEEEcC---CCEEEEEeCCCCEEEEEC
Confidence            468999999999998888774       2667899999843   238899999999999954

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=92.56  E-value=0.19  Score=46.20  Aligned_cols=54  Identities=15%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++..+..|..       |...|+++.+.  ++..++++|+.||.|++|..-
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~-------h~~~v~~v~~~--p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTG-------HESDINAICFF--PNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECC-------CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred             eCCCcEEEEECCCCeeEEEEcC-------CcCCEEEEEEc--CCCCEEEEEcCCCcEEEEECC
Confidence            4689999999999988777642       55679998864  356788999999999999643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.53  E-value=0.18  Score=44.77  Aligned_cols=56  Identities=14%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             cccceEEEEecCCCc---------eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGS---------RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~---------~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.+++.         .+..+.       .|...|+++.+.......++++|+.||.|++|..-
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence            468999999999873         343332       25678999997654447788999999999999643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.48  E-value=0.14  Score=47.04  Aligned_cols=55  Identities=16%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCC-cccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSA-RCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~-~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      |.+|+|.|||..++.  .+.....      .|.. .|+++.+....+..++++|+.||.|++|.
T Consensus       268 ~~dg~v~iw~~~~~~~~~~~~~~~------~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          268 GADGVLAVYEEVDGEWKVFAKRAL------CHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEESC------TTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             eCCCEEEEEEcCCCceEEEecccc------ccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence            568999999998773  2322211      2444 78898876545677889999999999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.46  E-value=0.18  Score=47.39  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=43.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      |.+|+|.|||.+++.....+...      |...|+++.+..  +..++++|+.||.|++|..
T Consensus       110 ~~d~~v~lw~~~~~~~~~~~~~~------~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A          110 ALERNVYVWNADSGSVSALAETD------ESTYVASVKWSH--DGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             EETTEEEEEETTTCCEEEEEECC------TTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred             ECCCeEEEeeCCCCcEeEeeecC------CCCCEEEEEECC--CCCEEEEECCCCeEEEEEC
Confidence            57899999999999877666533      456799998754  6678899999999999954

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=92.45  E-value=0.32  Score=48.35  Aligned_cols=49  Identities=14%  Similarity=-0.013  Sum_probs=46.2

Q ss_pred             HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      ....|++++|+.++++.|+.+.+++.|.||.+..+...|+..|...|+.
T Consensus       361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~  409 (490)
T 3n71_A          361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI  409 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence            4567999999999999999999999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.41  E-value=0.15  Score=47.18  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=44.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||..++.....+....     |...|+++.+ ++.+..++++|+.||.|++|..-
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           93 SKGGDIILWDYDVQNKTSFIQGMG-----PGDAITGMKF-NQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             EBTSCEEEEETTSTTCEEEECCCS-----TTCBEEEEEE-ETTEEEEEEEEETTTEEEEEETT
T ss_pred             cCCCeEEEEeCCCcccceeeecCC-----cCCceeEEEe-CCCCCCEEEEEeCCCEEEEEECC
Confidence            357999999999988877765322     6778999996 33466788999999999999544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.33  E-value=0.21  Score=47.54  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=37.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+..       |...|+++.+    ++.++++|+.||.|++|..
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEG-------HEELVRCIRF----DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC-------CSSCEEEEEC----CSSEEEEEETTSCEEEEEH
T ss_pred             eCCCeEEEEECCCCCEEEEEeC-------CcCcEEEEEe----cCCEEEEEeCCCcEEEEEC
Confidence            4577888888888877776642       4556788776    5667788888888888853

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.14  E-value=0.23  Score=46.19  Aligned_cols=54  Identities=17%  Similarity=0.327  Sum_probs=43.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..|.       .|...|+++.+.  ++..++++|+.||.+++|..-
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~-------~h~~~v~~v~~~--p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFE-------THESDVNSVRYY--PSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEec-------CCCCCeEEEEEe--CCCCEEEEEeCCCeEEEEECC
Confidence            468999999999998877763       256789998864  356788999999999999643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.11  E-value=0.21  Score=46.77  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=43.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..+...     .|...|+++.+..  ++.++++|+.||.|++|..
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~  205 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTLGPD-----VHPDTIYSVDWSR--DGALICTSCRDKRVRVIEP  205 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEECTT-----TCCSCEEEEEECT--TSSCEEEEETTSEEEEEET
T ss_pred             cCCCEEEEEECCCCCccEEEecC-----CCCCceEEEEECC--CCCEEEEEecCCcEEEEeC
Confidence            46899999999999888777411     1567899998653  6678889999999999954

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.08  E-value=0.17  Score=46.74  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=41.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.+++...+...-.     .|...|++|.+-  +++.++++|+.||.|++|+.+
T Consensus       169 s~d~~i~~w~~~~~~~~~~~~~~-----~h~~~v~~l~~s--p~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          169 SYDDTVKLYREEEDDWVCCATLE-----GHESTVWSLAFD--PSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEEE
T ss_pred             eCCCcEEEEEecCCCEEEEEEec-----CCCCceEEEEEC--CCCCEEEEEeCCCeEEEeccc
Confidence            45799999999887544322211     266789999864  356788999999999999754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.95  E-value=0.24  Score=45.39  Aligned_cols=53  Identities=28%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+..       |...|++|.+-  ++..++++|+.||.|++|..
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~s--pd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEG-------HAMPIRSLTFS--PDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------CSSCCCEEEEC--TTSCEEEEECTTSCEEEEET
T ss_pred             cCCCeEEEEECCCCcEEEEEcc-------cCCceeEEEEc--CCCCEEEEEcCCCeEEEEEC
Confidence            4589999999999988877742       55678998864  36678899999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=91.82  E-value=0.27  Score=44.05  Aligned_cols=54  Identities=17%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+++|.|||..+++.+..+..       |...|++|.+-  +++.++++|+.||.|++|..-
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~-------h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIG-------HTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEEC--TTSSEEEEEETTCEEEEEETT
T ss_pred             cCCCEEEEEECCCCceeeEecC-------CCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEec
Confidence            4578999999999988877642       55679998863  467788999999999999543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=91.80  E-value=0.092  Score=48.37  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=39.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.....+.........|...|+++.+-  ++..++++|+.||.|++|..
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~  105 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QENCFAISSSWDKTLRLWDL  105 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SSTTEEEEEETTSEEEEEET
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCCCEEEEEcCCCcEEEEEC
Confidence            4689999999976532111100000012366789998864  46678899999999999954

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=91.77  E-value=0.28  Score=46.08  Aligned_cols=55  Identities=7%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             cccceEEEEecCCCce-----------eeeeCCCCCCCCCCC------------CcccceeccccCCCceEEeeecCCce
Q psy5736           3 GLFLKEGIWDHITGSR-----------LISWRPDRGSWARNS------------ARCTALTLLNEHDDSLLLTGYDDGSL   59 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~-----------~~~~~~~~~~w~~~~------------~~~t~l~~ine~~~~lll~g~~dG~v   59 (346)
                      +.+|+|.|||++++.+           +..+..       |.            ..|++|.+....+...+++|+.||.|
T Consensus        47 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i  119 (447)
T 3dw8_B           47 DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-------HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI  119 (447)
T ss_dssp             ETTSEEEEEEECC-----CCCCCCEEEEEEEEC-------CCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred             cCCCeEEEEEecCCCCCCcccccceeEeccccc-------ccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence            4689999999998873           444432       44            56999998765444788999999999


Q ss_pred             EEEeC
Q psy5736          60 SVYRN   64 (346)
Q Consensus        60 ri~r~   64 (346)
                      ++|..
T Consensus       120 ~iw~~  124 (447)
T 3dw8_B          120 KLWKI  124 (447)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99953

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=91.73  E-value=0.28  Score=44.23  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+..       |...|+++.+..  +..++++|+.||.|++|..
T Consensus        51 ~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           51 SKDSSASVWYSLNGERLGTLDG-------HTGTIWSIDVDC--FTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             ESSSCEEEEETTTCCEEEEECC-------CSSCEEEEEECT--TSSEEEEEETTTEEEEEET
T ss_pred             eCCCEEEEEeCCCchhhhhhhh-------cCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEC
Confidence            4589999999999988887742       556899998743  5678899999999999954

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=91.70  E-value=0.24  Score=44.67  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             cccceEEEEecCCCc-eeeeeCCCCCCCCCCCCcccceeccc----cCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGS-RLISWRPDRGSWARNSARCTALTLLN----EHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~-~~~~~~~~~~~w~~~~~~~t~l~~in----e~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.+++. .+..+.       .|...|+++.++.    ..+..++++|+.||.|++|..-
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~  147 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVK-------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR  147 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEEC-------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred             cCCCeEEEEeCCCCCccEEEEE-------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence            458999999999887 555553       2667899998775    2567788999999999999544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.55  E-value=0.21  Score=45.03  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=40.3

