Psyllid ID: psy573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MKKKKTKKEKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHLLT
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEEEEEEEcccEEEcccEEEEEccccEEEEEEccccccccEEEEEEccEEEcccccccEEEccccEEEEccccccccEEEEEEEEccccEEEEEEEEEEEccccEEEEccccEEEEccccEEEEEEEccccccEEEEEEccEEcccccEEEEccccEEEccccccccEEEEEEEEccccEEEEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccEEEEEEEccccEEEccccEEEEcccEEEEEEcccccccccEEEEEEcccEcccccccEEEEEcccEEEEEEEEcccccEEEEEEEEcccEEEEccEEEEEccccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEcccEcccccEEEEcccEEEEEEcEcccccEEEEEEEccccEEEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MKKKKTKKEKEEEEKKKLKIEMLREEFrvqpksqrvaagdtallecgpprghpeptlvwkknghpidfenskrlrlvdgtnlaiqdsrktddgryQCVVKnvagtresTDAVLRVLVkpyiirgpkdttvsaGSIIVFECSVGGDAVLTVHWKRlgsampedrmsvlpsrslqlsdvrledggeyvcEAENAVGKISASATLTVQSKYLKVIHLLT
Flexible Loop (DISEMBL)
mkkkktkkekeeeekkklkiemlreefrvqpksqrvaAGDTALLECGPPRGHPEPTLVWKKNGHPIDfenskrlrlvdgtnlaiqdsrktddgryqCVVKnvagtrestdavLRVLVKpyiirgpkdttvsAGSIIVFECSVGGDAVLTVHWKRLGSampedrmsvlpsrslQLSDVRLEDGGEYVCEAENAvgkisasatltvqskylkvihllt
Low Complexity Region (SEG)
MkkkktkkekeeeekkklkiemlreeFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHLLT
Disordered region (IsUnstruct)
********************************************************LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS*******************VRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHL**
Disordered Region (DISOPRED)
*KKKK******EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS**LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHLL*
Disordered Region (DISEMBL)
****************KLKIEMLREEFR********AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHLLT
Disordered Region (DISPRO)
*****TKKEKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHLLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9Y6N7	1651	Roundabout homolog 1 OS=H	yes	N/A	0.861	0.112	0.425	3e-37
O89026	1612	Roundabout homolog 1 OS=M	yes	N/A	0.861	0.115	0.425	3e-37
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.875	0.148	0.415	6e-37
O55005	1651	Roundabout homolog 1 OS=R	yes	N/A	0.861	0.112	0.414	4e-36
Q7TPD3	1470	Roundabout homolog 2 OS=M	no	N/A	0.861	0.126	0.425	5e-35
Q9HCK4	1378	Roundabout homolog 2 OS=H	no	N/A	0.865	0.135	0.417	1e-34
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.865	0.134	0.380	1e-31
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.861	0.136	0.382	1e-31
Q3UQ28	1475	Peroxidasin homolog OS=Mu	no	N/A	0.837	0.122	0.328	6e-26
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.842	0.123	0.319	2e-24

>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  +
Sbjct: 163 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TI 220

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L I  +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      
Sbjct: 221 RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAE 280

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F+C   GD V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  
Sbjct: 281 FKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAE 340

Query: 198 ASATLTVQ 205
           ASATLTVQ
Sbjct: 341 ASATLTVQ 348

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.
Homo sapiens (taxid: 9606)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  +
Sbjct: 124 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TI 181

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L I  +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      
Sbjct: 182 RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAE 241

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F+C   GD V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  
Sbjct: 242 FKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAE 301

Query: 198 ASATLTVQ 205
           ASATLTVQ
Sbjct: 302 ASATLTVQ 309

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 1/190 (0%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           LK+ MLRE+FRV+P++ +   G+ A+LEC PPRG PEP + W+K+   +  ++  R  L 
Sbjct: 126 LKLAMLREDFRVRPRTVQALGGEMAVLECSPPRGFPEPVVSWRKDDKELRIQDMPRYTLH 185

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
              NL I    ++D G YQCV  N+ G R S  A L V  KP   + PKD TV  G+ ++
Sbjct: 186 SDGNLIIDPVDRSDSGTYQCVANNMVGERVSNPARLSVFEKPKFEQEPKDMTVDVGAAVL 245

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
           F+C V GD    + WKR    MP  R  +   +R L++  V+  D GEYVC A N  G +
Sbjct: 246 FDCRVTGDPQPQITWKRKNEPMPVTRAYIAKDNRGLRIERVQPSDEGEYVCYARNPAGTL 305

Query: 197 SASATLTVQS 206
            ASA L VQ+
Sbjct: 306 EASAHLRVQA 315

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 2/188 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  +
Sbjct: 163 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TI 220

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L I  +RK+D G+Y CV  N+ G RES  A + VL +P  ++ P +  V+      
Sbjct: 221 RGGKLMITYTRKSDAGKYVCVGTNMVGERESKVADVTVLERPSFVKRPSNLAVTVDDSAE 280

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F+C   GD V T  W++    +P+ R  +    +L++  V   D G Y C AEN VGK  
Sbjct: 281 FKCEARGDPVPTFGWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAE 340

Query: 198 ASATLTVQ 205
           ASATLTVQ
Sbjct: 341 ASATLTVQ 348

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Rattus norvegicus (taxid: 10116)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 2/188 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P    VAAG+ A+LEC PPRGHPEPT+ WKK+   ID +  +R+  +
Sbjct: 126 LEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-I 183

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L I ++RK+D G Y CV  N+ G R+S  A L V  +P  +R P +  V     + 
Sbjct: 184 RGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVE 243

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F C V GD   TV WK+  + +P  R  +    +L++      D G YVC AEN VGK+ 
Sbjct: 244 FRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYVCIAENRVGKVE 303

Query: 198 ASATLTVQ 205
           ASATLTV+
Sbjct: 304 ASATLTVR 311

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 112/189 (59%), Gaps = 2/189 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P    VAAG+ A+LEC PPRGHPEPT+ WKK+   ID +  +R+  +
Sbjct: 126 LEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-I 183

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L I ++RK+D G Y CV  N+ G R+S  A L V  +P  +R P +  V     + 
Sbjct: 184 RGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVE 243

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F C V GD   TV WK+  + +P  R  +    +L++      D G Y+C AEN VGK+ 
Sbjct: 244 FRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKME 303

Query: 198 ASATLTVQS 206
           ASATLTV++
Sbjct: 304 ASATLTVRA 312

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Homo sapiens (taxid: 9606)

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 17  KLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL 76
            L++ +LR++FR  P +  VA G+ A+LEC PPRGHPEP++ W+K+G  +  E  +    
Sbjct: 158 SLEVAVLRDDFRQSPGNVVVAVGEPAVLECVPPRGHPEPSVSWRKDGARLKEEEGRIT-- 215

Query: 77  VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSII 136
           + G  L +  + K+D G Y CV  N+AG RES  A + VL +P  +R P +  V A + +
Sbjct: 216 IRGGKLMMSHTLKSDAGMYVCVASNMAGERESAAAEVMVLERPSFLRRPVNQVVLADAPV 275

Query: 137 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
            F C V GD    + W++    +P  R  +    SL +  V  ED G Y C AEN+VG+ 
Sbjct: 276 TFLCEVKGDPPPRLRWRKEDGELPTGRYEIRSDHSLWIGHVSAEDEGTYTCVAENSVGRA 335

Query: 197 SASATLTVQ 205
            AS +L+V 
Sbjct: 336 EASGSLSVH 344

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 105/188 (55%), Gaps = 2/188 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR++FR  P +  VA G+ A++EC PP+GHPEP + WKK    I  +  +    +
Sbjct: 159 LEVAVLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKG--KIKLKEEEGRITI 216

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
            G  L +  + K+D G Y CV  N+AG RES  A L VL +P  +R P +  V A + + 
Sbjct: 217 RGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPVN 276

Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           F C V GD    +HW++    +P  R  +    SL +  V  ED G Y C AEN+VG+  
Sbjct: 277 FLCEVQGDPQPNLHWRKDDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAE 336

Query: 198 ASATLTVQ 205
           AS +L+V 
Sbjct: 337 ASGSLSVH 344

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 24  REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 83
           R     +P+   V +G+T    C    G+P+P ++W +N + +  +   RL L+D   L 
Sbjct: 242 RPRITSEPQDADVTSGNTVYFTCRA-EGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLM 300

Query: 84  IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFEC 140
           IQ++++ D+G YQC+ KNVAG  ++ +  LR L    +P  +  P++T V  G  +  EC
Sbjct: 301 IQNTQEADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVGESVTLEC 360

Query: 141 SVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           S  G  +  + W R G   P   + R+++ PS  L + +V   D GEY C A N+V  I 
Sbjct: 361 SATGHPLPQITWTR-GDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFASNSVDSIH 419

Query: 198 ASATLTVQS 206
           A+A + VQ+
Sbjct: 420 ATAFIIVQA 428

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 6/188 (3%)

Query: 24  REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 83
           R     +P+   V +G+T    C    G+P+P ++W +N + +  +   RL L+D   L 
Sbjct: 245 RPRITSEPQDADVTSGNTVYFTCRA-EGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLM 303

Query: 84  IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFEC 140
           IQ++++TD G YQC+ KNVAG  ++ +  LR      +P  +  P++T V  G  +  EC
Sbjct: 304 IQNTQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTLEC 363

Query: 141 SVGGDAVLTVHWKRLG-SAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA 198
           S  G     + W R   + +P D R+++ PS  L + +V   D GEY C A N +  + A
Sbjct: 364 SATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHA 423

Query: 199 SATLTVQS 206
           +A + VQ+
Sbjct: 424 TAFIIVQA 431

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
157127854	1285	roundabout [Aedes aegypti] gi|108872774|	0.875	0.147	0.596	3e-64
170053065	1253	roundabout [Culex quinquefasciatus] gi|1	0.865	0.149	0.587	9e-63
157114558	1345	roundabout [Aedes aegypti] gi|108877237|	0.875	0.140	0.570	4e-61
158299323	919	AGAP010242-PA [Anopheles gambiae str. PE	0.875	0.205	0.581	4e-60
194759230	1335	GF15179 [Drosophila ananassae] gi|190615	0.865	0.140	0.587	2e-59
242008680	822	roundabout 1, 2, 3, putative [Pediculus	0.907	0.238	0.557	2e-59
194759252	1485	GF14722 [Drosophila ananassae] gi|190615	0.875	0.127	0.560	2e-59
157109915	791	roundabout [Aedes aegypti] gi|108868400|	0.856	0.233	0.577	5e-59
24580861	1463	leak, isoform A [Drosophila melanogaster	0.902	0.133	0.548	1e-58
194854102	1463	GG24592 [Drosophila erecta] gi|190660155	0.875	0.129	0.554	1e-58

>gi|157127854|ref|XP_001661212.1| roundabout [Aedes aegypti] gi|108872774|gb|EAT36999.1| AAEL010961-PA [Aedes aegypti]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 149/191 (78%), Gaps = 2/191 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LRE+FR++P++ RVA G+TALLECGPPRG+PEP + W+KNG  +D  NSKR+R+V
Sbjct: 118 LQVSVLREDFRLEPQNTRVAQGETALLECGPPRGYPEPVVFWRKNGQTLDLNNSKRIRIV 177

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQ++R++DDGRYQCV KNV G REST A LRV VKP+++RGP++ T   GS +V
Sbjct: 178 DGGNLAIQEARQSDDGRYQCVAKNVVGVRESTVAFLRVHVKPFLMRGPQNQTAVVGSSVV 237

Query: 138 FECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C VGGD V  V W+R  S+  MP DR+ VL  RSLQ+  + +ED GEY CEA+NAVG 
Sbjct: 238 FQCRVGGDPVPDVLWRRSASSGNMPLDRVHVLEDRSLQIDGITIEDMGEYSCEADNAVGS 297

Query: 196 ISASATLTVQS 206
           I+AS +LTV S
Sbjct: 298 ITASGSLTVHS 308

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170053065|ref|XP_001862505.1| roundabout [Culex quinquefasciatus] gi|167873760|gb|EDS37143.1| roundabout [Culex quinquefasciatus]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 145/189 (76%), Gaps = 2/189 (1%)

Query: 20  IEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 79
            EMLRE+FR++P++ RVA G+TALLECGPP+G+PEP + W+KNG  +D  NSKR+R+VDG
Sbjct: 116 FEMLREDFRLEPQNTRVAQGETALLECGPPKGYPEPVVTWRKNGQTMDMSNSKRIRIVDG 175

Query: 80  TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFE 139
            NLAIQD+R++DDGRYQCV KNV G REST A LRV VKP++IRGP++ TV AG  +VF+
Sbjct: 176 GNLAIQDARQSDDGRYQCVAKNVVGIRESTVAFLRVHVKPFLIRGPQNQTVVAGRSVVFQ 235

Query: 140 CSVGGDAVLTVHWKR--LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
           C VGG+ +  V W+R   G  MP  R+ +L  RSL++ D+ ++D GEY CEA+NAVG I+
Sbjct: 236 CRVGGEPIPDVLWRRSASGGNMPLGRVHILEDRSLKIDDITVDDMGEYSCEADNAVGSIT 295

Query: 198 ASATLTVQS 206
           AS  L V S
Sbjct: 296 ASGNLVVHS 304

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114558|ref|XP_001658079.1| roundabout [Aedes aegypti] gi|108877237|gb|EAT41462.1| AAEL006901-PA [Aedes aegypti]

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 109/191 (57%), Positives = 145/191 (75%), Gaps = 2/191 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LRE+FR++P+S RVA G+T LLECGPP+G PEPT+ W+KNG  +D E+SKR+R+V
Sbjct: 174 LQVAVLREDFRLEPQSTRVAQGETVLLECGPPKGIPEPTVAWRKNGQKLDVESSKRIRVV 233

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQD R+TD+G+YQC+ +N  G RES  A L+V VKP++IRGP D+T+  GS + 
Sbjct: 234 DGGNLAIQDVRQTDEGQYQCIARNQVGVRESAVAFLKVHVKPFLIRGPHDSTIVEGSSVT 293

Query: 138 FECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C VGGD +  V W+R  S   MP DR+ +L  RSL+L +V L+D GEY CEA+NAVG 
Sbjct: 294 FQCRVGGDPMPDVLWRRSASGGNMPLDRVHILEDRSLRLENVVLDDEGEYSCEADNAVGT 353

Query: 196 ISASATLTVQS 206
           ISA+ TL V S
Sbjct: 354 ISATGTLNVHS 364

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299323|ref|XP_554155.3| AGAP010242-PA [Anopheles gambiae str. PEST] gi|157014309|gb|EAL39306.3| AGAP010242-PA [Anopheles gambiae str. PEST]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 144/191 (75%), Gaps = 2/191 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LREEFR++P+  RVA G+T LLECGPP+G PEPTL W+KNG  ++ E SKR+R+V
Sbjct: 110 LQVAVLREEFRLEPQHTRVAQGETVLLECGPPKGIPEPTLWWRKNGQKLEVEASKRIRIV 169

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQD R+TD+G+YQC+ KN+ G RES  A L+V VKP++IRGP D TV  G+ + 
Sbjct: 170 DGGNLAIQDVRQTDEGQYQCIAKNLVGVRESATAFLKVHVKPFLIRGPHDQTVVEGTSVT 229

Query: 138 FECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C VGGD +  V W+R  S   MP +R+ +L  RSL+L DV L+D GEY CEA+NAVG 
Sbjct: 230 FQCRVGGDPMPDVLWRRSASGGNMPLNRVHILEDRSLRLEDVVLDDEGEYSCEADNAVGA 289

Query: 196 ISASATLTVQS 206
           ISA+ TLTV S
Sbjct: 290 ISATGTLTVHS 300

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759230|ref|XP_001961852.1| GF15179 [Drosophila ananassae] gi|190615549|gb|EDV31073.1| GF15179 [Drosophila ananassae]

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 111/189 (58%), Positives = 139/189 (73%), Gaps = 2/189 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++ +LR+EFR++P++ R+A GDTALLEC PPRG PEPT+ WKK G  +D E SKR+R+V
Sbjct: 114 LQVAVLRDEFRLEPQNTRIAQGDTALLECAPPRGIPEPTVTWKKGGQKLDLEGSKRIRIV 173

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQD+R+TD+G+YQC+ KN  G RES+ A L+V VKPYIIRGP D TV  G+ + 
Sbjct: 174 DGGNLAIQDARQTDEGQYQCIAKNPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVT 233

Query: 138 FECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F C VGGD +  V W R  S   MP DR+SVL  RSL+L  V + D GEY CEA+N VG 
Sbjct: 234 FPCRVGGDPMPDVLWLRTASGGNMPLDRVSVLEDRSLRLERVTIADEGEYSCEADNVVGA 293

Query: 196 ISASATLTV 204
           I+A  TLTV
Sbjct: 294 ITAMGTLTV 302

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008680|ref|XP_002425130.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis] gi|212508804|gb|EEB12392.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 145/201 (72%), Gaps = 5/201 (2%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L + +LRE+FR  P + RVA G+TALLECGPP+GHPEP + WKKNGH ID + +KR R+V
Sbjct: 74  LHLAVLREDFRAFPHNTRVALGETALLECGPPKGHPEPVVFWKKNGHVIDLDKNKRFRIV 133

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQD R++DDG+YQC+ KNV GTRES  A+L++ VKP+II+GP D  V AG+ + 
Sbjct: 134 DGGNLAIQDVRQSDDGKYQCLAKNVVGTRESATALLKIHVKPFIIKGPVDAVVLAGNSVD 193

Query: 138 FECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C VGGD +  V W+R   A  MP  ++ +   RSL+L +V  ED GEY CEA+N VG 
Sbjct: 194 FQCKVGGDPLPDVLWRRTAGAGNMPLGKVHITDDRSLRLDNVTPEDEGEYTCEADNDVGM 253

Query: 196 ISASATLTVQSKYLKVIHLLT 216
           ISASATL V   Y +++ L T
Sbjct: 254 ISASATLVV---YYQIVDLET 271

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759252|ref|XP_001961863.1| GF14722 [Drosophila ananassae] gi|190615560|gb|EDV31084.1| GF14722 [Drosophila ananassae]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 143/191 (74%), Gaps = 2/191 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++  LR+EFR++P + RVA G+ AL+ECG PRG PEP + W+KNG  ++   +KR+R+V
Sbjct: 177 LQVAFLRDEFRLEPVNTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLAGNKRIRIV 236

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQD+R++DDGRYQCVVKNV GTREST A L+V ++P++IRGP++ T   GS +V
Sbjct: 237 DGGNLAIQDARQSDDGRYQCVVKNVVGTRESTTAFLKVHIRPFLIRGPQNQTAVVGSSVV 296

Query: 138 FECSVGGDAVLTVHWKRL--GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C +GGD +  V W+R   G  MP  R+ VL  RSL+L DV LED GEY CEA+NAVG 
Sbjct: 297 FQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYSCEADNAVGG 356

Query: 196 ISASATLTVQS 206
           I+A+  LTV +
Sbjct: 357 ITATGILTVHA 367

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109915|ref|XP_001650879.1| roundabout [Aedes aegypti] gi|108868400|gb|EAT32625.1| AAEL015183-PA, partial [Aedes aegypti]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 22  MLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN 81
           +LRE+FR++P+S RVA G+T LLECGPP+G PEPT+ W+KNG  +D E+SKR+R+VDG N
Sbjct: 13  VLREDFRLEPQSTRVAQGETVLLECGPPKGIPEPTVAWRKNGQKLDVESSKRIRVVDGGN 72

Query: 82  LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECS 141
           LAIQD R+TD+G+YQC+ +N  G RES  A L+V VKP++IRGP D+T+  GS + F+C 
Sbjct: 73  LAIQDVRQTDEGQYQCIARNQVGVRESAVAFLKVHVKPFLIRGPHDSTIVEGSSVTFQCR 132

Query: 142 VGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
           VGGD +  V W+R  S   MP DR+ +L  RSL+L +V L+D GEY CEA+NAVG ISA+
Sbjct: 133 VGGDPMPDVLWRRSASGGNMPLDRVHILEDRSLRLENVVLDDEGEYSCEADNAVGTISAT 192

Query: 200 ATLTVQS 206
            TL V S
Sbjct: 193 GTLNVHS 199

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580861|ref|NP_536792.2| leak, isoform A [Drosophila melanogaster] gi|22945495|gb|AAF51375.2| leak, isoform A [Drosophila melanogaster]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 144/197 (73%), Gaps = 2/197 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++  LR+EFR++P + RVA G+ AL+ECG PRG PEP + W+KNG  ++   +KR+R+V
Sbjct: 182 LQVAFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIV 241

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQ++R++DDGRYQCVVKNV GTRES  A L+V V+P++IRGP++ T   GS +V
Sbjct: 242 DGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVV 301

Query: 138 FECSVGGDAVLTVHWKRL--GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C +GGD +  V W+R   G  MP  R+ VL  RSL+L DV LED GEY CEA+NAVG 
Sbjct: 302 FQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGG 361

Query: 196 ISASATLTVQSKYLKVI 212
           I+A+  LTV +    VI
Sbjct: 362 ITATGILTVHAPPKFVI 378

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194854102|ref|XP_001968288.1| GG24592 [Drosophila erecta] gi|190660155|gb|EDV57347.1| GG24592 [Drosophila erecta]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 142/191 (74%), Gaps = 2/191 (1%)

Query: 18  LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV 77
           L++  LR+EFR++P + RVA G+ AL+ECG PRG PEP + W+KNG  ++   +KR+R+V
Sbjct: 182 LQVAFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIV 241

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
           DG NLAIQ++R++DDGRYQCVVKNV GTRES  A L+V V+P++IRGP++ T   GS +V
Sbjct: 242 DGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVV 301

Query: 138 FECSVGGDAVLTVHWKRL--GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           F+C +GGD +  V W+R   G  MP  R+ VL  RSL+L DV LED GEY CEA+NAVG 
Sbjct: 302 FQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGG 361

Query: 196 ISASATLTVQS 206
           I+A+  LTV +
Sbjct: 362 ITATGILTVHA 372

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
FB|FBgn0041097	1342	robo3 "robo3" [Drosophila mela	0.824	0.132	0.588	2.4e-51
FB|FBgn0002543	1463	lea "leak" [Drosophila melanog	0.833	0.123	0.560	5.9e-51
FB|FBgn0005631	1429	robo "roundabout" [Drosophila	0.833	0.125	0.491	4.8e-41
UNIPROTKB|Q8UVD7	1614	robo1 "Roundabout-1" [Xenopus	0.824	0.110	0.435	1.4e-34
UNIPROTKB|F1SK64	1526	ROBO1 "Uncharacterized protein	0.824	0.116	0.427	5.8e-34
UNIPROTKB|F1N279	1483	ROBO1 "Uncharacterized protein	0.819	0.119	0.430	7.1e-34
MGI|MGI:1274781	1612	Robo1 "roundabout homolog 1 (D	0.819	0.109	0.430	8e-34
UNIPROTKB|F1Q2N4	1622	ROBO1 "Uncharacterized protein	0.819	0.109	0.430	8.1e-34
UNIPROTKB|Q9Y6N7	1651	ROBO1 "Roundabout homolog 1" [	0.819	0.107	0.430	8.3e-34
UNIPROTKB|F1N739	1683	ROBO1 "Uncharacterized protein	0.819	0.105	0.430	8.5e-34

FB|FBgn0041097 robo3 "robo3" [Drosophila melanogaster (taxid:7227)]

 Score = 545 (196.9 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 106/180 (58%), Positives = 130/180 (72%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR++P++ R+A GDTALLEC  PRG PEPT+ WKK G  +D E SKR+R+VDG NLAIQD
Sbjct:   123 FRLEPQNTRIAQGDTALLECAAPRGIPEPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQD 182

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +R+TD+G+YQC+ KN  G RES+ A L+V VKPYIIRGP D TV  G+ + F C VGGD 
Sbjct:   183 ARQTDEGQYQCIAKNPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDP 242

Query:   147 VLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
             +  V W R  S   MP DR+SVL  RSL+L  V + D GEY CEA+N VG I+A  TLTV
Sbjct:   243 MPDVLWLRTASGGNMPLDRVSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTLTV 302

GO:0007419 "ventral cord development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0008038 "neuron recognition" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

FB|FBgn0002543 lea "leak" [Drosophila melanogaster (taxid:7227)]

 Score = 542 (195.9 bits), Expect = 5.9e-51, P = 5.9e-51
 Identities = 102/182 (56%), Positives = 135/182 (74%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR++P + RVA G+ AL+ECG PRG PEP + W+KNG  ++   +KR+R+VDG NLAIQ+
Sbjct:   191 FRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQE 250

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +R++DDGRYQCVVKNV GTRES  A L+V V+P++IRGP++ T   GS +VF+C +GGD 
Sbjct:   251 ARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDP 310

Query:   147 VLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
             +  V W+R  S   MP  R+ VL  RSL+L DV LED GEY CEA+NAVG I+A+  LTV
Sbjct:   311 LPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGITATGILTV 370

Query:   205 QS 206
              +
Sbjct:   371 HA 372

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0007419 "ventral cord development" evidence=IMP

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0004872 "receptor activity" evidence=TAS

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=TAS

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0042685 "cardioblast cell fate specification" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

FB|FBgn0005631 robo "roundabout" [Drosophila melanogaster (taxid:7227)]

 Score = 449 (163.1 bits), Expect = 4.8e-41, P = 4.8e-41
 Identities = 92/187 (49%), Positives = 121/187 (64%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGT 80
             FRV+PK  RVA G+TALLECGPP+G PEPTL+W K+G P+D      F  S R+R+VDG 
Sbjct:   191 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 250

Query:    81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFEC 140
             NL I +    D+G Y+C+ +N+ GTRES+ A L V VKPY ++ PKD  +  G    F C
Sbjct:   251 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKPYFMKEPKDQVMLYGQTATFHC 310

Query:   141 SVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
             SVGGD    V WK+    +P  R  +L   +SL++S++   D G YVCEA N VG+ISA 
Sbjct:   311 SVGGDPPPKVLWKKEEGNIPVSRARILHDEKSLEISNITPTDEGTYVCEAHNNVGQISAR 370

Query:   200 ATLTVQS 206
             A+L V +
Sbjct:   371 ASLIVHA 377

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0044295 "axonal growth cone" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP;TAS

GO:0031982 "vesicle" evidence=IDA

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0008038 "neuron recognition" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009649 "entrainment of circadian clock" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IGI

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

UNIPROTKB|Q8UVD7 robo1 "Roundabout-1" [Xenopus laevis (taxid:8355)]

 Score = 389 (142.0 bits), Expect = 1.4e-34, P = 1.4e-34
 Identities = 78/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G PID +  +R+  + G  L I  
Sbjct:   134 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGTPIDDDKDERIT-IRGGKLMITY 192

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  +R P +  V+    + F+C   GD 
Sbjct:   193 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFLRRPSNMAVTVDDSVEFKCEARGDP 252

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASA LTVQ
Sbjct:   253 VPTVRWRKDDGDLPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASAVLTVQ 311

GO:0007411 "axon guidance" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

UNIPROTKB|F1SK64 ROBO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 383 (139.9 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 77/180 (42%), Positives = 106/180 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:    53 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 110

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:   111 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 170

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ+
Sbjct:   171 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVMAGDMGSYTCVAENMVGKAEASATLTVQA 230

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N279 ROBO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 7.1e-34, P = 7.1e-34
 Identities = 77/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:     6 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 63

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:    64 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 123

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ
Sbjct:   124 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQ 182

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1274781 Robo1 "roundabout homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 8.0e-34, P = 8.0e-34
 Identities = 77/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:   133 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 190

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:   191 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 250

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ
Sbjct:   251 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQ 309

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1Q2N4 ROBO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 8.1e-34, P = 8.1e-34
 Identities = 77/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:   143 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 200

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:   201 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 260

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ
Sbjct:   261 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVMAGDMGSYTCVAENMVGKAEASATLTVQ 319

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Y6N7 ROBO1 "Roundabout homolog 1" [Homo sapiens (taxid:9606)]

 Score = 382 (139.5 bits), Expect = 8.3e-34, P = 8.3e-34
 Identities = 77/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:   172 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 229

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:   230 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 289

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ
Sbjct:   290 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQ 348

GO:0030673 "axolemma" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0030275 "LRR domain binding" evidence=IPI

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0007399 "nervous system development" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0008046 "axon guidance receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IMP

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

UNIPROTKB|F1N739 ROBO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 8.5e-34, P = 8.5e-34
 Identities = 77/179 (43%), Positives = 105/179 (58%)

Query:    27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct:   205 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRGGKLMITY 262

Query:    87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
             +RK+D G+Y CV  N+ G RES  A L VL +P  ++ P +  V+      F+C   GD 
Sbjct:   263 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDP 322

Query:   147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             V TV W++    +P+ R  +    +L++  V   D G Y C AEN VGK  ASATLTVQ
Sbjct:   323 VPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQ 381

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-35
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-23
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-19
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-16
smart00409	85	smart00409, IG, Immunoglobulin	2e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-16
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-13
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-12
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	2e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-12
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	7e-12
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-11
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	3e-11
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	3e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-10
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-10
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	9e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-09
smart00409	85	smart00409, IG, Immunoglobulin	1e-09
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-09
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-09
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-09
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	9e-09
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-08
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-08
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	3e-08
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	4e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	9e-08
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-07
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	1e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-07
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-07
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	1e-06
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	1e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	6e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	9e-06
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	9e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-05
cd04970	85	cd04970, Ig6_Contactin_like, Sixth Ig domain of co	2e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	3e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-05
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	4e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	4e-05
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	6e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	6e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	8e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	8e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	8e-05
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	1e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-04
cd05873	87	cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like	1e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	3e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-04
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	4e-04
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	5e-04
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	5e-04
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	5e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	7e-04
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	7e-04
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	7e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.001
cd04970	85	cd04970, Ig6_Contactin_like, Sixth Ig domain of co	0.001
PHA02785	326	PHA02785, PHA02785, IL-beta-binding protein; Provi	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.002
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.002
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	0.002
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.003
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	0.003
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	0.003
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.004
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.004
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.004

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score =  120 bits (302), Expect = 1e-35
 Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
           V+P   +VA G+ A+LEC PPRGHPEPT+ W+K+G P++ +N +R+R+VD  NL I ++R
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN-ERVRIVDDGNLLIAEAR 59

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRV 115
           K+D+G Y+CV  N+ G RES  A L V
Sbjct: 60  KSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 88.2 bits (219), Expect = 3e-23
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195
           + F+C VGGD V TV W++    +P+ R  +L  +SL++ +V   D G Y CEAEN VGK
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 196 ISASATLTV 204
           I ASA+LTV
Sbjct: 61  IEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 77.3 bits (191), Expect = 7e-19
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQL 174
           P   + PKD  V  G    F C+V GD   TV W + G  +    R  V       +L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
           S+V+ +D G+Y C A N+ G+  ASA LTV
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 70.6 bits (173), Expect = 2e-16
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--PEDRMSVLPSR---SLQLSDVRL 179
           P   TV  G  +   C   G     V W + G  +     R SV  S    +L +S+V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 180 EDGGEYVCEAENAVGKISASATLTV 204
           ED G Y C A N+ G  S+  TLTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 70.6 bits (173), Expect = 2e-16
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--PEDRMSVLPSR---SLQLSDVRL 179
           P   TV  G  +   C   G     V W + G  +     R SV  S    +L +S+V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 180 EDGGEYVCEAENAVGKISASATLTV 204
           ED G Y C A N+ G  S+  TLTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 69.6 bits (171), Expect = 7e-16
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 82
           +F  +PK   V  G++A   C    G P+PT+ W K+G P+   +S R ++        L
Sbjct: 2   KFTQKPKDVEVQEGESARFTC-TVTGDPDPTVSWFKDGQPL--RSSDRFKVTYEGGTYTL 58

Query: 83  AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            I + +  D+G+Y CV  N AG  E++ A L V
Sbjct: 59  TISNVQPDDEGKYTCVATNSAGEAEAS-AELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 4e-13
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192
           G  +   C   G+ V  + W + G  +PE    V    +L +  V LED G Y C AEN+
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 193 VG 194
            G
Sbjct: 62  AG 63

Length = 63

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 42  ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101
           A + C    G+P+P + W K+  P+D  ++ R++ +    L I++S ++D G+Y+CV  N
Sbjct: 1   ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATN 59

Query: 102 VAGTRESTDAVLRV 115
            AGTR S  A L V
Sbjct: 60  SAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 60.2 bits (146), Expect = 2e-12
 Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD-GRYQCVVKNVAGTRES 108
           RG P PT  W  NG  ID E   R  LV G NL I +  K  D GRYQC+  N+ GT  S
Sbjct: 29  RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG-NLVISNPSKAKDAGRYQCLASNIVGTVLS 87

Query: 109 TDAV 112
            +A 
Sbjct: 88  REAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 58.2 bits (141), Expect = 7e-12
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 98
           G +  L C P  G+P P + W K+G P+   N     +  G+ L I+     D G Y CV
Sbjct: 2   GQSVTLTC-PAEGNPVPNITWLKDGKPLPESNR---FVASGSTLTIKSVSLEDSGLYTCV 57

Query: 99  VKNVAG 104
            +N AG
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 59.2 bits (143), Expect = 7e-12
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 29  VQPKSQRVAA----GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 84
           ++ +   V A    G +  L C    G PEPT+ W K+G PI+    K     DG+ + I
Sbjct: 4   IRARQSEVNATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTI 62

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
            D  K D+  Y C+ +N AG +E+    L+V  K
Sbjct: 63  LDVDKLDEAEYTCIAENKAGEQEAE-IHLKVFAK 95

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDGGEYVCEAENAVG 194
           +V EC   G     VHW R+   +  +R   L  +++LQL +V   D GEYVC AEN+ G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 195 KISASATLTVQ 205
                 T+TV+
Sbjct: 61  SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 27/87 (31%), Positives = 43/87 (49%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
             I+  PKDT    G  +  EC   G+ V  + W+++  +MP      +    L++ +++
Sbjct: 2   SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQ 61

Query: 179 LEDGGEYVCEAENAVGKISASATLTVQ 205
            ED G Y CEAEN  GK +    + VQ
Sbjct: 62  FEDEGTYECEAENIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109
           RG+P PT  W +NG  ID E+  R  L+DG  +    S   D GRYQC+  N  G+  S 
Sbjct: 29  RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR 88

Query: 110 DAVLR 114
           +A+L+
Sbjct: 89  EALLQ 93

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.1 bits (137), Expect = 3e-11
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR--------SLQLSDVRLEDGGEYVC 187
           +   C   G    T+ W + G  +P   ++ + S         +L +S+V LED G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 188 EAENAVGKISASAT 201
            A N+ G +SAS T
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 42  ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-----LAIQDSRKTDDGRYQ 96
             L C    G P PT+ W KNG P+      R+R   GT+     L I +    D G Y 
Sbjct: 1   VTLTC-LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 97  CVVKNVAGTREST 109
           CV  N AGT  ++
Sbjct: 60  CVASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----SKRLRLVDGT--NLA 83
            P    V+ GD A L C    G P PT+ W KNG P++ +     S R+ L  G+   L 
Sbjct: 7   HPSDLIVSKGDPATLNC-KAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLR 65

Query: 84  IQDSRK--TDDGRYQCVVKNVAGTRESTDAVLRV 115
           +   RK  +D+G Y CV  N  G   S +A L V
Sbjct: 66  VVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 43  LLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102
           ++EC  P+  P+PT+ W K    +   NS R+ +    +L I +  K+D+G+Y C  +N 
Sbjct: 5   IIEC-KPKAAPKPTISWSKGTELL--TNSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61

Query: 103 AGTRESTDAVLRV 115
            G   ST   L V
Sbjct: 62  FGKANST-GSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 52.8 bits (127), Expect = 9e-10
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDGGEYVCEAENAVG 194
           ++ EC   G     + W ++G  +P DR      +++L++ +V  ED GEY C A N++G
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Query: 195 KISASATLTVQ 205
               + ++TV+
Sbjct: 61  SARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
           P S  V  G++  L C    G P P + W K G  +  E+ +      G+   L I +  
Sbjct: 1   PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRV 115
             D G Y C   N +G+  S    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSG-TTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
           P S  V  G++  L C    G P P + W K G  +  E+ +      G+   L I +  
Sbjct: 1   PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRV 115
             D G Y C   N +G+  S    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSG-TTLTV 85

Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 139 ECSVGGDAVLTVHWKRLGS----AMPEDRMSVLPSRS-LQLSDVRLEDGGEYVCEAENAV 193
           EC+  G     + W++ G     A  E RM V+P      + DV++ED G Y C A+N  
Sbjct: 4   ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTA 63

Query: 194 GKISASATLTV 204
           G ISA+ATLTV
Sbjct: 64  GSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDGG 183
             DT    GS + +EC   G+      W + G  +  E+R+ V  +  L+++ + L D G
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AGDLRITKLSLSDSG 64

Query: 184 EYVCEAENAVGKISASATLTV 204
            Y C AEN  G I ASA L V
Sbjct: 65  MYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAEN 191
           G  + F C   G     + W + GS +  DR   VL S +L++S V L D G+Y C+A N
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61

Query: 192 AVGKISASATLTV 204
            VG     A LTV
Sbjct: 62  IVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 50.3 bits (120), Expect = 9e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194
           IVFEC V G    TV W + G   +P D   ++   +LQ+  +   D G Y C AEN VG
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 195 KISASATLTV 204
            + A A L +
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVLPSRSLQLSDVRLEDGG 183
           G  + F+C   G+    + W++ GS              R SV  +  L +++V+  D G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 184 EYVCEAENAVGKISASATLTV 204
            Y+C+  N  G I   A L V
Sbjct: 61  YYICQTLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS------VLPSRSL 172
           P I+  P D  VS G      C   G    T+ W + G  +  D+        VLPS SL
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 173 QLSDV-----RLEDGGEYVCEAENAVGK-ISASATLTV 204
               V        D G YVC A N++G+ +S +A+L V
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 176
           KP I       +V++G  +   CS  GG    T+ W R GS             +L LS 
Sbjct: 1   KPVITV-SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSS 59

Query: 177 VRLEDGGEYVCEAEN 191
           V  ED G Y C A N
Sbjct: 60  VTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 98
           G+T  L+C    G P+PT+ W+ NG PI+       R VDG  L + + +  D   YQC 
Sbjct: 1   GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCN 59

Query: 99  VKNVAGT 105
             NV G 
Sbjct: 60  ASNVHGY 66

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 27  FRVQPKSQRVAAGDT---ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 83
           F  QP S     G       L C   R  P  T  WK NG  I F    R  LV G NL 
Sbjct: 4   FEEQPSSLLFPEGSPEEKVTLGC-RARASPPATYRWKMNGTEIKFAPESRYTLVAG-NLV 61

Query: 84  IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLR 114
           I + +K  D G YQC+  N  GT  S +A LR
Sbjct: 62  INNPQKARDAGSYQCLAINRCGTVVSREANLR 93

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD-GRYQCVVKNVAGTRES 108
           R +P P   W+KN   ID  N  R  +V G NL I +  K  D GRY C+V N+ G   S
Sbjct: 29  RANPFPIYKWRKNNLDIDLTN-DRYSMVGG-NLVINNPDKYKDAGRYVCIVSNIYGKVRS 86

Query: 109 TDAVL 113
            +A L
Sbjct: 87  REATL 91

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGE 184
           P  T V  G  +   CS  G+      W + G  +   +            +V  ED G 
Sbjct: 6   PSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPNVSAEDSGT 59

Query: 185 YVCEAEN-AVGKISASATLTV 204
           Y C A N   GK S   TLTV
Sbjct: 60  YTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 47.6 bits (113), Expect = 9e-08
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109
           +G PEPT+ W K+G  +    S +  +     LAI+D    D GRY+CV +N  G   S 
Sbjct: 8   QGDPEPTITWNKDG--VQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASV 64

Query: 110 DAVL 113
             VL
Sbjct: 65  SMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 42  ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCV 98
           A LEC    GHP P + W+K+G   DF  ++  R+    +     I D +  D G Y C 
Sbjct: 1   ARLECAA-TGHPTPQIAWQKDGG-TDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCT 58

Query: 99  VKNVAGTRESTDAVLRVL 116
            +N AG+  S +A L VL
Sbjct: 59  AQNTAGSI-SANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY 185
           KDT    G  +  EC   G+ V  + W+++   MP      +    L++ +++ ED G Y
Sbjct: 9   KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTY 68

Query: 186 VCEAENAVGKISASATLTVQ 205
            CEAEN  GK    A + VQ
Sbjct: 69  ECEAENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
           +  + P    V  G+   L C    G+P P   W K+G P+              N    
Sbjct: 1   KPVLTPSPTVVFEGEDVTLTC-SAPGNPPPNYTWYKDGVPLS----------SSQNGFFT 49

Query: 86  DS-RKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            +    D G Y CV  N  G + S    L V
Sbjct: 50  PNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQLSD 176
           I+  P+  TVS G    F C V G+   TV W R G  +   +   + S     + ++S 
Sbjct: 6   ILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISK 65

Query: 177 VRLEDGGEYVCEAENAVGKISASATLT 203
           V++ D G Y    EN+ GK  A  TLT
Sbjct: 66  VQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
           G P P L W KNG  I  + SK+L L+ +G+ L I + R  D G Y C+ KN AG  E
Sbjct: 9   GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAEN 191
           G +I+ EC        T+ W +    +    R+ + P  SL++ +V   D G+Y C AEN
Sbjct: 2   GDVII-ECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 192 AVGKISASATLTV 204
             GK +++ +L+V
Sbjct: 61  FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDG 93
           V AG T  L+C P  G+P PT+ W K+G P   E+      V      L ++    +D G
Sbjct: 6   VPAGSTVRLKC-PASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64

Query: 94  RYQCVVKNVAGTREST 109
           +Y C+V+N  G+   T
Sbjct: 65  KYTCIVENKYGSINHT 80

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL------GSAMPEDRMSV---L 167
           V+P I      T V    I +  C   GD +  + W+R       G    + R+ V    
Sbjct: 1   VQPKITYLENQTAVELEQITL-TCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA 59

Query: 168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
              SL L DV+L D G Y CEA N +G    S  L V
Sbjct: 60  RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 113 LRVLVKPYIIRGPKDTTVSAGSIIVFEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS 171
           ++V V+      P+   V  G+ + F C +       T+ W R+G  +P   M    +  
Sbjct: 1   IQVTVEE-----PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDF--NGI 53

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATL 202
           L + +V+L D G YVC   N +    A+ATL
Sbjct: 54  LTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 125 PKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLED 181
           P DT V+ G + V ECS   G    TV W++ G  +  D  R+ ++   +L +++ R  D
Sbjct: 3   PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSD 62

Query: 182 GGEYVCEAENAVG-KISASATLTV 204
            G Y C A N VG + SA+A L+V
Sbjct: 63  EGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS---RSLQLSDVRLEDGGEYVCEAENA 192
           +   C + G    T  W R G+ + + + +   S   R+L L     +D G Y C A NA
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 193 VGKISASATLTV 204
            G + +S   T+
Sbjct: 61  FGSVCSSQNFTL 72

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSD 176
           + +  P D     G  +V  CS  G+    + WK+ G  +     +R   LP+ SL ++ 
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 177 VR-----LEDGGEYVCEAEN-AVGKI-SASATLTV 204
           V        D G Y C A+N ++G I S +A LTV
Sbjct: 61  VVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
                   G +   EC    G+P P   W KNG P+  EN  R+ +  G  L I     +
Sbjct: 6   ISDTEADIGSSLRWEC-KASGNPRPAYRWLKNGQPLASEN--RIEVEAGD-LRITKLSLS 61

Query: 91  DDGRYQCVVKNVAGT 105
           D G YQCV +N  GT
Sbjct: 62  DSGMYQCVAENKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDS 87
           V PK      G    LEC    G+P P + W+K +G       S     + G  L I + 
Sbjct: 6   VFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMP----SSAEISMSGAVLKIPNI 60

Query: 88  RKTDDGRYQCVVKNVAG 104
           +  D+G Y+C  +N+ G
Sbjct: 61  QFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQLSD 176
            + GP  T V  G      C+  G  +  V W   G  + + R   L       +LQLS+
Sbjct: 3   PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSN 62

Query: 177 VRLEDGGEYVCEAENAVGKISASATLTV 204
           +  E      C AEN VG+ + S  +TV
Sbjct: 63  ITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEA 189
           G     +C   G    T+ W+  G     +P D    +   +L LS+V+  D   Y C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 190 ENAVGKISASATLTV 204
            N  G + A+A + V
Sbjct: 61  SNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 51  GHPEPTLVWKKNGH---PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
           G P PT+ W KNG    P D+      ++V   NL +    K+D+G YQC+ +N  G  +
Sbjct: 10  GKPTPTVKWVKNGDMVIPSDY-----FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQ 64

Query: 108 ST 109
           + 
Sbjct: 65  AG 66

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDGGE 184
           V AGS +  +C   G+   T+ W + G     E R+     R    +L L  V   D G+
Sbjct: 6   VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65

Query: 185 YVCEAENAVGKISASATLTV 204
           Y C  EN  G I+ +  + V
Sbjct: 66  YTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 48  PPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCVVKNVAG 104
           P  G P PT+ W K+G     + S R+++      T+L I+++ ++D G+Y   +KN AG
Sbjct: 7   PISGRPTPTVTWSKDG--KPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG 64

Query: 105 TRESTDAVLRVLV 117
            + +T   + V V
Sbjct: 65  EKSAT---INVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 56  TLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA-GTREST 109
           T  W  NG PIDF+       +        +L I++++    G+Y C  + V      S 
Sbjct: 18  TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77

Query: 110 DAVLR 114
           D ++R
Sbjct: 78  DLIVR 82

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 136 IVFECSVGGDAVLTVHWKRL-GSAMPED--------RMSVLPSRSLQLSDVRLEDGGEYV 186
           +   CS  G    T+ WK   G   P+         R+ +L + SL +  V  ED G Y+
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 187 CEAENAVG-KISASATLTV 204
           C+  N VG   S S  LTV
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV-- 166
           V+P+II+   +TTV  G+  +  C   G+ +  + WKR         G   P+ R+ V  
Sbjct: 1   VQPHIIQLKNETTVENGAATLS-CKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG 59

Query: 167 -LPSRSLQLSDVRLEDGGEYVCEAENAVG 194
                SL + DV+L D G Y CEA + +G
Sbjct: 60  QHGESSLHIKDVKLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 43  LLECGPPRGHPEPTLVWKKNGHPIDFENSKRL--RLVDGT-NLAIQDSRKTDD--GRYQC 97
           +++C   +G+P PT  W +NG   D E   R+  +   GT  +   +  + +D  G YQC
Sbjct: 2   VIKC-EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60

Query: 98  VVKNVAGTRESTDAVLR 114
              N  GT  S +  LR
Sbjct: 61  YASNELGTAISNEIHLR 77

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDGGE 184
           V A + + F C   G+   T+ W + G     E R+     R    SL +  V   D G 
Sbjct: 6   VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 65

Query: 185 YVCEAENAVGKISASATLTV 204
           Y C  EN  G I+ +  L V
Sbjct: 66  YTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 98
           G+TA L+C    G P P + W  NG PI+  +    R V    L + D + +D   YQC 
Sbjct: 1   GETARLDC-QVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCE 59

Query: 99  VKNVAG 104
            +N  G
Sbjct: 60  ARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDGGEYVC 187
           GS +   CSV G   + V W + G  + E              +L +S+V  ED G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 188 EA 189
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 140 CSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA 198
           CS  GD   T+ W + G  + E  +  + P   L + DV + D G Y C A N +G  S 
Sbjct: 5   CSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASV 64

Query: 199 SATLT 203
           S  L+
Sbjct: 65  SMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-----DFENSKRLRLVDGTNLAIQ 85
           P+SQ V  G      C      P  TLVW + G  +     DF             L I+
Sbjct: 8   PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDF----------NGILTIR 57

Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVL 113
           + + +D G Y C   N+  T E+T A L
Sbjct: 58  NVQLSDAGTYVCTGSNMLDTDEAT-ATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVDGTNLAIQDSRKTDD 92
           V A +T    C P  G+P PT+ W KNG     E+     ++R    + L ++    +D 
Sbjct: 6   VPAANTVKFRC-PAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWS-LIMESVVPSDK 63

Query: 93  GRYQCVVKNVAGTREST 109
           G Y CVV+N  G+   T
Sbjct: 64  GNYTCVVENEYGSINHT 80

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 44  LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN---LAIQDSRKTDDGRYQCVV 99
           LEC      P P + WKKN   + + N+ R+ L  D      L IQ++ K D G Y    
Sbjct: 3   LEC-RVSAIPPPQIFWKKNNEMLTY-NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 100 KNVAG 104
            N AG
Sbjct: 61  VNEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 50  RGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
            G P PT++W+K     P       R  ++D  +L I++    D+G Y C  +N+ G  E
Sbjct: 8   GGDPVPTVLWRKEDGELPK-----GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62

Query: 108 STDAVLRV 115
           ++ A L V
Sbjct: 63  AS-ASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101
           + +P P + W KNG  I   + K      G +L I+D  + D G Y  V+ N
Sbjct: 8   KAYPPPEIQWYKNGKLI---SEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTN 56

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQ 96
           G  A L C   RG PEP + W     P      NS R  + D   L I  +   D G + 
Sbjct: 1   GQRATLRC-KARGDPEPAIHWIS---PDGKLISNSSRTLVYDNGTLDILITTVKDTGSFT 56

Query: 97  CVVKNVAGTRESTDAV 112
           C+  N AG  E+T  V
Sbjct: 57  CIASNAAG--EATATV 70

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
          P+ +    G+ A L+C P        +VWK +G  +  E++K L   DG  L I ++ + 
Sbjct: 3  PRQRTFKLGNNAELKCSPKSNLAR--VVWKFDGKVLTPESAKYLLYRDG--LLIFNASEA 58

Query: 91 DDGRYQCV 98
          D GRYQC+
Sbjct: 59 DAGRYQCL 66

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloprotease-dependent process. Sem4D may mediate its effects in its membrane bound form, and/or its cleaved form. Length = 87

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATL 202
           LQ++  +L D GEY C  EN +G  + +A +
Sbjct: 45  LQINKAKLADSGEYTCVVENILGNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 98
           G   ++EC  P+  P+P   W K    +   N+ R+ + D  +L I +  K D+G Y C 
Sbjct: 1   GGRVIIEC-KPKAAPKPKFSWSKGTELL--VNNSRISIWDDGSLEILNITKLDEGSYTCF 57

Query: 99  VKNVAGTRESTDAVLRV 115
            +N  G   ST  VL V
Sbjct: 58  AENNRGKANST-GVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDD 92
           V AG+   L+  P  G P PT+ W +       E   R+R+    D ++  I+ + + D+
Sbjct: 7   VVAGNKLRLDV-PISGEPAPTVTWSRGDKAFT-ETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 93  GRYQCVVKNVAG 104
           G Y   V N  G
Sbjct: 65  GVYTITVTNPVG 76

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSR- 170
            KP I      T +     I   C   GD + ++ W+     +  +  +     V+ S  
Sbjct: 1   AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA 60

Query: 171 ---SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV 211
              SL L  ++  D GEY+C A N +G+ S       QS YL+V
Sbjct: 61  RVSSLTLKYIQYTDAGEYLCTASNTIGQDS-------QSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 17/89 (19%)

Query: 133 GSIIVFECSVGGDAVLTVHW-KRL---GSAMPEDRMS---VLPSRS----------LQLS 175
           GS + F C V  DA   + W K +   GS    D +    VL              L L 
Sbjct: 1   GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLR 60

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTV 204
           +V  +D GEY C A N++G    SA LTV
Sbjct: 61  NVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 133 GSIIVFECSVGGDAVLTVHWKR----LGSAMPEDR---MSVLPS----------RSLQLS 175
           GS + F C V  DA   + W +     GS    D    ++VL +            L L 
Sbjct: 1   GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTV 204
           +V  ED GEY C A N++G    SA LTV
Sbjct: 61  NVTFEDAGEYTCLAGNSIGISHHSAWLTV 89

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLPSRS---LQL 174
           P II+ P+D  V AG  +   C V G   +T  W +    + E   + +  + +   L +
Sbjct: 1   PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60

Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           ++ + E  G Y  E EN +G   A   LTV  K
Sbjct: 61  TEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDK 93

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 53  PEPTLVWKKNGHPIDFENSKRLRLV-DGT---NLAIQDSRKTDDGRYQCVVKNVAG 104
           P P + WK+N   + + N+ R+ L  D +    L I++  K D G Y     N AG
Sbjct: 11  PPPKIFWKRNNEMVQY-NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAG 65

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQ 85
           +P+S  V+ G++A   C    G P PT+ W + G  I    S +   +  T       I 
Sbjct: 9   KPRSLTVSEGESARFSCDVD-GEPAPTVTWMREGQII---VSSQRHQITSTEYKSTFEIS 64

Query: 86  DSRKTDDGRYQCVVKNVAGTRES 108
             + +D+G Y  VV+N  G +E+
Sbjct: 65  KVQMSDEGNYTVVVENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTD--DGRYQCVVKNVAG 104
           +G P P+  W +NG   D +   ++ +   T    + I +  K +  +G YQC  +N  G
Sbjct: 8   KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERG 67

Query: 105 TRESTDAVLR 114
              S + V+R
Sbjct: 68  AAVSNNIVIR 77

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 104
           G+P+P++ W  NG PI+   +   R VDG  +     ++     YQC   N  G
Sbjct: 12  GNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNL--A 83
           F  +P       G   +L C    G P P + WKK+G  ++   + +R +L +G+ L  +
Sbjct: 2   FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 84  IQDSR--KTDDGRYQCVVKN 101
           +  S+  K D+G YQCV +N
Sbjct: 61  VVHSKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
           L + + +L+  G+Y C A+  V  +SASA L V
Sbjct: 49  LMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85

>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 32/174 (18%)

Query: 57  LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG--TRESTDAV-- 112
           ++W   GH     N KRL+      + I+D RK D G Y CV+K + G  T   T  V  
Sbjct: 158 IIWS--GHR-RLRN-KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKL 213

Query: 113 -LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT---VHWKRLGSAMPED------ 162
            +R  + P  ++ P+    S GS +   C V      T   V W   G    ED      
Sbjct: 214 EVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDG 273

Query: 163 RMS------------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
           R+S            V+ SR L ++ V+ ED   + C A   +  IS + T+++
Sbjct: 274 RISVANKIYTTDKRRVITSR-LNINPVKEEDATTFTCMA-FTIPSISKTVTISI 325

Length = 326

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVKNVAGTR 106
           G P P + W+ N   +   +S R+ +      GT L I+D +++D G Y C   N  G  
Sbjct: 12  GVPTPIINWRLNWGHV--PDSARVSITSEGGYGT-LTIRDVKESDQGAYTCEAINTRGMV 68

Query: 107 EST-DAVLRV 115
               D +L V
Sbjct: 69  FGIPDGILTV 78

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 44  LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101
           L C    G P PT+ W +NG               G+ L +      D G Y CV  N
Sbjct: 20  LTCSAEGGPPPPTISWYRNGS---ISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAM--PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAE 190
           GS +  +C   G+    + W +    +   E   S     +L L +++ ED G+Y C   
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 191 NAVGKISASATLTV 204
           N  G+I+A+  + V
Sbjct: 69  NRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 110
           G+P P + W K+  P+        R    T L++++ +  D G+Y C V N AG   +T 
Sbjct: 20  GNPRPDITWLKDNKPLTPTEIGESRKKKWT-LSLKNLKPEDSGKYTCHVSNRAGEINATY 78

Query: 111 AV 112
            V
Sbjct: 79  KV 80

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVG 194
           +   C   G A   + W   GS +   R+ +   +R+L  ++V   D G Y CEA N V 
Sbjct: 21  VTLTCEAEGQATY-IWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVS 79

Query: 195 KI-SASATLTV 204
            + S    L V
Sbjct: 80  NMTSDPYILNV 90

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRES 108
           G P+P + W KN   +   +   +++  G   +L I+     D G+Y  VVKN  G  E+
Sbjct: 27  GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ET 85

Query: 109 TDAVLRV 115
            D  + V
Sbjct: 86  VDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRK 89
           K   V  G++  LEC P       ++VW   G P+  +     RL+     L I+    
Sbjct: 3  EKVVTVVEGNSVFLECSPKS--NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSP 60

Query: 90 TDDGRYQCV 98
           D G Y C 
Sbjct: 61 ADAGVYTCQ 69

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 43  LLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR---KTDD--GRYQC 97
           ++EC   +G+P PT  W +NG   +     R+ +   +   + D     + +D  G YQC
Sbjct: 2   IIEC-EAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQC 60

Query: 98  VVKNVAGTRESTDAVLR 114
             +N  GT  S   +L+
Sbjct: 61  FARNNLGTALSNKILLQ 77

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 43  LLECGPPRGHPEPTLVWKKNGHP-----IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQC 97
           LLEC    G P P + W K G         FEN  +        L I +  + DDG Y+C
Sbjct: 2   LLEC-IAEGLPTPEISWIKIGGELPADRTKFENFNK-------TLKIDNVSEEDDGEYRC 53

Query: 98  VVKNVAGT 105
              N  G+
Sbjct: 54  TASNSLGS 61

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 39  GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 98
           G T    C   +G+P+P + W K G  +  +  + L L  GT L I      D G+Y+C 
Sbjct: 2   GQTVDFLC-EAQGYPQPVIAWTKGGSQLSVDR-RHLVLSSGT-LRISRVALHDQGQYECQ 58

Query: 99  VKNVAGTRESTDAVLRV 115
             N+ G+ + T A L V
Sbjct: 59  AVNIVGS-QRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 51  GHPEPTLVW---KKNGHPIDFE---NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 104
           G+P PT+VW   K  GHP        + R++L+   +L I+   + D G Y C V N  G
Sbjct: 9   GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVG 68

Query: 105 TRESTDAVLRV 115
              S   VL V
Sbjct: 69  ADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG3513|consensus	1051		99.97
KOG3513|consensus	1051		99.96
KOG4222|consensus	1281		99.94
KOG4221|consensus	1381		99.94
KOG4194|consensus	873		99.93
KOG4194|consensus	873		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.92
KOG4221|consensus	1381		99.9
PHA02785	326	IL-beta-binding protein; Provisional	99.89
PHA02785	326	IL-beta-binding protein; Provisional	99.87
KOG4222|consensus	1281		99.85
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.8
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.8
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.73
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.72
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.71
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.7
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.69
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.68
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.68
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.68
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.68
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.68
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.68
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.67
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.67
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.67
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.67
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.67
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.67
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.67
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.66
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.66
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.66
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.66
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.66
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.66
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.65
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.65
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.65
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.64
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.64
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.64
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.64
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.64
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.64
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.64
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.63
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.63
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.63
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.63
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.63
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.63
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.63
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.62
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.62
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.62
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.62
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.62
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.62
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.62
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.61
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.61
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.61
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.61
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.61
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.61
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.61
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.6
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.6
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.6
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.6
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.6
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.6
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.6
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.6
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.59
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.59
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.59
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.59
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.59
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.58
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.58
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.58
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.58
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.57
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.57
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.57
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.56
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.56
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.56
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.56
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.56
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.56
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.55
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.55
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.55
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.55
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.54
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.54
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.54
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.54
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.54
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.53
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.53
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.53
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.53
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.53
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.52
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.52
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.51
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.51
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.51
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.51
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.51
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.5
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.49
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.48
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.48
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.47
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.47
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.47
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.46
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.46
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.46
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.45
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.45
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.45
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.45
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.44
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.44
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.44
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.43
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.43
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.43
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.43
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.43
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.42
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.42
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.42
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.42
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.42
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.41
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.41
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.41
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.41
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.41
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.39
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.39
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.39
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.38
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.38
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.37
KOG3515|consensus	741		99.37
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.36
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.36
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.36
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.35
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.34
PHA03376	221	BARF1; Provisional	99.33
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.33
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.3
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.3
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.3
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.28
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.28
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.28
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.27
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.27
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.27
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.27
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.26
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.26
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.24
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.24
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.23
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.23
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.23
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.23
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.21
smart00409	86	IG Immunoglobulin.	99.2
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.2
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.2
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.2
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.19
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.19
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.17
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.16
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.15
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.14
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.13
smart00409	86	IG Immunoglobulin.	99.13
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.11
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.11
PHA02826	227	IL-1 receptor-like protein; Provisional	99.11
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.1
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.09
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.09
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.08
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.08
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.07
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.07
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.07
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.02
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	99.0
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.98
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.98
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.98
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.98
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.96
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.96
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.95
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.94
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.93
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.93
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.92
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.92
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.92
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.92
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.91
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.9
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.9
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.9
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.88
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.88
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.88
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.87
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.86
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.86
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.86
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.85
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.84
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.84
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.84
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.82
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.81
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.81
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.8
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.8
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.8
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.76
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.75
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.75
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.75
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.74
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.73
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.73
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.71
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.64
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.62
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.62
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.61
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.6
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.6
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.58
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.58
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.57
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.57
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.56
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.56
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.55
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.55
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.54
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.53
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.53
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.52
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.51
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.51
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.5
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.49
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.48
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.48
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.48
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.48
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.45
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.45
KOG3515|consensus	741		98.43
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.4
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.34
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.32
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.29
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.29
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.27
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.25
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.24
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.22
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.22
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.21
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.21
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.13
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.12
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.1
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.09
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.08
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.08
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.06
smart00407	75	IGc1 Immunoglobulin C-Type.	98.06
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.05
PHA02633	63	hypothetical protein; Provisional	98.04
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.03
smart00406	81	IGv Immunoglobulin V-Type.	98.02
KOG1480|consensus	909		98.02
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.01
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.99
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.98
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.95
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.94
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.93
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.92
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.92
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.91
smart00407	75	IGc1 Immunoglobulin C-Type.	97.9
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.9
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.89
KOG1480|consensus	909		97.87
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.84
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.81
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.79
PHA03376	221	BARF1; Provisional	97.77
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.77
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.75
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.74
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.73
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.7
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.69
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.64
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.6
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.6
smart00406	81	IGv Immunoglobulin V-Type.	97.59
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.58
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.55
PHA02982	251	hypothetical protein; Provisional	97.51
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.5
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.49
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.46
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.44
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.44
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.4
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.4
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.38
PHA02633	63	hypothetical protein; Provisional	97.27
PHA03269	566	envelope glycoprotein C; Provisional	97.27
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.16
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.13
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.11
PHA03270	466	envelope glycoprotein C; Provisional	97.11
PHA03270	466	envelope glycoprotein C; Provisional	97.11
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.07
PHA03271	490	envelope glycoprotein C; Provisional	97.06
PHA03273	486	envelope glycoprotein C; Provisional	96.95
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.94
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.8
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.72
KOG4597|consensus	560		96.66
PHA03271	490	envelope glycoprotein C; Provisional	96.65
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.57
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.55
PHA03042	286	CD47-like protein; Provisional	96.53
PHA03273	486	envelope glycoprotein C; Provisional	96.5
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.45
PHA03042	286	CD47-like protein; Provisional	95.21
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.11
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.07
PHA03269	566	envelope glycoprotein C; Provisional	94.76
KOG4597|consensus	560		93.83
PHA02865	338	MHC-like TNF binding protein; Provisional	93.36
PHA02982	251	hypothetical protein; Provisional	93.24
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	93.09
PHA03052	69	Hypothetical protein; Provisional	92.18
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.05
PHA03052	69	Hypothetical protein; Provisional	91.91
KOG0613|consensus	1205		91.86
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	91.77
PHA03283	542	envelope glycoprotein E; Provisional	91.69
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.62
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	91.42
PHA02914	500	Immunoglobulin-like domain protein; Provisional	91.27
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.07
KOG0613|consensus	1205		89.29
PHA03282	540	envelope glycoprotein E; Provisional	89.18
PHA03189	348	UL14 tegument protein; Provisional	87.98
KOG1026|consensus	774		87.72
PHA02865	338	MHC-like TNF binding protein; Provisional	87.62
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.1
PHA03240	258	envelope glycoprotein M; Provisional	87.0
PHA03286	492	envelope glycoprotein E; Provisional	85.98
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	85.02
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	83.96
PF02440	63	Adeno_E3_CR1: Adenovirus E3 region protein CR1; In	83.37

>KOG3513|consensus

Probab=99.97  E-value=1.4e-28  Score=195.03  Aligned_cols=199  Identities=26%  Similarity=0.509  Sum_probs=168.8

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD   91 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   91 (216)
                      ....+.|.|.. +|.+...+++..+..|++++|.|.+ .+.|.+.+.|+++|.++............++.|.|.+++..|
T Consensus       320 ~~~~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~d  397 (1051)
T KOG3513|consen  320 ATHSGHVTVYA-PPYWLQKPQDTEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESD  397 (1051)
T ss_pred             ceeeEEEEEec-CchhhcccceeEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEeccccc
Confidence            34556666665 4888889999999999999999999 799999999999999996444433334457789999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeec-ceEEeCCCce--eEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-CCCCCeeee
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVK-PYIIRGPKDT--TVSAGSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVL  167 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~~~~~~~~  167 (216)
                      +|.|.|.++|..|.. ...+.|.|... |.+...+...  .+..|..+.|.|...+.|.+.+.|.+++.. +..+++.+.
T Consensus       398 sg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~  476 (1051)
T KOG3513|consen  398 SGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRIL  476 (1051)
T ss_pred             CeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEEC
Confidence            999999999998876 45678888765 6666665555  666899999999999999999999998883 456778888


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      .+++|.|.+++.+|+|.|+|.|.|..|.......|.|++++.+...
T Consensus       477 edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~  522 (1051)
T KOG3513|consen  477 EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLA  522 (1051)
T ss_pred             CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEec
Confidence            9999999999999999999999999999999999999998877663

>KOG3513|consensus

Probab=99.96  E-value=6.3e-27  Score=185.70  Aligned_cols=186  Identities=27%  Similarity=0.495  Sum_probs=156.3

Q ss_pred             ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+... |.......|+.+.|.|.+ .+.|.|++.|+|.+...  ..........+..|.|.+++.+|+|.|.|.++|.
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~--~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~  316 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKP--PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENS  316 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCC--CCcceeeeccccEEEecccCcCCCeEEEEEEecc
Confidence            4555443 446788899999999998 89999999999987642  1111222334568999999999999999999999


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe---eeecCCeEEEecCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM---SVLPSRSLQLSDVRL  179 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~  179 (216)
                      .|.. .....+.|..+|.+...+.+..+..|+++.+.|.+.|.|.|++.|.+|+..+.....   .....++|.|.++..
T Consensus       317 ~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~  395 (1051)
T KOG3513|consen  317 RGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQE  395 (1051)
T ss_pred             cccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEeccc
Confidence            9854 667899999999999999999999999999999999999999999999998864433   455778999999999


Q ss_pred             CCCeEEEEEEEcCCcceEEEEEEEEEec-ceeeec
Q psy573          180 EDGGEYVCEAENAVGKISASATLTVQSK-YLKVIH  213 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~~~~~~~l~v~~~-p~~~~~  213 (216)
                      .|+|.|.|.|.|..|..-..+.|.|.+. |.+...
T Consensus       396 ~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~  430 (1051)
T KOG3513|consen  396 SDSGVYQCIAENKYGTIYANAELKVLASAPVFPLN  430 (1051)
T ss_pred             ccCeEEEeeeecccceEeeeeEEEEEccCCCCCCC
Confidence            9999999999999999999999999976 665543

>KOG4222|consensus

Probab=99.94  E-value=2.4e-26  Score=181.61  Aligned_cols=210  Identities=42%  Similarity=0.753  Sum_probs=193.8

Q ss_pred             cccchhhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEE
Q psy573            4 KKTKKEKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA   83 (216)
Q Consensus         4 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~   83 (216)
                      +++..+.+.|..+.|.+...+.+|.+.|....+..|+.+.|.|.-+.+.|.+.+.|.|+|+.+......+..+..++.|.
T Consensus       111 asn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~Ll  190 (1281)
T KOG4222|consen  111 ASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLL  190 (1281)
T ss_pred             ecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEE
Confidence            56677888999999999999999999999999999999999999888999999999999999976667777778889999


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR  163 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~  163 (216)
                      |.++...|+|.|.|.++|..|.-.+...+|.|..+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..++..+
T Consensus       191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r  270 (1281)
T KOG4222|consen  191 ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR  270 (1281)
T ss_pred             EeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccc
Confidence            99999999999999999999987788889999999999999999999999999999999999999999999999998888


Q ss_pred             eeeecC-CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          164 MSVLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       164 ~~~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      +.+..+ .+|.|..+...|.|.|.|.+.|..|...+...++|+++|.+...
T Consensus       271 y~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk  321 (1281)
T KOG4222|consen  271 YSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK  321 (1281)
T ss_pred             eeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccc
Confidence            877655 89999999999999999999999999999999999999987654

>KOG4221|consensus

Probab=99.94  E-value=4.4e-25  Score=175.55  Aligned_cols=202  Identities=31%  Similarity=0.525  Sum_probs=170.0

Q ss_pred             hhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573            9 EKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus         9 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      +.-.+..+.|.+... ++|...+.+.++..|+.+.|.|.+ .+.+.+.+.|.++..++..  ..++....++.|.|..++
T Consensus       126 gsi~Sr~a~v~~a~~-~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~--~~r~i~lpsG~L~I~~~q  201 (1381)
T KOG4221|consen  126 GSILSRTAKVALAGL-ADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPL--DSRVIVLPSGALEISGLQ  201 (1381)
T ss_pred             ceeecceEEEEeccc-CccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccccC--CCcEEEcCCCcEEecccc
Confidence            344566777777665 788889999999999999999999 7788889999999887743  347777888999999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeecc------eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED  162 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~  162 (216)
                      ..|.|.|+|.+++......+....|.|...+      .+...+....+.+|+.+.|.|.+.+.|.|.+.|.+|+..+..+
T Consensus       202 p~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d  281 (1381)
T KOG4221|consen  202 PSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD  281 (1381)
T ss_pred             cCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence            9999999999998776655777788887544      3455667778899999999999999999999999999988766


Q ss_pred             C--eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeecc
Q psy573          163 R--MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHL  214 (216)
Q Consensus       163 ~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~  214 (216)
                      .  ......+.|.|.+++..|+|.|+|.+.|...+..++..|.|..+|.++...
T Consensus       282 s~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p  335 (1381)
T KOG4221|consen  282 SYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAP  335 (1381)
T ss_pred             ceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCC
Confidence            4  334456789999999999999999999988888889999999999887643

>KOG4194|consensus

Probab=99.93  E-value=2.8e-25  Score=166.34  Aligned_cols=192  Identities=29%  Similarity=0.491  Sum_probs=156.9

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccc---------cCceEEEec-----CcEEEEccc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFE---------NSKRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~---------~~~~~~~~~-----~~~l~i~~~   87 (216)
                      ..|++..+|+.+....|.+++|+|.+..+ ..+..+.|.+++......         ...+....+     .+-|++.|+
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            35788888999999999999999998332 334589999987632110         001101111     135999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-CCC---CC
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA-MPE---DR  163 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~~---~~  163 (216)
                      ...|+|.|.|.+.|..|...+..+.+.|...|.+...|.+.+...|+.+.|.|.+.|.|.|.|.|.|+|+. .+.   .+
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR  661 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR  661 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence            99999999999999999988889999999999999999999999999999999999999999999998875 443   23


Q ss_pred             eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeecc
Q psy573          164 MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHL  214 (216)
Q Consensus       164 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~  214 (216)
                      +... ++..+.|.++..+|.|.|+|.+.|.+|..++..+|.|.+.|.+..++
T Consensus       662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL  713 (873)
T KOG4194|consen  662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPL  713 (873)
T ss_pred             eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccc
Confidence            3333 45679999999999999999999999999999999999998877653

>KOG4194|consensus

Probab=99.92  E-value=7.1e-24  Score=158.89  Aligned_cols=196  Identities=28%  Similarity=0.492  Sum_probs=161.3

Q ss_pred             hhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-eccccCceEEEe-cCcEEEEccc
Q psy573           10 KEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-IDFENSKRLRLV-DGTNLAIQDS   87 (216)
Q Consensus        10 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~~-~~~~l~i~~~   87 (216)
                      .--+-.+.|+|... |.|...|.+.++..|+.+.|.|.+ .|.|.|++.|-++|.. .......|.... ++..+.|.|+
T Consensus       599 Stysqk~KltV~~~-PsFtktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnv  676 (873)
T KOG4194|consen  599 STYSQKAKLTVNQA-PSFTKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNV  676 (873)
T ss_pred             cchhheeEEEeecc-CccccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecc
Confidence            33456678888765 899999999999999999999998 8999999999998765 433344444443 4568999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCC-Cee
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPED-RMS  165 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~-~~~  165 (216)
                      +.+|+|.|+|.+.+..|.. +....|.|...|.+..+..+..+..|+++.|.|.+.+.|. |.+.|+|+++++... +..
T Consensus       677 k~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~  755 (873)
T KOG4194|consen  677 KIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT  755 (873)
T ss_pred             cccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc
Confidence            9999999999999999886 6678999999999888888999999999999999998886 999999999887533 222


Q ss_pred             e-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          166 V-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       166 ~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      . ..+..+.+.+...+|.|.|+|...|..|.......+.+...+
T Consensus       756 f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~  799 (873)
T KOG4194|consen  756 FPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK  799 (873)
T ss_pred             CCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence            2 234568888889999999999999999987777766655443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.92  E-value=6.7e-23  Score=141.75  Aligned_cols=155  Identities=17%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             ccceEEecCCcEEEEeeCCCC-----------CCCCeeEEeeCCEEeccc-cCce--------EE-EecCcEEEEcccCC
Q psy573           31 PKSQRVAAGDTALLECGPPRG-----------HPEPTLVWKKNGHPIDFE-NSKR--------LR-LVDGTNLAIQDSRK   89 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~-----------~~~~~~~W~~~~~~~~~~-~~~~--------~~-~~~~~~l~i~~~~~   89 (216)
                      ...+.+.+|+++.|.|.+ .+           ...+.+.|++++...-.. ...+        .. ...+..|.|.+++.
T Consensus        29 ~~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~  107 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN  107 (227)
T ss_pred             cceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence            355788999999999986 33           235689999987542110 0010        00 12246899999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCC-----CCCcEEEEeeCCccCCCC-C
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-----DAVLTVHWKRLGSAMPED-R  163 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~~-~  163 (216)
                      +|+|.|.|.+.+..+.. ...+.|.|..+      +....+.+|+.+.|.|.+.+     .|.|++.|+|++..+... +
T Consensus       108 ~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r  180 (227)
T PHA02826        108 IDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR  180 (227)
T ss_pred             HHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence            99999999999976553 44455666332      23446778999999999853     457899999999987643 3


Q ss_pred             eeee-cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          164 MSVL-PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       164 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .... ..+.|.|.+++.+|+|.|+|.+....
T Consensus       181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            3333 34579999999999999999998753

>KOG4221|consensus

Probab=99.90  E-value=8.8e-23  Score=162.67  Aligned_cols=191  Identities=30%  Similarity=0.553  Sum_probs=159.7

Q ss_pred             hhhceeeEEee-----ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc
Q psy573           13 EEKKKLKIEML-----REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS   87 (216)
Q Consensus        13 ~~~~~l~v~~~-----~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~   87 (216)
                      |..++|+|...     ...|...|....+.+|+.+.|.|.+ .+.|.+++.|.+++..++... .++.+...++|.|.++
T Consensus       221 S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~rivl~g~~slliS~a  298 (1381)
T KOG4221|consen  221 SNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIVLVGGSSLLISNA  298 (1381)
T ss_pred             cceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEEEecccceEEecc
Confidence            66778888632     1246677888999999999999999 889999999999999986554 5666777889999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC-CCCCeee
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSV  166 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~~~~~~~  166 (216)
                      +..|+|.|+|.+.|..... .....|.|..+|.+...+......++.++.+.|.+.+.|.+.+.|+|++..+ +.+...+
T Consensus       299 ~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki  377 (1381)
T KOG4221|consen  299 TDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI  377 (1381)
T ss_pred             ccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe
Confidence            9999999999999855443 4467889999999998888888889999999999999999999999998765 4555555