Q ss_pred             cccceEEEEecCC-Ccee-eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHIT-GSRL-ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~-~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++ +..+ ..+.       .|...|+++.+..  +..++++|+.||.|++|..
T Consensus        61 ~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~  115 (368)
T 3mmy_A           61 SWANDVRCWEVQDSGQTIPKAQQ-------MHTGPVLDVCWSD--DGSKVFTASCDKTAKMWDL  115 (368)
T ss_dssp             ETTSEEEEEEECTTSCEEEEEEE-------ECSSCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             CCCCcEEEEEcCCCCceeEEEec-------cccCCEEEEEECc--CCCEEEEEcCCCcEEEEEc
Confidence            4579999999998 5554 2332       2567899998754  6678889999999999954

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.46  E-value=0.24  Score=46.95  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||..++..+..+..       |...|+++.+.  +++.++++|+.||.|++|..
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~--~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVG-------HDNWVRGVLFH--SGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEC--SSSSCEEEEETTTEEEEECC
T ss_pred             eCCCeEEEEECCCCceEEEEEC-------CCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEC
Confidence            3578999999999988877642       55678888763  46677899999999999954

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=91.46  E-value=0.19  Score=50.30  Aligned_cols=55  Identities=7%  Similarity=-0.098  Sum_probs=39.9

Q ss_pred             cccceEEEEecCCCcee-eeeCCCCCCCCCCCCcccceeccccCCC-ceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRL-ISWRPDRGSWARNSARCTALTLLNEHDD-SLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~-~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++... ..+.       .|...|+++.+...++. .++++|+.||.+++|..
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~-------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~  340 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQ-------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP  340 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEE-------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred             eCCCEEEEEECCCCCCceEEee-------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence            46899999999976432 2231       26678999964333443 78899999999999953

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.43  E-value=0.18  Score=47.24  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=40.1

Q ss_pred             cccceEEEEecCCCc-------eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS-------RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~-------~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||..++.       .+..+       ..|...|+++.+. ++...++++|+.||.|++|..
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITL-------EGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEE-------ECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEe-------cCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEEC
Confidence            458999999999873       33333       2366789999864 344468899999999999954

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=91.42  E-value=0.15  Score=48.06  Aligned_cols=60  Identities=8%  Similarity=-0.012  Sum_probs=43.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecc------ccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLL------NEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~i------ne~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+++|.|||..++.......-+.  ..-|...|.++.|-      +..|+.++++|+.|+.+|+|..
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~--~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGG--KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECT--TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eCCCcEEEEECCCCccceeeeecc--cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            358999999999885543211010  12378899999985      3457889999999999999953

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.40  E-value=0.22  Score=46.35  Aligned_cols=56  Identities=16%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..+....     +...++++.+ +++.+.++++|+.||.|++|..
T Consensus       201 ~~dg~v~~wd~~~~~~~~~~~~~~-----~~~~v~~v~~-sp~~~~~la~g~~d~~i~~wd~  256 (357)
T 4g56_B          201 GEDGRILLWDTRKPKPATRIDFCA-----SDTIPTSVTW-HPEKDDTFACGDETGNVSLVNI  256 (357)
T ss_dssp             ETTSCEEECCTTSSSCBCBCCCTT-----CCSCEEEEEE-CTTSTTEEEEEESSSCEEEEES
T ss_pred             ccCCceEEEECCCCceeeeeeecc-----ccccccchhh-hhcccceEEEeecccceeEEEC
Confidence            467999999999987776554332     4567888875 4455678889999999999954

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.39  E-value=0.35  Score=48.55  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+......-..|...|+++.+-  ++..++++|+.||.|++|..
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNV  268 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeC
Confidence            5689999999999988877643211111367789999874  46678899999999999953

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.35  E-value=0.2  Score=45.58  Aligned_cols=56  Identities=23%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++  .+..+.       .|...|+++.+....+..++++|+.||.|++|..-
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             ccCCEEEEEEcCCCceeEeeeec-------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            457999999999986  444442       25678999997654447788999999999999644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=91.28  E-value=0.24  Score=46.54  Aligned_cols=63  Identities=8%  Similarity=0.038  Sum_probs=42.8

Q ss_pred             CcccceEEEEecCCC-ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           2 TGLFLKEGIWDHITG-SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~-~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +|-+|+|.|||.+++ ..+..+.........|...|+++.+. ++...++++|+.||.|++|..-
T Consensus       194 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          194 SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             EECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETT
T ss_pred             EeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECc
Confidence            356899999999954 44433322222234567789999864 3334788999999999999543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=91.22  E-value=0.36  Score=44.25  Aligned_cols=54  Identities=7%  Similarity=0.071  Sum_probs=43.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||..+++.+..+..       |...|+++.+.  ++..++++|+.||.|++|..-
T Consensus       311 ~~~~~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          311 PYGSTIAVYTVYSGEQITMLKG-------HYKTVDCCVFQ--SNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EETTEEEEEETTTCCEEEEECC-------CSSCEEEEEEE--TTTTEEEEEETTSCEEEEEEC
T ss_pred             ecCCEEEEEECcCCcceeeecc-------CCCeEEEEEEc--CCCCEEEEECCCCeEEEEeCC
Confidence            3468999999999999888742       55689998865  456788999999999999543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=91.16  E-value=0.15  Score=48.23  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |-+++|.|||..++..+..+..       |...++++.| .+++..++++|+.||.|++|..-
T Consensus       163 s~D~tv~~Wd~~~~~~~~~~~~-------~~~~v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPILAGYP-------LSSPGISVQF-RPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEE-------CSSCEEEEEE-ETTEEEEEEEEETTSEEEEEETT
T ss_pred             ECCCeEEEEECCCCceeeeecC-------CCCCcEEEEE-CCCCCceEEecCCCCEEEEEECC
Confidence            5689999999988866654431       4567888886 44455688999999999999543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.11  E-value=0.32  Score=42.91  Aligned_cols=53  Identities=13%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..+..       |...|+++.+..  +.. +++|+.||.|++|..-
T Consensus       243 ~~dg~v~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~--~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          243 GEDRTVRIWSKENGSLKQVITL-------PAISIWSVDCMS--NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             ETTSEEEEECTTTCCEEEEEEC-------SSSCEEEEEECT--TSC-EEEEETTSCEEEEESC
T ss_pred             ecCCEEEEEECCCCceeEEEec-------cCceEEEEEEcc--CCC-EEEEeCCCcEEEEeCC
Confidence            5689999999999988877743       345788888643  223 5779999999999654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.07  E-value=0.33  Score=42.78  Aligned_cols=55  Identities=13%  Similarity=0.012  Sum_probs=43.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA   66 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~   66 (346)
                      +-+|+|.|||.+++.....+..       |...|+++.+..  +..++++|+.||.+++|+...
T Consensus        36 ~~dg~v~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           36 SRDGTVRLWSKDDQWLGTVVYT-------GQGFLNSVCYDS--EKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             ETTSEEEEEEESSSEEEEEEEE-------CSSCEEEEEEET--TTTEEEEEETTSCEEEEETTC
T ss_pred             EcCCcEEEEECCCCEEEEEeec-------CCccEEEEEECC--CCCEEEEecCCCeEEEEEeee
Confidence            4689999999998877766542       456799988753  667889999999999997664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=90.87  E-value=0.36  Score=44.43  Aligned_cols=62  Identities=18%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCC--C------------CCCCCCcccceeccccC--------CCceEEeeecCCceE
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRG--S------------WARNSARCTALTLLNEH--------DDSLLLTGYDDGSLS   60 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~--~------------w~~~~~~~t~l~~ine~--------~~~lll~g~~dG~vr   60 (346)
                      +.+|+|.|||..+++.+..+.....  .            ...|...|+++.+....        +..++++|+.||.|+
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            4589999999999998888862110  0            01126779999876432        226889999999999


Q ss_pred             EEeC
Q psy5736          61 VYRN   64 (346)
Q Consensus        61 i~r~   64 (346)
                      +|+.
T Consensus       390 iw~~  393 (397)
T 1sq9_A          390 WFRE  393 (397)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9953

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.82  E-value=0.4  Score=44.59  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=43.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++..+..+...      |...|+++.+. ++...++++|+.||.|++|..-
T Consensus       266 ~~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          266 HVSGVITVHNVFSKEQTIQLPSK------FTCSCNSLTVD-GNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCT------TSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred             cCCCeEEEEECCCCceeEEcccc------cCCCceeEEEe-CCCCCEEEEEeCCCeEEEEEcC
Confidence            45789999999999888777432      55689999863 3444488999999999999543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.78  E-value=0.35  Score=43.28  Aligned_cols=57  Identities=14%  Similarity=0.265  Sum_probs=39.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..|.....     ...+... .+...++.++++|+.||.|++|..-
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKN-----EKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCC-----SSSCCCE-EEECSSSCEEEECCTTSCEEEEETT
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCC-----ceEEEEE-EEEeCCCcEEEEECCCCEEEEEECC
Confidence            4689999999999988877753321     1112211 1234567788999999999999643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=90.68  E-value=0.43  Score=43.38  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.+||..+++....|.       .|...|+++.+.  ++..++++|+.||.|++|..-
T Consensus       173 ~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~s--p~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          173 GNDKMVKAWNLNQFQIEADFI-------GHNSNINTLTAS--PDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-------CCCSCEEEEEEC--TTSSEEEEEETTCEEEEEETT
T ss_pred             eCCCEEEEEECCcchhheeec-------CCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECC
Confidence            467999999999887776663       256789988863  467788999999999999654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.56  E-value=0.42  Score=42.75  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.....+.       .|...|+++.+..  +..++++|+.||.|++|..
T Consensus        42 ~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           42 SADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSS--DSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             eCCCeEEEEeCCCcccchhhc-------cCCCceEEEEEcC--CCCEEEEECCCCEEEEEEC
Confidence            468999999999887776663       2556799988643  5678899999999999954