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ..+..+.|..+-..|.|.|.|.++|..|.......+.+..
T Consensus       378 ~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~  417 (1381)
T KOG4221|consen  378 VGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP  417 (1381)
T ss_pred             cCCCCcEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence            5555599999999999999999999999988777775543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.89  E-value=2.7e-21  Score=141.78  Aligned_cols=180  Identities=24%  Similarity=0.361  Sum_probs=123.5

Q ss_pred             hhceeeEEeec-cceEecccceEEecCCcEEEEeeC----CCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573           14 EKKKLKIEMLR-EEFRVQPKSQRVAAGDTALLECGP----PRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus        14 ~~~~l~v~~~~-~~~~~~~~~~~~~~G~~~~l~C~~----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      ..+.|+|.... +.+...+.+..+.+|..+.|.|..    ..+.+.+.+.|+++.. +   ...++....++.|.|.+++
T Consensus       110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~---~~~r~~~~~~~~L~i~~v~  185 (326)
T PHA02785        110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L---RNKRLKQRTPGIITIEDVR  185 (326)
T ss_pred             EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c---CCcceEecCCCeEEEeecC
Confidence            44666665442 223333444567799999999972    1346788999998642 2   2334444556789999999


Q ss_pred             CCCCceEEEEEEcCCCCccc---ceeEEEEee--cceEEeCCCceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccCC
Q psy573           89 KTDDGRYQCVVKNVAGTRES---TDAVLRVLV--KPYIIRGPKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAMP  160 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~---~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~  160 (216)
                      .+|+|.|+|.+.+..+....   ..+.|.|..  .|.....|....+..|+.+.|.|.+.+.|.   +.+.|++|+..+.
T Consensus       186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~  265 (326)
T PHA02785        186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE  265 (326)
T ss_pred             hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence            99999999999987665321   223444432  222234456667778999999999998875   4799999998764


Q ss_pred             CC------Ceeee-----------cCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          161 ED------RMSVL-----------PSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       161 ~~------~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ..      +....           ....|.|.+++.+|.|.|+|.|.|..+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             CcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            31      11110           134699999999999999999999885533

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.87  E-value=3.2e-20  Score=136.15  Aligned_cols=167  Identities=20%  Similarity=0.329  Sum_probs=118.1

Q ss_pred             ceEEecCCcEEEEeeCC----CCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           33 SQRVAAGDTALLECGPP----RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      ...+.+|+++.|.|.+.    .+.|.+.+.|||++....    .......+..|.|.++..+|+|.|+|.+.|..+.. .
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~  109 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND----RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-M  109 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----eEEEccCCceEEEcccCcccCeEEEEEEECCCcce-E
Confidence            34567899999999862    466778999999875321    12223334468899999999999999999887654 3


Q ss_pred             ceeEEEEeec--ceEEeCCCceeEeCCCcEEEEEEe-----CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCC
Q psy573          109 TDAVLRVLVK--PYIIRGPKDTTVSAGSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED  181 (216)
Q Consensus       109 ~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  181 (216)
                      ..+.|.|...  +.+...+....+.+|..+.+.|..     .+.|.+.+.|++++ .+...+.....++.|.|.+++.+|
T Consensus       110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d  188 (326)
T PHA02785        110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND  188 (326)
T ss_pred             EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence            4556666443  222222233456789999999972     45688999998864 344444444456789999999999


Q ss_pred             CeEEEEEEEcCCcceE----EEEEEEEE
Q psy573          182 GGEYVCEAENAVGKIS----ASATLTVQ  205 (216)
Q Consensus       182 ~g~y~C~~~n~~~~~~----~~~~l~v~  205 (216)
                      .|.|+|.+.|..|...    +.+.|.|.
T Consensus       189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~  216 (326)
T PHA02785        189 AGYYTCVLKYIYGDKTYNVTRIVKLEVR  216 (326)
T ss_pred             CeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence            9999999999887643    34455554

>KOG4222|consensus

Probab=99.85  E-value=1.6e-20  Score=149.24  Aligned_cols=194  Identities=29%  Similarity=0.435  Sum_probs=151.3

Q ss_pred             eEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc-ccCceEEEecCcEEEEcccC-----CCCC
Q psy573           19 KIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSR-----KTDD   92 (216)
Q Consensus        19 ~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-----~~d~   92 (216)
                      .-++.+|.++..|....+..|++++|.|.+ .+.|.+.+.||++|..... ....-..+..+++|.+..+.     ..|.
T Consensus        26 r~qd~~p~iiehp~d~vvs~~~patlnc~a-sG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~  104 (1281)
T KOG4222|consen   26 RAQDQPPRIIEHPHDLVVSKGEPATLNCKA-SGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDH  104 (1281)
T ss_pred             ccccCCCceEecchhhhccCCCCceeecCC-CCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCC
Confidence            335667889999999999999999999998 8889999999999964422 22222223344555444331     2388


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecc-eEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCC---CCCeeee
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVL  167 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~---~~~~~~~  167 (216)
                      |.|+|.+.|..+...+....|.+..-+ .+.+.+....+..|+.+.|.|.- .+.|.+.+.|.|++..+.   .......
T Consensus       105 G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li  184 (1281)
T KOG4222|consen  105 GVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI  184 (1281)
T ss_pred             ceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe
Confidence            999999999988877777777765433 45556667788899999999986 778999999999998875   2334455


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecceeeec
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKYLKVIH  213 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p~~~~~  213 (216)
                      .++.|.|.+++..|.|+|.|.+.|..|. .+....|+|.++|.|...
T Consensus       185 sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r  231 (1281)
T KOG4222|consen  185 SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR  231 (1281)
T ss_pred             cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccc
Confidence            7889999999999999999999999998 666789999999988765

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.80  E-value=2.6e-18  Score=102.12  Aligned_cols=88  Identities=31%  Similarity=0.460  Sum_probs=75.3

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|...
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   80 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK   80 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence            35667777888999999999999999999999999999887765433333556899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy573          198 ASATLTVQ  205 (216)
Q Consensus       198 ~~~~l~v~  205 (216)
                      ..+.|.|+
T Consensus        81 ~~~~l~V~   88 (88)
T cd05851          81 HQARVYVQ   88 (88)
T ss_pred             EEEEEEEC
Confidence            99888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.80  E-value=2.4e-18  Score=104.21  Aligned_cols=93  Identities=30%  Similarity=0.447  Sum_probs=79.5

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+... +....   ..+.|.|.++..+|+|.|+|.+.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            34566678889999999999999999999999999999988643 33332   246799999999999999999999999


Q ss_pred             ceEEEEEEEEEecceee
Q psy573          195 KISASATLTVQSKYLKV  211 (216)
Q Consensus       195 ~~~~~~~l~v~~~p~~~  211 (216)
                      ....++.|.|.+.|..+
T Consensus        81 ~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          81 SRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ceeEEEEEEEecCCCCC
Confidence            99999999999988543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.73  E-value=1.8e-16  Score=94.50  Aligned_cols=85  Identities=31%  Similarity=0.579  Sum_probs=71.7

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      .+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+............|.|.+++.+|+|.|.|.+.|..|....+
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ   82 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence            34555677788899999999999999999999999887665443333456789999999999999999999999999888


Q ss_pred             EEEEE
Q psy573          200 ATLTV  204 (216)
Q Consensus       200 ~~l~v  204 (216)
                      ..|.|
T Consensus        83 ~~l~V   87 (88)
T cd04968          83 GRIYV   87 (88)
T ss_pred             EEEEE
Confidence            88876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=1.8e-16  Score=96.04  Aligned_cols=91  Identities=25%  Similarity=0.410  Sum_probs=75.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.|...+.+..+..|+.+.|.|.+ .+.|.+.+.|++++..+....  ++...   ..+.|.|.++..+|+|.|+|.+.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~--~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N   77 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGE--GIKIENTENSSKLTITEGQQEHCGCYTLEVEN   77 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCC--cEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence            467778888999999999999999 788999999999999885332  33322   346799999999999999999999


Q ss_pred             CCCCcccceeEEEEeecc
Q psy573          102 VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p  119 (216)
                      ..|.. ...+.|.|...|
T Consensus        78 ~~G~~-~~~~~l~V~~~P   94 (98)
T cd05762          78 KLGSR-QAQVNLTVVDKP   94 (98)
T ss_pred             CCCce-eEEEEEEEecCC
Confidence            99886 446788887665

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.72  E-value=1.3e-16  Score=94.34  Aligned_cols=82  Identities=30%  Similarity=0.530  Sum_probs=71.1

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..|.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL   83 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence            45667789999999999999999999999999999886554444466789999999999999999999999999888887


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .|
T Consensus        84 ~V   85 (85)
T cd05728          84 AV   85 (85)
T ss_pred             EC
Confidence            64

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.72  E-value=9.6e-17  Score=92.40  Aligned_cols=73  Identities=38%  Similarity=0.616  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +|+.+.|.|.+.|.|.|.+.|++++..+... +......+.|.|.++..+|.|.|+|.+.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5889999999999999999999999877644 333445678999999999999999999999999998888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.71  E-value=2.1e-16  Score=93.90  Aligned_cols=87  Identities=26%  Similarity=0.517  Sum_probs=70.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...+.+..+.+|+.+.|.|.+ .+.|.|.+.|++++..+..  ..+.. ..++.|.|.+++.+|+|.|.|.+.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPA--TAEIS-MSGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCC--CCEEe-cCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            5788888889999999999999998 8999999999999876632  22222 345689999999999999999999998


Q ss_pred             CCcccceeEEEE
Q psy573          104 GTRESTDAVLRV  115 (216)
Q Consensus       104 ~~~~~~~~~l~v  115 (216)
                      |.. ...+.|.|
T Consensus        77 G~~-~~~~~l~V   87 (88)
T cd05851          77 GKD-KHQARVYV   87 (88)
T ss_pred             Cce-EEEEEEEE
Confidence            875 33455544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.70  E-value=2e-16  Score=90.38  Aligned_cols=72  Identities=26%  Similarity=0.503  Sum_probs=62.4

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.+.|.|.+.|++++..+.. .+.....++.|.|.++..+|.|.|.|.+.|..|+...+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999886643 4455556788999999999999999999999999998888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.69  E-value=3.7e-16  Score=92.80  Aligned_cols=78  Identities=26%  Similarity=0.380  Sum_probs=65.5

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeeec-------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLP-------SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      |+.+.|.|.+.+.|.+.+.|++++..+...  ++....       .+.|.|.++..+|.|.|+|.|.|..|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            688999999999999999999999876432  222221       15699999999999999999999999999999999


Q ss_pred             EEeccee
Q psy573          204 VQSKYLK  210 (216)
Q Consensus       204 v~~~p~~  210 (216)
                      |.++|..
T Consensus        81 V~~~P~~   87 (88)
T cd05735          81 VQEPPDP   87 (88)
T ss_pred             EeCCCCC
Confidence            9988753

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.69  E-value=5.8e-16  Score=93.94  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             CceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCe-ee-ec-------CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          126 KDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRM-SV-LP-------SRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~~-~~-------~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ....+.+|+.+.|.|.+.+ .|.|.+.|+|++..+..... .. ..       ...|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4557889999999999999 89999999999988864322 11 11       367999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy573          196 ISASATLTVQ  205 (216)
Q Consensus       196 ~~~~~~l~v~  205 (216)
                      .+.++.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999988875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.68  E-value=1.5e-15  Score=91.89  Aligned_cols=80  Identities=26%  Similarity=0.449  Sum_probs=67.6

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+...  +.... ....|.|.++..+|.|.|+|.+.|..|....++.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            347789999999999999999999999999877543  22222 335799999999999999999999999999999988


Q ss_pred             EEe
Q psy573          204 VQS  206 (216)
Q Consensus       204 v~~  206 (216)
                      |.+
T Consensus        92 V~~   94 (95)
T cd05730          92 VFA   94 (95)
T ss_pred             EEe
Confidence            865

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=1e-15  Score=88.56  Aligned_cols=72  Identities=29%  Similarity=0.489  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.|.|.|.+.|++++..+...   .......+.|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999876532   122334678999999999999999999999999888888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.68  E-value=8.1e-16  Score=92.37  Aligned_cols=81  Identities=27%  Similarity=0.393  Sum_probs=67.0

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee-c---CCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-P---SRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .|....+.+|+.+.|.|.+.+.|.|.+.|++++..+... +.... .   ...|.|.++..+|+|.|+|.+.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            345668889999999999999999999999999887543 33322 1   236999999999999999999999999888


Q ss_pred             EEEEEE
Q psy573          199 SATLTV  204 (216)
Q Consensus       199 ~~~l~v  204 (216)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.68  E-value=6.3e-16  Score=87.79  Aligned_cols=69  Identities=49%  Similarity=0.885  Sum_probs=61.2

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|++++..++..+........|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            478999999999999999998887776666667788999999999999999999999999888887754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.68  E-value=9.4e-16  Score=88.57  Aligned_cols=72  Identities=21%  Similarity=0.360  Sum_probs=61.5

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.|.|.|++.|++++..+...   .......+.|.|.+++.+|.|.|.|.+.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999887432   222334568999999999999999999999999999998876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.68  E-value=1.3e-15  Score=91.46  Aligned_cols=85  Identities=33%  Similarity=0.566  Sum_probs=71.6

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... +.....   .+.|.|.++..+|+|.|.|.+.|..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            466667778889999999999999999999999999998876543 333322   3579999999999999999999999


Q ss_pred             cceEEEEEE
Q psy573          194 GKISASATL  202 (216)
Q Consensus       194 ~~~~~~~~l  202 (216)
                      |..+.++.|
T Consensus        83 G~~~~~~~l   91 (92)
T cd05747          83 GKQEAQFTL   91 (92)
T ss_pred             CCEeEEEEe
Confidence            998888765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.67  E-value=6.4e-16  Score=88.58  Aligned_cols=69  Identities=29%  Similarity=0.484  Sum_probs=57.6

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeec--CC--eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP--SR--SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~--~~--~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|+|++..+..  .++....  .+  +|.|.++..+|+|.|+|.+.|..|....+..|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47899999999999999999988763  3333322  22  7999999999999999999999999998888764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.67  E-value=1.3e-15  Score=89.97  Aligned_cols=77  Identities=30%  Similarity=0.429  Sum_probs=65.3

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+...  +....   ..+.|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus         5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   84 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV   84 (86)
T ss_pred             EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence            46788999999999999999999999999887542  33332   23579999999999999999999999998888877


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .|
T Consensus        85 ~V   86 (86)
T cd05894          85 KV   86 (86)
T ss_pred             EC
Confidence            64

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.67  E-value=1.1e-15  Score=92.92  Aligned_cols=79  Identities=19%  Similarity=0.197  Sum_probs=66.9

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee----------cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----------PSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|++..+........          ..++|.|..+..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45777899999999999999999999999998864432111          13579999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy573          197 SASATLTVQ  205 (216)
Q Consensus       197 ~~~~~l~v~  205 (216)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.67  E-value=8.7e-16  Score=87.45  Aligned_cols=70  Identities=23%  Similarity=0.355  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      +.|.|.+.|.|.|.+.|+|++..+............|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999999999999999999887665555566889999999999999999999999988877777654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.67  E-value=3.3e-15  Score=96.79  Aligned_cols=114  Identities=17%  Similarity=0.266  Sum_probs=82.5

Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCcc
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSA  158 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~  158 (216)
                      +|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|.+...+.......|+.+.|.|.+.+. |. +.|.|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            68999999999999999998876654 56678899999988776665555578899999999886 43 48999998754


Q ss_pred             CCC-----CCe-----eeecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          159 MPE-----DRM-----SVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       159 ~~~-----~~~-----~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...     ...     ....+      +.|.+..-...+.+.|+|.+.|....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence            211     111     11122      34555555555677999999886543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.67  E-value=7.6e-16  Score=85.93  Aligned_cols=66  Identities=18%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      +.|.|.+.|.|.|.+.|+|++..+...    ...+.|.|.++..+|+|.|+|.+.|..|...+++.|.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            468999999999999999999887532    134689999999999999999999999987777777654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.67  E-value=2e-15  Score=89.73  Aligned_cols=84  Identities=50%  Similarity=1.045  Sum_probs=67.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .|....+.+|+++.|.|.+..+.|.+.+.|++++..+... ..+.....++.|.|.+++.+|+|.|.|.+.|..|...+.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            4667889999999999987567888999999999887543 334445556789999999999999999999988876555


Q ss_pred             eeEEE
Q psy573          110 DAVLR  114 (216)
Q Consensus       110 ~~~l~  114 (216)
                      .+.|.
T Consensus        81 ~~~l~   85 (86)
T cd05724          81 AARLS   85 (86)
T ss_pred             eEEEE
Confidence            55443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.66  E-value=1.7e-15  Score=86.34  Aligned_cols=70  Identities=36%  Similarity=0.617  Sum_probs=59.8

Q ss_pred             cEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          135 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       135 ~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .+.|.|.+.|.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999987654 3444455677999999999999999999999999998888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=2.3e-15  Score=91.36  Aligned_cols=87  Identities=29%  Similarity=0.526  Sum_probs=67.5

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------Ceeeec---CCeEEEecCCCCCCeEEEEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLP---SRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~---~~~l~i~~~~~~d~g~y~C~  188 (216)
                      .|.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+...      +.....   .+.|.|.++..+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            355555555555666899999999999999999999988665322      111111   25799999999999999999


Q ss_pred             EEcCCcceEEEEEEEE
Q psy573          189 AENAVGKISASATLTV  204 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v  204 (216)
                      +.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999888764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.66  E-value=2.9e-15  Score=87.22  Aligned_cols=78  Identities=19%  Similarity=0.474  Sum_probs=64.1

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|++..+............|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            45678899999999999876 5689999999888654333334568999999999999999999999998877776653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.66  E-value=1.7e-15  Score=88.39  Aligned_cols=75  Identities=27%  Similarity=0.469  Sum_probs=62.6

Q ss_pred             CcEEEEEEeCCC--CCcEEEEeeCCccCCCC----Ceee----ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          134 SIIVFECSVGGD--AVLTVHWKRLGSAMPED----RMSV----LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       134 ~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~----~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +++.|.|.+.+.  +.+.|.|++++..+...    ++..    ...+.|.|.+++..|+|.|+|.|.|..++.+.+..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468899999764  57889999999988631    2222    1346899999999999999999999999999999999


Q ss_pred             EEecc
Q psy573          204 VQSKY  208 (216)
Q Consensus       204 v~~~p  208 (216)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.66  E-value=1.7e-15  Score=86.98  Aligned_cols=72  Identities=29%  Similarity=0.586  Sum_probs=62.4

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.+.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.+.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999987753 3445555678999999999999999999999999998888764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.66  E-value=2.5e-15  Score=89.93  Aligned_cols=81  Identities=31%  Similarity=0.519  Sum_probs=66.9

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-e---ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-V---LPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~---~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+...+.. .   .....|.|.++..+|.|.|.|.|.|..|....+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            445566889999999999999999999999999877543321 1   123579999999999999999999999999888


Q ss_pred             EEEEE
Q psy573          200 ATLTV  204 (216)
Q Consensus       200 ~~l~v  204 (216)
                      +.|.|
T Consensus        86 ~~L~v   90 (90)
T cd04972          86 VQVTV   90 (90)
T ss_pred             EEEeC
Confidence            88764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.65  E-value=5.3e-15  Score=89.00  Aligned_cols=82  Identities=27%  Similarity=0.529  Sum_probs=65.1

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCC-cEEEEee-CCccCCC-C-Ceeeec----CCeEEEecCCCCCCeEEEEEEEcCC-
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKR-LGSAMPE-D-RMSVLP----SRSLQLSDVRLEDGGEYVCEAENAV-  193 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~-~~~~~~~-~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~-  193 (216)
                      ..|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. . +.....    .++|.|.+++.+|.|.|+|.|.|.. 
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            4456667889999999999999985 7999998 6665543 2 222221    2579999999999999999999996 


Q ss_pred             cceEEEEEEEE
Q psy573          194 GKISASATLTV  204 (216)
Q Consensus       194 ~~~~~~~~l~v  204 (216)
                      |....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.65  E-value=1.2e-15  Score=87.59  Aligned_cols=69  Identities=29%  Similarity=0.528  Sum_probs=57.4

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCC----eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSR----SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~----~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|+|++..+...  +.......    .|.|.++..+|+|.|+|.+.|..|..+.+..|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            478999999999999999999887542  33332222    6999999999999999999999999998888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.65  E-value=1.9e-15  Score=89.12  Aligned_cols=75  Identities=25%  Similarity=0.404  Sum_probs=62.0

Q ss_pred             CcEEEEEEeCCCCCc--EEEEeeCCccCCCC----Ceee-e---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          134 SIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSV-L---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       134 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +++.|.|.+.+.|.|  .+.|++++..+...    +... .   ..+.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999876  58999999876432    1111 1   246899999999999999999999999999999999


Q ss_pred             EEecc
Q psy573          204 VQSKY  208 (216)
Q Consensus       204 v~~~p  208 (216)
                      |.++|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=3e-15  Score=86.79  Aligned_cols=72  Identities=28%  Similarity=0.415  Sum_probs=61.8

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.+.|.|.+.|++++..+....   ........|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6789999999999999999999998775432   23335678999999999999999999999999998888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.65  E-value=4e-15  Score=89.98  Aligned_cols=87  Identities=31%  Similarity=0.584  Sum_probs=68.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc-----CCCCCceEEEEEEc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQCVVKN  101 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~  101 (216)
                      |...|....+.+|+++.|.|.+ .+.|.+.+.|+|++..+......+.....++.+.|.++     ...|+|.|.|.+.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            4567778888999999999998 78899999999999988544443444555667777776     58999999999999


Q ss_pred             C-CCCcccceeEEE
Q psy573          102 V-AGTRESTDAVLR  114 (216)
Q Consensus       102 ~-~~~~~~~~~~l~  114 (216)
                      . .|...+..+.|.
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            8 777655555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=1.6e-15  Score=87.26  Aligned_cols=73  Identities=29%  Similarity=0.607  Sum_probs=59.2

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +|+.+.|.|.+ .+.|.|.+.|++++..+..  ..+.....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSV--DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT   73 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCC--CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence            68999999998 8999999999999988743  233444556789999999999999999999988875 3344443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=2.4e-15  Score=85.74  Aligned_cols=69  Identities=38%  Similarity=0.663  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|++++..+...+.. ......|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            468999999999999999998876544332 235578999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=4.2e-15  Score=88.93  Aligned_cols=76  Identities=29%  Similarity=0.574  Sum_probs=64.0

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      |+.+.|.|.+.+.|.|.+.|++++...         ...++.....+.|.|.++..+|+|.|.|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            678999999999999999999987642         12234444567899999999999999999999999999999999


Q ss_pred             EEecc
Q psy573          204 VQSKY  208 (216)
Q Consensus       204 v~~~p  208 (216)
                      |.+..
T Consensus        81 V~~~~   85 (90)
T cd05726          81 VTDVI   85 (90)
T ss_pred             Eeecc
Confidence            98754

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.64  E-value=7.7e-15  Score=87.58  Aligned_cols=79  Identities=25%  Similarity=0.462  Sum_probs=66.3

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATL  202 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l  202 (216)
                      +....+.+|+.+.|.|.+.+. .|.+.|++++..+...+.... ..+.|.|.+++.+|.|.|.|.+.|..|. .+..+.|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            345688899999999999999 999999999988766654443 3468999999999999999999999998 5557777


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .|
T Consensus        89 ~V   90 (91)
T cd05740          89 NV   90 (91)
T ss_pred             Ee
Confidence            65

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.64  E-value=6.4e-15  Score=90.14  Aligned_cols=91  Identities=31%  Similarity=0.571  Sum_probs=67.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc---cCceEEEecCcEEEEc-----ccCCCCCceE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQ-----DSRKTDDGRY   95 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~l~i~-----~~~~~d~g~y   95 (216)
                      +|.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.||+++..+...   .........++.+.+.     .+..+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            4778888889999999999999998 78899999999999987541   1122222333333222     2368999999


Q ss_pred             EEEEEcCCCCcccceeEEEE
Q psy573           96 QCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        96 ~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +|.+.|..|...+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            99999999875566666654

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.64  E-value=2.2e-15  Score=90.32  Aligned_cols=86  Identities=38%  Similarity=0.669  Sum_probs=72.4

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +....   ....|.|.++..+|.|.|+|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            45666678889999999999999999999999999998887643 33222   346799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy573          195 KISASATLTV  204 (216)
Q Consensus       195 ~~~~~~~l~v  204 (216)
                      ..+..+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999988875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.64  E-value=5.3e-15  Score=88.86  Aligned_cols=81  Identities=30%  Similarity=0.597  Sum_probs=67.2

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .||.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ..++...   ..+.|.|.++..+|+|.|.|.+
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVS--SQRHQITSTEYKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCC--CCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence            36788888989999999999999998 8889999999999987643  2233332   2358999999999999999999


Q ss_pred             EcCCCCc
Q psy573          100 KNVAGTR  106 (216)
Q Consensus       100 ~~~~~~~  106 (216)
                      .|..|..
T Consensus        79 ~N~~G~~   85 (92)
T cd05747          79 ENSEGKQ   85 (92)
T ss_pred             EcCCCCE
Confidence            9988764

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.64  E-value=3.2e-15  Score=85.37  Aligned_cols=72  Identities=31%  Similarity=0.674  Sum_probs=59.2

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      |+.+.|.|.+ .+.|.+.+.|++++..+.  ...++....+++|.|.+++.+|+|.|.|.+.|..|.. ..+..|.
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS   72 (73)
T ss_pred             CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence            7889999998 788999999999998763  3456666677899999999999999999999988875 3344443

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.64  E-value=4e-15  Score=89.34  Aligned_cols=75  Identities=28%  Similarity=0.541  Sum_probs=60.2

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--CcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |+.+.+.+|+.+.|.|.+ .+.|.|.+.||+++..+............  ..+|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE   84 (92)
T ss_pred             CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence            455789999999999998 78899999999999988543322232221  2479999999999999999999988865

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.63  E-value=3.3e-15  Score=90.62  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             ceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEec-------CcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           33 SQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .+.+.+|+++.|.|.+ .+ .|.|.+.|+|+|..+...... .....       ...|.|..+..+|+|.|+|.+.|..|
T Consensus        12 ~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          12 TIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTE-IVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             eEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcce-eEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            5788999999999999 77 899999999999988532221 21221       36799999999999999999999988


Q ss_pred             CcccceeEEEEe
Q psy573          105 TRESTDAVLRVL  116 (216)
Q Consensus       105 ~~~~~~~~l~v~  116 (216)
                      .. ..++.|.|.
T Consensus        90 ~~-~~t~~L~V~  100 (101)
T cd04975          90 SK-SLTFELYVN  100 (101)
T ss_pred             cE-EEEEEEEEE
Confidence            64 445666553

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.63  E-value=2.6e-15  Score=84.77  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      +.|.|.+.|.|.|.+.|+|++..+.... .......|.|.++..+|+|.|+|.+.|..|......++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            3689999999999999999999886543 23345679999999999999999999999987666665543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.63  E-value=1.2e-14  Score=88.98  Aligned_cols=87  Identities=36%  Similarity=0.601  Sum_probs=65.8

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------CeeeecCCeEEEe-----cCCCCCCeEEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLS-----DVRLEDGGEYV  186 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~l~i~-----~~~~~d~g~y~  186 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...      .......+.+.+.     .+..+|.|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            366677778889999999999999999999999999999877541      1122223332222     23688999999


Q ss_pred             EEEEcCCcc-eEEEEEEEE
Q psy573          187 CEAENAVGK-ISASATLTV  204 (216)
Q Consensus       187 C~~~n~~~~-~~~~~~l~v  204 (216)
                      |.+.|..|. .++.+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 777777665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.63  E-value=6.9e-15  Score=90.89  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee-------cCCeEEEecCC-CCCCeEEEEEEEcCCcceEEEEE
Q psy573          132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-------PSRSLQLSDVR-LEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .|..+.|.|.+.|.|.+.+.|++++..+...  ++...       ..+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            4678999999999999999999999877532  22111       13579999987 58999999999999999999999


Q ss_pred             EEEEecce
Q psy573          202 LTVQSKYL  209 (216)
Q Consensus       202 l~v~~~p~  209 (216)
                      |.+.++|.
T Consensus       102 L~~~~~p~  109 (109)
T cd05773         102 LVSTSRPD  109 (109)
T ss_pred             EEecCCCC
Confidence            99988773

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.63  E-value=5.5e-15  Score=88.10  Aligned_cols=87  Identities=25%  Similarity=0.496  Sum_probs=67.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |+.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .... ..++.|.|.+++.+|+|.|.|.+.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSS--AEIS-MSGAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCc--cEEE-EeCCEEEECCCCcccCEEEEEEEEECC
Confidence            3456667888889999999999998 78899999999987755222  2222 456789999999999999999999988


Q ss_pred             CCcccceeEEEE
Q psy573          104 GTRESTDAVLRV  115 (216)
Q Consensus       104 ~~~~~~~~~l~v  115 (216)
                      |.. .....|.|
T Consensus        77 G~~-~~~~~l~V   87 (88)
T cd04968          77 GKD-THQGRIYV   87 (88)
T ss_pred             CcE-EEEEEEEE
Confidence            875 33455544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.63  E-value=6.8e-15  Score=87.18  Aligned_cols=77  Identities=29%  Similarity=0.523  Sum_probs=63.8

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe----ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~----~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..+.+|+.+.|.|.+.+.|.|.+.|++++..+.....    .. .....|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            3577899999999999999999999999988754321    11 133568999999999999999999999999988887


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.63  E-value=1.1e-14  Score=88.52  Aligned_cols=85  Identities=32%  Similarity=0.619  Sum_probs=65.9

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccCC------CCCeeee---cCCeEEEecCCCCCCeEEEE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAMP------EDRMSVL---PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~------~~~~~~~---~~~~l~i~~~~~~d~g~y~C  187 (216)
                      |.+.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+++  +..+.      ..++...   ....|.|.++..+|+|.|.|
T Consensus         3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C   81 (98)
T cd05870           3 PHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC   81 (98)
T ss_pred             CEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence            44443 4677889999999999999999999999994  33221      1223222   13579999999999999999


Q ss_pred             EEEcCCcceEEEEEEEE
Q psy573          188 EAENAVGKISASATLTV  204 (216)
Q Consensus       188 ~~~n~~~~~~~~~~l~v  204 (216)
                      .+.|..|....++.|.|
T Consensus        82 ~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          82 EAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEeccCCcceeEEEEeC
Confidence            99999999888887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.63  E-value=4.8e-15  Score=87.72  Aligned_cols=75  Identities=28%  Similarity=0.484  Sum_probs=62.0

Q ss_pred             CcEEEEEEeCCCCCc--EEEEeeCCccCCCCC----e--e--eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          134 SIIVFECSVGGDAVL--TVHWKRLGSAMPEDR----M--S--VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       134 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~----~--~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +.+.|.|.+.+.|.|  .+.|++++..+....    .  .  ....+.|.|.+++..|+|.|+|.+.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999998877  679999998765321    1  1  12356899999999999999999999999999999999


Q ss_pred             EEecc
Q psy573          204 VQSKY  208 (216)
Q Consensus       204 v~~~p  208 (216)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.62  E-value=3.3e-15  Score=84.73  Aligned_cols=67  Identities=33%  Similarity=0.624  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      +.|.|.+.|.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.+.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47899999999999999999987754 34445557889999999999999999999999998888776

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.62  E-value=6.1e-15  Score=85.31  Aligned_cols=75  Identities=33%  Similarity=0.614  Sum_probs=58.5

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |+.+.|.|.+ .+.|.|.+.|++++..+............++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus         1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV   75 (76)
T ss_pred             CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence            7899999998 788999999999999875433221223346789999999999999999999988875 33455544

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.62  E-value=6.7e-15  Score=88.24  Aligned_cols=88  Identities=31%  Similarity=0.630  Sum_probs=70.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.|...+.+..+.+|+++.|.|.+ .+.|.+.+.|++++..+............ ...|.|.++..+|+|.|+|.+.+..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence            567778889999999999999998 67788999999999998654444443333 4579999999999999999999986


Q ss_pred             CCcccceeEEE
Q psy573          104 GTRESTDAVLR  114 (216)
Q Consensus       104 ~~~~~~~~~l~  114 (216)
                      +.. ...+.|.
T Consensus        80 g~~-~~~~~l~   89 (90)
T PF07679_consen   80 GEA-TASVNLT   89 (90)
T ss_dssp             EEE-EEEEEEE
T ss_pred             CEE-EEEEEEE
Confidence            654 3344444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.62  E-value=8.9e-15  Score=82.65  Aligned_cols=68  Identities=22%  Similarity=0.484  Sum_probs=55.5

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      |+.+.|.|.+.|.|.|.+.|++++..+............|.|.++  .|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            678999999999999999999999877544333334457888887  47999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=1.3e-14  Score=87.83  Aligned_cols=82  Identities=32%  Similarity=0.710  Sum_probs=64.8

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      ....+..|+.+.|.|.+ .+.|.+.+.|++++..+... ..++... .+..|.|.++..+|+|.|+|.+.|..|.. ...
T Consensus        11 ~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~   87 (95)
T cd05730          11 VNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAE   87 (95)
T ss_pred             cceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEE
Confidence            34578999999999998 78899999999999887433 2333333 34579999999999999999999998875 445


Q ss_pred             eEEEEe
Q psy573          111 AVLRVL  116 (216)
Q Consensus       111 ~~l~v~  116 (216)
                      +.|.|.
T Consensus        88 ~~L~V~   93 (95)
T cd05730          88 IHLKVF   93 (95)
T ss_pred             EEEEEE
Confidence            666654

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.62  E-value=7.4e-15  Score=87.53  Aligned_cols=85  Identities=22%  Similarity=0.501  Sum_probs=65.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEEEcC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +.+.+.+..+.+|+.+.|.|.+ .+.|. .+.||++ +..+..  ..++....++   .|.|.++..+|+|.|+|.+.|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence            4566777889999999999998 77787 8999984 555532  3344444333   7999999999999999999999


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .|.....++.|.+
T Consensus        79 ~G~~~~~~i~l~~   91 (92)
T cd05866          79 KGQTQEATVVLEI   91 (92)
T ss_pred             CCcEEEEEEEEEE
Confidence            8876555555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.62  E-value=1.1e-14  Score=86.92  Aligned_cols=81  Identities=26%  Similarity=0.453  Sum_probs=65.1

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      .+.+..+.+|++++|.|.+ .+. .+.+.|++++..+..   .++... .+..|.|.+++.+|+|.|.|.+.|..|...+
T Consensus         9 ~~~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             ccCccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            3456789999999999998 677 899999999987732   233333 4568999999999999999999999987666


Q ss_pred             ceeEEEE
Q psy573          109 TDAVLRV  115 (216)
Q Consensus       109 ~~~~l~v  115 (216)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            6666655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.62  E-value=6.9e-15  Score=84.94  Aligned_cols=75  Identities=29%  Similarity=0.604  Sum_probs=59.3

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |+.+.|.|.+ .+.|.|.+.|++++..+...........++..|.|.+++..|+|.|.|.+.|..|.. ...+.|.|
T Consensus         1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV   75 (76)
T ss_pred             CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence            7899999999 889999999999999885332222223445689999999999999999999998876 44556654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=1.9e-14  Score=85.44  Aligned_cols=79  Identities=37%  Similarity=0.665  Sum_probs=64.6

Q ss_pred             CCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCC--CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEE
Q psy573          125 PKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASA  200 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~  200 (216)
                      |....+.+|+++.|.|.+ .+.|.|.+.|++++..+..  .+......+.|.|.++..+|+|.|+|.+.|..|.. +..+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   82 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA   82 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence            456788899999999998 7889999999999987654  23444456789999999999999999999999984 4555


Q ss_pred             EEE
Q psy573          201 TLT  203 (216)
Q Consensus       201 ~l~  203 (216)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05724          83 RLS   85 (86)
T ss_pred             EEE
Confidence            554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.61  E-value=2.8e-14  Score=85.89  Aligned_cols=87  Identities=38%  Similarity=0.615  Sum_probs=66.2

Q ss_pred             cceEecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573           25 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~  100 (216)
                      |.|...|..+.+.+|   +.+.|.|.+ .+.|.+.+.|++++..+......++... ++.|.|.+.. ..|+|.|.|.+.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV-AGNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE-CCeEEEccCCccCcCEEEEEEEE
Confidence            456667777766666   579999998 8889999999999998854434444443 5679998865 599999999999


Q ss_pred             cCCCCcccceeEE
Q psy573          101 NVAGTRESTDAVL  113 (216)
Q Consensus       101 ~~~~~~~~~~~~l  113 (216)
                      |..|...+..+.|
T Consensus        80 N~~G~~~s~~a~l   92 (94)
T cd05850          80 NRCGTVVSREANL   92 (94)
T ss_pred             cCcCcEEEEEEEE
Confidence            9988765544443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.61  E-value=7.2e-15  Score=84.49  Aligned_cols=70  Identities=29%  Similarity=0.464  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCC---CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~  205 (216)
                      +.|.|.+.|.|.|.+.|++++..+.   ..+......+.|.|.+++.+|.|.|+|.+.|..|. .+....|.|+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4789999999999999999988764   23444445678999999999999999999999998 5777777763

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.61  E-value=4e-14  Score=85.19  Aligned_cols=84  Identities=24%  Similarity=0.412  Sum_probs=61.9

Q ss_pred             ceEEeCCCceeEeCC---CcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573          119 PYIIRGPKDTTVSAG---SIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDGGEYVCEAENA  192 (216)
Q Consensus       119 p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~  192 (216)
                      |.+...|....+.+|   +.+.|.|.+.+.|.|.+.|++++..+...  .......+.|.|.++. ..|.|.|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence            344455555555444   68999999999999999999999887532  2222345778887765 68999999999999


Q ss_pred             Ccce-EEEEEE
Q psy573          193 VGKI-SASATL  202 (216)
Q Consensus       193 ~~~~-~~~~~l  202 (216)
                      .|.. ++.+.|
T Consensus        82 ~G~~~s~~a~l   92 (94)
T cd05850          82 CGTVVSREANL   92 (94)
T ss_pred             cCcEEEEEEEE
Confidence            9984 445544

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.61  E-value=1.1e-14  Score=83.87  Aligned_cols=69  Identities=28%  Similarity=0.469  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecC----CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPS----RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|+|++..+...  +......    ..|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            478999999999999999999887632  3333222    25999999999999999999999999988887754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.61  E-value=2e-14  Score=86.51  Aligned_cols=86  Identities=35%  Similarity=0.611  Sum_probs=64.9

Q ss_pred             cceEecccceEEe---cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573           25 EEFRVQPKSQRVA---AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~~~~~---~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~  100 (216)
                      |.|...|.++.+.   +|+.+.|.|.+ .+.|.+.+.|++++..+......++.. .++.|.|.++. .+|+|.|.|.+.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~-~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSL-IDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEe-eCCeEEEccCCccCcCEEEEEEEE
Confidence            5566677776554   47899999998 889999999999999885433333333 35689998875 699999999999


Q ss_pred             cCCCCcccceeE
Q psy573          101 NVAGTRESTDAV  112 (216)
Q Consensus       101 ~~~~~~~~~~~~  112 (216)
                      |..|...+..+.
T Consensus        80 N~~G~~~S~~~~   91 (94)
T cd05848          80 NSIGSILSREAL   91 (94)
T ss_pred             cCCCeEEeccEE
Confidence            988876444433

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.61  E-value=8.5e-15  Score=86.54  Aligned_cols=82  Identities=30%  Similarity=0.580  Sum_probs=66.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |...|.+..+..|+.+.|.|.+ .+.|.+.+.|++++..+.  ...++.. .++.|.|.++..+|+|.|+|.+.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~--~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLA--SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECC--CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            4557778899999999999998 888999999999999873  2334433 45689999999999999999999988864


Q ss_pred             ccceeEE
Q psy573          107 ESTDAVL  113 (216)
Q Consensus       107 ~~~~~~l  113 (216)
                       ...+.|
T Consensus        78 -~~~~~l   83 (85)
T cd05728          78 -YASAEL   83 (85)
T ss_pred             -EEEEEE
Confidence             334444

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.60  E-value=1.1e-14  Score=85.65  Aligned_cols=76  Identities=22%  Similarity=0.500  Sum_probs=62.4

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee--cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+........  ....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            456799999999999999999999999987754332222  2357999999999999999999999999888877653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.60  E-value=3.4e-14  Score=85.13  Aligned_cols=84  Identities=23%  Similarity=0.414  Sum_probs=61.3

Q ss_pred             ceEEeCCCceeEeC---CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCC-CCCCeEEEEEEEcCC
Q psy573          119 PYIIRGPKDTTVSA---GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVR-LEDGGEYVCEAENAV  193 (216)
Q Consensus       119 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~  193 (216)
                      |.+...|....+.+   |..+.|.|.+.|.|.|++.|++++..+.. .......++.|.|.++. .+|+|.|.|.|.|..
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~   81 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIY   81 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCc
Confidence            33444444444433   34799999999999999999999987742 22233456789998885 689999999999999


Q ss_pred             cce-EEEEEE
Q psy573          194 GKI-SASATL  202 (216)
Q Consensus       194 ~~~-~~~~~l  202 (216)
                      |.. ++.+.|
T Consensus        82 G~~~s~~a~l   91 (93)
T cd05849          82 GKVRSREATL   91 (93)
T ss_pred             ceEEEccEEE
Confidence            985 434444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.60  E-value=1.8e-14  Score=82.99  Aligned_cols=70  Identities=26%  Similarity=0.459  Sum_probs=58.4

Q ss_pred             cEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          135 IIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       135 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .+.|.|.+.|.|.|.+.|++++..+... +....   ....|.|.++..+|+|.|+|.+.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3689999999999999999999887433 33332   2357999999999999999999999999998888764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.60  E-value=1.7e-14  Score=87.51  Aligned_cols=85  Identities=34%  Similarity=0.537  Sum_probs=66.8

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------Ceeee---cCCeEEEecCCCCCCeEEEEEE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVL---PSRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~---~~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      |.+. .+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...      +....   ..+.|.|.++..+|.|.|.|.+
T Consensus         3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   81 (96)
T cd05732           3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEA   81 (96)
T ss_pred             ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEE
Confidence            4443 345678889999999999999999999999988655321      12221   1247999999999999999999


Q ss_pred             EcCCcceEEEEEEEE
Q psy573          190 ENAVGKISASATLTV  204 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v  204 (216)
                      .|..|....++.|.|
T Consensus        82 ~N~~G~~~~s~~l~v   96 (96)
T cd05732          82 SNRIGGDQQSMYLEV   96 (96)
T ss_pred             EeCCCCcEEEEEEeC
Confidence            999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.60  E-value=2.9e-14  Score=85.45  Aligned_cols=81  Identities=26%  Similarity=0.388  Sum_probs=66.3

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eee--ecC--CeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSV--LPS--RSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~--~~~--~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .|....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... +..  ...  ..|.|.++..+|+|.|+|.+.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            3456788999999999999999999999999988765432 222  111  37999999999999999999999999998


Q ss_pred             EEEEEE
Q psy573          199 SATLTV  204 (216)
Q Consensus       199 ~~~l~v  204 (216)
                      ++.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.60  E-value=1e-14  Score=83.85  Aligned_cols=73  Identities=37%  Similarity=0.705  Sum_probs=60.0

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      ++|.|.+ .+.|.|.+.||+++..+......++....++.|.|.+++.+|+|.|.|.+.|..|...+....|.|
T Consensus         1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799998 889999999999998875434556666667789999999999999999999998876566666654

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.60  E-value=4.2e-14  Score=85.09  Aligned_cols=83  Identities=27%  Similarity=0.539  Sum_probs=61.4

Q ss_pred             ceEEeCCCceeEe---CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC--eeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573          119 PYIIRGPKDTTVS---AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVLPSRSLQLSDVR-LEDGGEYVCEAENA  192 (216)
Q Consensus       119 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~  192 (216)
                      |.+...+.+..+.   +|+.+.|.|.+.|.|.|.+.|++++..+....  .....++.|.|.++. .+|.|.|.|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            3444455554433   46899999999999999999999998875321  222345778898874 68999999999999


Q ss_pred             CcceE-EEEE
Q psy573          193 VGKIS-ASAT  201 (216)
Q Consensus       193 ~~~~~-~~~~  201 (216)
                      .|... +.+.
T Consensus        82 ~G~~~S~~~~   91 (94)
T cd05848          82 IGSILSREAL   91 (94)
T ss_pred             CCeEEeccEE
Confidence            99853 3443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.60  E-value=9.5e-15  Score=83.50  Aligned_cols=69  Identities=30%  Similarity=0.658  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|++++..+...+... .....|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999999999999999988765443332 23468999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.59  E-value=4e-14  Score=84.38  Aligned_cols=81  Identities=25%  Similarity=0.494  Sum_probs=63.4

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecCC---eEEEecCCCCCCeEEEEEEEcCCcc-e
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSR---SLQLSDVRLEDGGEYVCEAENAVGK-I  196 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~~~~-~  196 (216)
                      ..+.+..+..|+.+.|.|.+.|.|. .+.|+++ +..+. ..+......+   .|.|.++..+|+|.|+|.|.|..|. .
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            4456678899999999999999997 8999984 54443 3344444333   7999999999999999999999998 4


Q ss_pred             EEEEEEEE
Q psy573          197 SASATLTV  204 (216)
Q Consensus       197 ~~~~~l~v  204 (216)
                      .+++.|.+
T Consensus        84 ~~~i~l~~   91 (92)
T cd05866          84 EATVVLEI   91 (92)
T ss_pred             EEEEEEEE
Confidence            66666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.59  E-value=2.5e-14  Score=86.08  Aligned_cols=87  Identities=21%  Similarity=0.503  Sum_probs=63.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCC-CeeEEee-CCEEeccccCceEEEec----CcEEEEcccCCCCCceEEEEEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKK-NGHPIDFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +.+.|....+..|+.+.|.|.+ .+.|. +.+.|++ ++..+... ..++....    .+.|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEE
Confidence            4567777889999999999998 77774 6999998 67655321 22333321    2579999999999999999999


Q ss_pred             cCCCCcccceeEEEE
Q psy573          101 NVAGTRESTDAVLRV  115 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v  115 (216)
                      |..+.....++.|.|
T Consensus        81 N~~~g~~~~s~~l~v   95 (96)
T cd05865          81 NEDEGESEATVNVKI   95 (96)
T ss_pred             cCCCCcEEEEEEEEE
Confidence            986333344555544

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.59  E-value=5.3e-14  Score=84.32  Aligned_cols=86  Identities=33%  Similarity=0.587  Sum_probs=64.0

Q ss_pred             cceEecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573           25 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~  100 (216)
                      |.|...|....+.++   ..+.|.|.+ .+.|.+.+.|++++..+... ..++. ..++.|.|.++. .+|+|.|.|.+.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYS-MVGGNLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEE-EECCEEEECcCCcCCCCEEEEEEEE
Confidence            456666666555544   479999999 89999999999999887432 23443 346789999885 689999999999


Q ss_pred             cCCCCcccceeEE
Q psy573          101 NVAGTRESTDAVL  113 (216)
Q Consensus       101 ~~~~~~~~~~~~l  113 (216)
                      |..|...+..+.|
T Consensus        79 N~~G~~~s~~a~l   91 (93)
T cd05849          79 NIYGKVRSREATL   91 (93)
T ss_pred             eCcceEEEccEEE
Confidence            9988765544443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.59  E-value=2.2e-14  Score=83.05  Aligned_cols=70  Identities=30%  Similarity=0.575  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCC--eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKIS--ASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~--~~~~l~v~  205 (216)
                      +.|.|.+.|.|.|.+.|+|++..+....  .... ..+.|.|.++..+|.|.|.|.+.|..|...  ..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4799999999999999999998875432  2222 346899999999999999999999999864  45555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.59  E-value=1.7e-14  Score=81.57  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|++.|+|++..+... .........|.|.++..+|+|.|+|.+.|......+...+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            368999999999999999999887654 333345568999999999999999999999877666666554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.58  E-value=5.4e-14  Score=85.03  Aligned_cols=82  Identities=34%  Similarity=0.564  Sum_probs=64.0

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCCeEEEecC-----CCCCCeEEEEEEEcC-C
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDV-----RLEDGGEYVCEAENA-V  193 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~  193 (216)
                      ..|....+.+|+++.|.|.+.+.|.|.+.|+|++..+....   .....++.+.|.++     ...|.|.|.|.+.|. .
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~   83 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSL   83 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence            34566777889999999999999999999999998875432   33334566777766     578999999999999 8


Q ss_pred             cce-EEEEEEEE
Q psy573          194 GKI-SASATLTV  204 (216)
Q Consensus       194 ~~~-~~~~~l~v  204 (216)
                      |.. ++.+.|.|
T Consensus        84 G~~~s~~~~l~v   95 (95)
T cd05722          84 GSIVSRTARLTV   95 (95)
T ss_pred             CcEEEeeeEEeC
Confidence            884 65666543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.58  E-value=1.5e-14  Score=83.27  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             EEEEEeCCCCCcEEEEeeCCccCCCCCeee-----e----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          137 VFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----L----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       137 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-----~----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .|.|.+.|.|.|++.|+|++..+.......     .    ..+.|.|.++..+|+|.|+|.|.|..|..++++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            478999999999999999999886543211     1    235799999999999999999999999988887654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.58  E-value=5e-14  Score=83.24  Aligned_cols=79  Identities=24%  Similarity=0.477  Sum_probs=62.4

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .+.+.+|+.+.|.|.+ .+.|.|.+.|++++..+... ..++...   ..+.|.|.++..+|+|.|.|.+.|..|.. ..
T Consensus         4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~   80 (86)
T cd05894           4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HA   80 (86)
T ss_pred             EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EE
Confidence            4678899999999998 89999999999999988532 2233332   23579999999999999999999998875 33


Q ss_pred             eeEEE
Q psy573          110 DAVLR  114 (216)
Q Consensus       110 ~~~l~  114 (216)
                      .+.|.
T Consensus        81 ~~~l~   85 (86)
T cd05894          81 SLFVK   85 (86)
T ss_pred             EEEEE
Confidence            44443

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=2.3e-14  Score=82.26  Aligned_cols=72  Identities=31%  Similarity=0.688  Sum_probs=58.5

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      |+.+.|.|.+ .+.|.+.+.|++++..+.  ...++....++.|.|.+++.+|+|.|.|.+.|..|.. ..++.|.
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKP-KAAPKPTISWSKGTELLT--NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS   72 (73)
T ss_pred             CCeEEEEEee-eEcCCCEEEEEECCEEcc--cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence            7889999998 788999999999998873  3345556666789999999999999999999988875 3344443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.58  E-value=3.2e-14  Score=85.36  Aligned_cols=78  Identities=26%  Similarity=0.374  Sum_probs=63.0

Q ss_pred             ceeEeCCCcEEEEEEeCC-----CCCcEEEEeeCCccCCC---CCee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          127 DTTVSAGSIIVFECSVGG-----DAVLTVHWKRLGSAMPE---DRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~---~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|++..+..   .... ...+..|.|.++..+|+|.|.|.+.|..|...
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            456778999999999988     68889999999876432   1111 12457899999999999999999999999998


Q ss_pred             EEEEEEE
Q psy573          198 ASATLTV  204 (216)
Q Consensus       198 ~~~~l~v  204 (216)
                      ..++|.|
T Consensus        88 ~~~~L~v   94 (94)
T cd05756          88 VSISLTV   94 (94)
T ss_pred             EEEEEEC
Confidence            8888764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.57  E-value=2.9e-14  Score=83.03  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCCcEEEEeeCCccCCCCCee-e--e--------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          137 VFECSVGGDAVLTVHWKRLGSAMPEDRMS-V--L--------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       137 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~--~--------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .|.|.+.|.|.|.++|+|++..+...... .  .        ..+.|.|.++...|+|.|+|.|.|..|..++++.+..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            47899999999999999999988654321 1  1        1246999999999999999999999999988877653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.57  E-value=3.7e-14  Score=82.84  Aligned_cols=79  Identities=27%  Similarity=0.487  Sum_probs=60.9

Q ss_pred             CcEEEEeeCCC-CCCCCeeEEeeCCEEeccc-cCceEEEe----cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           40 DTALLECGPPR-GHPEPTLVWKKNGHPIDFE-NSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        40 ~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      +++.|.|.+.. ..+.+.+.|+++|..+... ...++...    .++.|.|.+++..|+|.|+|.+.+..+.. .....|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence            46899999833 3457799999999999642 23344442    35689999999999999999999988775 566788


Q ss_pred             EEeecc
Q psy573          114 RVLVKP  119 (216)
Q Consensus       114 ~v~~~p  119 (216)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            888765

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.57  E-value=4.4e-14  Score=84.66  Aligned_cols=76  Identities=30%  Similarity=0.586  Sum_probs=59.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      .|..+.+.+|+.+.|.|.+ .+.|.+.+.||+++..+............+  .+|.|.+++.+|+|.|.|.+.|..|..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence            4556789999999999998 678899999999998774332222222222  379999999999999999999988765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.57  E-value=4.5e-14  Score=81.80  Aligned_cols=75  Identities=36%  Similarity=0.663  Sum_probs=59.1

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |+.+.|.|.+ .+.|.|.+.|++++..+............++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus         1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            7899999998 889999999999999875433322334456789999999999999999999988765 34455544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.56  E-value=5.9e-14  Score=80.81  Aligned_cols=72  Identities=26%  Similarity=0.531  Sum_probs=59.1

Q ss_pred             CCcEEEEEEeCCCCCcEEEEee-CCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKR-LGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |+.+.|.|.+.+.|.|.+.|++ ++..+... +......+.|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 45544432 333445678999999999999999999999999888877754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.56  E-value=1e-13  Score=84.27  Aligned_cols=84  Identities=27%  Similarity=0.569  Sum_probs=62.9

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEecc---ccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPIDF---ENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~---~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ..+.+..+.+|+.++|.|.+ .+.|.|.+.||+.  +..+..   ....++....   ...|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~   84 (98)
T cd05870           6 IQLKNETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA   84 (98)
T ss_pred             EeeccEEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence            45678899999999999998 7889999999994  333321   1123444332   3579999999999999999999


Q ss_pred             cCCCCcccceeEEE
Q psy573          101 NVAGTRESTDAVLR  114 (216)
Q Consensus       101 ~~~~~~~~~~~~l~  114 (216)
                      |..|.. ..++.|.
T Consensus        85 N~~G~~-~~~~~l~   97 (98)
T cd05870          85 SRIGGH-QKSMYLD   97 (98)
T ss_pred             ccCCcc-eeEEEEe
Confidence            988865 3345554

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.56  E-value=4.9e-14  Score=81.92  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=59.4

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE-EEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS-ASA  200 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~-~~~  200 (216)
                      ..|.+..+..|+.+.|.|.+.|.|.| +|.|++++..+...  .....+.|.|..+  .|.|.|.|.|.|..|... +.+
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence            34667788999999999999999999 79999999877541  1123467888877  478999999999999743 344


Q ss_pred             EE
Q psy573          201 TL  202 (216)
Q Consensus       201 ~l  202 (216)
                      .|
T Consensus        79 ~~   80 (81)
T cd05749          79 TV   80 (81)
T ss_pred             Ee
Confidence            43

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.56  E-value=3.2e-14  Score=81.56  Aligned_cols=70  Identities=30%  Similarity=0.563  Sum_probs=54.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--Cc--EEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +.|.|.+ .+.|.|.+.|+|++..+... ..++.+..  ++  +|.|.++..+|+|.|+|.+.|..|.. .....|.
T Consensus         1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05892           1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD   74 (75)
T ss_pred             CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence            5799998 89999999999999988532 23444432  22  79999999999999999999998875 3344444

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.56  E-value=3.7e-14  Score=83.17  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      ++.+....+.+|++++|.|.+..+.+..++.||+++..+..       ...+..|.|.+++.+|+|.|+|.+.+..+...
T Consensus         3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            45555667999999999999744456678999999986631       12346799999999999999999999887655


Q ss_pred             cceeEEE
Q psy573          108 STDAVLR  114 (216)
Q Consensus       108 ~~~~~l~  114 (216)
                      +..+.+.
T Consensus        76 s~~~~i~   82 (83)
T cd05753          76 SEPVSIT   82 (83)
T ss_pred             CCCEEEE
Confidence            5555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.56  E-value=9.6e-14  Score=84.20  Aligned_cols=88  Identities=20%  Similarity=0.420  Sum_probs=64.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc---CceEEEec---CcEEEEcccCCCCCceEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVD---GTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~g~y~C~   98 (216)
                      |.|...+....+..|+.++|.|.+ .+.|.|.+.|++++..+....   ..++....   .+.|.|.+++.+|+|.|.|.
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            555555555556668999999998 788999999999887663211   12232222   24799999999999999999


Q ss_pred             EEcCCCCcccceeEEE
Q psy573           99 VKNVAGTRESTDAVLR  114 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~  114 (216)
                      +.|..|.. ...+.|.
T Consensus        82 A~N~~G~~-~~~~~l~   96 (97)
T cd05869          82 ASNTIGQD-SQSMYLE   96 (97)
T ss_pred             EecCCCCe-eEEEEEE
Confidence            99998875 4445554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.55  E-value=8e-14  Score=80.54  Aligned_cols=67  Identities=21%  Similarity=0.497  Sum_probs=54.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |.+.+.|+...+.+|+.++|.|.+ .+.|. ..+.||+++..+.         ..+..|.|.++ .+|+|.|+|.+.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLE---------TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEee---------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            345677888899999999999998 55554 4799999998772         13467999999 99999999999764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.55  E-value=5.9e-14  Score=83.92  Aligned_cols=83  Identities=23%  Similarity=0.396  Sum_probs=62.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE-EecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      .|.+..+.+|+.+.|.|.+ .+.|.|.+.|++++..+......... ......|.|.++..+|.|.|.|.+.|..|.. .
T Consensus         6 ~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~   83 (90)
T cd04972           6 GPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-N   83 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence            3455668999999999999 78999999999999877432221111 1223579999999999999999999988875 3


Q ss_pred             ceeEEE
Q psy573          109 TDAVLR  114 (216)
Q Consensus       109 ~~~~l~  114 (216)
                      ..+.|.
T Consensus        84 ~~~~L~   89 (90)
T cd04972          84 VSVQVT   89 (90)
T ss_pred             EEEEEe
Confidence            344443

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=9e-14  Score=80.22  Aligned_cols=69  Identities=39%  Similarity=0.706  Sum_probs=56.0

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccC-CC---CCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAM-PE---DRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~-~~---~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|++++... +.   .+.... ....|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            468999999999999999988632 21   122222 3467999999999999999999999999988888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.55  E-value=4.7e-14  Score=84.28  Aligned_cols=73  Identities=38%  Similarity=0.549  Sum_probs=56.6

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCC----ccCCCC--C-eee----------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLG----SAMPED--R-MSV----------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~----~~~~~~--~-~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |+.+.|.|.+.+.|.|.|.|+|++    ..+...  . ...          .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999964    221111  0 000          12246999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy573          196 ISASATLTVQ  205 (216)
Q Consensus       196 ~~~~~~l~v~  205 (216)
                      ...++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9888888773

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.55  E-value=1.8e-13  Score=83.15  Aligned_cols=84  Identities=20%  Similarity=0.262  Sum_probs=65.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCC---CCeeeecC-------CeEEEecCCCC-CCeEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVLPS-------RSLQLSDVRLE-DGGEY  185 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~---~~~~~~~~-------~~l~i~~~~~~-d~g~y  185 (216)
                      +|.+ ..+....+..|+.+.|.|.+.+.|.| .+.|++++..+..   .++.....       +.|.|.++..+ |.|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            3444 33456678899999999999999999 6999999987653   23333221       37999999984 48999


Q ss_pred             EEEEEcCCcceEEEEEE
Q psy573          186 VCEAENAVGKISASATL  202 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l  202 (216)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.55  E-value=9.8e-14  Score=80.76  Aligned_cols=71  Identities=28%  Similarity=0.553  Sum_probs=56.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |.+..+.+|+.+.|.|.+ .+. .+.+.|+++|..+..  ..++... +..|.|.+++.+|+|.|.|.+.+..+..
T Consensus         1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~--~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGE--NNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCC--CceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            456788999999999998 454 568999999988743  2344443 4689999999999999999999876653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.54  E-value=1.2e-13  Score=82.04  Aligned_cols=78  Identities=23%  Similarity=0.374  Sum_probs=61.2

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe----cC---cEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DG---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      |+.+.|.|.+ .+.|.+.+.|++++..+.... .++...    ..   +.|.|.++..+|+|.|+|.+.|..|.. ...+
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~   77 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGII   77 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEE
Confidence            7899999998 788999999999998774322 233222    11   469999999999999999999999876 4567


Q ss_pred             EEEEeecc
Q psy573          112 VLRVLVKP  119 (216)
Q Consensus       112 ~l~v~~~p  119 (216)
                      .|.|..+|
T Consensus        78 ~L~V~~~P   85 (88)
T cd05735          78 QLTVQEPP   85 (88)
T ss_pred             EEEEeCCC
Confidence            78877655

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.54  E-value=5.5e-14  Score=81.69  Aligned_cols=71  Identities=27%  Similarity=0.498  Sum_probs=57.3

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      |+.+.|.|.+.+.|.|.+.|++++..+... +....   ....|.|.++..+|.|.|.|.+.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            678999999999999999999998777543 33222   225799999999999999999999999876655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.54  E-value=1e-13  Score=81.76  Aligned_cols=78  Identities=26%  Similarity=0.508  Sum_probs=59.2

Q ss_pred             CcEEEEeeCCCCCCCC--eeEEeeCCEEecccc-CceEE---E-ecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           40 DTALLECGPPRGHPEP--TLVWKKNGHPIDFEN-SKRLR---L-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~-~~~~~---~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      ++++|.|.+ .+.|.+  .+.|++++..+.... ..++.   . ...++|.|.+++..|+|.|+|.+.+..+.. ...+.
T Consensus         1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~   78 (85)
T cd05854           1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASAT   78 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEE
Confidence            478999998 777776  689999998875322 22221   1 134689999999999999999999988875 55778


Q ss_pred             EEEeecc
Q psy573          113 LRVLVKP  119 (216)
Q Consensus       113 l~v~~~p  119 (216)
                      |.|..+|
T Consensus        79 L~V~~~P   85 (85)
T cd05854          79 LVVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8887655

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.54  E-value=9.8e-14  Score=84.32  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-------ecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-------VDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      ...+..|+.+.|.|.+ .+.|.|.+.|+|++.++..........       ...+.|.|.++..+|+|.|+|.+.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            5678899999999999 889999999999999985322111110       11357999999999999999999998876


Q ss_pred             cccceeEEEEe
Q psy573          106 RESTDAVLRVL  116 (216)
Q Consensus       106 ~~~~~~~l~v~  116 (216)
                      . +.++.|.|.
T Consensus        91 ~-~~t~~l~V~  100 (101)
T cd05859          91 K-SYTFALQIQ  100 (101)
T ss_pred             E-EEEEEEEEE
Confidence            4 445666553

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.54  E-value=2.4e-13  Score=81.46  Aligned_cols=81  Identities=27%  Similarity=0.485  Sum_probs=60.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEee-CCccCCC-CCeeeec----CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLP----SRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+.|....+..|+.+.|.|.+.|.|. .+.|++ ++..+.. .+.....    .+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            34456678999999999999998874 999997 4544432 3333222    247999999999999999999998654


Q ss_pred             -eEEEEEEE
Q psy573          196 -ISASATLT  203 (216)
Q Consensus       196 -~~~~~~l~  203 (216)
                       ...++.|.
T Consensus        83 ~~~~sv~l~   91 (92)
T cd04977          83 ESEATVNLK   91 (92)
T ss_pred             cceeEEEEE
Confidence             66676665

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=1.3e-13  Score=82.40  Aligned_cols=77  Identities=32%  Similarity=0.588  Sum_probs=61.0

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      |+.+.|.|.+ .+.|.+.+.|++++....      .....++....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   78 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAY   78 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEE
Confidence            7899999998 788999999999876431      122445666666789999999999999999999988875 44567


Q ss_pred             EEEee
Q psy573          113 LRVLV  117 (216)
Q Consensus       113 l~v~~  117 (216)
                      |.|..
T Consensus        79 l~V~~   83 (90)
T cd05726          79 LEVTD   83 (90)
T ss_pred             EEEee
Confidence            77764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=1.5e-13  Score=80.66  Aligned_cols=72  Identities=25%  Similarity=0.483  Sum_probs=57.1

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCcc---C--CCC----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSA---M--PED----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~---~--~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      |+.+.|.|.+.+.|.|.+.|+++...   +  ...    +........|.|.++..+|+|.|.|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            67899999999999999999997421   1  111    11222346799999999999999999999999998888876


Q ss_pred             E
Q psy573          204 V  204 (216)
Q Consensus       204 v  204 (216)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.53  E-value=5.4e-14  Score=80.70  Aligned_cols=70  Identities=34%  Similarity=0.569  Sum_probs=54.4

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc----EEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +.|.|.+ .+.|.|.+.|++++..+... ..++....+.    .|.|.++..+|+|.|+|.+.|..|.. +....|.
T Consensus         1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05893           1 VRLECRV-SGVPHPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD   74 (75)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence            5799998 89999999999999987432 3344443322    69999999999999999999998876 3344544

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.53  E-value=1.8e-13  Score=82.06  Aligned_cols=85  Identities=21%  Similarity=0.488  Sum_probs=60.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEEcC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +.+.|....+..|+.+.|.|.+ .+.| +.+.|++ ++..+... ........   .+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~-~G~p-~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   79 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQV-IGEP-KDISWFSPNGEKLVTQ-QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA   79 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEe-EeeC-CeEEEECCCCCEeccC-CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence            4456777889999999999998 6666 4999998 55555321 11122222   247999999999999999999998


Q ss_pred             CCCcccceeEEE
Q psy573          103 AGTRESTDAVLR  114 (216)
Q Consensus       103 ~~~~~~~~~~l~  114 (216)
                      .+.....++.|.
T Consensus        80 ~g~~~~~sv~l~   91 (92)
T cd04977          80 KGTESEATVNLK   91 (92)
T ss_pred             CCCcceeEEEEE
Confidence            665445555544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.53  E-value=7.4e-14  Score=79.58  Aligned_cols=70  Identities=34%  Similarity=0.619  Sum_probs=55.3

Q ss_pred             cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      .+.|.|.+ .+.|.|.+.|++++..+..  ..++....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   70 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI   70 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence            47899999 8899999999999987743  334455556679999999999999999999988875 3344443

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.53  E-value=1.4e-13  Score=79.72  Aligned_cols=72  Identities=26%  Similarity=0.548  Sum_probs=54.7

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCCcc-cceeEEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRV  115 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v  115 (216)
                      ++|.|.+ .+.|.|.+.|||++..+.... ..+.. ..++.|.|.++..+|+|.|.|.+.|..|... +..+.|.|
T Consensus         1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQ-GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEe-eecCCCcEEEEECCEECCCCC-ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            5799998 788999999999999874332 22333 3346899999999999999999999888643 33455554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.52  E-value=1.1e-13  Score=81.83  Aligned_cols=78  Identities=28%  Similarity=0.510  Sum_probs=58.9

Q ss_pred             CcEEEEeeCCCCCCCC--eeEEeeCCEEeccccC-ce----EEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           40 DTALLECGPPRGHPEP--TLVWKKNGHPIDFENS-KR----LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~-~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      +.+.|.|.+ .+.|.+  .+.|++++..+..... ..    .....++.|.|.+++..|+|.|+|.+.|..+.. .....
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~   78 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASAD   78 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEE
Confidence            478999998 677766  6799999998753321 11    112245689999999999999999999988765 55678


Q ss_pred             EEEeecc
Q psy573          113 LRVLVKP  119 (216)
Q Consensus       113 l~v~~~p  119 (216)
                      |.|..+|
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8887765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.52  E-value=2e-13  Score=82.74  Aligned_cols=87  Identities=22%  Similarity=0.422  Sum_probs=64.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc---cCceEEEec---CcEEEEcccCCCCCceEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVD---GTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~   98 (216)
                      |.+. .+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...   ...++....   .+.|.|.+++.+|+|.|.|.
T Consensus         3 P~i~-~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           3 PKIT-YLENQTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             ccce-ecCceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            4443 4567889999999999998 78899999999988655321   122333322   24799999999999999999


Q ss_pred             EEcCCCCcccceeEEE
Q psy573           99 VKNVAGTRESTDAVLR  114 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~  114 (216)
                      +.|..|.. ..++.|.
T Consensus        81 a~N~~G~~-~~s~~l~   95 (96)
T cd05732          81 ASNRIGGD-QQSMYLE   95 (96)
T ss_pred             EEeCCCCc-EEEEEEe
Confidence            99998875 4444443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.52  E-value=2.3e-13  Score=80.58  Aligned_cols=79  Identities=29%  Similarity=0.525  Sum_probs=60.2

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc-eEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      ..+.+|+.+.|.|.+ .+.|.+.+.||+++..+...... .+.. .....|.|.++..+|+|.|+|.+.|..|.. ...+
T Consensus         4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~   81 (85)
T cd05857           4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTY   81 (85)
T ss_pred             EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEE
Confidence            457889999999998 78899999999999987433221 1122 234579999999999999999999988865 4445


Q ss_pred             EEE
Q psy573          112 VLR  114 (216)
Q Consensus       112 ~l~  114 (216)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05857          82 HLD   84 (85)
T ss_pred             EEE
Confidence            544

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.52  E-value=1.5e-13  Score=82.42  Aligned_cols=80  Identities=23%  Similarity=0.341  Sum_probs=59.6

Q ss_pred             cceEEecCCcEEEEeeCCCC-----CCCCeeEEeeCCEEeccc--cCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           32 KSQRVAAGDTALLECGPPRG-----HPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ....+.+|+.+.|.|.+ .+     .|.+.+.|||++..+...  ...++.. .++.|.|.++..+|+|.|.|.+.|..+
T Consensus         7 ~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           7 KKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             eEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            35677899999999998 55     688899999998764322  2233322 457899999999999999999999887


Q ss_pred             CcccceeEEE
Q psy573          105 TRESTDAVLR  114 (216)
Q Consensus       105 ~~~~~~~~l~  114 (216)
                      .. ...+.|.
T Consensus        85 ~~-~~~~~L~   93 (94)
T cd05756          85 CM-KVSISLT   93 (94)
T ss_pred             cE-EEEEEEE
Confidence            65 3344443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.51  E-value=4.1e-13  Score=81.61  Aligned_cols=79  Identities=23%  Similarity=0.431  Sum_probs=61.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecC-------cEEEEcccCCCC-CceEEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQC   97 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d-~g~y~C   97 (216)
                      ++..+....+.+|+.+.|.|.+ .+.|.| .+.|++++..+......++.+...       +.|.|.++..+| .|.|.|
T Consensus         4 ~i~~~~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C   82 (98)
T cd05758           4 IITSEATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC   82 (98)
T ss_pred             eEcCCCcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence            3345667788999999999999 788888 699999998875443344444322       379999999944 899999


Q ss_pred             EEEcCCCCc
Q psy573           98 VVKNVAGTR  106 (216)
Q Consensus        98 ~~~~~~~~~  106 (216)
                      .+.|..|..
T Consensus        83 ~A~N~~G~~   91 (98)
T cd05758          83 TAWNSFGSG   91 (98)
T ss_pred             EEEcCCCcc
Confidence            999988875

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.51  E-value=1.3e-13  Score=82.41  Aligned_cols=72  Identities=40%  Similarity=0.581  Sum_probs=56.2

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCC----ccCCCCC---eeee----------cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLG----SAMPEDR---MSVL----------PSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~----~~~~~~~---~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |+.+.|.|.+.+.|.|.|.|+++.    ..+....   ....          ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999842    2221111   1111          1147999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy573          196 ISASATLTV  204 (216)
Q Consensus       196 ~~~~~~l~v  204 (216)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            998888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.51  E-value=1.6e-13  Score=79.95  Aligned_cols=69  Identities=35%  Similarity=0.527  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTV  204 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v  204 (216)
                      +.|.|.+.|.|.|.+.|++++...         ...+......++|.|.++..+|.|.|.|.+.|..|.. ++.+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            479999999999999999975421         1223333456789999999999999999999999974 66666653

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.51  E-value=6.8e-14  Score=78.06  Aligned_cols=64  Identities=25%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +.|.|.+ .+.|.|.+.|||+|..+...       ...+.|.|.++..+|+|.|+|.+.|..|.. ...+.+.
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~   64 (67)
T cd05863           1 VKLPVKV-AAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLE   64 (67)
T ss_pred             CEEEEEE-EEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEE
Confidence            4789999 89999999999999988421       234689999999999999999999988754 3334443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.51  E-value=1.3e-13  Score=80.11  Aligned_cols=78  Identities=24%  Similarity=0.508  Sum_probs=60.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      |...|.++.+.+|+++.|.|.+ .+.|.| .+.|++++..+...    . ....+.|.|.++  .|+|.|.|.+.|..|.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~----~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDP----P-APSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCC----C-CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            3456778899999999999998 899999 79999999987431    1 122457888887  4789999999998886


Q ss_pred             cccceeE
Q psy573          106 RESTDAV  112 (216)
Q Consensus       106 ~~~~~~~  112 (216)
                      ..+...+
T Consensus        73 ~~s~~a~   79 (81)
T cd05749          73 TTSRTGT   79 (81)
T ss_pred             EEeeeEE
Confidence            5444333

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=1.5e-13  Score=77.86  Aligned_cols=62  Identities=35%  Similarity=0.770  Sum_probs=52.5

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +.|.|.+ .+.|.|.+.|++++..+.  ...++....++.|.|.++..+|+|.|.|.+.|..|..
T Consensus         1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   62 (69)
T cd05746           1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA   62 (69)
T ss_pred             CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence            5799998 788999999999998773  3344556667799999999999999999999988875

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.50  E-value=4.4e-13  Score=77.57  Aligned_cols=71  Identities=25%  Similarity=0.526  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      +.|.|.+.|.|.|.+.|++++..+...   +.... ....|.|.++..+|.|.|+|.+.|..|.....+.|.|..
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            368999999999999999999876532   22222 235699999999999999999999999999999988863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.49  E-value=3.3e-13  Score=77.66  Aligned_cols=70  Identities=34%  Similarity=0.562  Sum_probs=53.4

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--C--cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--G--TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +.|.|.+ .+.|.|.+.|+|++..+... ..++....  .  ..|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus         1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRV-SAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEE-eecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            4799998 89999999999999887432 23343322  1  269999999999999999999998875 3344443

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=3.1e-13  Score=76.65  Aligned_cols=67  Identities=28%  Similarity=0.635  Sum_probs=53.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      ++|.|.+ .+.|.+.+.|++++..+.   ..++....+..|.|.+++.+|+|.|.|.+.|..|.. .....|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l   67 (69)
T cd05725           1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASL   67 (69)
T ss_pred             CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEE
Confidence            5799998 888999999999977652   234445567789999999999999999999988765 333444

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.48  E-value=4.5e-13  Score=77.38  Aligned_cols=66  Identities=20%  Similarity=0.400  Sum_probs=55.3

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+...|....+.+|+.+.|.|.+.+.|. ..+.|++++..+..      ....|.|.++ .+|+|.|.|.+.|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4566778889999999999999988875 46999999987632      3567999999 99999999999876

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.48  E-value=2.5e-13  Score=78.44  Aligned_cols=66  Identities=26%  Similarity=0.551  Sum_probs=53.2

Q ss_pred             EEEEEEeCC-CCCcEEEEeeCCccCCCCCe-e---ee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRM-S---VL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~---~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      +.|.|.+.+ .|.|.+.|++++..+..... .   ..   ....|.|.++..+|.|.|+|.+.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 89999999999987754321 1   11   2357999999999999999999999999777664