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.52  E-value=0.35  Score=44.72  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+++.+..+..       |...|+++.+.. +...++++|+.||.|++|..-
T Consensus       282 ~~dg~v~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          282 GRDNTVLLWNPESAEQLSQFPA-------RGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             ESSSEEEEECSSSCCEEEEEEC-------SSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred             eCCCCEEEeeCCCCccceeecC-------CCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence            4579999999999988887752       456788888543 444788999999999999654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.46  E-value=0.28  Score=50.83  Aligned_cols=54  Identities=7%  Similarity=0.032  Sum_probs=42.2

Q ss_pred             cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      |-+|+|.|||.+++  ..+..+.       .|...|+++.+....+..++++|+.||.|++|.
T Consensus        28 ~~dg~I~vwd~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A           28 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ECCCcEEEEecCCCCCccceecc-------CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            46899999999844  4444442       266789999987766678889999999999994

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.43  E-value=0.38  Score=47.03  Aligned_cols=56  Identities=23%  Similarity=0.172  Sum_probs=44.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..+++.+..+.....   .|...|+++.+.   +..++++|+.||.+++|..
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQE---PVQGGIFALSWL---DSQKFATVGADATIRVWDV  281 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTB---CCCSCEEEEEES---SSSEEEEEETTSEEEEEET
T ss_pred             eCCCeEEEEECCCCCEeEEeccccc---ccCCceEEEEEc---CCCEEEEEcCCCcEEEEEC
Confidence            4579999999999998887732100   256789999987   7778899999999999954

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.41  E-value=0.37  Score=44.85  Aligned_cols=59  Identities=14%  Similarity=0.266  Sum_probs=41.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccc-------------------cCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLN-------------------EHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~in-------------------e~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||..+++.+..+.....    +...++++.+..                   .++..++++|+.||.|++|.
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTFNRKEN----PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECBTTB----TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             cCCCcEEEeECCCCceeEEeecCCC----CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence            4689999999999998888864332    233344433321                   14567889999999999996


Q ss_pred             CC
Q psy5736          64 NY   65 (346)
Q Consensus        64 ~~   65 (346)
                      .-
T Consensus       276 ~~  277 (420)
T 3vl1_A          276 VF  277 (420)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=90.32  E-value=0.34  Score=44.31  Aligned_cols=55  Identities=13%  Similarity=0.142  Sum_probs=40.7

Q ss_pred             cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++  +.+..+.       .|...|.++.+-...+..++++|+.||.|++|..
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLN-------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeeEEEEcc-------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            46899999998766  3444442       2567899988755444667889999999999954

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=89.83  E-value=0.38  Score=46.95  Aligned_cols=51  Identities=14%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.||| .+++.+..+.       .|...|++|.|-  ++..++++|+.||.|++|.
T Consensus        35 ~~d~~v~iWd-~~~~~~~~l~-------gh~~~V~~l~fs--pdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A           35 SDDKTVKLWN-RNGQLLQTLT-------GHSSSVWGVAFS--PDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             ETTSEEEEEC-TTSCEEEEEE-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred             eCCCEEEEEE-CCCCEEEEEe-------CCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEE
Confidence            4578999999 5677776663       266789999873  4678889999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=89.82  E-value=0.32  Score=45.00  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++........-     .|...|+++.+-  ++..++++|+.||.|++|..-
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s--~~~~~l~~~~~dg~v~vw~~~   97 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-----QVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTN   97 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-----CCSSCEEEEEEC--SSSSCEEEEESSSCEEEECCS
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-----ecCCceEEEEEC--CCCCeEEEEccCCeEEEeecc
Confidence            46889999999988633111111     256789999973  466788999999999999544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=89.70  E-value=0.41  Score=45.42  Aligned_cols=52  Identities=15%  Similarity=0.280  Sum_probs=40.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.++++.+..+.       .|...|+++.+    ++..+++|+.||.|++|..-
T Consensus       176 ~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~----~~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          176 STDRTLKVWNAETGECIHTLY-------GHTSTVRCMHL----HEKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEE----ETTEEEEEETTSEEEEEESS
T ss_pred             eCCCeEEEEECCcCcEEEEEC-------CCCCcEEEEEe----cCCEEEEEeCCCEEEEEECC
Confidence            457889999999888777664       25567888886    34567889999999999543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.69  E-value=0.52  Score=43.09  Aligned_cols=53  Identities=4%  Similarity=0.056  Sum_probs=40.3

Q ss_pred             cccceEEEEecCCCcee-eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRL-ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++..+ ..|..      .|...|++|.|-  ++..++++|+ |+.|++|..
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~l~fs--~~g~~l~s~~-~~~v~iwd~  242 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPV------DEEAKIKEVKFA--DNGYWMVVEC-DQTVVCFDL  242 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCC------CTTSCEEEEEEC--TTSSEEEEEE-SSBEEEEET
T ss_pred             cCCCEEEEEECCCCCCCccEEec------cCCCCEEEEEEe--CCCCEEEEEe-CCeEEEEEc
Confidence            57899999999999877 55643      166789999974  3566777777 559999954

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=89.67  E-value=0.49  Score=46.22  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=45.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccC--------CCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEH--------DDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~--------~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|.|.|||..+++.+..+..      .|...|+++.+....        +..++++|+.||.|++|..-
T Consensus       507 ~~dg~i~iw~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          507 DVMGKILLYDLQSREVKTSRWA------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             ETTSCEEEEETTTTEEEECCSC------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             CCCCeEEEeeCCCCcceeEeec------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence            4689999999999988876532      156789999876522        78899999999999999653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=89.26  E-value=0.51  Score=45.09  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             cccceEEEEecCCCceeeeeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWR   23 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~   23 (346)
                      +.+++|.|||..+|+.+..|.
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEc
Confidence            679999999999999888885

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=89.25  E-value=0.56  Score=43.44  Aligned_cols=54  Identities=11%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             cccceEEEEecCCCce----------------eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCc-eEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSR----------------LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGS-LSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~----------------~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~-vri~r~~   65 (346)
                      +.+|+|.|||..++..                +..+       ..|...|+++.+-  ++..++++|+.||. |++|..-
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~h~~~v~~~~~s--~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-------KAHTNPIKMVRLN--RKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEE-------CCCSSCEEEEEEC--TTSSEEEEEETTCSEEEEEETT
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEE-------EccCCceEEEEEC--CCCCEEEEEeCCCCEEEEEECC
Confidence            4678999999998752                2222       2367889999864  36788899999998 9999644

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=89.24  E-value=0.23  Score=48.05  Aligned_cols=57  Identities=14%  Similarity=0.037  Sum_probs=39.9

Q ss_pred             cccceEEEEecCCC--------ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITG--------SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~--------~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||..++        +.+..+..-    ..|+..|++|.+ ++.+..++++|+.||.|++|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~v~~-~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL----KDAGGMVIDMKW-NPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECC----CSGGGSEEEEEE-CSSCTTEEEEEETTSCEEEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeecc----CCCCCceEEEEE-CCCCCCEEEEEECCCeEEEEEc
Confidence            35899999998765        222222211    236778999986 4455778899999999999954

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.19  E-value=0.51  Score=51.10  Aligned_cols=55  Identities=25%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||+.+++.+..|.       .|...++++.+....+..++++|+.||.|++|..
T Consensus       676 ~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~  730 (1249)
T 3sfz_A          676 SADKKVKIWDSATGKLVHTYD-------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL  730 (1249)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEECCCCceEEEEc-------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence            467999999999998888774       2567899999887777888899999999999953

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=89.10  E-value=0.54  Score=42.61  Aligned_cols=54  Identities=9%  Similarity=0.051  Sum_probs=40.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||.+++.....+....     |...|+++.+.  ++..++++|+.||.+++|.
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d  124 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILR-----INRAARCVRWA--PNEKKFAVGSGSRVISICY  124 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCC-----CSSCEEEEEEC--TTSSEEEEEETTSSEEEEE
T ss_pred             cCCCeEEEEECCCCeeeeeEEeec-----CCCceeEEEEC--CCCCEEEEEeCCCEEEEEE
Confidence            457999999999886444443222     56789998865  3567889999999999984

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=89.10  E-value=0.64  Score=41.64  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=41.9