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=3e-13  Score=77.04  Aligned_cols=70  Identities=26%  Similarity=0.584  Sum_probs=54.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +.|.|.+ .+.|.|.+.|++++..+..  ........+..|.|.++..+|+|.|.|.+.|..|.. ..++.|.|
T Consensus         1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIA-EGLPTPEVHWDRIDGPLSP--NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCcCCCC--CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            4789998 8999999999999886632  122223456789999999999999999999998875 44455544

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=8.4e-13  Score=75.97  Aligned_cols=71  Identities=35%  Similarity=0.663  Sum_probs=55.5

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      |+.+.|.|.+ .+.|.+.+.|++ ++..+.  ...+.....+++|.|.++..+|+|.|.|.+.|..|.. ...+.|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   72 (74)
T cd05764           1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVEL   72 (74)
T ss_pred             CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEE
Confidence            7899999998 788999999997 565552  2334445566789999999999999999999988764 334444

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=5.8e-13  Score=78.58  Aligned_cols=72  Identities=22%  Similarity=0.451  Sum_probs=56.8

Q ss_pred             CCcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe-----e----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          133 GSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM-----S----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       133 g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~-----~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+.....     .    ....+.|.|.+++.+|+|.|.|.+.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999988  8889999987765432110     0    012357999999999999999999999999888887


Q ss_pred             EEE
Q psy573          202 LTV  204 (216)
Q Consensus       202 l~v  204 (216)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.47  E-value=3e-13  Score=76.92  Aligned_cols=61  Identities=30%  Similarity=0.486  Sum_probs=50.4

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +.|.|.+ .+.|.|.+.|+|++..+...  .+. ...+..|.|.++..+|+|.|+|.+.|..|..
T Consensus         1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~   61 (71)
T cd04976           1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRT-KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL   61 (71)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCC--CEE-EcCCCEEEECcCCHHHCEEEEEEEEcCCccE
Confidence            4689998 88899999999999988433  222 3456789999999999999999999987764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.47  E-value=4.9e-13  Score=79.52  Aligned_cols=74  Identities=27%  Similarity=0.444  Sum_probs=58.9

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +...+.+|+.+.|.|..+.+.|.+.+.|++++..+......+.... .++.|.|.+++.+|+|.|.|.+.+....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            3467899999999999888999999999999875432223333333 4789999999999999999999986543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=4.7e-13  Score=78.01  Aligned_cols=72  Identities=32%  Similarity=0.531  Sum_probs=54.8

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      ++|.|.+ .+.|.|.+.|++++.....      ....++....+++|.|.++..+|+|.|.|.+.|..|...+..+.|.
T Consensus         1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            5799998 7899999999996432211      1234455556688999999999999999999999887656555554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.46  E-value=1.8e-12  Score=76.67  Aligned_cols=78  Identities=29%  Similarity=0.585  Sum_probs=63.5

Q ss_pred             eCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ..|....+..|+.+.|.|.+.+ .|.+.+.|++++..++..  .....+.|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~   83 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT   83 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence            3455668889999999999864 688899999988765432  1224578999999999999999999999999888776


Q ss_pred             E
Q psy573          202 L  202 (216)
Q Consensus       202 l  202 (216)
                      |
T Consensus        84 l   84 (85)
T cd05754          84 L   84 (85)
T ss_pred             E
Confidence            5

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.46  E-value=1.3e-12  Score=77.98  Aligned_cols=83  Identities=27%  Similarity=0.475  Sum_probs=61.6

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      |..+.+.+|+.+.|.|.+ .+ |.+.+.||+++..+....  ..++... ...|.|.+++.+|+|.|.|.+.+..+....
T Consensus         3 ~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           3 EKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             ceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            456788999999999998 44 778999999988764322  1233333 346999999999999999999877655445


Q ss_pred             ceeEEEEe
Q psy573          109 TDAVLRVL  116 (216)
Q Consensus       109 ~~~~l~v~  116 (216)
                      .+..|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            55566553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.46  E-value=7.2e-13  Score=77.68  Aligned_cols=70  Identities=29%  Similarity=0.577  Sum_probs=56.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|....+.+|+++.|.|.+ . .+.+.+.|++++..+.... .++.+ .++.|.|.+++.+|+|.|.|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~-~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPES-AKYLL-YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCC-ceEEE-ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            5677889999999999997 3 4678999999999985432 34444 45679999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.46  E-value=1e-12  Score=78.34  Aligned_cols=77  Identities=19%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             eeEeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..+..|+.+.|.|...+.     |.|.+.|+|++..+...+......+.|.|.++..+|+|.|+|.+.|..+.....+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            467789999999987432     567999999999887665544467889999999999999999999988765554444


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .+
T Consensus        85 t~   86 (92)
T cd05757          85 TI   86 (92)
T ss_pred             EE
Confidence            33

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.45  E-value=4.2e-13  Score=78.94  Aligned_cols=77  Identities=23%  Similarity=0.473  Sum_probs=57.7

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      .....|+.+.|.|.+ .+.|.+.+.|++++..+...... ........|.|.+++.+|+|.|.|.+.|..|.. ...+.|
T Consensus         4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v   80 (82)
T cd05856           4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKV   80 (82)
T ss_pred             eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEE
Confidence            346679999999998 77888999999998876432211 112234579999999999999999999988764 334444

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.45  E-value=1.1e-12  Score=75.47  Aligned_cols=70  Identities=31%  Similarity=0.679  Sum_probs=53.8

Q ss_pred             cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      .+.|.|.+ .+.|.|.+.|++++..+...  .++...   ....|.|.++..+|+|.|+|.+.|..|.. ..++.|.
T Consensus         1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05748           1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLS--GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK   73 (74)
T ss_pred             CEEEEeeE-eeeCCCeEEEEECCEEcCCC--CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence            47899998 89999999999999987332  233332   24579999999999999999999988864 3344443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=1.1e-12  Score=75.93  Aligned_cols=70  Identities=31%  Similarity=0.642  Sum_probs=53.5

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCC----CCCceEEEEEEcCCCCcccceeE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      +.|.|.+ .+.|.|.+.|++++..+......++.. ..++.|.|.++..    +|+|.|.|.+.|..|...+..+.
T Consensus         1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05733           1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH   75 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence            4789998 889999999999999875433334443 3467899998754    78999999999998876554433

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.45  E-value=3.8e-12  Score=78.68  Aligned_cols=79  Identities=28%  Similarity=0.473  Sum_probs=60.2

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-------cCcEEEEcccC-CCCCceEEEEEEcCCCCcccc
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-------DGTNLAIQDSR-KTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .|..+.|.|.+ .+.|.+.+.|++++..+... ..++...       ..+.|.|.++. .+|.|.|.|.+.|..|.. ..
T Consensus        22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~   98 (109)
T cd05773          22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL   98 (109)
T ss_pred             CCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence            46789999999 78999999999999887432 2232211       13579999997 699999999999999875 55


Q ss_pred             eeEEEEeecc
Q psy573          110 DAVLRVLVKP  119 (216)
Q Consensus       110 ~~~l~v~~~p  119 (216)
                      .+.|.+...|
T Consensus        99 ~i~L~~~~~p  108 (109)
T cd05773          99 DIQLVSTSRP  108 (109)
T ss_pred             EEEEEecCCC
Confidence            6777776554

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.45  E-value=2.6e-12  Score=76.62  Aligned_cols=81  Identities=23%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCc-ceEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISAS  199 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~-~~~~~  199 (216)
                      +....+..|+.+.|.|.+.+ |.+.+.|++++..+...    .........|.|.++..+|+|.|.|.+.+..+ ....+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            34457788999999999976 88899999998776543    12222345699999999999999999987654 46667


Q ss_pred             EEEEEEe
Q psy573          200 ATLTVQS  206 (216)
Q Consensus       200 ~~l~v~~  206 (216)
                      ..|.|.+
T Consensus        82 ~~l~V~~   88 (89)
T cd04979          82 YSLNVLE   88 (89)
T ss_pred             EEEEEec
Confidence            7777653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.44  E-value=3.9e-12  Score=76.19  Aligned_cols=79  Identities=25%  Similarity=0.462  Sum_probs=57.6

Q ss_pred             ceEEeCCCceeEe---CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573          119 PYIIRGPKDTTVS---AGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDGGEYVCEAENA  192 (216)
Q Consensus       119 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~  192 (216)
                      |.+...+....+.   .|+.+.|.|.+.+.|.|.+.|++++..+...  .......+.|.|.++. .+|.|.|+|.+.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence            3344444544433   3467999999999999999999999877321  1222345678898876 48999999999999


Q ss_pred             CcceE
Q psy573          193 VGKIS  197 (216)
Q Consensus       193 ~~~~~  197 (216)
                      .|...
T Consensus        82 ~G~~~   86 (91)
T cd04967          82 VGTVL   86 (91)
T ss_pred             CCEEE
Confidence            99744

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.44  E-value=3.6e-12  Score=74.76  Aligned_cols=68  Identities=22%  Similarity=0.387  Sum_probs=55.9

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      |....+..|+++.|.|.+.+ +.+.+.|++++..+... .......+.|.|.+++.+|+|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            56678899999999999864 67899999999988654 2233456779999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.44  E-value=5.9e-13  Score=75.18  Aligned_cols=60  Identities=27%  Similarity=0.473  Sum_probs=49.6

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +.|.|.+ .+.|.|.+.||+++..+...  .+  ...+..|.|.++..+|+|.|+|.+.|..|..
T Consensus         1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~   60 (70)
T cd05864           1 VKIPVKY-YGYPPPEVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKE   60 (70)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence            4689998 89999999999999988432  22  2345689999999999999999999998754

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.44  E-value=3e-12  Score=75.33  Aligned_cols=73  Identities=26%  Similarity=0.515  Sum_probs=55.8

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCC-----Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc--ceEEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG--KISASATL  202 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~--~~~~~~~l  202 (216)
                      |+++.|.|.+.+.|.+.+.|++.++.....     .....   ....|.|.+++.+|+|.|.|.+.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            788999999999999999999876543211     11111   235799999999999999999999876  57777777


Q ss_pred             EEE
Q psy573          203 TVQ  205 (216)
Q Consensus       203 ~v~  205 (216)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.43  E-value=1.5e-12  Score=75.34  Aligned_cols=62  Identities=29%  Similarity=0.567  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCC---Ceee-ecCCeEEEecCCC----CCCeEEEEEEEcCCcceE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSV-LPSRSLQLSDVRL----EDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~~~  197 (216)
                      +.|.|.+.|.|.|++.|++++..+...   +... ...+.|.|..+..    +|+|.|.|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            468999999999999999999876422   2222 2457899988754    689999999999999743

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.43  E-value=1.9e-12  Score=77.28  Aligned_cols=75  Identities=20%  Similarity=0.376  Sum_probs=54.0

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCC----EEeccccCceEEE----------ecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNG----HPIDFENSKRLRL----------VDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |+.++|.|.+ .+.|.|.+.|++++    ..+..........          .....|.|.+++.+|+|.|.|.+.|..|
T Consensus         1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            7889999998 88999999999963    2221111111111          1124799999999999999999999988


Q ss_pred             CcccceeEEEE
Q psy573          105 TRESTDAVLRV  115 (216)
Q Consensus       105 ~~~~~~~~l~v  115 (216)
                      .. ..++.|.|
T Consensus        80 ~~-~~sa~L~V   89 (90)
T cd04974          80 PS-HHSAWLTV   89 (90)
T ss_pred             cc-cCCEEEEe
Confidence            75 44566665

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.43  E-value=1.5e-12  Score=77.77  Aligned_cols=75  Identities=23%  Similarity=0.418  Sum_probs=53.9

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeC----CEEeccccCceEEEe----------cCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |+.+.|.|.+ .+.|.|.+.|+++    +..+...........          ....|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            7899999999 8889999999984    333321111111111          114799999999999999999999988


Q ss_pred             CcccceeEEEE
Q psy573          105 TRESTDAVLRV  115 (216)
Q Consensus       105 ~~~~~~~~l~v  115 (216)
                      .. ..+..|.|
T Consensus        80 ~~-~~~a~L~V   89 (90)
T cd05858          80 IS-HHSAWLTV   89 (90)
T ss_pred             cc-cceEEEEE
Confidence            75 44566655

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.43  E-value=2.7e-12  Score=74.14  Aligned_cols=63  Identities=32%  Similarity=0.531  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCC---CCCeee-ecCCeEEEecCCC----CCCeEEEEEEEcCCcceEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSV-LPSRSLQLSDVRL----EDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~~~~  198 (216)
                      +.|.|.+.|.|.|.+.|++++..+.   ..+... ...++|.|..+..    +|.|.|.|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            3689999999999999999998653   223333 2457899987642    4699999999999997443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.43  E-value=2.4e-12  Score=74.41  Aligned_cols=69  Identities=25%  Similarity=0.621  Sum_probs=51.7

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCC----CCCceEEEEEEcCCCCccccee
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      +.|.|.+ .+.|.|.+.|++++..+........... .+++|.|..+..    .|+|.|.|.+.|..|...+..+
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI   74 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence            4789998 8999999999999988743333334333 467888887764    3789999999998887654433

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.42  E-value=3.2e-12  Score=76.69  Aligned_cols=76  Identities=25%  Similarity=0.514  Sum_probs=56.4

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeee----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++.+..+         ...++...    ....|.|.++..+|.|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            5668899999999999999999999999877532         12232222    1357999999999999999999872


Q ss_pred             CcceEEEEEE
Q psy573          193 VGKISASATL  202 (216)
Q Consensus       193 ~~~~~~~~~l  202 (216)
                       -...+...|
T Consensus        85 -~~~~~~~~~   93 (95)
T cd05882          85 -PVRTAKATV   93 (95)
T ss_pred             -ccccEEEEE
Confidence             234444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.42  E-value=2.3e-12  Score=74.42  Aligned_cols=69  Identities=30%  Similarity=0.620  Sum_probs=52.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccC----CCCCceEEEEEEcCCCCccccee
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSR----KTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      +.|.|.+ .+.|.|.+.|++++..+......++.. ..++.|.|.++.    .+|+|.|.|.+.|..|...+..+
T Consensus         1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05875           1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI   74 (77)
T ss_pred             CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence            4689999 899999999999998764334444444 356789998764    24699999999999887655443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.42  E-value=2.7e-12  Score=74.13  Aligned_cols=63  Identities=24%  Similarity=0.451  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCC---CCeeee-cCCeEEEecCCCC----CCeEEEEEEEcCCcceEE
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRLE----DGGEYVCEAENAVGKISA  198 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~---~~~~~~-~~~~l~i~~~~~~----d~g~y~C~~~n~~~~~~~  198 (216)
                      +.|.|.+.|.|.|++.|++++..+..   ...... .+++|.|..+..+    |.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            46899999999999999999887632   222222 4578888877643    789999999999998544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.42  E-value=2.7e-12  Score=76.86  Aligned_cols=82  Identities=39%  Similarity=0.643  Sum_probs=59.9

Q ss_pred             cceEecccceEEec---CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573           25 EEFRVQPKSQRVAA---GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~~~~~~---G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~  100 (216)
                      |.|...|....+.+   |..+.|.|.+ .+.|.+.+.|++++..+......++.. .++.|.|.++. .+|+|.|+|.+.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSL-VGGNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEE-ECCEEEEecCCccCCCEEEEEEEE
Confidence            34555566655444   4679999998 778999999999998874333333433 35679998876 489999999999


Q ss_pred             cCCCCccc
Q psy573          101 NVAGTRES  108 (216)
Q Consensus       101 ~~~~~~~~  108 (216)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            98876533

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.42  E-value=2.5e-12  Score=75.40  Aligned_cols=74  Identities=26%  Similarity=0.532  Sum_probs=53.8

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCE---Eecccc---CceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGH---PIDFEN---SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~---~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      |+.+.|.|.+ .+.|.+.+.||+++.   .+....   ..++.....+.|.|.++..+|+|.|.|.+.|..|.. ...+.
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   78 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFP   78 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEE
Confidence            7899999998 888999999999732   111111   122333445689999999999999999999988864 33444


Q ss_pred             EE
Q psy573          113 LR  114 (216)
Q Consensus       113 l~  114 (216)
                      |.
T Consensus        79 l~   80 (81)
T cd05765          79 LS   80 (81)
T ss_pred             Ee
Confidence            43

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.41  E-value=1.1e-12  Score=74.26  Aligned_cols=60  Identities=28%  Similarity=0.474  Sum_probs=48.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      +.|.|.+ .+.|.|.+.|++++..+... ..++. ..+.+|.|.++..+|+|.|+|.+.+...
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           1 YRLTPKV-KAFPAPEVIWLKDGLPAAEK-CSRYH-VDGYSLVIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             CeEEeeE-EEcCCCeEEEEECCEECCCC-CcEEE-eCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence            3689998 89999999999999887432 23333 3456899999999999999999998643

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=1.2e-12  Score=74.69  Aligned_cols=70  Identities=29%  Similarity=0.514  Sum_probs=52.6

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +.|.|.+ .+.|.|.+.|++++..+...  .......+..|.|.++..+|+|.|+|.+.|..|.. ...+.|.|
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIA-EGLPTPEISWIKIGGELPAD--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCeECCCC--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            4789998 88899999999998876321  11122335689999999999999999999988764 44455544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.41  E-value=2.2e-12  Score=74.41  Aligned_cols=72  Identities=35%  Similarity=0.689  Sum_probs=53.4

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEe-ccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +.|.|.+ .+.|.|.+.|++++... ......++... .++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus         1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   74 (75)
T cd05763           1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV   74 (75)
T ss_pred             CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence            4689998 89999999999987643 12222333332 35689999999999999999999988764 44555554

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.41  E-value=3.9e-12  Score=73.57  Aligned_cols=73  Identities=41%  Similarity=0.643  Sum_probs=56.2

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +.|.|.+ .+.|.+.+.|++++..+......++.... +..|.|.++..+|.|.|+|.+.|..|.. ...+.|.|.
T Consensus         1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            3689998 78899999999999987544434444443 3479999999999999999999988875 445566553

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.41  E-value=1.9e-12  Score=75.20  Aligned_cols=65  Identities=28%  Similarity=0.548  Sum_probs=52.3

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |+.+.|.|.+ .+.|.|.+.|++++..+...  .++...   ..+.|.|.++..+|+|.|.|.+.|..|..
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDS--ARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEE-EEecCCEEEEEECCeECCCC--CCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            7899999998 78899999999998876332  233222   23579999999999999999999988764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.39  E-value=2.1e-12  Score=74.63  Aligned_cols=66  Identities=27%  Similarity=0.518  Sum_probs=51.5

Q ss_pred             EEEEEEeCC-CCCcEEEEeeCCccCCCCC-----eeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          136 IVFECSVGG-DAVLTVHWKRLGSAMPEDR-----MSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~-----~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      +.|.|.+.+ .|.+.+.|++++..+....     ....   ..+.|.|.++..+|+|.|.|.+.|..|....+++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999864 6778999999998775321     1111   2357999999999999999999999999887765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.39  E-value=4.5e-12  Score=71.54  Aligned_cols=62  Identities=24%  Similarity=0.493  Sum_probs=48.8

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |+.+.|.|.+ .+.|.|.+.|++++..+..  ..+.. .....|.|.++.  |+|.|+|.+.|..|..
T Consensus         1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~-~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~   62 (69)
T cd05739           1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMP-VGRNVLELTNIY--ESANYTCVAISSLGMI   62 (69)
T ss_pred             CCeEEEEEEe-eecCCCEEEEEECCEECCC--cccee-cCccEEEEeccc--cCeeEEEEEEeCCCEE
Confidence            7889999999 8999999999999987632  22222 234578898874  7899999999988764

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.39  E-value=2.7e-12  Score=75.24  Aligned_cols=74  Identities=23%  Similarity=0.331  Sum_probs=56.9

Q ss_pred             CceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLT  203 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~  203 (216)
                      ....+.+|+++.|.|.+. +.+.+.+.|++++..+...    .....|.|.+++.+|+|.|+|.+.+..+. .++.+.|.
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            344788999999999985 4566789999999765421    23467999999999999999999998875 33344443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.38  E-value=1.1e-11  Score=73.30  Aligned_cols=76  Identities=28%  Similarity=0.504  Sum_probs=60.6

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-ee----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VL----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...... ..    ....|.|.++..+|.|.|.|.+.|..|..+.++.|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            4567999999999999999999999998776533211 11    124688999999999999999999999988887765


Q ss_pred             E
Q psy573          204 V  204 (216)
Q Consensus       204 v  204 (216)
                      |
T Consensus        85 v   85 (85)
T cd05729          85 V   85 (85)
T ss_pred             C
Confidence            3

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.38  E-value=4.1e-12  Score=73.17  Aligned_cols=62  Identities=23%  Similarity=0.420  Sum_probs=48.3

Q ss_pred             EEeeCCCCCCCCeeEEeeCCEEeccccCceEE--Ee----cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           44 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLR--LV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        44 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |.|.+ .+.|.|.+.|||++..+.........  ..    ..+.|.|.++...|+|.|+|.+.|..|..
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~   70 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED   70 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence            67888 89999999999999988533221111  11    13479999999999999999999998865

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.37  E-value=5.5e-12  Score=73.46  Aligned_cols=62  Identities=26%  Similarity=0.471  Sum_probs=48.4

Q ss_pred             EEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--------cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           44 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        44 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      |.|.+ .+.|.|.+.||++|..+...........        ..+.|.|.++..+|+|.|+|.+.|..|..
T Consensus         3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971           3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence            68888 8999999999999998854332111111        13469999999999999999999998875

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>KOG3515|consensus

Probab=99.37  E-value=4.6e-12  Score=99.55  Aligned_cols=169  Identities=18%  Similarity=0.248  Sum_probs=124.2

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      ..+..|+.|.|.|.+..+.|...+.||+.++...    .+.....+..|......++.-+.|.|.+.+..+........+
T Consensus        17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l   92 (741)
T KOG3515|consen   17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL   92 (741)
T ss_pred             hhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecceee
Confidence            3788999999999996677788999999988763    444445566788889888888999999999877776777888


Q ss_pred             EEeecceEEeCCCceeEeCCCcEEEEEEe--CCCCCcEEEEeeCCccCCCC------------CeeeecCCeEEEecCCC
Q psy573          114 RVLVKPYIIRGPKDTTVSAGSIIVFECSV--GGDAVLTVHWKRLGSAMPED------------RMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       114 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~i~W~~~~~~~~~~------------~~~~~~~~~l~i~~~~~  179 (216)
                      .+.++|.............+..+.+.|.+  .+.|.+.+.|..+.......            .......+.+.+...+.
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk  172 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK  172 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence            88888866655555566778889999965  44567789999876532110            00012235578888889


Q ss_pred             CCCeEEEEEEEcC---CcceEEEEEEEEEe
Q psy573          180 EDGGEYVCEAENA---VGKISASATLTVQS  206 (216)
Q Consensus       180 ~d~g~y~C~~~n~---~~~~~~~~~l~v~~  206 (216)
                      .++|.|+|.+.|.   .+...+...+.+..
T Consensus       173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~  202 (741)
T KOG3515|consen  173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEA  202 (741)
T ss_pred             cCCceeEcccccccCccccccceeEeeccc
Confidence            9999999999984   34444444444443

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.36  E-value=1.6e-11  Score=73.90  Aligned_cols=79  Identities=27%  Similarity=0.487  Sum_probs=57.9

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--------c-cCCCCCeeee----cCCeEEEecCCCCCCeEEEEEEEc
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--------S-AMPEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--------~-~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      +.+..+.+|+++.|.|.+.+.|.+.+.|++.+        . .....+....    ...+|.|.+++.+|+|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            35678899999999999999999999998622        1 1223343322    235799999999999999999988


Q ss_pred             CCcceEEEEEEEE
Q psy573          192 AVGKISASATLTV  204 (216)
Q Consensus       192 ~~~~~~~~~~l~v  204 (216)
                      ..+ .+.+..|.|
T Consensus        84 ~~~-~~~~~~l~v   95 (95)
T cd07701          84 MPV-KTSKAYLTV   95 (95)
T ss_pred             ecC-ccEEEEEEC
Confidence            533 355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.36  E-value=2.5e-11  Score=72.83  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=62.1

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCC---CCeeee-------cCCeEEEecCCCCC-CeEEEEEEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVL-------PSRSLQLSDVRLED-GGEYVCEAE  190 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~---~~~~~~-------~~~~l~i~~~~~~d-~g~y~C~~~  190 (216)
                      .......+.+|+.+.|.|.+.+.|.| .|.|.+++..+..   .++.+.       ..+.|.|.++...| .|.|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~   85 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW   85 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence            55566788899999999999888876 5788887766532   233332       22579999998766 799999999


Q ss_pred             cCCcceEEEEEE
Q psy573          191 NAVGKISASATL  202 (216)
Q Consensus       191 n~~~~~~~~~~l  202 (216)
                      |..|+....+.|
T Consensus        86 N~~G~d~~~i~L   97 (98)
T cd05898          86 NSFGSGTAIIQL   97 (98)
T ss_pred             eCCccceEEEEe
Confidence            999998887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.36  E-value=5.9e-12  Score=74.76  Aligned_cols=73  Identities=19%  Similarity=0.367  Sum_probs=60.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc-eEEEEEEcCCC
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNVAG  104 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~  104 (216)
                      .+.+.+.+|+.+.|.|..+.+.|.+.+.|++++.... ....++....++.|.|.++..+|+| .|.|.+.+...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i-~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI-TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc-cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            3567899999999999866899999999998765532 3456777777899999999999999 79999998653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.36  E-value=1e-11  Score=74.00  Aligned_cols=69  Identities=20%  Similarity=0.408  Sum_probs=54.1

Q ss_pred             eEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           34 QRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      ..+.+|....|.|.....    .|.+.+.|||++..+...  ... ...++.|.|.++..+|+|.|+|.+.+..+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccE-EecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            567899999999986322    257799999999988432  222 226778999999999999999999987654

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.35  E-value=1e-11  Score=73.39  Aligned_cols=72  Identities=29%  Similarity=0.487  Sum_probs=56.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      .|....+.+|+.++|.|.+..+.|.+.+.|++++..+..    . ....++.|.|.+++.+|+|.|.|.+.|..+..
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            345678899999999999844467889999998865421    1 12235689999999999999999999987764

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.34  E-value=1.9e-11  Score=67.77  Aligned_cols=63  Identities=35%  Similarity=0.711  Sum_probs=51.8

Q ss_pred             CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999988888899999999887763323333556899999999999999999998754

>PHA03376 BARF1; Provisional

Probab=99.33  E-value=6.8e-11  Score=77.17  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             ceEEecCCcEEEEeeCC--CCCCCCeeEEeeCC----EEe-----------ccccCceEEE---ecCcEEEEcccCCCCC
Q psy573           33 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNG----HPI-----------DFENSKRLRL---VDGTNLAIQDSRKTDD   92 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~--~~~~~~~~~W~~~~----~~~-----------~~~~~~~~~~---~~~~~l~i~~~~~~d~   92 (216)
                      .+.+..|+.+.|+|...  ...+...+.|+|.+    ..+           +..+.++..+   .++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            56788999999999762  12345689999942    111           1233444444   2345799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA  158 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~  158 (216)
                      |.|+|.+....... .....|.+..+-.+.+.........-+...+.|.+.++|.|.+.|.-+.+.
T Consensus       100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~  164 (221)
T PHA03376        100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  164 (221)
T ss_pred             ceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence            99999998755332 111223322222233322222233356788999999999999999876553

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.33  E-value=1.7e-11  Score=73.57  Aligned_cols=71  Identities=25%  Similarity=0.584  Sum_probs=53.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ..++.+.+|+.+.|.|.+ .+.|.+.+.|++++..+..      ....++.+.    .+..|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            346789999999999998 7788899999997753311      112333322    13589999999999999999998


Q ss_pred             cC
Q psy573          101 NV  102 (216)
Q Consensus       101 ~~  102 (216)
                      ..
T Consensus        83 t~   84 (95)
T cd05882          83 TM   84 (95)
T ss_pred             ee
Confidence            63

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.30  E-value=3.2e-11  Score=72.54  Aligned_cols=72  Identities=24%  Similarity=0.452  Sum_probs=52.9

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +.++.+.+|+++.|.|.+ .+.|.+.+.||+.+..+.      .....++...    ...+|+|.+++.+|+|.|.|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            456789999999999998 777889999997432210      0122344332    23589999999999999999998


Q ss_pred             cCC
Q psy573          101 NVA  103 (216)
Q Consensus       101 ~~~  103 (216)
                      ...
T Consensus        83 t~~   85 (95)
T cd07701          83 TMP   85 (95)
T ss_pred             eec
Confidence            743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.30  E-value=2.5e-11  Score=72.26  Aligned_cols=71  Identities=21%  Similarity=0.308  Sum_probs=56.5

Q ss_pred             CceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccC--C-CCCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          126 KDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAM--P-EDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~--~-~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ....+.+|+.+.|.|.. .+.|.+.+.|++++...  . ..+.... .++.|.+.+++.+|.|.|.|.|.|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            34578899999999976 77799999999998653  2 2333333 46899999999999999999999987554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.30  E-value=2.1e-11  Score=70.48  Aligned_cols=65  Identities=26%  Similarity=0.585  Sum_probs=48.5

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +.|.|.+..+.|.+.+.||++++.+....  ..++...   ..+.|.|.++..+|+|.|.|.+.|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            47999974456888999999998875332  1222222   23579999999999999999999987754

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.28  E-value=4.7e-11  Score=70.20  Aligned_cols=76  Identities=17%  Similarity=0.372  Sum_probs=51.7

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCC-cccceeE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGT-RESTDAV  112 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~  112 (216)
                      |++++|.|.+ .+.|.+.+.|++.++........  +....   ....|+|.+++.+|+|.|.|.+.+.... ....++.
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999998 67788999999876543111111  11111   1357999999999999999999986542 2244445


Q ss_pred             EEE
Q psy573          113 LRV  115 (216)
Q Consensus       113 l~v  115 (216)
                      +.|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            544

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.28  E-value=2.6e-11  Score=69.94  Aligned_cols=64  Identities=28%  Similarity=0.663  Sum_probs=49.2

Q ss_pred             EEEEeeCCCC-CCCCeeEEeeCCEEeccccCce-EEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           42 ALLECGPPRG-HPEPTLVWKKNGHPIDFENSKR-LRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        42 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +.|.|.+ .+ .|.+.+.|++++..+....... +...   ....|.|.++..+|+|.|.|.+.|..|..
T Consensus         1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            4689999 56 8999999999998875433222 1111   23579999999999999999999988764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.28  E-value=6.1e-11  Score=65.67  Aligned_cols=62  Identities=32%  Similarity=0.711  Sum_probs=49.7

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|+.++|.|.+ .+.+.+.+.|++++..+.   ........+..|.|.++...|+|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            58899999997 677888999999988774   122223445689999999999999999998754

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.27  E-value=2.5e-11  Score=70.88  Aligned_cols=72  Identities=35%  Similarity=0.654  Sum_probs=54.9

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      ...+.+|+.++|.|.+ .+.|...+.|++++..+...         ...+.+.++..+|.|.|.|.+.+..+...+..+.
T Consensus         8 ~~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen    8 PQSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             SSEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            3678999999999998 57777899999998777311         1227778899999999999999866544344444


Q ss_pred             EE
Q psy573          113 LR  114 (216)
Q Consensus       113 l~  114 (216)
                      |.
T Consensus        78 v~   79 (80)
T PF13895_consen   78 VT   79 (80)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

...

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.27  E-value=1.7e-10  Score=68.76  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=55.8

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC----CCCCeeeecCCeEEEecCCCCCCeEEEEEEEc-CCcceEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM----PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN-AVGKISASAT  201 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~~~~~~~~~  201 (216)
                      ...+|+.+.|.|.. +.|.+.+.|++...  ..    ..........+.|.|.++..+|+|.|.|.+.+ ..+.....+.
T Consensus         7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~   85 (91)
T cd05871           7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYT   85 (91)
T ss_pred             EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEE
Confidence            46789999999996 47889999998432  11    11122223446799999999999999999984 5555666777


Q ss_pred             EEEEe
Q psy573          202 LTVQS  206 (216)
Q Consensus       202 l~v~~  206 (216)
                      |.|..
T Consensus        86 l~v~~   90 (91)
T cd05871          86 LHVIE   90 (91)
T ss_pred             EEEec
Confidence            77653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.27  E-value=7.8e-11  Score=70.22  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=54.8

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Eecc--ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDF--ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      .+.+.+|+++.|.|..  ..|.+.+.||+...  ....  ....+... .++.|.|.+++.+|+|.|.|.+.+.......
T Consensus         5 ~~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~   81 (91)
T cd05871           5 VVYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL   81 (91)
T ss_pred             EEEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence            3567899999999986  46888999998432  1111  12233333 3467999999999999999999854433223


Q ss_pred             ceeEEEEe
Q psy573          109 TDAVLRVL  116 (216)
Q Consensus       109 ~~~~l~v~  116 (216)
                      ..+.|.|.
T Consensus        82 ~~~~l~v~   89 (91)
T cd05871          82 AKYTLHVI   89 (91)
T ss_pred             EEEEEEEe
Confidence            34555543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.27  E-value=6.5e-11  Score=72.13  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=57.3

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Ee-c-----------cccCceEEEecCcEEEEcccCCC
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PI-D-----------FENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~-~-----------~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      .+++.+..+.+|+++.|.|.. .......+.|||...     .+ .           ....+|..+..+++|.|.+++..
T Consensus         2 tie~~p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~   80 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK   80 (105)
T ss_pred             eEeccCCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence            455666778899999999975 333445899999621     11 0           12456677777889999999999


Q ss_pred             CCceEEEEEEcCCCC
Q psy573           91 DDGRYQCVVKNVAGT  105 (216)
Q Consensus        91 d~g~y~C~~~~~~~~  105 (216)
                      |+|.|.|.+.+....
T Consensus        81 D~G~Y~~~v~~~~~~   95 (105)
T cd05774          81 DTGFYTLQTITTNFQ   95 (105)
T ss_pred             cCEEEEEEEEeCCcc
Confidence            999999999886644

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.26  E-value=1.8e-11  Score=72.17  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=51.6

Q ss_pred             CCcEEEEeeCCCCC--CCCeeEEeeCCEEeccccCc--eEE----EecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           39 GDTALLECGPPRGH--PEPTLVWKKNGHPIDFENSK--RLR----LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        39 G~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~~~~--~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      |+.+.|.|.+ .+.  |.+.+.|++.+..+......  +..    ....+.|.|.+++.+|+|.|.|.+.|..+.. ..+
T Consensus         1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s   78 (84)
T cd05742           1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES   78 (84)
T ss_pred             CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence            7899999999 666  78899999877644211100  000    0123579999999999999999999987664 334


Q ss_pred             eEEE
Q psy573          111 AVLR  114 (216)
Q Consensus       111 ~~l~  114 (216)
                      ..+.
T Consensus        79 ~~v~   82 (84)
T cd05742          79 TKVN   82 (84)
T ss_pred             EEEE
Confidence            4443

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.26  E-value=1.3e-10  Score=68.66  Aligned_cols=79  Identities=29%  Similarity=0.559  Sum_probs=56.7

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceE-E-EecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL-R-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+........ . ......|.|.++..+|+|.|.|.+.+..+.. ..++
T Consensus         4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~   81 (85)
T cd05729           4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTY   81 (85)
T ss_pred             eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEE
Confidence            456789999999998 6778889999999887642211111 1 1122469999999999999999999877653 3344


Q ss_pred             EEE
Q psy573          112 VLR  114 (216)
Q Consensus       112 ~l~  114 (216)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05729          82 KVD   84 (85)
T ss_pred             EEe
Confidence            443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.24  E-value=7.6e-11  Score=70.48  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             cceEEecCCcEEEEeeCCC----------CCCCCeeEEeeCCEEeccccC-----ceEEEecCcEEEEcccCCCCCceEE
Q psy573           32 KSQRVAAGDTALLECGPPR----------GHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~----------~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~y~   96 (216)
                      ....+.+|+++.|.|....          ......+.|||++........     .|+ ...+..|.|.++..+|+|.|.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri-~~~~~~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRM-SKEEDSIWFRPAELQDSGLYT   86 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeE-EEeCCEEEEEeCChhhCeEEE
Confidence            3467889999999997511          122348999999755433221     122 234668999999999999999


Q ss_pred             EEEEcCCCC
Q psy573           97 CVVKNVAGT  105 (216)
Q Consensus        97 C~~~~~~~~  105 (216)
                      |.+.|....
T Consensus        87 C~~rN~t~C   95 (104)
T cd05896          87 CVLRNSTYC   95 (104)
T ss_pred             EEECCCCcc
Confidence            999987654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.24  E-value=3e-10  Score=68.17  Aligned_cols=80  Identities=19%  Similarity=0.355  Sum_probs=59.9

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEec-------CcEEEEcccCCCC-CceEE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTD-DGRYQ   96 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d-~g~y~   96 (216)
                      .++....+..+.+|+.+.|.|.+ .+.|.| .+.|..++..+......++.+..       .+.|.|.++...| .|.|.
T Consensus         3 P~i~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~   81 (98)
T cd05898           3 PIISSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN   81 (98)
T ss_pred             CEEecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence            33466677889999999999998 555654 67888877766544344554432       2479999998877 79999


Q ss_pred             EEEEcCCCCc
Q psy573           97 CVVKNVAGTR  106 (216)
Q Consensus        97 C~~~~~~~~~  106 (216)
                      |.+.|..|..
T Consensus        82 C~a~N~~G~d   91 (98)
T cd05898          82 CTAWNSFGSG   91 (98)
T ss_pred             EEEEeCCccc
Confidence            9999998875

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.23  E-value=7.6e-11  Score=68.81  Aligned_cols=71  Identities=34%  Similarity=0.639  Sum_probs=56.0

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc-ceEEEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISASATLTV  204 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~-~~~~~~~l~v  204 (216)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..      ....+.+..+..+|.|.|+|.+.+..+ ..+.++.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            5688999999999999888899999998765541      122277788899999999999999665 4666666654

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.23  E-value=1.1e-10  Score=68.98  Aligned_cols=73  Identities=25%  Similarity=0.427  Sum_probs=55.1

Q ss_pred             CCcEEEEEEeCCCC--CcEEEEeeCCccCCC----C--Cee----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          133 GSIIVFECSVGGDA--VLTVHWKRLGSAMPE----D--RMS----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       133 g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~----~--~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      |+++.|.|.+.+.+  ...+.|...+.....    .  +..    ....++|.|.+++.+|+|.|+|.+.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            68899999997654  457899876653311    1  000    11246799999999999999999999999888888


Q ss_pred             EEEEE
Q psy573          201 TLTVQ  205 (216)
Q Consensus       201 ~l~v~  205 (216)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.23  E-value=7.6e-11  Score=70.24  Aligned_cols=71  Identities=23%  Similarity=0.341  Sum_probs=52.6

Q ss_pred             eEEecCCcEEEEeeCCC----CCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           34 QRVAAGDTALLECGPPR----GHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      ..+..|.+..|.|.-..    ..+.+.+.|||++.++.... .++.. .+...|.|.++..+|+|.|+|.+.+..+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~-~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN-EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC-cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            45678999999996311    34567999999999875322 22222 23457999999999999999999987543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.23  E-value=9.1e-11  Score=69.71  Aligned_cols=70  Identities=20%  Similarity=0.401  Sum_probs=57.4

Q ss_pred             CceeEeCCCcEEEEEE-eCCCCCcEEEEeeCCccC--CCCCeeeecCCeEEEecCCCCCCe-EEEEEEEcCCcc
Q psy573          126 KDTTVSAGSIIVFECS-VGGDAVLTVHWKRLGSAM--PEDRMSVLPSRSLQLSDVRLEDGG-EYVCEAENAVGK  195 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~~~  195 (216)
                      ....+.+|+.+.|.|. ..+.|.|.+.|++++...  ...+.....++.|.|.+++.+|.| .|.|.|.|....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            5568889999999997 589999999999876442  234555556799999999999999 899999988644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.21  E-value=9.8e-11  Score=69.85  Aligned_cols=70  Identities=21%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc------------cCceEEEe------cCcEEEEcccCCCCCceE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE------------NSKRLRLV------DGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~~~~~------~~~~l~i~~~~~~d~g~y   95 (216)
                      +.+.+|++++|+|.+ .+.+.+.+.||++++.....            ...++...      .+.+|.|.+++.+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            467899999999998 66788899999765332111            11111111      124699999999999999


Q ss_pred             EEEEEcCCC
Q psy573           96 QCVVKNVAG  104 (216)
Q Consensus        96 ~C~~~~~~~  104 (216)
                      +|.+.+..+
T Consensus        81 ~C~v~~~~~   89 (94)
T cd07690          81 ICEVEDKKE   89 (94)
T ss_pred             EEEECCccc
Confidence            999987543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00409 IG Immunoglobulin

Probab=99.20  E-value=1.1e-09  Score=64.53  Aligned_cols=78  Identities=37%  Similarity=0.640  Sum_probs=61.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..+......   ..|.|.++..+|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999998888889999998 66554 233333322   57999999999999999999988887766676


Q ss_pred             EEE
Q psy573          202 LTV  204 (216)
Q Consensus       202 l~v  204 (216)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            665

>smart00410 IG_like Immunoglobulin like

Probab=99.20  E-value=1.1e-09  Score=64.53  Aligned_cols=78  Identities=37%  Similarity=0.640  Sum_probs=61.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..+......   ..|.|.++..+|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999998888889999998 66554 233333322   57999999999999999999988887766676


Q ss_pred             EEE
Q psy573          202 LTV  204 (216)
Q Consensus       202 l~v  204 (216)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.20  E-value=2.2e-10  Score=69.14  Aligned_cols=71  Identities=24%  Similarity=0.549  Sum_probs=51.1

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEe----cCcEEEEcccCCCCCceEEEEEEc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +.+.+.+|++++|.|.+ .+.+.+.+.|++.+.....      ....++...    ....|.|.+++.+|+|.|+|.+..
T Consensus         5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            45678999999999998 5667789999863322100      112344332    234799999999999999999986


Q ss_pred             CC
Q psy573          102 VA  103 (216)
Q Consensus       102 ~~  103 (216)
                      ..
T Consensus        84 ~~   85 (95)
T cd05717          84 MP   85 (95)
T ss_pred             CC
Confidence            54

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.20  E-value=2.3e-10  Score=68.23  Aligned_cols=77  Identities=18%  Similarity=0.286  Sum_probs=56.5

Q ss_pred             eeEeCCCcEEEEEEe-C----CCCCcEEEEeeCCccCCCCCe--ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcc----
Q psy573          128 TTVSAGSIIVFECSV-G----GDAVLTVHWKRLGSAMPEDRM--SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGK----  195 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~-~----~~p~~~i~W~~~~~~~~~~~~--~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~----  195 (216)
                      ..+..|....|.|.- .    ..+.+++.|+|++..+.....  .. .....|.|.++..+|+|.|+|.+.+..+.    
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            356678899999973 2    346679999999988764432  22 13457999999999999999999998654    


Q ss_pred             eEEEEEEEE
Q psy573          196 ISASATLTV  204 (216)
Q Consensus       196 ~~~~~~l~v  204 (216)
                      .++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence            455555544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.19  E-value=5.7e-10  Score=67.37  Aligned_cols=77  Identities=26%  Similarity=0.503  Sum_probs=54.8

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------CCCCCeeee----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ....+.+|+.+.|.|.+.+.+.+.+.|++.+..         ....++...    ....|.|.+++.+|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            456788999999999998888889999752221         122233221    2346999999999999999999876


Q ss_pred             CcceEEEEEEE
Q psy573          193 VGKISASATLT  203 (216)
Q Consensus       193 ~~~~~~~~~l~  203 (216)
                      .. .+....|.
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            53 35555454

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.19  E-value=4.1e-10  Score=67.39  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             ceeEeCCCcEEEEEEeCC-----------CCCcEEEEeeCCccCCCCC-------eeeecCCeEEEecCCCCCCeEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGG-----------DAVLTVHWKRLGSAMPEDR-------MSVLPSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~-----------~p~~~i~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      ...+.+|+.+.|.|....           ....++.|+|++.......       .....+..|.|.++..+|+|.|+|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            356789999999999621           1234799999974433211       2223567899999999999999999


Q ss_pred             EEcCCcceEEEEEEEE
Q psy573          189 AENAVGKISASATLTV  204 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v  204 (216)
                      +.|.......+++|+|
T Consensus        89 ~rN~t~C~~~~i~l~V  104 (104)
T cd05896          89 LRNSTYCMKVSMSLTV  104 (104)
T ss_pred             ECCCCcceEEEEEEEC
Confidence            9999888888877754

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.17  E-value=2.5e-10  Score=68.52  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEe----------------ccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPI----------------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |++|+|.|.. .......+.|++.....                .....+++.+..+++|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            7899999987 44556689999865321                112345566666789999999999999999999987


Q ss_pred             CCCcccceeEE
Q psy573          103 AGTRESTDAVL  113 (216)
Q Consensus       103 ~~~~~~~~~~l  113 (216)
                      .+......+.|
T Consensus        80 ~~~~~~~~~~l   90 (92)
T cd05741          80 NGVTENAKFFL   90 (92)
T ss_pred             CCcEEEEEEEE
Confidence            65544433433

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.16  E-value=6.3e-10  Score=64.81  Aligned_cols=66  Identities=26%  Similarity=0.446  Sum_probs=51.5

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      ....+.+|+.+.|.|..  ..+...+.|++++..+..  ..++..... .|.|.+++.+|+|.|.|.....
T Consensus         4 ~~~tv~~g~~v~L~C~~--~s~~A~v~W~~ng~~l~~--~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQL--RSNLASPVWLFNGTPLNA--QFSYRVGTD-GLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCC--CCCCccEEEEECCcccCC--CcceEEeCC-CCEEEECCHhhCEEEEEEEecC
Confidence            35688999999999987  345679999999998743  344444433 4779999999999999998743

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.15  E-value=3.8e-10  Score=68.25  Aligned_cols=79  Identities=18%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             ecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc---------------ccCceEEEec-CcEEEEcccCCCCCceEEEEEE
Q psy573           37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------------ENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ..|++|+|+|..........+.|++....+..               ....++.+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998733244568999986432211               1113444434 3789999999999999999999


Q ss_pred             cCCCCcccceeEEEE
Q psy573          101 NVAGTRESTDAVLRV  115 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v  115 (216)
                      ...+......+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            877665555555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.14  E-value=1.5e-10  Score=64.50  Aligned_cols=57  Identities=37%  Similarity=0.669  Sum_probs=44.7

Q ss_pred             CCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeee--cCC----eEEEecCCCCCCeEEEEEE
Q psy573          133 GSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL--PSR----SLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       133 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~d~g~y~C~~  189 (216)
                      |+.+.|.|.+ .+.+...+.|++++...........  ...    .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 7777889999999887654432221  122    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00410 IG_like Immunoglobulin like

Probab=99.13  E-value=1.6e-09  Score=63.71  Aligned_cols=72  Identities=29%  Similarity=0.624  Sum_probs=54.9

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      ....+..|+++.|.|.+ .+.+.+.+.|+++ +..+.  ...+......   ..|.|.++...|+|.|.|.+.+..+..
T Consensus         2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00410        2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence            45678899999999998 5557789999998 76663  2233333322   579999999999999999999765543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.13  E-value=1.6e-09  Score=63.71  Aligned_cols=72  Identities=29%  Similarity=0.624  Sum_probs=54.9

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      ....+..|+++.|.|.+ .+.+.+.+.|+++ +..+.  ...+......   ..|.|.++...|+|.|.|.+.+..+..
T Consensus         2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~   77 (86)
T smart00409        2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA   77 (86)
T ss_pred             CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence            45678899999999998 5557789999998 76663  2233333322   579999999999999999999765543

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.11  E-value=8.5e-11  Score=65.51  Aligned_cols=60  Identities=30%  Similarity=0.632  Sum_probs=43.0

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc----EEEEcccCCCCCceEEEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~   99 (216)
                      |+.++|.|.+....+...+.|++++........... .....    .|.|.+++.+|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNR-STNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEE-EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEe-ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            789999998734556779999998775522211111 11222    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.11  E-value=1.7e-09  Score=67.21  Aligned_cols=76  Identities=21%  Similarity=0.374  Sum_probs=52.7

Q ss_pred             cccceEEecCCcEEEEeeCCCC---CCCCeeEEe---------------eCCEEec---cccCceEEEe-----cCcEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRG---HPEPTLVWK---------------KNGHPID---FENSKRLRLV-----DGTNLA   83 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~---------------~~~~~~~---~~~~~~~~~~-----~~~~l~   83 (216)
                      .+..+.+..|+.+.|.|.....   .+..++.|.               +++....   ....+|+.+.     .+.+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            3456788999999999997332   234689992               2333321   1223355442     346899


Q ss_pred             EcccCCCCCceEEEEEEcCCCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      |.+++.+|.|.|+|.+.+....
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCc
Confidence            9999999999999999987653

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.11  E-value=1.7e-09  Score=75.38  Aligned_cols=68  Identities=26%  Similarity=0.556  Sum_probs=53.2

Q ss_pred             ceEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcC
Q psy573           33 SQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +..+.+|+.+.|.|.+..+    .|.+.+.|||+++.+..  ..++... +++.|.|.+++.+|+|.|+|.+...
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~--~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY--TDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC--CCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence            4567899999999987332    35789999999998842  2344443 3458999999999999999999874

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.10  E-value=1.1e-09  Score=62.92  Aligned_cols=60  Identities=20%  Similarity=0.298  Sum_probs=46.9

Q ss_pred             EEEEEEe-CCCCCcEEEEeeCCccCCCCCee------eecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          136 IVFECSV-GGDAVLTVHWKRLGSAMPEDRMS------VLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       136 ~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +.|.|.. .+.|.+.|.|++++..+......      ....++|.+.....+|++.|+|.|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            6899998 56688999999999988643211      112346888888889999999999998875

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.09  E-value=3.8e-09  Score=63.07  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCC--C-Ceeee------cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPE--D-RMSVL------PSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~--~-~~~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ....+.+|+.+.|.|.+.++|.|. +.|.+++..+..  . .....      ..+.|.+..+..++.|.|+|.|.|...+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            345788999999999999999997 999998765421  1 11111      1256999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy573          196 ISASATLTVQ  205 (216)
Q Consensus       196 ~~~~~~l~v~  205 (216)
                      .+.++.|.|+
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9999988875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.09  E-value=1.9e-09  Score=64.28  Aligned_cols=71  Identities=17%  Similarity=0.376  Sum_probs=51.3

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEec----CcEEEEcccCCCCCceEEEEEEc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +++.+.+|++++|.|.+ .+.....+.|++.+..+.      .....|+....    ..+|+|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            35788999999999998 555566788987664331      12334444333    23699999999999999999976


Q ss_pred             CC
Q psy573          102 VA  103 (216)
Q Consensus       102 ~~  103 (216)
                      ..
T Consensus        84 ~p   85 (95)
T cd05881          84 DP   85 (95)
T ss_pred             cc
Confidence            43

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.08  E-value=3.1e-09  Score=64.81  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC--------------------CCCCeeeecCCeEEEecCCCCCCeE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------------------~~~~~~~~~~~~l~i~~~~~~d~g~  184 (216)
                      +....+.+|+++.|.|.........+.|+|.....                    ...+.....+++|.|.+++.+|+|.
T Consensus         5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~   84 (105)
T cd05774           5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF   84 (105)
T ss_pred             ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence            34456789999999998755555689999963211                    1123344456789999999999999


Q ss_pred             EEEEEEcCCc-ceEEEEEEE
Q psy573          185 YVCEAENAVG-KISASATLT  203 (216)
Q Consensus       185 y~C~~~n~~~-~~~~~~~l~  203 (216)
                      |+|.+.+... .....+.|.
T Consensus        85 Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          85 YTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEeCCccEEEEEEEEE
Confidence            9999998874 455555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.08  E-value=7.9e-10  Score=66.05  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |.+...| ...+.+|++|+|.|..  ..+...+.|+++|........  ......+.|.|.+++.+|+|.|+|...+.
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKP--PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEec--CCCCCEEEEEECCCCcccccc--CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3444445 3467899999999986  456678999999875422110  11122457999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.08  E-value=8.3e-10  Score=65.89  Aligned_cols=67  Identities=22%  Similarity=0.447  Sum_probs=49.2

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccC-CC--------------CCeee------ecCCeEEEecCCCCCCeEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PE--------------DRMSV------LPSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~~--------------~~~~~------~~~~~l~i~~~~~~d~g~y~C  187 (216)
                      .+..|++++|.|.+.+.+.+.+.|++++... ..              .+...      .....|.|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            5678999999999998899999999665321 11              00000      012359999999999999999


Q ss_pred             EEEcCCcc
Q psy573          188 EAENAVGK  195 (216)
Q Consensus       188 ~~~n~~~~  195 (216)
                      .+.|..+.
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99887554

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.07  E-value=1.6e-09  Score=67.17  Aligned_cols=74  Identities=22%  Similarity=0.381  Sum_probs=53.3

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE---E---ec------cccCceEEEe-----cCcEEEEcccCCCC
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH---P---ID------FENSKRLRLV-----DGTNLAIQDSRKTD   91 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~---~---~~------~~~~~~~~~~-----~~~~l~i~~~~~~d   91 (216)
                      ..|..+.+.+|++++|.|.+ ...+...+.||+...   .   +.      ....+++.+.     ...+|+|.+++.+|
T Consensus         3 q~~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            45667889999999999998 444677999998531   1   00      0123444433     23479999999999


Q ss_pred             CceEEEEEEcCC
Q psy573           92 DGRYQCVVKNVA  103 (216)
Q Consensus        92 ~g~y~C~~~~~~  103 (216)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.07  E-value=2.2e-09  Score=61.66  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=48.7

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCce---EEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKR---LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +.|+|....+.|.+.+.||+++..+.......   -.....+.|.|.....+|.+.|+|++.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            68999998889999999999999885321100   00112246999999999999999999997764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.07  E-value=3.3e-09  Score=61.84  Aligned_cols=64  Identities=22%  Similarity=0.398  Sum_probs=50.7

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      ....+..|+++.|.|...+. .+.+.|++++..+..+.........|.|..+..+|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            34578899999999998754 67999999999886543333344457799999999999999976

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.02  E-value=6.7e-09  Score=64.12  Aligned_cols=78  Identities=22%  Similarity=0.368  Sum_probs=51.3

Q ss_pred             cCCcEEEEeeCCCCCC-----------CCeeEEeeCCE----E-e---------ccccCceEEEe------cCcEEEEcc
Q psy573           38 AGDTALLECGPPRGHP-----------EPTLVWKKNGH----P-I---------DFENSKRLRLV------DGTNLAIQD   86 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-----------~~~~~W~~~~~----~-~---------~~~~~~~~~~~------~~~~l~i~~   86 (216)
                      .|++++|+|......+           .+.+.|++...    . +         .....+|+.+.      .+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999998732221           46899998421    1 1         11233455553      356899999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      ++.+|+|.|+|.+....... +..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence            99999999999998654332 444555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=99.00  E-value=4.7e-09  Score=63.52  Aligned_cols=77  Identities=21%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCE----Ee-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEE
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      |++++|.|..........+.|++...    .+           .....++....    .+.+|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            78999999863332334799998432    11           01112232221    2457999999999999999999


Q ss_pred             EcCCCCcccceeEEEE
Q psy573          100 KNVAGTRESTDAVLRV  115 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v  115 (216)
                      ...........+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            8655444455666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.98  E-value=8e-09  Score=63.67  Aligned_cols=78  Identities=26%  Similarity=0.325  Sum_probs=51.1

Q ss_pred             cCCcEEEEeeCCCC-----CCCCeeEEeeCCE----E---e-c--------cccCceEEEec----CcEEEEcccCCCCC
Q psy573           38 AGDTALLECGPPRG-----HPEPTLVWKKNGH----P---I-D--------FENSKRLRLVD----GTNLAIQDSRKTDD   92 (216)
Q Consensus        38 ~G~~~~l~C~~~~~-----~~~~~~~W~~~~~----~---~-~--------~~~~~~~~~~~----~~~l~i~~~~~~d~   92 (216)
                      .|++++|.|.+...     .....+.||+...    .   + .        ....+++.+..    +.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999986222     2345799998531    1   0 0        11223444421    35799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEe
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      |.|.|.+.+..+.. ...+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccce-EEEEEEEEE
Confidence            99999998765543 445556554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.98  E-value=5.9e-09  Score=62.26  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=53.1

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-eeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      |.+...+. ..+..|++++|.|... .+...+.|+++|........ .......+.|.++..+|+|.|+|...+.
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            44444443 4788999999999885 66778999999876443211 1123356999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.98  E-value=5.1e-09  Score=61.32  Aligned_cols=68  Identities=22%  Similarity=0.389  Sum_probs=47.7

Q ss_pred             EEEEEEeCC-CCCcEEEEeeCCccCCCCCeee--e-------cCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEE
Q psy573          136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV--L-------PSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLT  203 (216)
Q Consensus       136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~--~-------~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~  203 (216)
                      +.|.|.+.+ .|.+.+.|++++..+.......  .       ..+.|.+.....+|.|.|+|.+.|....  ...++.|.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            689999976 5888999999998765432111  1       1135777777778899999999998754  44454443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.98  E-value=8.3e-09  Score=64.39  Aligned_cols=76  Identities=22%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC---CCeeEEeeC----CEE--ec-----------cccCceEEEe-----cCcEEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKN----GHP--ID-----------FENSKRLRLV-----DGTNLAI   84 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~----~~~--~~-----------~~~~~~~~~~-----~~~~l~i   84 (216)
                      .+..+.+.+|++++|.|......+   ...+.||+.    +..  +.           ....+++...     .+.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            355678999999999998732222   346999852    111  10           0111233222     2457999


Q ss_pred             cccCCCCCceEEEEEEcCCCC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      .+++.+|+|.|+|.+.+....
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999976553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.96  E-value=1.1e-08  Score=63.04  Aligned_cols=75  Identities=17%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCC--E---Eec-------cccCceEEEec---CcEEEEcccCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRKT   90 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~--~---~~~-------~~~~~~~~~~~---~~~l~i~~~~~~   90 (216)
                      +...|....+.+|++++|.|.+ .+.. ...+.||+..  +   .+.       .....++....   ...|.|.+++.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~   81 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE   81 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence            4456777899999999999987 3333 5689999842  1   111       00112333322   236999999999


Q ss_pred             CCceEEEEEEcC
Q psy573           91 DDGRYQCVVKNV  102 (216)
Q Consensus        91 d~g~y~C~~~~~  102 (216)
                      |+|.|.|.+.+.
T Consensus        82 Dsg~Y~Ca~~~~   93 (106)
T cd04980          82 DAAVYYCQQYGT   93 (106)
T ss_pred             HCEEEEEEEeCC
Confidence            999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.96  E-value=7.8e-09  Score=62.78  Aligned_cols=76  Identities=21%  Similarity=0.377  Sum_probs=47.5

Q ss_pred             CcEEEEeeCCCCC--CCCeeEEeeCCEE----e-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEE
Q psy573           40 DTALLECGPPRGH--PEPTLVWKKNGHP----I-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        40 ~~~~l~C~~~~~~--~~~~~~W~~~~~~----~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      ++++|.|......  ....+.|++....    +           ......+..+.    .+.+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999873332  2447999995421    1           11123344333    246899999999999999999


Q ss_pred             EEcCCCCcccceeEEEE
Q psy573           99 VKNVAGTRESTDAVLRV  115 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v  115 (216)
                      +...........+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            87533222344445544

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.95  E-value=1.1e-08  Score=61.16  Aligned_cols=76  Identities=13%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             CcEEEEeeCCCCCCCCeeEEeeCC----EEe-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573           40 DTALLECGPPRGHPEPTLVWKKNG----HPI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~~~~W~~~~----~~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ++++|+|.........++.|.+..    ..+           .....+|....    .+.+|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            478999987433445589998742    111           11223454442    35689999999999999999987


Q ss_pred             cCCCCcccceeEEEE
Q psy573          101 NVAGTRESTDAVLRV  115 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v  115 (216)
                      .........+..|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            654443455566655

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.94  E-value=7.1e-09  Score=64.32  Aligned_cols=73  Identities=15%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Eec--------------cccCceEEEe----cCcEEEEccc
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PID--------------FENSKRLRLV----DGTNLAIQDS   87 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~~--------------~~~~~~~~~~----~~~~l~i~~~   87 (216)
                      ...|....+.+|++++|.|.+ .+ +...+.||+...  ...              .....++...    ....|.|.++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~   79 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA   79 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence            356777899999999999998 44 667899999532  110              0012333322    2347999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      +.+|+|.|+|.+...
T Consensus        80 ~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          80 EPEDSAVYLCASSLG   94 (110)
T ss_pred             ChhhCEEEEEEeeCC
Confidence            999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.93  E-value=1.8e-08  Score=60.20  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ..+.+.+|+.+.|.|.+ ...|.|. +.|.+++..+.............      +.|++..++.+|.|.|+|.+.|...
T Consensus        11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            35689999999999998 8888887 99999877553222212222211      4699999999999999999999876


Q ss_pred             CcccceeEEEE
Q psy573          105 TRESTDAVLRV  115 (216)
Q Consensus       105 ~~~~~~~~l~v  115 (216)
                      .. +.++.|.|
T Consensus        90 ~~-s~tF~l~v   99 (101)
T cd05860          90 SA-SVTFNVYV   99 (101)
T ss_pred             eE-EEEEEEEE
Confidence            54 44555554

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.93  E-value=1.8e-08  Score=60.44  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=51.3

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCC-------------------CCeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-------------------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-------------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      |++++|.|.........+.|+++......                   .+.....+..|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            78899999987766678999986533211                   12223345789999999999999999998876


Q ss_pred             cc-eEEEEEEE
Q psy573          194 GK-ISASATLT  203 (216)
Q Consensus       194 ~~-~~~~~~l~  203 (216)
                      +. ....+.|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            44 44455443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.92  E-value=2.5e-08  Score=61.65  Aligned_cols=79  Identities=25%  Similarity=0.373  Sum_probs=51.9

Q ss_pred             cCCcEEEEeeCCCCCC---------CCeeEEeeCC--EEe------------ccccCceEEEe------cCcEEEEcccC
Q psy573           38 AGDTALLECGPPRGHP---------EPTLVWKKNG--HPI------------DFENSKRLRLV------DGTNLAIQDSR   88 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~---------~~~~~W~~~~--~~~------------~~~~~~~~~~~------~~~~l~i~~~~   88 (216)
                      .|++++|+|......+         ...+.||+..  +..            .....+|+.+.      .+.+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999998732221         3679999852  111            11233455542      24579999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      .+|+|.|.|.+...... ....+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIED-EQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence            99999999999875433 24456666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.92  E-value=1.9e-08  Score=61.95  Aligned_cols=79  Identities=27%  Similarity=0.356  Sum_probs=51.0

Q ss_pred             cCCcEEEEeeCCCC-----CCCCeeEEeeCC-----E-Eec----------cccCceEEEe----cCcEEEEcccCCCCC
Q psy573           38 AGDTALLECGPPRG-----HPEPTLVWKKNG-----H-PID----------FENSKRLRLV----DGTNLAIQDSRKTDD   92 (216)
Q Consensus        38 ~G~~~~l~C~~~~~-----~~~~~~~W~~~~-----~-~~~----------~~~~~~~~~~----~~~~l~i~~~~~~d~   92 (216)
                      .|++++|+|.....     .....+.|++..     . .+.          .....++...    .+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            48999999987322     235689999862     1 110          0111222221    346899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEee
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      |.|.|.+.+..+. ....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~-~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIED-EQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCc-eEEEEEEEEEE
Confidence            9999999976443 24556666643

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.92  E-value=3.2e-09  Score=60.94  Aligned_cols=74  Identities=26%  Similarity=0.630  Sum_probs=47.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+...+.......+. +.|.|.+....+.+.+.|+ +.... ...........++.|.|.++..+|.|.|+|.+.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5555566555444444 9999998433337899999 11111 1111122223356799999999999999999875

...

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.92  E-value=1.8e-09  Score=62.01  Aligned_cols=72  Identities=29%  Similarity=0.488  Sum_probs=47.3

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCc-cCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|+.... ............+.|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4444444444343334 99999998887 88899991110 0011112222456799999999999999999986

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.91  E-value=9.7e-09  Score=60.58  Aligned_cols=75  Identities=20%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             CCcEEEEeeCCCCC--CCCeeEEeeCCEEecc---ccCceEE----EecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           39 GDTALLECGPPRGH--PEPTLVWKKNGHPIDF---ENSKRLR----LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        39 G~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~---~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      |+++.|.|.+ .+.  +...+.|...++....   ....+..    ....+.|.|.+++.+|+|.|+|.+.+..+.. ..
T Consensus         1 Ge~~~L~C~~-~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~   78 (86)
T cd05862           1 GEKLVLNCTA-RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KN   78 (86)
T ss_pred             CCcEEEEEEE-EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-cc
Confidence            7899999998 433  3458899887654311   0100100    1123579999999999999999999876643 33


Q ss_pred             eeEEEE
Q psy573          110 DAVLRV  115 (216)
Q Consensus       110 ~~~l~v  115 (216)
                      ...|.|
T Consensus        79 ~t~~~V   84 (86)
T cd05862          79 STIVIV   84 (86)
T ss_pred             cEEEEE
Confidence            445544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.90  E-value=1.8e-08  Score=59.02  Aligned_cols=64  Identities=23%  Similarity=0.439  Sum_probs=44.0

Q ss_pred             cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ++.|.|.+..+.|.+.+.|++++..+...........++      +.|.+.....+|.|.|+|.+.+...
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            368999984457888999999998774321111111111      3577887778888999999987653

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.90  E-value=4.4e-08  Score=60.49  Aligned_cols=75  Identities=20%  Similarity=0.443  Sum_probs=53.9

Q ss_pred             CCCcEEEEEEeCCCC------------CcEEEEeeCCc--cC--------------CC-CCeeee------cCCeEEEec
Q psy573          132 AGSIIVFECSVGGDA------------VLTVHWKRLGS--AM--------------PE-DRMSVL------PSRSLQLSD  176 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p------------~~~i~W~~~~~--~~--------------~~-~~~~~~------~~~~l~i~~  176 (216)
                      .|++++|.|......            .+.|.|+|...  ..              .. ++....      .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999975432            35899998421  00              00 122221      246799999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          177 VRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ++.+|+|.|.|.+.+........+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998888888888888764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.90  E-value=2.7e-08  Score=62.33  Aligned_cols=76  Identities=22%  Similarity=0.413  Sum_probs=50.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCC---CCCeeEEeeCCE------Ee-c-----------cccCceEEEec-----CcEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH---PEPTLVWKKNGH------PI-D-----------FENSKRLRLVD-----GTNLA   83 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~---~~~~~~W~~~~~------~~-~-----------~~~~~~~~~~~-----~~~l~   83 (216)
                      .|..+.+.+|++++|.|......   ....+.||+...      .+ .           .....|+.+..     +.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35667889999999999873222   225699986321      11 0           01112333322     35799


Q ss_pred             EcccCCCCCceEEEEEEcCCCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      |.+++.+|+|.|.|.+.+....
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999976543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.88  E-value=4.7e-08  Score=60.21  Aligned_cols=75  Identities=25%  Similarity=0.496  Sum_probs=53.9

Q ss_pred             CCCcEEEEEEeCCCC------CcEEEEeeCC--cc----C---CCC----------Ceee----ecCCeEEEecCCCCCC
Q psy573          132 AGSIIVFECSVGGDA------VLTVHWKRLG--SA----M---PED----------RMSV----LPSRSLQLSDVRLEDG  182 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p------~~~i~W~~~~--~~----~---~~~----------~~~~----~~~~~l~i~~~~~~d~  182 (216)
                      .|+++.|.|.....+      ...+.|++..  ..    +   ...          +...    .....|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999976542      4579999863  10    0   000          0000    0235799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEe
Q psy573          183 GEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.88  E-value=2.1e-08  Score=61.10  Aligned_cols=76  Identities=24%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             CCcEEEEeeCCCC--CCCCeeEEeeCCE--Ee---------c----cccCceEEEe------cCcEEEEcccCCCCCceE
Q psy573           39 GDTALLECGPPRG--HPEPTLVWKKNGH--PI---------D----FENSKRLRLV------DGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        39 G~~~~l~C~~~~~--~~~~~~~W~~~~~--~~---------~----~~~~~~~~~~------~~~~l~i~~~~~~d~g~y   95 (216)
                      |++++|+|.....  .....+.|++...  .+         .    ....+|+.+.      .+.+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999987322  1223688988541  11         0    0122344432      235799999999999999


Q ss_pred             EEEEEcCCCCcccceeEEEE
Q psy573           96 QCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        96 ~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +|.+.+..+. ....+.|.|
T Consensus        81 ~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEecCCcE-EEEEEEEEE
Confidence            9999976554 344445544

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.88  E-value=4.9e-08  Score=64.30  Aligned_cols=87  Identities=17%  Similarity=0.356  Sum_probs=60.4

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      .+.+.+|++++|.|....+...+++.|+|..+.+          .....+++...    .+..|.|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            4578999999999987435566789999964322          12223344421    346799999999999999999


Q ss_pred             EEcC-CCCcccceeEEEEeecc
Q psy573           99 VKNV-AGTRESTDAVLRVLVKP  119 (216)
Q Consensus        99 ~~~~-~~~~~~~~~~l~v~~~p  119 (216)
                      +..- .|...+....|.|....
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            8754 34245666777776543

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.87  E-value=1.7e-08  Score=60.63  Aligned_cols=80  Identities=13%  Similarity=0.241  Sum_probs=54.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCe--eEEeeCCEEeccccCceE---EEecCcEEEEcccCCCCCceEEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPT--LVWKKNGHPIDFENSKRL---RLVDGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      ..+.+.+....+.+|+.++|.|.+..+.|...  +.||+++..+........   ......+|.+.....+|...|+|.+
T Consensus         2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A   81 (100)
T cd05755           2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET   81 (100)
T ss_pred             ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence            34566666667899999999999977788876  699999988843211100   0111235776655455555799999


Q ss_pred             EcCCC
Q psy573          100 KNVAG  104 (216)
Q Consensus       100 ~~~~~  104 (216)
                      .+...
T Consensus        82 ~l~l~   86 (100)
T cd05755          82 ELDLR   86 (100)
T ss_pred             EeccC
Confidence            97654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.86  E-value=5.4e-08  Score=56.14  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe----cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      +.|.|.+..+.|.+.+.||++++.+...........    ..++|.|.....+|...|+|++.+..-........|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            689999978889999999999998843211100111    1236888777777777799999987643334455565543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.86  E-value=3.6e-08  Score=61.09  Aligned_cols=70  Identities=23%  Similarity=0.450  Sum_probs=52.0

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------------CCCCCeeee-----cCCeEEEecCCCCCCe
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVL-----PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------------~~~~~~~~~-----~~~~l~i~~~~~~d~g  183 (216)
                      .+....+.+|+++.|.|.+.+.+...+.|++....               ....+....     ....|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            45667889999999999998777788999985321               011222222     1246999999999999


Q ss_pred             EEEEEEEcCC
Q psy573          184 EYVCEAENAV  193 (216)
Q Consensus       184 ~y~C~~~n~~  193 (216)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.86  E-value=6.4e-08  Score=57.95  Aligned_cols=65  Identities=20%  Similarity=0.386  Sum_probs=44.7

Q ss_pred             CcEEEEeeCCCCCCCCeeEEeeCCE----Ee-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573           40 DTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~~~~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ++++|.|.........++.|.+...    .+           .....+|+...    .+.+|.|.|++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4789999874444556889988421    11           12233455443    25789999999999999999997


Q ss_pred             cCCC
Q psy573          101 NVAG  104 (216)
Q Consensus       101 ~~~~  104 (216)
                      ....
T Consensus        81 t~P~   84 (96)
T cd05889          81 TYPQ   84 (96)
T ss_pred             eCCC
Confidence            6543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.85  E-value=1.3e-08  Score=62.62  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             EEecCCcEEEEeeCCCCC-CCCeeEEeeCCE-----Eec----------cccCceEEEe-----cCcEEEEcccCCCCCc
Q psy573           35 RVAAGDTALLECGPPRGH-PEPTLVWKKNGH-----PID----------FENSKRLRLV-----DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~-----~~~----------~~~~~~~~~~-----~~~~l~i~~~~~~d~g   93 (216)
                      .+.+|++++|.|.+ ... +...+.||+...     .+.          .....++...     ...+|+|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            57799999999988 443 567899998532     110          1122333332     2347999999999999


Q ss_pred             eEEEEEEcCCC
Q psy573           94 RYQCVVKNVAG  104 (216)
Q Consensus        94 ~y~C~~~~~~~  104 (216)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.84  E-value=7.1e-08  Score=59.43  Aligned_cols=75  Identities=27%  Similarity=0.500  Sum_probs=54.1

Q ss_pred             CCCcEEEEEEeCCCC------CcEEEEeeCCcc--------CC-----------CCCeeee----cCCeEEEecCCCCCC
Q psy573          132 AGSIIVFECSVGGDA------VLTVHWKRLGSA--------MP-----------EDRMSVL----PSRSLQLSDVRLEDG  182 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p------~~~i~W~~~~~~--------~~-----------~~~~~~~----~~~~l~i~~~~~~d~  182 (216)
                      .|+++.|.|.....|      ...+.|++....        +.           ..+....    ....|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478999999875542      356999985411        00           0122221    124699999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEe
Q psy573          183 GEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999998888888888864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.84  E-value=1.4e-08  Score=63.35  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=50.4

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Eec------------cccCceEEEec-----CcEEEEcc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PID------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~~------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      ..|..+.+.+|+++.|.|..........+.|++...     .+.            ....++..+..     +.+|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            345667899999999999983133556899998321     110            11122222221     23699999


Q ss_pred             cCCCCCceEEEEEEcC
Q psy573           87 SRKTDDGRYQCVVKNV  102 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~  102 (216)
                      ++.+|+|.|.|.+...
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.84  E-value=4.3e-08  Score=61.44  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---e-------ccccCceEEEe-----cCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---I-------DFENSKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      +...+..+.+.+|++++|.|..........+.||+..  ..   +       .....+++...     ...+|.|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            3456677889999999999987333345679999842  11   1       01223455443     124799999999


Q ss_pred             CCCceEEEEEEcC
Q psy573           90 TDDGRYQCVVKNV  102 (216)
Q Consensus        90 ~d~g~y~C~~~~~  102 (216)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~Y~C~~~~~   94 (116)
T cd07706          82 EDSAKYFCALSTL   94 (116)
T ss_pred             HHCEEEEEEEECC
Confidence            9999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.82  E-value=5.7e-08  Score=59.05  Aligned_cols=76  Identities=20%  Similarity=0.379  Sum_probs=47.1

Q ss_pred             CcEEEEeeCCCCC--CCCeeEEeeCCE-----Ee-----------ccccCceEEEe-----cCcEEEEcccCCCCCceEE
Q psy573           40 DTALLECGPPRGH--PEPTLVWKKNGH-----PI-----------DFENSKRLRLV-----DGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        40 ~~~~l~C~~~~~~--~~~~~~W~~~~~-----~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~   96 (216)
                      .+++|+|......  ...++.|++...     .+           .....++..+.     .+.+|+|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999873222  134899998421     11           01112344443     2458999999999999999


Q ss_pred             EEEEcCCCCcccceeEEEE
Q psy573           97 CVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        97 C~~~~~~~~~~~~~~~l~v  115 (216)
                      |.+.+.........+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            9998743332355555554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.81  E-value=8.6e-08  Score=58.39  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=49.0