Q ss_pred             cccceEEEEecCCC------ceeeeeCCCCCC--CCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITG------SRLISWRPDRGS--WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~------~~~~~~~~~~~~--w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||+..+      ..+..|......  -..|...|+++.+..  +..++++|+.||.|++|..-
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETT
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCc
Confidence            45799999999887      666666543310  001234788887643  56678899999999999643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=89.08  E-value=0.47  Score=48.22  Aligned_cols=54  Identities=9%  Similarity=0.227  Sum_probs=43.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++..+..+.       .|...|+++.+.  ++...+++|+.||.|++|...
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFV-------GHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTT
T ss_pred             eCCCcEEEEECCCCcceeEEe-------CCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECC
Confidence            468999999999998877663       266789998864  456677999999999999643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.91  E-value=0.4  Score=43.12  Aligned_cols=55  Identities=13%  Similarity=0.050  Sum_probs=41.0

Q ss_pred             cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccC-CCceEEeeecCCceEEEeCC
Q psy5736           5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEH-DDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~-~~~lll~g~~dG~vri~r~~   65 (346)
                      +|+|.|||.+++........      .|...|+++.+.... +..++++|+.||.|++|..-
T Consensus        43 d~~v~iw~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREI------EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEE------EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             CcEEEEEeCCCCcccceeee------cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            79999999998865443321      155689999876542 36888999999999999543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=88.84  E-value=0.54  Score=44.02  Aligned_cols=52  Identities=17%  Similarity=0.126  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.++++.+..+.       .|...|+++.+    +..++++|+.||.|++|..-
T Consensus       153 ~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          153 LGNGLVDIYDVESQTKLRTMA-------GHQARVGCLSW----NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEE----ETTEEEEEETTSEEEEEETT
T ss_pred             CCCCeEEEEECcCCeEEEEec-------CCCCceEEEEE----CCCEEEEEcCCCCEEEEecc
Confidence            357999999999998888775       25678999987    34688999999999999654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=88.67  E-value=0.45  Score=43.78  Aligned_cols=58  Identities=9%  Similarity=-0.083  Sum_probs=41.5

Q ss_pred             cccceEEEEecCCCce-----eeeeCCCCCCCCCC--CCcccceecccc--CCCce-EEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSR-----LISWRPDRGSWARN--SARCTALTLLNE--HDDSL-LLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~-----~~~~~~~~~~w~~~--~~~~t~l~~ine--~~~~l-ll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++..     +..+....    .+  ...|+++.+...  ++... +++|+.||.|++|..
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLD----SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSC----TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCCCEEEEEccCCcccccccceeecccc----cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence            4689999999998876     65554321    12  467999998744  45666 899999999999954

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=88.59  E-value=0.63  Score=47.23  Aligned_cols=58  Identities=5%  Similarity=0.075  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..............    .|...|+++.+.......++++|+.||.|++|..
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGE----GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTT----SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             eCCCEEEEEECCCCcceeeccCCC----CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence            468999999987665444333222    3677799998765444678899999999999964

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=88.53  E-value=0.62  Score=42.20  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=42.0

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++.  .+..+.       .|...|+++.+..  +..++++|+.||.|++|..
T Consensus        27 ~~d~~v~i~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C           27 PNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEET--TTTEEEEEETTSCEEEEEE
T ss_pred             eCCCEEEEEeCCCCcEEeeeeec-------CCCCcccEEEEeC--CCCEEEEEcCCCeEEEEEC
Confidence            368999999999886  666664       2566899998754  6678899999999999954

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=88.48  E-value=0.63  Score=44.20  Aligned_cols=55  Identities=16%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             cccceEEEEecCC-CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHIT-GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~-~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..+ +..+..+.       .|...|+++.+. ++...++++|+.||.|++|..-
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~-------~h~~~v~~i~~s-p~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFE-------SHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEE-------CCSSCEEEEEEC-SSCTTEEEEEETTSCCEEEEGG
T ss_pred             eCCCeEEEEeCCCCCCCeEEee-------cCCCCEEEEEEC-CCCCCEEEEEeCCCcEEEEeCC
Confidence            5689999999987 44555553       255679999864 4566788999999999999654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=88.27  E-value=0.73  Score=40.87  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      -+|+|.|||.+++.....+..-.  ...|...++++.+..  +..++++|+.||.+++|..-
T Consensus        70 ~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           70 GKGCVKVWDISHPGNKSPVSQLD--CLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CBSEEEEEETTSTTCCSCSEEEE--CSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECC
T ss_pred             CCCeEEEEECCCCCceeeeeccc--ccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECC
Confidence            38999999998875333221100  012567899988754  56778889999999999543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=87.67  E-value=0.51  Score=44.88  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||..++............+..|...|+++.+. +.+..++++|+.||.|++|..-
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEe-CCCCCEEEEEeCCCeEEEEECC
Confidence            4589999999998533211100111122366789999864 3567788899999999999544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=87.51  E-value=0.88  Score=41.59  Aligned_cols=54  Identities=17%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|.|.|||..++..+..+..       |...|+++.+. ++...++++|+.||.|++|..
T Consensus       163 ~~~~~v~~~d~~~~~~~~~~~~-------~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~  216 (408)
T 4a11_B          163 TRGPKVQLCDLKSGSCSHILQG-------HRQEILAVSWS-PRYDYILATASADSRVKLWDV  216 (408)
T ss_dssp             ESSSSEEEEESSSSCCCEEECC-------CCSCEEEEEEC-SSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCeEEEEeCCCcceeeeecC-------CCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEEC
Confidence            4578999999999987776642       55679999864 344557889999999999954

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=87.19  E-value=0.93  Score=41.60  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             cccceEEEEec----CCCc------eeeeeCCCCCC---CCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDH----ITGS------RLISWRPDRGS---WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~----~~~~------~~~~~~~~~~~---w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||.    +++.      ....+...-..   -..|...|+++.+-.  +..++++|+.||.|++|.
T Consensus        65 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~~  136 (425)
T 1r5m_A           65 EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--DGNSIVTGVENGELRLWN  136 (425)
T ss_dssp             ETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred             cCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe
Confidence            45799999999    8887      44444332211   011456899998753  677889999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=86.85  E-value=1.1  Score=39.81  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||.++++.+..+..       |...++++.+..  +..++++|+.||.+++|..-
T Consensus       160 ~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQTLVRQFQG-------HTDGASCIDISN--DGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEECT--TSSEEEEEETTSEEEEEETT
T ss_pred             eCCCcEEEEeCCCCceeeeeec-------ccCceEEEEECC--CCCEEEEEecCCcEEEEECC
Confidence            3578999999999988877742       456788888643  56778899999999999543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.63  E-value=0.76  Score=42.03  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=37.7

Q ss_pred             cccceEEEEecCCCce---eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSR---LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~---~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.+++..   +..+..      .|...|+++.+..  +..++++|+.||.+++|...
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~------~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWWVSKHLKR------PLRSTILSLDWHP--NNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             ESSSCEEECCC-----CCCCEEECS------SCCSCEEEEEECT--TSSEEEEEESSSCEEEEEEC
T ss_pred             ecCCeEEEEEECCcccceeeeEeec------ccCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEE
Confidence            4578999999998864   334432      1567899998754  56788999999999999653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.56  E-value=0.39  Score=44.00  Aligned_cols=53  Identities=9%  Similarity=0.042  Sum_probs=34.2

Q ss_pred             cccceEEEEecCCCc---eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS---RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~---~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.+++.   ....+.       .|...|+++.+..  +..++++|+.||.|++|..
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLL-------RLNRAATFVRWSP--NEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECC-------CCSSCEEEEECCT--TSSCCEEEESSSCEEECCC
T ss_pred             eCCCeEEEEEcCCCCceeeeeEec-------ccCCceEEEEECC--CCCEEEEEecCCeEEEEEE
Confidence            457999999999887   222221       2567899998754  5667788999999999953

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.48  E-value=0.72  Score=47.12  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=42.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.|||++++..+..+..       |...|+++.+..  +..++++|+.||.|++|.
T Consensus        32 ~~~g~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A           32 LYSGRVEIWNYETQVEVRSIQV-------TETPVRAGKFIA--RKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEG--GGTEEEEEETTSEEEEEE
T ss_pred             eCCCEEEEEECCCCceEEEEec-------CCCcEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence            3578999999999988887752       456799988754  567788999999999994

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.19  E-value=1  Score=45.95  Aligned_cols=52  Identities=12%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.|||+.+++.+..+..       |...|+++.+.  ++...+++|+.||.|++|.
T Consensus        74 ~~dg~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           74 SDDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVH--PTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEEC--SSSSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEec-------CCCCEEEEEEe--CCCCEEEEEcCCCEEEEEE
Confidence            4579999999999988887742       55679998864  3556778999999999994

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=85.92  E-value=0.71  Score=41.32  Aligned_cols=52  Identities=13%  Similarity=-0.025  Sum_probs=39.5

Q ss_pred             cccceEEEEec-CCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDH-ITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~-~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||. +++.. ..+...     .|...|++|.+..   ..++++|+.||.|++|.
T Consensus        76 ~~dg~i~~wd~~~~~~~-~~~~~~-----~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd  128 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF-QALTNN-----EANLGICRICKYG---DDKLIAASWDGLIEVID  128 (342)
T ss_dssp             ETTSCEEEECSSSSSSE-EECBSC-----CCCSCEEEEEEET---TTEEEEEETTSEEEEEC
T ss_pred             cCCCeEEEEEeccCCce-Eecccc-----CCCCceEEEEeCC---CCEEEEEcCCCeEEEEc
Confidence            45799999999 87754 333221     1667899999765   67888999999999994

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.90  E-value=1  Score=48.69  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      |-+|+|.|||..++..+..+.       .|...|+++.+-  +++.++++|+.||.|++|..
T Consensus       634 ~~d~~i~vw~~~~~~~~~~~~-------~h~~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          634 GADKTLQVFKAETGEKLLDIK-------AHEDEVLCCAFS--SDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred             eCCCeEEEEECCCCCEEEEec-------cCCCCEEEEEEe--cCCCEEEEEeCCCeEEEEEC
Confidence            567999999999999888775       256789999874  45678899999999999954

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=85.86  E-value=1.2  Score=40.76  Aligned_cols=54  Identities=15%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|.|.|||..+++.+..+..       |...++++.+.  ++..++++|+.||.|++|..-
T Consensus       307 ~~d~~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~s--~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          307 SMDGSVRLWSLKQNTLLALSIV-------DGVPIFAGRIS--QDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-------TTCCEEEEEEC--TTSSEEEEEETTSCEEEEECH
T ss_pred             eCCCcEEEEECCCCcEeEeccc-------CCccEEEEEEc--CCCCEEEEEECCCeEEEEECC
Confidence            5689999999999988877652       44578888753  356788999999999999643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=85.63  E-value=1.1  Score=44.81  Aligned_cols=53  Identities=13%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+++|.|||..+++.+..+.       .|...|+++.|-  +++.++++|+.||.|++|..
T Consensus       167 s~D~~v~lwd~~~~~~~~~l~-------~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          167 SDDNTVAIFEGPPFKFKSTFG-------EHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             ETTSCEEEEETTTBEEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEECCCCeEeeeec-------cccCceEEEEEC--CCCCEEEEEECCCcEEEEEC
Confidence            457999999998887666653       266789999864  35778899999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=85.57  E-value=0.71  Score=47.77  Aligned_cols=55  Identities=24%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||..++.  .+..+.       .|...|+++.+....+..++++|+.||.|++|..
T Consensus        74 s~Dg~I~vwd~~~~~~~~~~~~~-------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A           74 SYDGKVLIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             eCCCeEEEEECCCCccccccccc-------CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            468999999999886  444432       2567899999765444778899999999999954

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=85.45  E-value=0.79  Score=44.21  Aligned_cols=52  Identities=10%  Similarity=0.036  Sum_probs=39.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||..++..+....       .|...++++.+-  .++.++++|+.||.|++|.
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~-------~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd  220 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATL-------PSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYL  220 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEE-------CGGGCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred             ECCCeEEEEEcCCCcceeecc-------CCCCceeEEEEc--CCCCEEEEEcCCCcEEEEc
Confidence            468999999999886554331       156689998863  3477788999999999994

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=85.15  E-value=1.1  Score=43.74  Aligned_cols=51  Identities=14%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.||| .+++.+..+.       .|...|++|.+-  ++..++++|+.||.|++|.
T Consensus       486 ~~d~~i~iw~-~~~~~~~~~~-------~h~~~v~~l~~s--~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          486 SDDKTVKLWN-RNGQLLQTLT-------GHSSSVRGVAFS--PDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             ETTSEEEEEE-TTSCEEEEEE-------CCSSCEEEEEEC--TTSSCEEEEETTSEEEEEC
T ss_pred             eCCCEEEEEc-CCCCEEEEEe-------CCCCCEEEEEEc--CCCCEEEEEECcCEEEEEe
Confidence            4578999999 4566666553       256789999874  4677889999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=84.79  E-value=1.1  Score=47.52  Aligned_cols=52  Identities=15%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+++|.|||.++++.+..+.        |...|+++.+-  ++..++++|+.||.|++|..
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~--------~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~  127 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVF--------VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDI  127 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEE--------CSSCEEEEECC--TTCSEEEEEETTSCEEEEET
T ss_pred             ECcCeEEEEECCCCcEEEEEc--------CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEEC
Confidence            458999999999998887773        23578888863  46677899999999999953

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=84.74  E-value=0.7  Score=46.06  Aligned_cols=53  Identities=15%  Similarity=0.082  Sum_probs=41.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+++|.|||..++..+..+.       .|...|+++.+ . ++..++++|+.||.|++|..
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~-------gH~~~V~sva~-S-p~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLV-------SRETTITAIGV-S-RLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEE-------ECSSCEEEEEC-C-SSCCBCEEEETTTEEECCBS
T ss_pred             CCCCcEEEEECcccccceeee-------cCCCceEEEEe-C-CCCCeEEEEECCCEEEEEec
Confidence            457899999999887655553       26678999987 3 46678899999999999954

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=84.46  E-value=1.6  Score=39.00  Aligned_cols=50  Identities=8%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             eEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           7 KEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         7 ~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      .|.+||..+++.+..+..       |...|+++.+..  +..++++|+.||.|++|..-
T Consensus       296 ~i~~~d~~~~~~~~~~~~-------~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          296 EARFYHKIFEEEIGRVQG-------HFGPLNTVAISP--QGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC-------CSSCEEEEEECT--TSSEEEEEETTSEEEEEEEC
T ss_pred             eeEEEecCCCcchhheec-------ccCcEEEEEECC--CCCEEEEEcCCCeEEEEECc
Confidence            799999999988887742       456799988643  66788999999999999543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=84.32  E-value=0.93  Score=48.20  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCC-CCCCcccceecc-----cc-CCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWA-RNSARCTALTLL-----NE-HDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~-~~~~~~t~l~~i-----ne-~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||.+++..+.....  ..|. .|...|++|.|-     .. .+...+++|+.||.|++|...
T Consensus       593 s~D~tv~lwd~~~~~~~~~~~~--~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          593 YAAGSLMLIDRRGPAIIYMENI--REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEG--GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             eCCCcEEEEECCCCeEEEEeeh--hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence            3579999999887765532111  1132 477889999986     32 235788999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=84.27  E-value=1.6  Score=40.56  Aligned_cols=49  Identities=8%  Similarity=-0.062  Sum_probs=35.5

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY   62 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~   62 (346)
                      .+++|.|||.++++.+..+.        |..+|++|.|-  ++..+++++++++.+.+|
T Consensus       155 ~d~~i~iwd~~~~~~~~~~~--------~~~~V~~v~fs--pdg~~l~s~s~~~~~~~~  203 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTEKFEIE--------TRGEVKDLHFS--TDGKVVAYITGSSLEVIS  203 (365)
T ss_dssp             SSCEEEEEETTTTEEEEEEE--------CSSCCCEEEEC--TTSSEEEEECSSCEEEEE
T ss_pred             CCCEEEEeECCCCcEEEEeC--------CCCceEEEEEc--cCCceEEeccceeEEEEE
Confidence            57899999999998887663        44579998863  466777777765544443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=84.19  E-value=2.1  Score=34.30  Aligned_cols=63  Identities=16%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC---CC-------cHhHHHHHHHHHHHHHHhCCc
Q psy5736         272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV---PP-------YKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~---p~-------h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      .+..+..+...|...+..|++++|+..|.+.++.+.....   |.       .+....+...++.||..+|+.
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~   79 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL   79 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            3445666777788889999999999999999988655432   22       556667888899999998874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=84.15  E-value=1.7  Score=39.87  Aligned_cols=55  Identities=13%  Similarity=0.066  Sum_probs=41.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++ ..+..+.....    +...++++.+.  ++..++++|+.||.|++|..
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~----~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDS----WDYWYCCVDVS--VSRQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCC----SSCCEEEEEEE--TTTTEEEEEETTSEEEEEET
T ss_pred             eCCCEEEEEECCC-CceEEEeccCC----CCCCeEEEEEC--CCCCEEEEECCCCCEEEEEC
Confidence            4679999999995 45555544432    45678888864  35668899999999999975

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=83.46  E-value=4.1  Score=34.64  Aligned_cols=53  Identities=11%  Similarity=0.049  Sum_probs=47.1

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      .+.-.+..|++++|+..+++.++.+.+...+.++....+...|+.+|...|+.
T Consensus       133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            34445678999999999999999999999999999999999999999999875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=82.94  E-value=3.1  Score=31.21  Aligned_cols=43  Identities=16%  Similarity=0.070  Sum_probs=30.5

Q ss_pred             hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      +..|++++|+..++++++..     |.++....+...++.+|..+|+.
T Consensus        50 ~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~   92 (129)
T 2xev_A           50 YATRNFQLAEAQFRDLVSRY-----PTHDKAAGGLLKLGLSQYGEGKN   92 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCH
T ss_pred             HHhccHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHcCCH
Confidence            45677777777777777653     66666667777788888877765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=82.21  E-value=1.9  Score=41.10  Aligned_cols=57  Identities=12%  Similarity=-0.059  Sum_probs=41.0