Q ss_pred             CCcEEEEEEeCCCC---CcEEEEeeCCc-----------cCC------C-CCeeee------cCCeEEEecCCCCCCeEE
Q psy573          133 GSIIVFECSVGGDA---VLTVHWKRLGS-----------AMP------E-DRMSVL------PSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       133 g~~~~l~C~~~~~p---~~~i~W~~~~~-----------~~~------~-~~~~~~------~~~~l~i~~~~~~d~g~y  185 (216)
                      |+++.|.|...+..   ...+.|++...           ...      . .+....      ...+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999975322   23578877542           110      0 122211      124699999999999999


Q ss_pred             EEEEEcCCcceEEEEEEEE
Q psy573          186 VCEAENAVGKISASATLTV  204 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l~v  204 (216)
                      +|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.81  E-value=8.6e-08  Score=59.47  Aligned_cols=70  Identities=23%  Similarity=0.441  Sum_probs=51.0

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-----------------CCCCeeee----cCCeEEEecCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-----------------PEDRMSVL----PSRSLQLSDVRL  179 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-----------------~~~~~~~~----~~~~l~i~~~~~  179 (216)
                      ..|....+.+|+++.|.|.+.+ +.+.+.|+|...  .+                 ...+....    ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3456778999999999999977 667899998542  11                 01122221    235699999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy573          180 EDGGEYVCEAENAV  193 (216)
Q Consensus       180 ~d~g~y~C~~~n~~  193 (216)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.80  E-value=4.2e-08  Score=58.87  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ...+.+|++|+|.|... . ....+.|||++........ ..........+.|.+++.+|+|.|+|....
T Consensus         9 ~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            45688999999999762 2 4567999998765321110 000001124689999999999999999764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.80  E-value=6.4e-08  Score=59.55  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             CCcEEEEeeCCCC------CCCCeeEEeeCC-----EE------------eccccCceEEEec------CcEEEEcccCC
Q psy573           39 GDTALLECGPPRG------HPEPTLVWKKNG-----HP------------IDFENSKRLRLVD------GTNLAIQDSRK   89 (216)
Q Consensus        39 G~~~~l~C~~~~~------~~~~~~~W~~~~-----~~------------~~~~~~~~~~~~~------~~~l~i~~~~~   89 (216)
                      |++++|+|.....      ...+.+.|.+..     ..            ......+|..+..      +.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            7899999985211      124689998741     11            1224455666543      45899999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +|+|.|+|.+...... ....+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~-~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGIND-EQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            9999999999975432 3455666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.80  E-value=2.1e-07  Score=55.61  Aligned_cols=67  Identities=22%  Similarity=0.464  Sum_probs=49.3

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------CCCCCeeeec----CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVLP----SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+..+.+|+++.|.|.+.+.....+.|++-+..         ....++....    ..+|.|.+++.+|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            557888999999999998876666777765532         2233443322    235999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.76  E-value=1.9e-07  Score=56.62  Aligned_cols=71  Identities=34%  Similarity=0.665  Sum_probs=49.5

Q ss_pred             CcEEEEEEeCCCC---CcEEEEeeCCcc---------------CC---CCCeeee----cCCeEEEecCCCCCCeEEEEE
Q psy573          134 SIIVFECSVGGDA---VLTVHWKRLGSA---------------MP---EDRMSVL----PSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       134 ~~~~l~C~~~~~p---~~~i~W~~~~~~---------------~~---~~~~~~~----~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      +++.|.|.....+   ...+.|+|....               ..   ..+....    ....|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999986543   446999986431               00   0111111    245799999999999999999


Q ss_pred             EEc-CCcceEEEEEEEE
Q psy573          189 AEN-AVGKISASATLTV  204 (216)
Q Consensus       189 ~~n-~~~~~~~~~~l~v  204 (216)
                      +.. ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6688888888776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.75  E-value=1.9e-07  Score=56.39  Aligned_cols=74  Identities=18%  Similarity=0.349  Sum_probs=47.5

Q ss_pred             cEEEEeeCCCCCCC---CeeEEeeCC--E--Ee-----------ccccCceEEEec----CcEEEEcccCCCCCceEEEE
Q psy573           41 TALLECGPPRGHPE---PTLVWKKNG--H--PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        41 ~~~l~C~~~~~~~~---~~~~W~~~~--~--~~-----------~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~   98 (216)
                      .++|.|......+.   .++.|.+..  .  .+           .....+|+....    +++|.|.+++.+|+|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68899987322221   268998731  1  11           112334444432    47899999999999999999


Q ss_pred             EEc-CCCCcccceeEEEE
Q psy573           99 VKN-VAGTRESTDAVLRV  115 (216)
Q Consensus        99 ~~~-~~~~~~~~~~~l~v  115 (216)
                      +.+ +.|. ....+.|.|
T Consensus        82 v~t~P~g~-~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGN-RESQLNLTV   98 (99)
T ss_pred             EEeCCCCC-eEEEEEEEE
Confidence            998 4443 455566655

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.75  E-value=2.3e-07  Score=57.75  Aligned_cols=71  Identities=17%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             CCceeEeCCCcEEEEEEeCCC----CCcEEEEeeC---------------CccCC--C----CCeeee-----cCCeEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGD----AVLTVHWKRL---------------GSAMP--E----DRMSVL-----PSRSLQL  174 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~---------------~~~~~--~----~~~~~~-----~~~~l~i  174 (216)
                      +....+..|+.+.|.|.....    +...+.|.+.               +....  .    ++....     .+.++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            355678899999999998543    3457999442               22211  0    122211     2357999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcc
Q psy573          175 SDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+++.+|.|.|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999998764

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.75  E-value=1.1e-07  Score=59.62  Aligned_cols=72  Identities=15%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             ecccceEEecCCcEEEEeeCCCC--CCCCeeEEeeCC--EE---e-c-----------cccCceEEEe-----cCcEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--HP---I-D-----------FENSKRLRLV-----DGTNLAI   84 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~--~~---~-~-----------~~~~~~~~~~-----~~~~l~i   84 (216)
                      ..|..+.+.+|++++|.|.+ .+  .+...+.||+..  ..   + .           .....++...     ....|.|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   81 (116)
T cd04982           3 QPQLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI   81 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence            35667788999999999987 34  466789999942  11   1 0           0112344432     1247999


Q ss_pred             cccCCCCCceEEEEEEc
Q psy573           85 QDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~  101 (216)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          82 QNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EECCHHHCEEEEEEEec
Confidence            99999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.74  E-value=2.3e-07  Score=57.33  Aligned_cols=78  Identities=22%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             CCcEEEEeeCCCC----------CCCCeeEEeeC-----CE-----Ee----------ccccCceEEEe------cCcEE
Q psy573           39 GDTALLECGPPRG----------HPEPTLVWKKN-----GH-----PI----------DFENSKRLRLV------DGTNL   82 (216)
Q Consensus        39 G~~~~l~C~~~~~----------~~~~~~~W~~~-----~~-----~~----------~~~~~~~~~~~------~~~~l   82 (216)
                      |.+++|+|.....          .....|.|++-     +.     .+          .....+|..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            6789999987311          12348999874     11     11          12344555553      35689


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      .|.+++.+|+|.|.|.+....... ...+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCccc-EEEEEEEEEE
Confidence            999999999999999998765443 4556666653

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.73  E-value=2.9e-07  Score=56.94  Aligned_cols=75  Identities=23%  Similarity=0.416  Sum_probs=53.3

Q ss_pred             CCCcEEEEEEeCCCC----------CcEEEEeeCC--ccC--------------CC-CCeeee------cCCeEEEecCC
Q psy573          132 AGSIIVFECSVGGDA----------VLTVHWKRLG--SAM--------------PE-DRMSVL------PSRSLQLSDVR  178 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p----------~~~i~W~~~~--~~~--------------~~-~~~~~~------~~~~l~i~~~~  178 (216)
                      .|+++.|.|.....+          ...+.|++..  ...              .. ++....      ....|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999985443          2569999852  110              00 122221      22569999999


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          179 LEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .+|+|.|.|.+..........+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777788888888765

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.73  E-value=1e-07  Score=57.83  Aligned_cols=67  Identities=18%  Similarity=0.330  Sum_probs=45.0

Q ss_pred             EEecCCcEEEEeeCCCCC--CCCeeEEeeCCE--E---ec-------cccCceEEEec---CcEEEEcccCCCCCceEEE
Q psy573           35 RVAAGDTALLECGPPRGH--PEPTLVWKKNGH--P---ID-------FENSKRLRLVD---GTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~~--~---~~-------~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C   97 (216)
                      .+.+|++++|.|.+ ...  ....+.||+...  .   +.       .....++....   ...|+|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            46799999999987 333  456799998432  1   10       01122333322   2369999999999999999


Q ss_pred             EEEcC
Q psy573           98 VVKNV  102 (216)
Q Consensus        98 ~~~~~  102 (216)
                      .+.+.
T Consensus        81 ~~~~~   85 (98)
T cd04984          81 QVWDS   85 (98)
T ss_pred             EEccC
Confidence            98653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.71  E-value=1.4e-07  Score=57.27  Aligned_cols=70  Identities=24%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-----e------ccccCceEEEec-----CcEEEEcccCCCCCceEEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----I------DFENSKRLRLVD-----GTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-----~------~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C   97 (216)
                      +.+.+|++++|.|..........+.||+....     +      .....+++.+..     ...|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46789999999998733335567899985321     1      012233444431     2479999999999999999


Q ss_pred             EEEcCC
Q psy573           98 VVKNVA  103 (216)
Q Consensus        98 ~~~~~~  103 (216)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.64  E-value=2.4e-07  Score=55.94  Aligned_cols=74  Identities=23%  Similarity=0.408  Sum_probs=51.0

Q ss_pred             eCCCcEEEEEEeCC-CCCcEEEEeeCCccCC--------------C----CCeeeec-CCeEEEecCCCCCCeEEEEEEE
Q psy573          131 SAGSIIVFECSVGG-DAVLTVHWKRLGSAMP--------------E----DRMSVLP-SRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       131 ~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~--------------~----~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      ..|++|+|.|.... .....+.|++....+.              .    .+..... +..|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999998765 4455799997532110              0    1122222 3679999999999999999999


Q ss_pred             cCCcc-eEEEEEEEE
Q psy573          191 NAVGK-ISASATLTV  204 (216)
Q Consensus       191 n~~~~-~~~~~~l~v  204 (216)
                      +..|. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            88765 455565554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.62  E-value=5.1e-07  Score=55.55  Aligned_cols=37  Identities=32%  Similarity=0.501  Sum_probs=32.6

Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .+|.|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus        72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            4799999999999999999999777788888888864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.62  E-value=4.1e-07  Score=57.22  Aligned_cols=73  Identities=26%  Similarity=0.352  Sum_probs=49.1

Q ss_pred             cccceEEecCCcEEEEeeCCCCC-----CCCeeEEeeCCEE------ec---------cccCceEEEe-----cCcEEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH-----PEPTLVWKKNGHP------ID---------FENSKRLRLV-----DGTNLAI   84 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~-----~~~~~~W~~~~~~------~~---------~~~~~~~~~~-----~~~~l~i   84 (216)
                      .|..+.+.+|++|+|+|......     ....+.||+....      +.         ....+|+...     .+.+|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46678899999999999762111     1346899985311      10         1122354442     1247999


Q ss_pred             cccCCCCCceEEEEEEcC
Q psy573           85 QDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~  102 (216)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.61  E-value=1.6e-06  Score=53.66  Aligned_cols=38  Identities=26%  Similarity=0.507  Sum_probs=33.7

Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      +.+|.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            35799999999999999999999988888888888864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.60  E-value=1.6e-06  Score=50.08  Aligned_cols=76  Identities=14%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             eeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      ..+..|++++|.|.....+.|  .+.|..-+...-  ........+|.+..+...|+|.++|.+....-.....+.+.|.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            467789999999999665444  899986443311  1112345789999999999999999998665555556666554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.60  E-value=3.4e-07  Score=56.25  Aligned_cols=66  Identities=26%  Similarity=0.469  Sum_probs=47.4

Q ss_pred             eEeCCCcEEEEEEeCCC-CCcEEEEeeCCcc--C----------------CCCCeeee-----cCCeEEEecCCCCCCeE
Q psy573          129 TVSAGSIIVFECSVGGD-AVLTVHWKRLGSA--M----------------PEDRMSVL-----PSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~--~----------------~~~~~~~~-----~~~~l~i~~~~~~d~g~  184 (216)
                      .+.+|+++.|.|..... +...+.|++....  .                ...+....     ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999765 6678999985431  0                01122111     12369999999999999


Q ss_pred             EEEEEEcCCc
Q psy573          185 YVCEAENAVG  194 (216)
Q Consensus       185 y~C~~~n~~~  194 (216)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.58  E-value=1.2e-06  Score=50.66  Aligned_cols=70  Identities=19%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             EEEEEEeCC-CCCcEEEEeeCCccCCCCCee--ee-----cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573          136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMS--VL-----PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ  205 (216)
Q Consensus       136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~--~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~  205 (216)
                      +.|.|.+.+ .|.+.|.|++++..+......  ..     ..+.|.+..-..+|+..|+|.+.|..-. ...+..|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            679999855 588899999999888654221  11     1245777655566666999999997643 4445555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.58  E-value=7e-07  Score=53.57  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe----eeecCCeEEEecCCCCCCeEEEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SVLPSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      ...+..|++++|.|.... ....+.|+|++........    .......+.|..++.+|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            457889999999998754 4457999998875432110    01112468999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.57  E-value=1.2e-06  Score=50.54  Aligned_cols=64  Identities=19%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             eEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           34 QRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      ..+..|++++|+|..+.+ .|.+.+.|...++..-     .....+..+|.+.++...|+|.++|.+...
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            367899999999998433 3455999988655431     111134568999999999999999999764

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.57  E-value=8.6e-07  Score=54.57  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCc--cC-----------C--CCCeeeec---CCeEEEecCCCCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGS--AM-----------P--EDRMSVLP---SRSLQLSDVRLEDG  182 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~--~~-----------~--~~~~~~~~---~~~l~i~~~~~~d~  182 (216)
                      ...|....+.+|+++.|.|.+.+.. ...+.|++...  ..           .  ..+.....   ...|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3456677889999999999987654 56799997531  10           0  01222211   13599999999999


Q ss_pred             eEEEEEEEcC
Q psy573          183 GEYVCEAENA  192 (216)
Q Consensus       183 g~y~C~~~n~  192 (216)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.56  E-value=1.7e-06  Score=52.53  Aligned_cols=70  Identities=24%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             cEEEEEEeCCCC---CcEEEEeeCCcc-----C-----------CC---CCeeee-----cCCeEEEecCCCCCCeEEEE
Q psy573          135 IIVFECSVGGDA---VLTVHWKRLGSA-----M-----------PE---DRMSVL-----PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       135 ~~~l~C~~~~~p---~~~i~W~~~~~~-----~-----------~~---~~~~~~-----~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ++.|.|......   ...+.|++....     +           ..   ++....     .+..|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578999875433   336889884211     0           00   122221     23579999999999999999


Q ss_pred             EEEc-CCcceEEEEEEEE
Q psy573          188 EAEN-AVGKISASATLTV  204 (216)
Q Consensus       188 ~~~n-~~~~~~~~~~l~v  204 (216)
                      .+.+ +.|+.+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 6677777777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.56  E-value=1.5e-06  Score=56.30  Aligned_cols=90  Identities=14%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEecc-----ccC--ceEEEecC-----
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDF-----ENS--KRLRLVDG-----   79 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~-----~~~--~~~~~~~~-----   79 (216)
                      +..++|.|.. +|.+.+.+......+|+.+.|.|.+....|. .++.|++++.....     ...  .......+     
T Consensus        28 ~~~~~l~v~~-~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~  106 (139)
T cd05771          28 QQIIQLSVSE-PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL  106 (139)
T ss_pred             eeEEEEEEec-CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEE
Confidence            4556677754 5777777766666689999999999444564 58999998754211     000  01111222     


Q ss_pred             -cEEEEcccCCCCCceEEEEEEcCC
Q psy573           80 -TNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        80 -~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                       +.|.+.....++.+.|.|.+....
T Consensus       107 ~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771         107 SSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEEEecCCccCCCCEEEEEEEcCC
Confidence             246666555555678999998654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.55  E-value=5.9e-07  Score=55.89  Aligned_cols=81  Identities=23%  Similarity=0.449  Sum_probs=54.2

Q ss_pred             CCCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCcc-----CC---------------CCCeeeec-----CCeEEEecC
Q psy573          124 GPKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSA-----MP---------------EDRMSVLP-----SRSLQLSDV  177 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~-----~~---------------~~~~~~~~-----~~~l~i~~~  177 (216)
                      .+....+.+|+++.|.|... ......+.|++....     +.               ..+.....     ..+|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            34667888999999999998 455668999984331     00               01111111     135999999


Q ss_pred             CCCCCeEEEEEEEcC-CcceEEEEEEEE
Q psy573          178 RLEDGGEYVCEAENA-VGKISASATLTV  204 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~-~~~~~~~~~l~v  204 (216)
                      +.+|+|.|.|.+... .......+.|.|
T Consensus        87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999999876 233444455543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.55  E-value=1.6e-06  Score=50.68  Aligned_cols=63  Identities=17%  Similarity=0.360  Sum_probs=42.3

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-------cEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +.|.|.+..+.|...+.|+++|..+..... ......+       +.|.+.....+|...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999977778899999999988743221 1111212       23555455566667899999986643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.54  E-value=6.5e-07  Score=55.18  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=43.7

Q ss_pred             EEecCCcEEEEeeCCCCCCCCeeEEeeCCEE---------ec-c----------ccCceEEE--ec---CcEEEEcccCC
Q psy573           35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHP---------ID-F----------ENSKRLRL--VD---GTNLAIQDSRK   89 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~---------~~-~----------~~~~~~~~--~~---~~~l~i~~~~~   89 (216)
                      .+.+|++++|.|.+........+.||+....         +. .          ....++..  ..   ...|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            5789999999998732233457999984221         00 0          00123332  11   13599999999


Q ss_pred             CCCceEEEEEEc
Q psy573           90 TDDGRYQCVVKN  101 (216)
Q Consensus        90 ~d~g~y~C~~~~  101 (216)
                      +|+|.|.|....
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.53  E-value=3.4e-07  Score=55.17  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=46.5

Q ss_pred             eCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe--e--eecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          131 SAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM--S--VLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~--~--~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..|+.+.|.|.+.+. | ...+.|++++..+.....  .  ...+      +.|.+......+.+.|+|.|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999887 5 368999999987754432  1  1122      23555555566899999999998764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.53  E-value=1.3e-06  Score=54.56  Aligned_cols=71  Identities=21%  Similarity=0.481  Sum_probs=47.6

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC----CcEEEEeeC---Ccc---C----------CC----CCeeee-----cCCeEEEe
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRL---GSA---M----------PE----DRMSVL-----PSRSLQLS  175 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~---~~~---~----------~~----~~~~~~-----~~~~l~i~  175 (216)
                      +....+..|+++.|.|.....+    ...+.|++.   +..   +          ..    .+....     .+..|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4556888999999999974332    246999752   111   0          00    111111     23469999


Q ss_pred             cCCCCCCeEEEEEEEcCCcc
Q psy573          176 DVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       176 ~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +++.+|+|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.52  E-value=2.8e-06  Score=51.34  Aligned_cols=35  Identities=37%  Similarity=0.648  Sum_probs=31.4

Q ss_pred             CeEEEecCCCCCCeEEEEEEEc-CCcceEEEEEEEE
Q psy573          170 RSLQLSDVRLEDGGEYVCEAEN-AVGKISASATLTV  204 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n-~~~~~~~~~~l~v  204 (216)
                      .+|.|.+++.+|+|.|.|.+.+ +.|+.+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            6799999999999999999999 6788888888876

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.51  E-value=1.3e-06  Score=52.54  Aligned_cols=75  Identities=16%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCC-CCCcE--EEEeeCCccCCCCCeee------ecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGG-DAVLT--VHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+.+....+.+|+.++|.|.+.+ .|.+.  |.|++++..+.......      ....++.+..-+.+|...|+|.+.+.
T Consensus         5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~   84 (100)
T cd05755           5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD   84 (100)
T ss_pred             EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence            33444556789999999999965 56665  79999998875432221      12245666544444455999999887


Q ss_pred             Ccce
Q psy573          193 VGKI  196 (216)
Q Consensus       193 ~~~~  196 (216)
                      ....
T Consensus        85 l~~~   88 (100)
T cd05755          85 LRPE   88 (100)
T ss_pred             cCcc
Confidence            6553

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.51  E-value=1.4e-06  Score=50.91  Aligned_cols=60  Identities=18%  Similarity=0.410  Sum_probs=40.6

Q ss_pred             EEEEEEeCCC-CCcEEEEeeCCccCCCCCeeee--cC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          136 IVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVL--PS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       136 ~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~--~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +.|.|.+.+. |.+.+.|++++..+........  .+      +.|.+.....++++.|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999654 8889999999987753321111  11      23444444555677999999988654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.50  E-value=2.1e-06  Score=50.15  Aligned_cols=60  Identities=18%  Similarity=0.392  Sum_probs=40.9

Q ss_pred             EEEEEEeCCC-CCcEEEEeeCCccCCCCCeee--ecC-------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          136 IVFECSVGGD-AVLTVHWKRLGSAMPEDRMSV--LPS-------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       136 ~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +.|.|.+.+. |.+.|+|++++..+.......  ...       +.|.+.....++...|+|.+.|....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6799999665 888999999998775432111  111       23444444555677999999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.49  E-value=3.9e-06  Score=55.52  Aligned_cols=80  Identities=19%  Similarity=0.375  Sum_probs=58.1

Q ss_pred             eeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCC-------------CCCeeee----cCCeEEEecCCCCCCeEEEEEE
Q psy573          128 TTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMP-------------EDRMSVL----PSRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      ..+.+|+++.|.|... +...+.+.|.|....+.             .++....    ....|.|.+++.+|+|.|.|.+
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4778999999999974 55677899998643221             0122211    3467999999999999999998


Q ss_pred             Ec-CCc-ceEEEEEEEEEec
Q psy573          190 EN-AVG-KISASATLTVQSK  207 (216)
Q Consensus       190 ~n-~~~-~~~~~~~l~v~~~  207 (216)
                      .. +.| +.+..+-|.|...
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EecCCCCCceeEEEEEEEch
Confidence            64 456 6777888888754

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.48  E-value=3.8e-06  Score=52.58  Aligned_cols=71  Identities=18%  Similarity=0.494  Sum_probs=47.7

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC----CcEEEEeeCCcc------C-----------CCC----Ceeee-----cCCeEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRLGSA------M-----------PED----RMSVL-----PSRSLQL  174 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~------~-----------~~~----~~~~~-----~~~~l~i  174 (216)
                      |....+..|+.+.|.|......    ...+.|++....      +           ...    +....     .+..|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4566788999999999875432    246999763210      0           011    11111     1246999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcc
Q psy573          175 SDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+++.+|+|.|.|.+.|....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999987653

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.48  E-value=1.2e-06  Score=54.89  Aligned_cols=69  Identities=19%  Similarity=0.411  Sum_probs=49.0

Q ss_pred             CCCceeEeCCCcEEEEEEeCC--CCCcEEEEeeCC--ccC------------------CCCCeeee-----cCCeEEEec
Q psy573          124 GPKDTTVSAGSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVL-----PSRSLQLSD  176 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~--~~~------------------~~~~~~~~-----~~~~l~i~~  176 (216)
                      .+....+.+|+++.|.|.+.+  .+.+.+.|++..  ..+                  ...+....     ....|.|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            345667889999999999876  567789999852  111                  01222222     124699999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy573          177 VRLEDGGEYVCEAENA  192 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~  192 (216)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          84 LEKEDSATYYCAYWES   99 (116)
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999998643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.48  E-value=3.2e-06  Score=51.10  Aligned_cols=72  Identities=32%  Similarity=0.511  Sum_probs=48.8

Q ss_pred             CCcEEEEEEeCCCCC-cEEEEeeCCccCC------------------CCCeee----ecCCeEEEecCCCCCCeEEEEEE
Q psy573          133 GSIIVFECSVGGDAV-LTVHWKRLGSAMP------------------EDRMSV----LPSRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       133 g~~~~l~C~~~~~p~-~~i~W~~~~~~~~------------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      |++++|.|....... -.+.|++.....+                  ..+...    .....|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            688999998654433 3599988532100                  001111    02356999999999999999998


Q ss_pred             E-cCCcceEEEEEEEE
Q psy573          190 E-NAVGKISASATLTV  204 (216)
Q Consensus       190 ~-n~~~~~~~~~~l~v  204 (216)
                      . .+.|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 55677777887776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.48  E-value=2.1e-06  Score=50.16  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +.|.|.+..+.|.+.+.||++++.+.... .......++      .|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            68999996667889999999998874221 111111222      3555455555667899999986543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.45  E-value=8.5e-06  Score=48.81  Aligned_cols=70  Identities=23%  Similarity=0.517  Sum_probs=48.2

Q ss_pred             cEEEEEEeCCCC-CcEEEEeeCCcc----CC--------------CCCeeee----cCCeEEEecCCCCCCeEEEEEEE-
Q psy573          135 IIVFECSVGGDA-VLTVHWKRLGSA----MP--------------EDRMSVL----PSRSLQLSDVRLEDGGEYVCEAE-  190 (216)
Q Consensus       135 ~~~l~C~~~~~p-~~~i~W~~~~~~----~~--------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~-  190 (216)
                      ++.|.|.....+ ...+.|.|....    +.              .++....    .+.+|.|.+++.+|+|.|+|.+. 
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            578999975433 346899874210    00              0122221    24679999999999999999975 


Q ss_pred             cCCcceEEEEEEEE
Q psy573          191 NAVGKISASATLTV  204 (216)
Q Consensus       191 n~~~~~~~~~~l~v  204 (216)
                      .+.|+...++.|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            56788888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.45  E-value=3e-06  Score=53.09  Aligned_cols=72  Identities=15%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCCE---E--e------------ccccCceEEEe--c-C--cEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGH---P--I------------DFENSKRLRLV--D-G--TNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~---~--~------------~~~~~~~~~~~--~-~--~~l~i~~   86 (216)
                      .|....+.+|++++|.|...... ....+.||+...   +  +            .....+++...  . .  ..|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            46677899999999999762221 245689998421   1  1            00112344332  1 1  2699999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|+|.|.|....
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG3515|consensus

Probab=98.43  E-value=1.2e-06  Score=69.98  Aligned_cols=192  Identities=17%  Similarity=0.184  Sum_probs=117.4

Q ss_pred             eeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-----CcEEEEcccCCCC
Q psy573           17 KLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQDSRKTD   91 (216)
Q Consensus        17 ~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d   91 (216)
                      -+.++..+....+.+....+..|....+.|....+.|...+.||++................     -..+.+......|
T Consensus       293 ~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~  372 (741)
T KOG3515|consen  293 ITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQD  372 (741)
T ss_pred             eeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhc
Confidence            34444444555566666668899999999987677788899999965543211110000011     1246667778889


Q ss_pred             CceEEEEEEcCCCCcc-cceeEEEEeecceEEeC-CCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCC---Cee
Q psy573           92 DGRYQCVVKNVAGTRE-STDAVLRVLVKPYIIRG-PKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPED---RMS  165 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~-~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~---~~~  165 (216)
                      .|.|+|.+.+...... +..+.+.+..+|.+... .......+++.....-.+.+.| .+++.|.+.+..+...   ...
T Consensus       373 ~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~  452 (741)
T KOG3515|consen  373 GGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVR  452 (741)
T ss_pred             CceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEE
Confidence            9999999988664332 23344555555544322 2222333444444443443554 5679999887665322   112


Q ss_pred             eecC-CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          166 VLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       166 ~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      .... ......++...|.|.|.|.+.|..|.....+.+.+...|
T Consensus       453 v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp  496 (741)
T KOG3515|consen  453 VGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP  496 (741)
T ss_pred             eeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence            2222 233356688899999999999999988877776666544

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.40  E-value=2.5e-06  Score=49.80  Aligned_cols=63  Identities=19%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ++|.|.+..+.|...+.|+++|..+............+      ..|.+......+...|+|.+.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            68999997778889999999999873221111111111      2466665556666779999987653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.34  E-value=4.4e-06  Score=50.59  Aligned_cols=64  Identities=27%  Similarity=0.442  Sum_probs=44.2

Q ss_pred             eEeCCCcEEEEEEeCCC--CCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEE
Q psy573          129 TVSAGSIIVFECSVGGD--AVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      .+.+|+++.|.|.....  ....+.|++...  .+.             ..+....   ....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998654  455699987432  110             1122221   123599999999999999999


Q ss_pred             EEcC
Q psy573          189 AENA  192 (216)
Q Consensus       189 ~~n~  192 (216)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.32  E-value=1.7e-06  Score=52.06  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573           37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ..|+.+.|.|.+....| ...+.|+++|..+..... .......++      .|.+......|.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            46899999999843335 468999999988743322 111112222      366666666699999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.29  E-value=5.5e-06  Score=51.13  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=45.1

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecC-cE------EEEcccCCCCCc-eEEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG-TN------LAIQDSRKTDDG-RYQCV   98 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~g-~y~C~   98 (216)
                      .+.+.......|+.++|.|.+....|. ..+.|++||+.+..... ......+ ++      |.+.. ...|.| .|.|.
T Consensus        10 ~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~   87 (111)
T cd05772          10 VVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCE   87 (111)
T ss_pred             EeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEE
Confidence            344344455678899999999555664 69999999998743211 1111122 12      33333 344444 49999


Q ss_pred             EEcCC
Q psy573           99 VKNVA  103 (216)
Q Consensus        99 ~~~~~  103 (216)
                      +....
T Consensus        88 V~H~~   92 (111)
T cd05772          88 VQHRT   92 (111)
T ss_pred             EEeCC
Confidence            98754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.29  E-value=8.7e-06  Score=47.52  Aligned_cols=60  Identities=15%  Similarity=0.359  Sum_probs=41.0

Q ss_pred             EEEEEEeCC-CCCcEEEEeeCCccCCCCCeee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +.|.|.+.+ .|...++|++++..+.......         ...+.|.+..-..++...|+|.|.|....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            579999976 5678899999998875432111         11134555555566677999999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.27  E-value=7.7e-06  Score=51.20  Aligned_cols=70  Identities=26%  Similarity=0.463  Sum_probs=48.7

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCc--cC-------------CCCCeeee-----cCCeEEEecCCCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGS--AM-------------PEDRMSVL-----PSRSLQLSDVRLED  181 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~--~~-------------~~~~~~~~-----~~~~l~i~~~~~~d  181 (216)
                      ..+....+..|+++.|.|..... ....+.|++...  .+             ..++....     ....|.|.+++.+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            44566788999999999998653 456799998421  10             01222222     12469999999999


Q ss_pred             CeEEEEEEEcC
Q psy573          182 GGEYVCEAENA  192 (216)
Q Consensus       182 ~g~y~C~~~n~  192 (216)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.25  E-value=4.8e-06  Score=49.47  Aligned_cols=64  Identities=22%  Similarity=0.386  Sum_probs=42.5

Q ss_pred             CCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          133 GSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       133 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      |+.+.+.|.+ .++|.+.|.|+.++..+.......         ...+.|.+..-..++...++|.+.|.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            6799999976 667899999999987762111110         111346665544456779999999987554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.24  E-value=1.5e-05  Score=48.29  Aligned_cols=65  Identities=26%  Similarity=0.383  Sum_probs=45.4

Q ss_pred             eEeCCCcEEEEEEeCC-CCCcEEEEeeCCccC--------------CCCCeeee-----cCCeEEEecCCCCCCeEEEEE
Q psy573          129 TVSAGSIIVFECSVGG-DAVLTVHWKRLGSAM--------------PEDRMSVL-----PSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~--------------~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      .+.+|+++.|.|.... .....+.|++.....              ...+....     ....|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5678999999999764 345678999864211              01222222     113699999999999999999


Q ss_pred             EEcCC
Q psy573          189 AENAV  193 (216)
Q Consensus       189 ~~n~~  193 (216)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.22  E-value=6e-06  Score=50.56  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=43.1

Q ss_pred             EEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-------ec-ccc------------CceEEEe---cCcEEEEcccCCCC
Q psy573           35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHP-------ID-FEN------------SKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-------~~-~~~------------~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      .+.+|++++|.|.+ .......+.||+....       +. ...            ..++...   ....|+|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence            36789999999987 3334457999984321       10 000            1223221   12369999999999


Q ss_pred             CceEEEEEE
Q psy573           92 DGRYQCVVK  100 (216)
Q Consensus        92 ~g~y~C~~~  100 (216)
                      +|.|.|.+.
T Consensus        81 sgtY~Ca~~   89 (104)
T cd05720          81 EGYYFCSVA   89 (104)
T ss_pred             CEEEEEEEc
Confidence            999999975

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.22  E-value=1.6e-05  Score=49.12  Aligned_cols=67  Identities=18%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             eEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCeee--ecC-------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          129 TVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMSV--LPS-------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ....|+.++|.|.+.++ | ..++.|++|+..+.......  ..+       +.|.+..-..++...|+|.+.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence            34567889999999876 4 35899999998865321111  111       23444433332234699999997644

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00096 Ig Immunoglobulin domain

Probab=98.21  E-value=1.3e-05  Score=44.68  Aligned_cols=58  Identities=31%  Similarity=0.643  Sum_probs=43.5

Q ss_pred             EEEEEEeCCCCCcEEEEeeCCccCCCCCe--------eeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          136 IVFECSVGGDAVLTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +.|.|.+.+.+...+.|++++........        .......|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            36899998877788999998765543221        12233568999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=98.21  E-value=7.8e-06  Score=45.65  Aligned_cols=61  Identities=34%  Similarity=0.609  Sum_probs=43.3

Q ss_pred             EEEEeeCCCCCCCCeeEEeeCCEEeccccC-----ceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +.|.|.+ .+.+...+.|++++........     ..........|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4689998 4467789999998876532221     11112233579999999999999999998754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.13  E-value=2.2e-05  Score=42.71  Aligned_cols=52  Identities=23%  Similarity=0.516  Sum_probs=36.2

Q ss_pred             eCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          131 SAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ..|.+|+|+|+....   .+.|.+++..+...      +..+.+.+-. +++|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence            468899999997532   29999998665542      2334444444 8899999999543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.12  E-value=6.5e-06  Score=48.88  Aligned_cols=66  Identities=23%  Similarity=0.490  Sum_probs=42.8

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |+.+.|.|.+..+.|.+.+.|+.++..+............+      +.|.+.....++...++|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            67999999887788999999999987761111111111111      2466665555566679999998653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.10  E-value=0.00011  Score=44.13  Aligned_cols=69  Identities=20%  Similarity=0.403  Sum_probs=44.1

Q ss_pred             CcEEEEEEeCCC-CCcEEEEeeCCcc----C-----------C---CCCeeee----cCCeEEEecCCCCCCeEEEEEEE
Q psy573          134 SIIVFECSVGGD-AVLTVHWKRLGSA----M-----------P---EDRMSVL----PSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       134 ~~~~l~C~~~~~-p~~~i~W~~~~~~----~-----------~---~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +++.|.|..... ....+.|.|....    +           .   .++....    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            467888987432 3446889874320    0           0   0122221    24679999999999999999986


Q ss_pred             c-CCcceEEEEEE
Q psy573          191 N-AVGKISASATL  202 (216)
Q Consensus       191 n-~~~~~~~~~~l  202 (216)
                      . +.|+..+.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 46776666543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.09  E-value=2.3e-05  Score=46.90  Aligned_cols=67  Identities=15%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe----eeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM----SVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~----~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .++.+.|.|.+.+. | ...+.|.+++..+.....    ....+      +.|.+..-...+...|+|.|.+.......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~   91 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED   91 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence            45668999999886 4 357899999887532211    11112      23444444444667999999998765443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.08  E-value=3e-05  Score=46.41  Aligned_cols=65  Identities=17%  Similarity=0.301  Sum_probs=38.8

Q ss_pred             CCcEEEEeeCCCCCCC-CeeEEeeCCEEeccc-cCceEEEecCcEEE---EcccCCCCCceEEEEEEcCC
Q psy573           39 GDTALLECGPPRGHPE-PTLVWKKNGHPIDFE-NSKRLRLVDGTNLA---IQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~-~~~~~~~~~~~~l~---i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |+.++|.|.+....|. ..+.|+++++..... .........++.+.   ...+...+.+.|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            7889999998433454 489999998633211 11122222333222   23344457788999998654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.08  E-value=3.4e-05  Score=46.16  Aligned_cols=63  Identities=24%  Similarity=0.331  Sum_probs=39.0

Q ss_pred             CCcEEEEEEeCCCCCc--EEEEeeCCccCCCC----CeeeecCCeEE---EecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVLPSRSLQ---LSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ++.+.|.|.+.+..++  .+.|.+++......    ......++++.   .-.+...+.+.|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            6789999999986433  79999998532211    11111222222   1233445788999999887643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.06  E-value=3.8e-05  Score=47.27  Aligned_cols=63  Identities=22%  Similarity=0.470  Sum_probs=42.8

Q ss_pred             eEeCCCcEEEEEEeCCC-CCcEEEEeeCCccC--C---------------------CCCeee--ec---CCeEEEecCCC
Q psy573          129 TVSAGSIIVFECSVGGD-AVLTVHWKRLGSAM--P---------------------EDRMSV--LP---SRSLQLSDVRL  179 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~--~---------------------~~~~~~--~~---~~~l~i~~~~~  179 (216)
                      .+.+|++++|.|..... ....+.|++.....  .                     ..+...  ..   ...|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998653 34579999753210  0                     012211  11   12599999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.06  E-value=3.6e-05  Score=44.03  Aligned_cols=59  Identities=24%  Similarity=0.382  Sum_probs=38.3

Q ss_pred             EEEEEEeCCC-CC-cEEEEeeCCccCCCCCee----eecC------CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          136 IVFECSVGGD-AV-LTVHWKRLGSAMPEDRMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       136 ~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +.|.|.+.+. |. ..+.|++++..+..+...    ...+      +.|.+.....++...|+|.|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            6899999887 43 589999999864322111    1112      3355555456677899999987653

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.05  E-value=1.4e-05  Score=48.44  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=42.8