Q ss_pred             CcccceEEEEecCC-CceeeeeCCCCCCCCCCCCcccceeccc-cCCCceEEeeecCCceEEEeCC
Q psy5736           2 TGLFLKEGIWDHIT-GSRLISWRPDRGSWARNSARCTALTLLN-EHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         2 ~~~~~~~~~w~~~~-~~~~~~~~~~~~~w~~~~~~~t~l~~in-e~~~~lll~g~~dG~vri~r~~   65 (346)
                      +|-+++|.+|+... |+.+....       .|..+++.+.|-. +.+..++++|+.|+.||+|..-
T Consensus       153 ~g~d~~V~~~~~s~dG~~~~s~~-------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          153 TLSDQQVEVMTFAEDGGGKENQF-------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             SSTTCEEEEEEECTTSCEEEEEE-------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             cCCCCcEEEEEECCCCceeeeec-------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence            45688999999944 65554332       2556777777666 4667888999999999999654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=81.79  E-value=3.3  Score=35.31  Aligned_cols=40  Identities=8%  Similarity=-0.093  Sum_probs=18.5

Q ss_pred             ccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhC
Q psy5736         288 NTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG  332 (346)
Q Consensus       288 ~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G  332 (346)
                      ..|++++|+..+.++++.+     |.++....+...+..+|..+|
T Consensus        53 ~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           53 KNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALD   92 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhh
Confidence            3444444444444444432     444444444444555544443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=81.57  E-value=4.3  Score=34.45  Aligned_cols=53  Identities=8%  Similarity=-0.083  Sum_probs=47.1

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      -+.-.+..|++++|++.+.+.++.+.+...+.++....+...|+.+|...|+.
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  143 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA  143 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence            34455678999999999999999999999999999999999999999999875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=80.69  E-value=5.7  Score=29.70  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=33.2

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHH
Q psy5736         279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWS  329 (346)
Q Consensus       279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~  329 (346)
                      .+..|.-.+..|++++|+..++++++.+     |.++....++..|...-.
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence            3444555577788999999999888865     778877777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.37
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	99.09
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.91
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.67
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	98.54
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.05
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.99
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.82
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.99
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.53
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.06
d1tbga_	340	beta1-subunit of the signal-transducing G protein	93.12
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	92.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.4
d1tbga_	340	beta1-subunit of the signal-transducing G protein	92.35
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.1
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.05
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	91.58
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	91.55
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	91.1
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	90.81
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	90.71
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	89.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	89.41
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	89.34
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.13
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	87.01
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	86.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	86.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	84.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	82.53
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	82.35
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	82.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	80.35

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.37  E-value=1.2e-13  Score=124.43  Aligned_cols=65  Identities=22%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             eeeeeeccccccCCCCCCCCeEEEEe-----------CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCC
Q psy5736         136 YVGVGIYPTVSLFNHDCYPAVTRYFN-----------GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYW  204 (346)
Q Consensus       136 ~~g~glyp~~s~~NHSC~PN~~~~f~-----------g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~  204 (346)
                      ..|.++||.++++||||.||+...+.           ++.++|+|+|+|++|||||++||+.   .+..    .|...||
T Consensus       180 ~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~---~~n~----~ll~~yG  252 (261)
T d2h2ja2         180 NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN---KSNA----ELALDYG  252 (261)
T ss_dssp             --CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSS---CCHH----HHHHHSS
T ss_pred             cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCC---CCHH----HHHHhCC
Confidence            46789999999999999999988774           2579999999999999999999963   2332    3666899


Q ss_pred             Cce
Q psy5736         205 FEC  207 (346)
Q Consensus       205 F~C  207 (346)
                      |.+
T Consensus       253 Fv~  255 (261)
T d2h2ja2         253 FIE  255 (261)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            975

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=99.09  E-value=2.5e-11  Score=97.21  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             eccccccCCCCCCCCeEEEEe--CCEEEEEEeeccCCCCceeecccccc
Q psy5736         141 IYPTVSLFNHDCYPAVTRYFN--GKNIIVKALRPLKPKEVVAENYGLVF  187 (346)
Q Consensus       141 lyp~~s~~NHSC~PN~~~~f~--g~~~~v~a~r~I~~Geel~~~Y~~~~  187 (346)
                      ..+.++++||||.||+...+.  +..+.++|+|+|++||||+++|++.|
T Consensus        61 ~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~y  109 (119)
T d2g46a1          61 ALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY  109 (119)
T ss_dssp             CCSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSS
T ss_pred             ecCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhH
Confidence            346689999999999998876  46799999999999999999999854

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.91  E-value=2.6e-10  Score=104.71  Aligned_cols=65  Identities=14%  Similarity=0.275  Sum_probs=36.1

Q ss_pred             ccccCCCCCCCCeEEEEe--C------CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceec
Q psy5736         144 TVSLFNHDCYPAVTRYFN--G------KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKC  209 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f~--g------~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C  209 (346)
                      .+.++||||.||+.....  +      .++.++|+|+|++|||||++|+..+.. ...+.....+....|.|.|
T Consensus       212 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~-~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         212 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTG-LESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC------------------------
T ss_pred             hhheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCC-chhhcchhhcccCCceeeC
Confidence            367899999999987532  2      478999999999999999999984321 1223334444456788887

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.1e-09  Score=89.49  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             ccccCCCCCCCCeEEEE--e---CCEEEEEEeeccCCCCceeeccccc
Q psy5736         144 TVSLFNHDCYPAVTRYF--N---GKNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       144 ~~s~~NHSC~PN~~~~f--~---g~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      .+.++||||.||+....  .   +..+.++|+|+|++||||+++||..
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~  145 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD  145 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCC
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEeCCC
Confidence            46689999999998643  2   2578899999999999999999953

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=2.4e-08  Score=90.71  Aligned_cols=42  Identities=24%  Similarity=0.511  Sum_probs=35.1

Q ss_pred             cccCCCCCCCCeEEEE--eC------CEEEEEEeeccCCCCceeeccccc
Q psy5736         145 VSLFNHDCYPAVTRYF--NG------KNIIVKALRPLKPKEVVAENYGLV  186 (346)
Q Consensus       145 ~s~~NHSC~PN~~~~f--~g------~~~~v~a~r~I~~Geel~~~Y~~~  186 (346)
                      +.++||||.||+....  .+      ..+.++|+|+|++|||||++|++.
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~  262 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA  262 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTT
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCC
Confidence            4578999999998653  22      368999999999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0046  Score=51.51  Aligned_cols=52  Identities=19%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.|||.++++.+..|.       .|...|++|.+    ++.++++|+.||.+++|..-
T Consensus        32 s~Dg~i~vWd~~~~~~~~~l~-------~H~~~V~~v~~----~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          32 LRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY----DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             ESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC----CSSEEEEEETTSCEEEEESS
T ss_pred             eCCCeEEEEECCCCcEEEEEe-------cCCCCEeeeec----ccceeecccccccccccccc
Confidence            568999999999998887773       26778999986    46788999999999999543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0047  Score=54.71  Aligned_cols=54  Identities=15%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecccc----CCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNE----HDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine----~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.|||.++++.+..+..       |...|+++.+.+.    ++..++++|+.||.|++|+
T Consensus       327 ~~dg~i~vwd~~~~~~~~~l~~-------H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         327 SKDRGVLFWDKKSGNPLLMLQG-------HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             eCCCEEEEEECCCCcEEEEEeC-------CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence            3579999999999999887742       5678999988764    4678899999999999995

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.84  E-value=0.0071  Score=53.33  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||+.++.++..|......-.-|...|++|.+-  +++.++++|+.||.|++|..
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s--~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccC--CCCCEEEEEeCCCeEEEEEC
Confidence            4589999999999988887765544333467789999873  46678899999999999953

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0051  Score=52.78  Aligned_cols=53  Identities=17%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||.++++.+..|.       .|...|++|.+.+   +.++++|+.||.+++|...
T Consensus        30 s~Dg~i~vWd~~~~~~~~~l~-------~H~~~V~~l~~s~---~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2          30 ADDKMIRVYDSINKKFLLQLS-------GHDGGVWALKYAH---GGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             ETTTEEEEEETTTTEEEEEEE-------CCSSCEEEEEEET---TTEEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEE-------CCCCCEEEEEEcC---CCEEEEEeccccccccccc
Confidence            468999999999999888874       2667899999853   4578999999999999544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0063  Score=51.62  Aligned_cols=58  Identities=7%  Similarity=0.017  Sum_probs=42.0

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||++++.....+....    .|...|+++.|.. ++..++++|+.||.+++|..-
T Consensus        30 s~Dg~v~iwd~~~~~~~~~~~~~~----~h~~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          30 SWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSS
T ss_pred             ECCCeEEEEEccCCCcceEEEEec----CCCCCEEEEEEeC-CCCCEEEEcccccceeeeecc
Confidence            468999999998765433332111    2667899999754 556678999999999999543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.019  Score=50.32  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=40.8

Q ss_pred             CcccceEEEEecCCCceee---eeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           2 TGLFLKEGIWDHITGSRLI---SWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~---~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      ||-+|+|.|||++++....   .+...     .|...|++|.+.  +++.++++|+.||.|++|..
T Consensus        68 tg~dg~V~iWd~~~~~~~~~~~~~~~~-----~h~~~I~~v~~s--~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          68 TGGKGCVKVWDISHPGNKSPVSQLDCL-----NRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             EECBSEEEEEETTSTTCCSCSEEEECS-----CTTSBEEEEEEC--TTSSEEEEEESSSEEEEEEC
T ss_pred             EEECCEEEEEEccCCcccceeEEeeec-----CCCCcEEEEEEc--CCCCEEEEeecccccccccc
Confidence            4568999999998764332   22222     266789999974  45677899999999999953

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.027  Score=49.45  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             CcccceEEEEecCCCceeeeeCCCCCC-----------CCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           2 TGLFLKEGIWDHITGSRLISWRPDRGS-----------WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~-----------w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +|-+|+|.|||..+++.+..+......           ...|...|++|.+-  +++.++++|+.||.|++|...
T Consensus        79 sg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s--~~~~~l~s~~~dg~v~i~~~~  151 (388)
T d1erja_          79 TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIE  151 (388)
T ss_dssp             EECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred             EEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC--CCCCcceeccccccccccccc
Confidence            567999999999999888877543321           12345567888763  367788999999999999654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.032  Score=47.17  Aligned_cols=52  Identities=17%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |.+|+|.|||.++++.+..+.       .|...|+++.+-    ..++++|+.||.+++|..-
T Consensus        34 s~Dg~i~vWd~~~~~~~~~~~-------~h~~~V~~v~~~----~~~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          34 SDDNTLKVWSAVTGKCLRTLV-------GHTGGVWSSQMR----DNIIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEECC-------CCSSCEEEEEEE----TTEEEEEETTSCEEEEETT
T ss_pred             eCCCeEEEEECCCCCEEEEEe-------CCCCCEEEEEeC----CCccccceecccccccccc
Confidence            568999999999998887763       256789998863    2488999999999999543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.12  E-value=0.069  Score=45.24  Aligned_cols=54  Identities=19%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |.+|+|.|||..++..+..+.       .|...|+++.+.  ++..++++|+.|+.+++|...
T Consensus        74 s~Dg~v~iWd~~~~~~~~~~~-------~~~~~v~~v~~~--~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          74 SQDGKLIIWDSYTTNKVHAIP-------LRSSWVMTCAYA--PSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEEE-------CSCSCEEEEEEC--TTSSEEEEEETTCCEEEEESS
T ss_pred             ECCCceeeeecccceeEEEEe-------cccccEEeeEee--ccceeeeeecccceeeccccc
Confidence            468999999999998887774       256789999874  467788999999999998544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.95  E-value=0.075  Score=47.52  Aligned_cols=57  Identities=18%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             ceEEEEecCCCceeeeeCCCCCC------CCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           6 LKEGIWDHITGSRLISWRPDRGS------WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         6 ~~~~~w~~~~~~~~~~~~~~~~~------w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.|.|||.++++.+..+......      -..|...|++|.|-  ++..++++|+.||.|++|.-
T Consensus       256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs--pd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSSSEEEEEETTSEEEEEET
T ss_pred             ceeeecccccceeeeeeccccccccceeeeecccCceeeeccC--CCCCeeEEECCCCEEEEEEC
Confidence            46999999999888776533221      12367789999973  46788899999999999954

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.19  Score=36.03  Aligned_cols=59  Identities=10%  Similarity=-0.046  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736         276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~  335 (346)
                      +++.|+.+....+.|++.+|+.++++.++....... .++....+...|..+|..+|+.-
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-~~~~~~~~l~~Lg~~~~~~g~~~   63 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLD   63 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-cCccHHHHHHHHhhHHHhcCChH
Confidence            345667788889999999999999999998876433 34456788889999999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.92  E-value=0.063  Score=45.36  Aligned_cols=57  Identities=18%  Similarity=0.060  Sum_probs=42.9

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +-+|+|.+||..++..+.....-    ..|...|++|.+-  ++..++++|+.||.|++|..-
T Consensus       198 ~~d~~i~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s--~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         198 DQSRKVIPYSVANNFELAHTNSW----TFHTAKVACVSWS--PDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             ETTSCEEEEEGGGTTEESCCCCC----CCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccccccccccccc----ccccccccccccc--ccccceEEEcCCCEEEEEECC
Confidence            45789999999988766544332    2367789998853  466788999999999999643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.72  E-value=0.05  Score=48.31  Aligned_cols=53  Identities=11%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             cccceEEEEecCCCcee--eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRL--ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~--~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +-+|+|.|||.++++..  ..+.       .|...|++|.|-  ++..++++|+.||.+++|..
T Consensus        26 ~~~~~i~iw~~~~~~~~~~~~l~-------gH~~~V~~l~fs--p~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_          26 PNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWA--PDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEE--TTTTEEEEEETTSCEEEEEE
T ss_pred             eCCCEEEEEECCCCCEEEEEEec-------CCCCCEEEEEEC--CCCCEEEEEECCCeEEEEee
Confidence            34689999999877533  2332       267789999974  46678899999999999953

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.40  E-value=0.082  Score=44.59  Aligned_cols=54  Identities=19%  Similarity=0.071  Sum_probs=40.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      +.+|+|.|||+++++.+..+...      |...|+++.+..  ++. +++++.|+.+++|...
T Consensus        31 s~Dg~v~vWd~~~~~~~~~~~~~------h~~~v~~v~~~~--~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2          31 DAEGHINSWDISTGISNRVFPDV------HATMITGIKTTS--KGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             ETTSCEEEEETTTCCEEECSSCS------CSSCEEEEEECT--TSC-EEEEETTTEEEEECSS
T ss_pred             cCCCeEEEEECCCCcEEEEEcCC------CCCcEEEEEeec--cce-eecccceeeEEEeccC
Confidence            56899999999999877665432      567899998643  333 4667889999999543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.35  E-value=0.11  Score=43.87  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.+||......+..+....     +...|+++.+-  .+..++++|+.||.|++|..
T Consensus       245 s~d~~i~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~s--~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         245 SDDATCRLFDLRADQELMTYSHDN-----IICGITSVSFS--KSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTT-----CCSCEEEEEEC--SSSCEEEEEETTSCEEEEET
T ss_pred             eCCCeEEEEeeccccccccccccc-----ccCceEEEEEC--CCCCEEEEEECCCEEEEEEC
Confidence            457999999999998887775444     45678888754  35678899999999999954

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.10  E-value=0.087  Score=47.06  Aligned_cols=58  Identities=17%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +-+|+|.|||.++++.+..+..... ...|...|++|.|-  ++..++++|+.|+.+..++
T Consensus       202 s~Dg~i~iwd~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s--pdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         202 FNNGTVQISELSTLRPLYNFESQHS-MINNSNSIRSVKFS--PQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCC----CCCCCEEEEEEC--SSTTEEEEEEEETTEEEEE
T ss_pred             eCCCcEEEEeecccccccccccccc-cccccceEEEcccc--cccceeeeecCCCCcceee
Confidence            3579999999999998887765542 33467789999864  5778999999988644443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.05  E-value=0.043  Score=46.10  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      |-+|+|.|||.++++++..|...+      ...+.++.    .++.++++|++|+.+++|..+
T Consensus       270 ~~Dg~v~vWD~~~~~~l~~~~~~~------~~~~~~~s----~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         270 GSDGIISCWNLQTRKKIKNFAKFN------EDSVVKIA----CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCS------SSEEEEEE----ECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEEECCCCcEEEEecCCC------CCEEEEEE----eCCCEEEEEEcCCcEEEeeee
Confidence            568999999999999998875433      23455543    356677889999888887554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.13  Score=43.00  Aligned_cols=54  Identities=22%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||....+....+.....    |...+.++.+    +..++++|+.||.|++|..
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQF----NKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTS----CSSCEEEEEE----CSSEEEEEETTSEEEEEET
T ss_pred             cCCCEEEEEecccccccccccccce----eeeceeeccc----CCCeeEEEcCCCEEEEEEC
Confidence            4567888888887777666654432    4555555543    3467889999999999964

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.58  E-value=0.14  Score=42.75  Aligned_cols=55  Identities=22%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccc--------cCCCceEEeeecCCceEEEeC
Q psy5736           4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLN--------EHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~in--------e~~~~lll~g~~dG~vri~r~   64 (346)
                      -+|.|.|||..++......      |..|..+|+++.+-.        ..+..++++|+.||.|++|..
T Consensus       182 ~dg~i~i~d~~~~~~~~~~------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSR------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             TTSCEEEEETTTTEEEECC------SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             ccccccceeeccccccccc------ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            5789999999988665422      233667788887532        256778899999999999954

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.55  E-value=0.14  Score=44.53  Aligned_cols=55  Identities=18%  Similarity=0.093  Sum_probs=40.1

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecc-ccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLL-NEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~i-ne~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.|||.++++.+..+....       ..++.+.+- .-+++.++++|+.||.|++|..
T Consensus       225 ~~d~~i~iwd~~~~~~~~~l~~~~-------~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         225 GSDRKISCFDGKSGEFLKYIEDDQ-------EPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTT-------BCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ccccceeeeeeccccccccccccc-------cccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            568999999999999888875332       334433322 2256778899999999999954

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.10  E-value=0.13  Score=45.46  Aligned_cols=54  Identities=9%  Similarity=0.051  Sum_probs=40.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      |.+|+|.|||+.++.....+....     |...|+++.+.  +++..+++|+.||.+++|.
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~v~~i~~~--p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILR-----INRAARCVRWA--PNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCC-----CSSCEEEEEEC--TTSSEEEEEETTSSEEEEE
T ss_pred             ECCCeEEEEeeccccccccccccc-----ccccccccccc--cccccceeecccCcceeee
Confidence            468999999998876544443332     45679999863  3566778899999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.81  E-value=0.16  Score=41.81  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|+|.+||..+++.+..+..       |...|+++.+.  +++.++++|+.||.|++|..
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~-------~~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVG-------HDNWVRGVLFH--SGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEC--SSSSCEEEEETTTEEEEECC
T ss_pred             cCCCEEEEEECCCCcEEEEEeC-------CCCCEEEEEEC--CCCCEEEEEECCCeEEEEEC
Confidence            3578999999999988877753       45678887753  35678889999999999954

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.71  E-value=0.21  Score=43.29  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=44.6

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      |.+|.|.+||...++....+.....    |...|+++.+ +++...++++|+.||.|++|..
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~----~~~~v~~v~~-~pd~~~~l~s~~~d~~i~iwd~  235 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHK----QGSFVRDVEF-SPDSGEFVITVGSDRKISCFDG  235 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSC----TTCCEEEEEE-CSTTCCEEEEEETTCCEEEEET
T ss_pred             ecccccccccccccccceecccccC----CCCccEEeee-ccccceeccccccccceeeeee
Confidence            4589999999998877776655443    5677899885 5566788899999999999953

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.24  Score=41.53  Aligned_cols=50  Identities=24%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||.+++..+..+..       |...|+++.+    ++.++++|+.||.|++|.
T Consensus       220 ~~d~~i~i~d~~~~~~~~~~~~-------h~~~v~~~~~----~~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         220 SMDTTIRIWDLENGELMYTLQG-------HTALVGLLRL----SDKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC-------CSSCCCEEEE----CSSEEEEECTTSEEEEEE
T ss_pred             cccceEEeeecccccccccccc-------cccccccccc----ccceeeeeeccccccccc
Confidence            4678999999999988887742       4567888875    346789999999999994

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.41  E-value=0.29  Score=42.33  Aligned_cols=52  Identities=8%  Similarity=-0.059  Sum_probs=41.6

Q ss_pred             cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736           5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY   65 (346)
Q Consensus         5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~   65 (346)
                      .+.|.|||.++......|.       .|...|+++++  .+++.++++|+.||.|++|..-
T Consensus        37 ~~~v~i~~~~~~~~~~~~~-------~H~~~v~~~~~--sp~g~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          37 GTSVYTVPVGSLTDTEIYT-------EHSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             TTEEEEEETTCSSCCEEEC-------CCSSCEEEEEE--CTTSSEEEEEETTSEEEEEESS
T ss_pred             CCEEEEEECCCCceeEEEc-------CCCCCEEEEEE--eCCCCeEeccccCceEeeeeee
Confidence            3578999999887777763       26678999997  3468888999999999999543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.26  Score=42.53  Aligned_cols=52  Identities=8%  Similarity=-0.019  Sum_probs=40.4

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN   64 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~   64 (346)
                      +.+|.|.|||..++.....+        .|...|+++.+-  +++.++++|+.||.|++|..
T Consensus       243 ~~d~~i~i~d~~~~~~~~~~--------~~~~~i~~v~~s--~~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKYQLH--------LHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             ETTSCEEEEETTSSCEEEEC--------CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred             cccccccccccccccccccc--------ccccccceEEEC--CCCCEEEEEeCCCeEEEEEC
Confidence            45789999999988776542        256679998863  35668889999999999953

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.34  Score=39.32  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=33.8

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+|+|.|||..+...+..+...       ...++.+.    .+..++++|+.||.|++|.
T Consensus       195 ~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~----~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         195 SSDNTIRLWDIECGACLRVLEGH-------EELVRCIR----FDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC-------SSCEEEEE----CCSSEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEecccceeeeeeccc-------ceeeeecc----ccceEEEEEcCCCEEEEEE
Confidence            35688888888888777766432       23344322    4556778888999999884

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.52  E-value=0.62  Score=35.99  Aligned_cols=55  Identities=7%  Similarity=0.053  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      .+++++.+..+|...+..|++++|+..|.+.++..     |.+   ..+...|+.||..+|+.
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-----p~~---~~~~~~lg~~~~~~~~~   60 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PSN---AIYYGNRSLAYLRTECY   60 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc-----hhh---hhhhhhhHHHHHhcccc
Confidence            35667777778888888899999999998888753     333   34556677777777764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.01  E-value=1.4  Score=33.79  Aligned_cols=63  Identities=10%  Similarity=0.029  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCC----CcHhHHHHHHHHHHHHHHhCCcc
Q psy5736         273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVP----PYKLASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       273 l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p----~h~~~~~~~~~L~~~y~~~G~~~  335 (346)
                      +.++...+.++...+..|++++|++.|.+.|+......-.    ++.....+...+..+|..+|+..
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~   72 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD   72 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccc
Confidence            3345555666777888999999999999999988775211    23345667888999999999864

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=0.55  Score=34.60  Aligned_cols=51  Identities=12%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      +.++..+|-..+..|++++|+..|.++|+.-     |.++   .+...++.+|..+|+.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~-----p~~~---~~~~~~a~~~~~~~~~   53 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNH---VLYSNRSAAYAKKGDY   53 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----Ccch---hhhhcccccccccccc
Confidence            3445556777777788888888888887653     3333   3556666677766664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=1.6  Score=34.10  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-------hHHHHHHHHHHHHHHhCCc
Q psy5736         271 TKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-------LASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       271 ~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-------~~~~~~~~L~~~y~~~G~~  334 (346)
                      +.+..+..+.++|...+..+++++|+..|.+.|+.+.......+.       ....+...++.||..+|+.
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            345566666677888899999999999999999987765444333       2334444578888888764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.26  E-value=2.4  Score=32.44  Aligned_cols=65  Identities=12%  Similarity=0.054  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh--------HHHHHHHHHHHHHHhCCcc
Q psy5736         271 TKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL--------ASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       271 ~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~--------~~~~~~~L~~~y~~~G~~~  335 (346)
                      +.++++..+..+|...+..|++.+|+..|.+.++.+...-......        ...+..-++.||..+|+.-
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   84 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP   84 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccc
Confidence            4566777787889999999999999999999998776544333322        2234445788888887653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=82.53  E-value=2.5  Score=32.74  Aligned_cols=63  Identities=16%  Similarity=0.035  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh-------HHHHHHHHHHHHHHhCCc
Q psy5736         272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL-------ASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~-------~~~~~~~L~~~y~~~G~~  334 (346)
                      .+..+..+.++|..++..|++.+|+..|.+.|..+..........       ...+..-++.||..+|+.
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            456677777788999999999999999999998886655443322       333344577788887764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.35  E-value=1  Score=37.40  Aligned_cols=55  Identities=9%  Similarity=-0.219  Sum_probs=38.2

Q ss_pred             cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736           3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR   63 (346)
Q Consensus         3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r   63 (346)
                      +.+++|.|||.++++.+..+.-..     ++....++. +.++..-+.++++.+|.|.+|.
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i~~~~-----~~~~~~~i~-~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVITIAD-----AGPTPMVPM-VAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTT-----CTTCCCCEE-ECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEECCCCeEEEEEECCC-----CCCCccEEE-ECCCCCEEEEEECCCCeEEEEE
Confidence            457999999999998887775443     234556665 3433344446677899999994

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.01  E-value=1.1  Score=34.94  Aligned_cols=48  Identities=10%  Similarity=0.055  Sum_probs=27.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736         279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK  334 (346)
Q Consensus       279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~  334 (346)
                      +.+.+...+..|++++|+..|.+.|+.-     |.++   .+...++.||..+|+.
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-----p~~~---~~~~~lg~~y~~~~~~   54 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA---VYYTNRALCYLKMQQP   54 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH---HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHhHHHHHhhhhhh
Confidence            3344555666677777777777766652     3332   3444555666666553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=2  Score=31.80  Aligned_cols=47  Identities=13%  Similarity=0.056  Sum_probs=34.7

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736         281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW  335 (346)
Q Consensus       281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~  335 (346)
                      +.+...+..+++++|++.|.+.|+.     .|.+.   .+...++.+|..+|+.-
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~   55 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM---TYITNQAAVYFEKGDYN   55 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH---HHHHhHHHHHHHcCchH
Confidence            4566677888899999999998876     35444   36777788888887653