Q ss_pred             eEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          129 TVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ....++.+.|.|.+.+. | ...+.|+++|..+.....    ....++      .|.+..-...+...|+|.|.+....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~   91 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS   91 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence            34456789999999875 4 457999999987743211    111122      3444444444567999999987643

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02633 hypothetical protein; Provisional

Probab=98.04  E-value=3.3e-05  Score=41.21  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=38.8

Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      ....|.|-++..+|+|.|.|.+.|..-....++.|.|.......++
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~~~ip   61 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIESNID   61 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccccccc
Confidence            3456888999999999999999998888999999999877665554

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.03  E-value=3.8e-05  Score=45.76  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=41.3

Q ss_pred             ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEc---ccCCCCCceEEEEEEcCC
Q psy573           37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~y~C~~~~~~  103 (216)
                      ..|...+|.|.+....| ...+.|+++|..+............++++++.   .+...+...|.|.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            45777899999844344 45889999999875211112222334443332   234566778999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.02  E-value=2e-05  Score=45.70  Aligned_cols=58  Identities=22%  Similarity=0.467  Sum_probs=36.4

Q ss_pred             cEEEEeeCCCCCCC--CeeEEeeCCE-----Eecc-----------ccCceEEEecC-----cEEEEcccCCCCCceEEE
Q psy573           41 TALLECGPPRGHPE--PTLVWKKNGH-----PIDF-----------ENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        41 ~~~l~C~~~~~~~~--~~~~W~~~~~-----~~~~-----------~~~~~~~~~~~-----~~l~i~~~~~~d~g~y~C   97 (216)
                      ++.|.|.+ .....  ..+.||+...     .+..           ....++.....     .+|.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKA-SGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEE-eccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence            47899987 33222  3788988431     1100           12334443322     469999999999999999


Q ss_pred             EE
Q psy573           98 VV   99 (216)
Q Consensus        98 ~~   99 (216)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            74

>KOG1480|consensus

Probab=98.02  E-value=5.9e-06  Score=65.46  Aligned_cols=168  Identities=23%  Similarity=0.425  Sum_probs=98.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeE------EeeCCEEeccccCceEEEe--cCcEEEEcccCCCCCc---
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV------WKKNGHPIDFENSKRLRLV--DGTNLAIQDSRKTDDG---   93 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~------W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g---   93 (216)
                      +.|...|++..+..|.++.|.|.+ .  +.+++.      |.++.........+.....  ......|.....++.|   
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a-~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKA-N--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             ceeeecCCccceecCCCccceecC-C--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence            567889999999999999999975 2  333443      4444332211111100000  0112334333333332   


Q ss_pred             eEEEEEE--cCCCCcccceeEEEEeec-ceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCC-Ceeeec
Q psy573           94 RYQCVVK--NVAGTRESTDAVLRVLVK-PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSVLP  168 (216)
Q Consensus        94 ~y~C~~~--~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~-~~~~~~  168 (216)
                      .|.|+-.  ...|...+....+.+.+. -.+...+....+..+....+.|.. .+.|...+.|++++..+... +.....
T Consensus       102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~  181 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS  181 (909)
T ss_pred             ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh
Confidence            3777643  222321111111111111 123344555677778888888875 67788889999998766542 233334


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...+++..++..|.|+|+|.+.|-.+.
T Consensus       182 d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  182 DHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             cCCccccchhhhhcccceeeeehhhcc
Confidence            567999999999999999999998775

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.01  E-value=1.3e-05  Score=48.64  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             cceEecccc-eEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceE
Q psy573           25 EEFRVQPKS-QRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRY   95 (216)
Q Consensus        25 ~~~~~~~~~-~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y   95 (216)
                      |.+.+.+.. .....++.++|.|.+....| ...+.|+++|+.+.... ........++      .|.+......+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            344443333 34557788999999855455 56899999999873221 1111112233      344544444445679


Q ss_pred             EEEEEcCC
Q psy573           96 QCVVKNVA  103 (216)
Q Consensus        96 ~C~~~~~~  103 (216)
                      .|.+....
T Consensus        82 sC~V~H~~   89 (100)
T cd07699          82 TCEVTHEG   89 (100)
T ss_pred             EEEEEecC
Confidence            99998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.99  E-value=3.2e-05  Score=46.47  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CCceeEeCCCcEEEEEEeCCC-CC--cEEEEeeCCccCCCC---CeeeecCC------eEEEecCCCCCCeEEEEEEEcC
Q psy573          125 PKDTTVSAGSIIVFECSVGGD-AV--LTVHWKRLGSAMPED---RMSVLPSR------SLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      |....+..|+.+.|.|.+.+. .+  ..+.|.++++.....   ......++      .|.+..-...+...|+|.|.+.
T Consensus         6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~   85 (96)
T cd07696           6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP   85 (96)
T ss_pred             cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence            344455668899999999888 33  368999987432110   01111222      3444433333456899999987


Q ss_pred             Ccc
Q psy573          193 VGK  195 (216)
Q Consensus       193 ~~~  195 (216)
                      ...
T Consensus        86 ~l~   88 (96)
T cd07696          86 DLP   88 (96)
T ss_pred             CCC
Confidence            644

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.98  E-value=0.00013  Score=43.61  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++...|.|.+.++.+  ..+.|.++|..+..+..    ....++      .|.+.   ..+...|+|.|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l~   86 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGLE   86 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCCC
Confidence            3566799999988643  46899999987654211    111222      24433   34566999999987543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.95  E-value=2.4e-05  Score=47.57  Aligned_cols=66  Identities=18%  Similarity=0.305  Sum_probs=41.1

Q ss_pred             EeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCe-------------eeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          130 VSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRM-------------SVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~-------------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +..+..++|.|.+.+..+.  .+.|.+++..+.....             .+...+.|.+..-...+...|+|.|.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            3456789999999886443  5899999887643210             111112344433333456689999998754


Q ss_pred             c
Q psy573          195 K  195 (216)
Q Consensus       195 ~  195 (216)
                      .
T Consensus        93 ~   93 (102)
T cd05768          93 P   93 (102)
T ss_pred             C
Confidence            3

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.94  E-value=0.0002  Score=42.68  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=41.5

Q ss_pred             eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe----eeecCCeEEE---ecCCCCCCeEEEEEEEcCCcc
Q psy573          131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM----SVLPSRSLQL---SDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~----~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..|....|.|.+.++.  ...+.|.+||..+. +..    ....+.++.+   -.+.+.+...|+|.+.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~   85 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS   85 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence            3466679999998864  34689999998875 311    1122333332   134566777999999986543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.93  E-value=5.3e-05  Score=46.38  Aligned_cols=63  Identities=21%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCcc----C------CC-C------------Ceeee---cCCeEEEecCCCCCC
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSA----M------PE-D------------RMSVL---PSRSLQLSDVRLEDG  182 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~----~------~~-~------------~~~~~---~~~~l~i~~~~~~d~  182 (216)
                      .+.+|++++|.|.........+.|++....    +      .. .            +....   ....|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            367899999999986554556999975421    1      00 0            01110   113599999999999


Q ss_pred             eEEEEEEEc
Q psy573          183 GEYVCEAEN  191 (216)
Q Consensus       183 g~y~C~~~n  191 (216)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.92  E-value=0.00026  Score=44.52  Aligned_cols=69  Identities=28%  Similarity=0.385  Sum_probs=45.8

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCC------CcEEEEeeCCccC---------C---------CCCeeee-----cCCeEEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDA------VLTVHWKRLGSAM---------P---------EDRMSVL-----PSRSLQL  174 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~~~~~---------~---------~~~~~~~-----~~~~l~i  174 (216)
                      .|....+..|+.+.|.|......      ...+.|++.....         .         .++....     ....|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            35567888999999999763221      2458999853210         0         0122221     1246999


Q ss_pred             ecCCCCCCeEEEEEEEcC
Q psy573          175 SDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~  192 (216)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.92  E-value=0.0001  Score=44.15  Aligned_cols=61  Identities=11%  Similarity=0.276  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCC
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .++.+.|.|.+.++.+  ..+.|.+++.. ..+..    ....++      .|.+..........|+|.|.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999988643  46899999986 32211    111122      34444333333568999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.91  E-value=0.00024  Score=42.56  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             eCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCC----CeeeecCCeEEE---ecCCCCCCeEEEEEEEcCCcce
Q psy573          131 SAGSIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVLPSRSLQL---SDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ..|+.+.|.|.+.+..++  ++.|++++..+...    ......++++.+   -.+...+...|+|.+.+.....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~   86 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQE   86 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCC
Confidence            357889999999886433  68999999876442    111112222221   1233445669999999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.90  E-value=9.4e-05  Score=42.30  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=38.2

Q ss_pred             cEEEEeeCCCCCCC-CeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           41 TALLECGPPRGHPE-PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        41 ~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .++|.|.+....|. ..+.|+++|+.+.... ........++      .|.+.....++...|+|.+....
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899998444555 6999999998642211 1111111222      35555555566678999997643

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.90  E-value=0.00015  Score=43.37  Aligned_cols=67  Identities=24%  Similarity=0.291  Sum_probs=40.5

Q ss_pred             ecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccc-cCceEEEecCcEEEE---cccCCCCCceEEEEEEcCC
Q psy573           37 AAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLAI---QDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~l~i---~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..|+.++|.|.+....|.. .+.|+++|..+... .........++++.+   ..+...+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            4689999999995545544 88999999986432 111122222322221   1233445667999998654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.89  E-value=7e-05  Score=46.47  Aligned_cols=71  Identities=14%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             eEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----e-------eecCCeEEEecCCCCC-CeEEEEEEEcCCc
Q psy573          129 TVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----S-------VLPSRSLQLSDVRLED-GGEYVCEAENAVG  194 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~-------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~  194 (216)
                      ....++.+.|.|.+.++.+  ..+.|.+|+..+.....    .       +...+.|.+......+ ...|+|.|.+...
T Consensus        14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~   93 (115)
T cd05769          14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG   93 (115)
T ss_pred             HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence            3345677999999988643  37899999977653211    1       1112335544443333 5699999999876


Q ss_pred             ceEEE
Q psy573          195 KISAS  199 (216)
Q Consensus       195 ~~~~~  199 (216)
                      .....
T Consensus        94 ~~~~~   98 (115)
T cd05769          94 TDTDK   98 (115)
T ss_pred             cccee
Confidence            65543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG1480|consensus

Probab=97.87  E-value=3.8e-06  Score=66.51  Aligned_cols=105  Identities=31%  Similarity=0.550  Sum_probs=79.8

Q ss_pred             hhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCC
Q psy573           10 KEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK   89 (216)
Q Consensus        10 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   89 (216)
                      ...+..+++++.+....+...|.-..|..+..+.+.|+.+.+.|...+.|++++..++.  ...........+.+..+..
T Consensus       115 ~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arl  192 (909)
T KOG1480|consen  115 TVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARL  192 (909)
T ss_pred             cchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhh
Confidence            44556666666666667777788888999999999999888888899999999988755  3333334456799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      .|.|.|+|++.+..+........+.+.
T Consensus       193 sd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  193 SDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhcccceeeeehhhccccccceEEEEE
Confidence            999999999998766544444444443

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.84  E-value=9.4e-05  Score=40.27  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=34.8

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      -..|..|+|+|+. .   ...+.|++++..+..         .+..+.+.+-. ++.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~-~---~~~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPL-S---GDDIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCC-C---CCCceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence            3579999999964 2   123899999865522         11234444444 889999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.81  E-value=0.0002  Score=44.84  Aligned_cols=67  Identities=22%  Similarity=0.419  Sum_probs=45.3

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCc--cC---------------C---CCCeeee--c-C--CeEEEecC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGS--AM---------------P---EDRMSVL--P-S--RSLQLSDV  177 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~~---------------~---~~~~~~~--~-~--~~l~i~~~  177 (216)
                      +....+.+|++++|.|......  ...+.|++...  .+               .   .++....  . .  ..|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4566888999999999875432  45689987432  11               0   1122221  1 1  25999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy573          178 RLEDGGEYVCEAEN  191 (216)
Q Consensus       178 ~~~d~g~y~C~~~n  191 (216)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.79  E-value=0.00012  Score=43.52  Aligned_cols=68  Identities=13%  Similarity=0.141  Sum_probs=42.4

Q ss_pred             EEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCce-E----EEecCcEEEEcccCCCCCc-eEEEEEEcCC
Q psy573           35 RVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKR-L----RLVDGTNLAIQDSRKTDDG-RYQCVVKNVA  103 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~-~----~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~  103 (216)
                      .+.+|..+++.|.+....|.  ..+.|+++...+....... .    .......+++... .+|.| .|.|.+....
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            45899999999999655555  5789998776553221110 0    0011234666654 66666 7999987543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03376 BARF1; Provisional

Probab=97.77  E-value=0.00051  Score=45.75  Aligned_cols=67  Identities=15%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             ceeEeCCCcEEEEEEeCCC---CCcEEEEeeCCc----cC-----------CCC---Ceee---ecCCeEEEecCCCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGD---AVLTVHWKRLGS----AM-----------PED---RMSV---LPSRSLQLSDVRLEDG  182 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~----~~-----------~~~---~~~~---~~~~~l~i~~~~~~d~  182 (216)
                      ......|+.+.|.|.....   +...|.|+|.+.    .+           +.+   +...   ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            4567789999999987522   455799999532    00           000   1111   1224689999999999


Q ss_pred             eEEEEEEEcCC
Q psy573          183 GEYVCEAENAV  193 (216)
Q Consensus       183 g~y~C~~~n~~  193 (216)
                      |+|+|.+.-..
T Consensus       100 GtY~C~fQkge  110 (221)
T PHA03376        100 GNYLCRMKLGE  110 (221)
T ss_pred             ceEEEEEEcCC
Confidence            99999997544

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.77  E-value=0.00013  Score=43.84  Aligned_cols=71  Identities=17%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCccCCC--C-----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSAMPE--D-----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~~~--~-----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.......+..+.|.|.+.+..   ...+.|.+++..-..  .     ...+...+.|.+..-....+..|+|.|.+...
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3333455678899999998754   346999998864100  0     01111123344443333445689999998765


Q ss_pred             c
Q psy573          195 K  195 (216)
Q Consensus       195 ~  195 (216)
                      .
T Consensus        91 ~   91 (99)
T cd04986          91 D   91 (99)
T ss_pred             c
Confidence            3

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.75  E-value=0.0002  Score=42.81  Aligned_cols=64  Identities=22%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..|+..+|.|.+....| ...+.|.++|..+.... ........++      .|.+.   .++...|.|.+....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            34677899999844445 46889999998863211 1111222232      24333   345568999998643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.74  E-value=0.0004  Score=41.63  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=39.7

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .....+.|.+..+.|.++|.|+++....   .........+      +.|.+.....+|...|+|.+.+...
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~---~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGE---AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCc---ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            3457789998788999999999971111   0011111111      2466666666666679999988653

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.73  E-value=0.00017  Score=43.17  Aligned_cols=67  Identities=18%  Similarity=0.301  Sum_probs=39.7

Q ss_pred             ecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccc-cCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           37 AAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFE-NSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~-~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..++.++|.|.+....|. ..+.|+++|..+... .........++      .|.+......+...|.|.+....
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            355679999998444554 689999999876221 11111112222      34444433345567999998654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.70  E-value=0.00038  Score=38.22  Aligned_cols=49  Identities=20%  Similarity=0.495  Sum_probs=36.1

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ...+.|.|.+.    .+|.|++ |..+...     ...+|.+.....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence            35689999752    5699999 5443321     156788888888889999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.69  E-value=0.00064  Score=40.74  Aligned_cols=66  Identities=18%  Similarity=0.315  Sum_probs=39.7

Q ss_pred             CcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeec------CCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          134 SIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLP------SRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       134 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      ....+.|.+ .+.|.+.|.|+++.............      .+.|.+.....+++..|+|.+.|........
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~   88 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR   88 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            456789998 67899999999972111101111111      1345555444445569999999987554333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.64  E-value=0.00049  Score=41.17  Aligned_cols=70  Identities=14%  Similarity=0.204  Sum_probs=41.8

Q ss_pred             CcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          134 SIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       134 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      ....+.|.+ .+.|.+.|.|+++.............+      +.|.+..-..+|+..|+|.+.|........+.++
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            457889987 567899999998732111111111111      3455544444456699999999876655544443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.60  E-value=0.00056  Score=40.94  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=45.8

Q ss_pred             eEEecCCcEEE-EeeCCCCCCCCeeEEeeCCEEec-----cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           34 QRVAAGDTALL-ECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        34 ~~~~~G~~~~l-~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..+.+|+.+.+ .|.+..+.|.+++.|+.+.....     ....+.+...  +.|.+.....+|.-.+.|.+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCCcEEEEEEeCcc
Confidence            56778999999 99988899999999998633221     0111111111  356666666667777999998754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.60  E-value=0.00037  Score=40.68  Aligned_cols=61  Identities=25%  Similarity=0.444  Sum_probs=40.9

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee---e-ecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---V-LPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~---~-~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++.+.|.|.+.++ | ...+.|.+++..+......   . ..++      .|.+.   ..+...|+|.|.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            47889999999775 4 3369999999876543211   1 1222      34444   55666999999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.59  E-value=0.00027  Score=40.81  Aligned_cols=20  Identities=45%  Similarity=0.861  Sum_probs=17.6

Q ss_pred             CeEEEecCCCCCCeEEEEEE
Q psy573          170 RSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~  189 (216)
                      ..|.|.+++.+|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            35999999999999999964

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.58  E-value=0.00023  Score=42.77  Aligned_cols=70  Identities=11%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             eEEecCCcEEEEeeCCCC-CC-CCeeEEeeCCEEeccccCceEEEecCcE------EEEcccCCCCCceEEEEEEcCC
Q psy573           34 QRVAAGDTALLECGPPRG-HP-EPTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~-~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..+..|+.++|.|.+... .| ...+.|.++++..............+++      |.+..-...+.-.|.|.+....
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            345678999999998544 33 4588999987533111111111222333      3333322223346999998754

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.55  E-value=0.00044  Score=42.09  Aligned_cols=69  Identities=20%  Similarity=0.310  Sum_probs=39.9

Q ss_pred             EEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCc--eEEEe--cCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           35 RVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSK--RLRLV--DGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~--~~~~~--~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..|..++|.|.+....|. ..+.|+++|+.+......  .....  .++      .|.+..-...+...|.|.+....
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            34467899999998444453 478999999876422110  01111  122      34443333334457999998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=97.51  E-value=0.005  Score=41.72  Aligned_cols=119  Identities=13%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe-cc----------------ccCceE--EEe-cCcEEEEcccCCCCC
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DF----------------ENSKRL--RLV-DGTNLAIQDSRKTDD   92 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~-~~----------------~~~~~~--~~~-~~~~l~i~~~~~~d~   92 (216)
                      ++....|+.|.|.|..+.+.......|.++.... ..                .....+  ... ..++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            4566789999999997655555678898854322 10                011111  112 245899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeC-CCcEEEEEEeCCCCCcEEEEeeCCc
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA-GSIIVFECSVGGDAVLTVHWKRLGS  157 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~i~W~~~~~  157 (216)
                      |-|+|++....+.......-|.|+....+.      .+.+ .....+.|-+.....+-..|.-+|-
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            999999987654433333344442221111      1112 3445678887444322227876654

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.50  E-value=0.00046  Score=41.36  Aligned_cols=34  Identities=12%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             eEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEec
Q psy573           34 QRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPID   67 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~   67 (216)
                      ..+..+..++|.|.+....| ...+.|.++|..+.
T Consensus        11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            34445678999999844344 45889999998763

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.49  E-value=0.0015  Score=39.14  Aligned_cols=68  Identities=15%  Similarity=0.266  Sum_probs=42.3

Q ss_pred             eeEeCCCcEEE-EEEe-CCCCCcEEEEeeCCccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          128 TTVSAGSIIVF-ECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       128 ~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..+.+|+.+.+ .|.+ .+.|.+.|.|+.+.............+      +.+.+...+..|+-.++|.+.+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            35567788888 8886 677899999997632221111111112      34555545555666999999998654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.46  E-value=0.002  Score=38.58  Aligned_cols=62  Identities=10%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           40 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ..+.+.|.+..+.|...+.|+++....   .........+      +.|.+.....+|...|.|.+.+...
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            457899998788999999999972211   0011111111      2466666666666679999998653

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.44  E-value=0.00084  Score=36.89  Aligned_cols=49  Identities=24%  Similarity=0.469  Sum_probs=36.0

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .+.|.|+|.+     ...+.|++ |..+...        .+.+|.+.....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~-----~tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG-----ATNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC-----CCcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence            4579999965     24699999 5544211        145688888889999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.44  E-value=0.00097  Score=40.00  Aligned_cols=63  Identities=13%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             eEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe---------eeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          129 TVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ....++.+.|.|.+.+..+  ..+.|.++|..+..+..         .+...+.|.+..-.  ....|+|.|.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            3344677999999988643  36899999987543211         11111223333221  2446999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.40  E-value=0.00063  Score=42.25  Aligned_cols=71  Identities=20%  Similarity=0.357  Sum_probs=42.3

Q ss_pred             eEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccC-ceEEEecC-c------EEEEcccCCCC-CceEEEEEEcCC
Q psy573           34 QRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDG-T------NLAIQDSRKTD-DGRYQCVVKNVA  103 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~-~~~~~~~~-~------~l~i~~~~~~d-~g~y~C~~~~~~  103 (216)
                      ..+.+++.++|.|.+....|. ..+.|++++..+..... .......+ +      .|.+......+ ...|.|.+....
T Consensus        13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence            334467889999998555565 58999999987643211 01111111 2      35555444333 456999998654


Q ss_pred             C
Q psy573          104 G  104 (216)
Q Consensus       104 ~  104 (216)
                      .
T Consensus        93 ~   93 (115)
T cd05769          93 G   93 (115)
T ss_pred             C
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.40  E-value=0.0018  Score=39.86  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=44.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CC-CeeEEeeCCE-Ee------------ccccCceEEEec-----CcEEEEcccC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PE-PTLVWKKNGH-PI------------DFENSKRLRLVD-----GTNLAIQDSR   88 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~-~~~~W~~~~~-~~------------~~~~~~~~~~~~-----~~~l~i~~~~   88 (216)
                      ++....+..|..++|.|.+ .+.  .. ..+.|+|... .+            ......++....     ...|+|.+++
T Consensus         4 ~~~~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           4 QQSPVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            4455678899999999987 332  22 4788998421 11            001122222111     1269999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|.+.|.|..+
T Consensus        83 a~DTa~Y~Ca~e   94 (115)
T cd05721          83 ANQTDIYFCKIE   94 (115)
T ss_pred             HHHCeEEEEEee
Confidence            999999999864

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.38  E-value=0.0012  Score=38.47  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             cCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEE-ecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRL-VDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~-~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..++|.|.+....|. ..+.|++++..+.......... ..++      .|.+.   ..+...|.|.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            38899999998444554 4899999999874322222122 2333      24444   455557999998654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA02633 hypothetical protein; Provisional

Probab=97.27  E-value=0.001  Score=35.65  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           78 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        78 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      .+..|.|.++..+|+|.|.|.+.+..-.. ..++.|.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEee
Confidence            34579999999999999999998765433 2344555543

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.27  E-value=0.0057  Score=46.75  Aligned_cols=131  Identities=17%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             EEEEcccCCCCCceEEEEEEcCCC--CcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeC
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRL  155 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~  155 (216)
                      .|.|.+++..++|.|.=.+.+...  ......+++.+...|.+.+.+  .-+.+|+...-.|.+..+.++   .+.|++|
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            499999999999999866543221  122345667777788665543  467889999999999665433   5999999


Q ss_pred             CccCCCCC----eeeecC------CeEEEecCCCCC--CeEEEEEEEcCCcceE-----EEEEEEEEecceeeec
Q psy573          156 GSAMPEDR----MSVLPS------RSLQLSDVRLED--GGEYVCEAENAVGKIS-----ASATLTVQSKYLKVIH  213 (216)
Q Consensus       156 ~~~~~~~~----~~~~~~------~~l~i~~~~~~d--~g~y~C~~~n~~~~~~-----~~~~l~v~~~p~~~~~  213 (216)
                      ++.+....    .....+      ++|.+......|  .-..+|.+....+..+     .+..-.|-.+|.+.++
T Consensus       368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~  442 (566)
T PHA03269        368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE  442 (566)
T ss_pred             CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE
Confidence            88776321    111122      234442222222  3467999876554421     2233334445555544

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.16  E-value=0.00051  Score=43.21  Aligned_cols=70  Identities=19%  Similarity=0.325  Sum_probs=37.8

Q ss_pred             EEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCc--eEE--------E----ecCcEEEEcccCCCCCceEE
Q psy573           35 RVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSK--RLR--------L----VDGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~--~~~--------~----~~~~~l~i~~~~~~d~g~y~   96 (216)
                      ...-++.|.|+|.+..-    .+...+.|..+++.+-.....  ...        +    .++.+|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            34568999999988321    133468999998876321111  110        0    12345777765444 79999


Q ss_pred             EEEEcCCCC
Q psy573           97 CVVKNVAGT  105 (216)
Q Consensus        97 C~~~~~~~~  105 (216)
                      |++......
T Consensus       102 CeVt~~~~e  110 (130)
T PF08204_consen  102 CEVTELSRE  110 (130)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEecCCC
Confidence            999876543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.13  E-value=0.0031  Score=37.82  Aligned_cols=65  Identities=18%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .++.++|.|.+....| ...+.|+++|+. ..... .......++      .|.+....-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999844444 458899999997 22210 011111122      24444332222456999998654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.11  E-value=0.0015  Score=39.31  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=38.8

Q ss_pred             eEEecCCcEEEEeeCCCCC-C-CCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573           34 QRVAAGDTALLECGPPRGH-P-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~-~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .....+..++|.|.+.... | ...+.|.+++.. ...... .....++      .|.+..-.-.....|+|.+.....
T Consensus        14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3455788999999984434 4 358999999865 111111 1111122      344442222223459999987543

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.11  E-value=0.02  Score=43.29  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=73.0

Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCC
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLG  156 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~  156 (216)
                      .|.|..++...+|.|+=.+.+..+.. ....+++....+|.+.+.+  .-+..|+...-.|.+..+.++   .+.|++|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            39999999999999998877655432 2334566667778766544  357789999999999665433   59999999


Q ss_pred             ccCCCCCe---e--eecC-----CeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          157 SAMPEDRM---S--VLPS-----RSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       157 ~~~~~~~~---~--~~~~-----~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      ..+...+.   .  ...+     +++++....... .-+.+|.+....+.
T Consensus       261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~  310 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS  310 (466)
T ss_pred             ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence            87642111   1  1111     234443332222 23899998765544

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.11  E-value=0.071  Score=40.48  Aligned_cols=158  Identities=15%  Similarity=0.254  Sum_probs=80.8

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccC--ceEEEecCc-----EEEEcccCCCCC-
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENS--KRLRLVDGT-----NLAIQDSRKTDD-   92 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~--~~~~~~~~~-----~l~i~~~~~~d~-   92 (216)
                      .+|.+.+.+  ..+.+|++..-.|.+....|.  ..+.||.|+..+.....  .......++     ++++.+...... 
T Consensus       220 r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~P  297 (466)
T PHA03270        220 RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPP  297 (466)
T ss_pred             cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCC
Confidence            356665555  457799999999998444443  47899999998742111  111112222     243333222111 


Q ss_pred             ceEEEEEEcCCCC----cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCCCeeee
Q psy573           93 GRYQCVVKNVAGT----RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVL  167 (216)
Q Consensus        93 g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~  167 (216)
                      -..+|.+.-....    ..+.+..-.|+.+|.+.+.     ...|+   ..|.+.--| ...+.|..++...+.......
T Consensus       298 PsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~  369 (466)
T PHA03270        298 RNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FGGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVA  369 (466)
T ss_pred             CCceEEEEEccCCccceeecccccCccccCCeEEEE-----EeCCE---EEEeccccCCCCEEEEEecCCCCCCccceee
Confidence            2579998632221    1122333445555655432     22333   346654333 347999887765543322221


Q ss_pred             c------CCeEEEe---cCCCCCCeEEEEEEEc
Q psy573          168 P------SRSLQLS---DVRLEDGGEYVCEAEN  191 (216)
Q Consensus       168 ~------~~~l~i~---~~~~~d~g~y~C~~~n  191 (216)
                      .      .+...|.   .+.. ...+|+|.+..
T Consensus       370 ~G~C~~~PGlvNlrS~~plSd-~~~eYTCrl~G  401 (466)
T PHA03270        370 GGPCPGRPGLARVRSALPLSR-EHSEYTCRLVG  401 (466)
T ss_pred             cccCCCCCCceeeeccccccc-CCceEEEEEee
Confidence            1      1222222   2222 24699999864

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.07  E-value=0.012  Score=35.47  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             eEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           73 RLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        73 ~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      ++... .+..|.|..++.+|+|.|.-++++..|......+.+.|
T Consensus        63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            44433 45689999999999999999999988877655555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.06  E-value=0.064  Score=40.52  Aligned_cols=166  Identities=16%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCceEEE--ecC-------cEEEE
Q psy573           16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKRLRL--VDG-------TNLAI   84 (216)
Q Consensus        16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~--~~~-------~~l~i   84 (216)
                      +.+.+-..+|.+.+.+  ..+.+|++..-.|.+....|.  ..+.|+.+|.............  .++       ++|.+
T Consensus       239 ~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl  316 (490)
T PHA03271        239 IYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITL  316 (490)
T ss_pred             EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEc
Confidence            3344444466666665  456799999999998444443  4789999998874333222111  111       23444


Q ss_pred             cccCCCCCceEEEEEEcCCCC-c--ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGT-R--ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMP  160 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~-~--~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~  160 (216)
                      .+...+..-..+|.+.-.... .  .+.+..-.|..+|.+..     ....|+   ..|.+.--| ...+.|.-++...+
T Consensus       317 ~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv-----~FedG~---AVCtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        317 GNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL-----AFKDGY---AICTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             ccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE-----EEeCCE---EEEeccccCCCcEEEEEecCCCCC
Confidence            443323334689998643221 1  12222333444554443     233333   346654333 34789987766543


Q ss_pred             CCCe---eee----cCCeEEEec-CCCCC---CeEEEEEEEc
Q psy573          161 EDRM---SVL----PSRSLQLSD-VRLED---GGEYVCEAEN  191 (216)
Q Consensus       161 ~~~~---~~~----~~~~l~i~~-~~~~d---~g~y~C~~~n  191 (216)
                      ....   ...    ..+...|.. ...+|   .-.|+|.+..
T Consensus       389 n~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        389 NTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             CcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence            2211   000    113344433 23333   3489999864

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.95  E-value=0.023  Score=43.36  Aligned_cols=131  Identities=16%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCC
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLG  156 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~  156 (216)
                      .|.|..++...+|.|.=.+.+..+.. ....+++....+|.+.+.+  .-+.+|+...-.|.+..+.++   .+.|+.|+
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            39999999999999985554443321 2334445557777766544  457889999999999665433   59999999


Q ss_pred             ccCCC-CC----eeee------cCCeEEEecCCC-CCCeEEEEEEEcCCcce--E---EEEEEEEEecceeeec
Q psy573          157 SAMPE-DR----MSVL------PSRSLQLSDVRL-EDGGEYVCEAENAVGKI--S---ASATLTVQSKYLKVIH  213 (216)
Q Consensus       157 ~~~~~-~~----~~~~------~~~~l~i~~~~~-~d~g~y~C~~~n~~~~~--~---~~~~l~v~~~p~~~~~  213 (216)
                      ..+.. ..    ....      ..++|.+..... ...-..+|.+....+..  +   ....-.|-.+|.+.+.
T Consensus       277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~  350 (486)
T PHA03273        277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT  350 (486)
T ss_pred             eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE
Confidence            87762 21    1111      123455544333 33448999987554431  1   2233334455555544

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.94  E-value=0.0023  Score=40.31  Aligned_cols=78  Identities=18%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             EeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCC---CC-Cee---------e----ecCCeEEEecCCCCCCeEEEE
Q psy573          130 VSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMP---ED-RMS---------V----LPSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~---~~-~~~---------~----~~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ..-++++.|+|.+...     +...+.|.+++..+-   .. ...         .    ..+..|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3357889999998642     234599998876541   01 000         0    01123666653332 899999


Q ss_pred             EEEcCCcceEEEEEEEEEecc
Q psy573          188 EAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       188 ~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      .+.......+..+.|......
T Consensus       103 eVt~~~~ege~~i~Lk~~~~s  123 (130)
T PF08204_consen  103 EVTELSREGETTIELKYRVVS  123 (130)
T ss_dssp             EEEETTEEEEEEEEEEE----
T ss_pred             EEEecCCCceEEEEEEEEEEE
Confidence            999888888888887775443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.80  E-value=0.012  Score=35.18  Aligned_cols=63  Identities=19%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             eEeCCCcEEEEEEeCC-CCC--cEEEEeeCCccCCCCCeee--------ecCCeEEEecCCCCCCe-EEEEEEEcC
Q psy573          129 TVSAGSIIVFECSVGG-DAV--LTVHWKRLGSAMPEDRMSV--------LPSRSLQLSDVRLEDGG-EYVCEAENA  192 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~-~p~--~~i~W~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g-~y~C~~~n~  192 (216)
                      .+.+|..+++.|.+.+ .|.  ..+.|+++...+.......        .....+++.. ..+|.| .|+|.+.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            3478999999999954 343  5699988665543322111        1123455554 366666 999998643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.72  E-value=0.019  Score=35.44  Aligned_cols=64  Identities=11%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccC--------------C--CCCeeee-----cCCeEEEecCCCCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAM--------------P--EDRMSVL-----PSRSLQLSDVRLED  181 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~--------------~--~~~~~~~-----~~~~l~i~~~~~~d  181 (216)
                      ....+..|..+.|.|.+.+...   -.+.|.|.....              .  ..+....     ..-.|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            4456778889999999966542   357888743211              0  0111111     11359999999999


Q ss_pred             CeEEEEEE
Q psy573          182 GGEYVCEA  189 (216)
Q Consensus       182 ~g~y~C~~  189 (216)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG4597|consensus

Probab=96.66  E-value=0.0037  Score=47.54  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEee---CCccCCCC------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKR---LGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~---~~~~~~~~------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +..-.+..+++..++|.+.|.+.+.++|.+   ++..+-..      +........|.|-+....|.|.|+|.+.+..|.
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            344467788999999999999999999975   23222111      111123356999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy573          196 ISASATLTVQ  205 (216)
Q Consensus       196 ~~~~~~l~v~  205 (216)
                      ..+.+.+.+.
T Consensus       283 ~~rdv~c~s~  292 (560)
T KOG4597|consen  283 LRRDVPCSSV  292 (560)
T ss_pred             eeccceeeee
Confidence            9888877765

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.65  E-value=0.066  Score=40.44  Aligned_cols=113  Identities=15%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcc-cceeEEEE-eecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeC
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRV-LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRL  155 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~  155 (216)
                      .+.|.++...++|.|.-...+...... ...+.+.+ +.+|.+...+  ..+..|+...-.|.+..+.++   .+.|+.|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            599999999999966554444322211 22233444 4455555543  357789999999999665433   5999999


Q ss_pred             CccCCCCC---eee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          156 GSAMPEDR---MSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       156 ~~~~~~~~---~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |.......   ...         ..-+++.+.+......-..+|.+....+.
T Consensus       286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~  337 (490)
T PHA03271        286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGD  337 (490)
T ss_pred             CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCC
Confidence            87653221   111         01123444333323344899999866553

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.57  E-value=0.21  Score=37.67  Aligned_cols=71  Identities=14%  Similarity=0.168  Sum_probs=43.0

Q ss_pred             eEEecCCcE-EEEeeCCCCCCCCeeEEeeCCEE-----eccccCce------EEE--ecCcEEEEcccCCCCCceEEEEE
Q psy573           34 QRVAAGDTA-LLECGPPRGHPEPTLVWKKNGHP-----IDFENSKR------LRL--VDGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        34 ~~~~~G~~~-~l~C~~~~~~~~~~~~W~~~~~~-----~~~~~~~~------~~~--~~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      ..+.-|+.+ .|+|..+.......+...+.+..     +.......      +-.  ....++.+.|++.+|+|.|+|.+
T Consensus        21 Ii~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCIF  100 (500)
T PHA02914         21 IFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCIF  100 (500)
T ss_pred             EEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEEE
Confidence            455667776 99999866655567777664321     10000000      000  01236888999999999999998


Q ss_pred             EcCCC
Q psy573          100 KNVAG  104 (216)
Q Consensus       100 ~~~~~  104 (216)
                      .....
T Consensus       101 YLn~~  105 (500)
T PHA02914        101 YLGDN  105 (500)
T ss_pred             EeCCc
Confidence            75443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.55  E-value=0.0082  Score=42.31  Aligned_cols=48  Identities=13%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             CCcEEEEeeCCccC-CCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          146 AVLTVHWKRLGSAM-PED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       146 p~~~i~W~~~~~~~-~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ..|.+.|...++.. ... ...+...+.|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            36889999765544 433 3455577889999999999999999998665

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=96.53  E-value=0.019  Score=40.68  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=46.0

Q ss_pred             EeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          130 VSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      ..-++++.+.|.+..-     ....+.|.+++..+-..+..  ...+|.+... ..-.|+|+|.|.+........+.|..
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence            3457889999998643     34469999998876322211  2234554433 23389999999876655555555554


Q ss_pred             E
Q psy573          205 Q  205 (216)
Q Consensus       205 ~  205 (216)
                      .
T Consensus       105 ~  105 (286)
T PHA03042        105 V  105 (286)
T ss_pred             E
Confidence            4

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.50  E-value=0.26  Score=37.92  Aligned_cols=131  Identities=18%  Similarity=0.254  Sum_probs=71.8

Q ss_pred             ceeeEEe-eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEecc-cc-CceEEEe-cC-----cEEEE
Q psy573           16 KKLKIEM-LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDF-EN-SKRLRLV-DG-----TNLAI   84 (216)
Q Consensus        16 ~~l~v~~-~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~-~~-~~~~~~~-~~-----~~l~i   84 (216)
                      ..++|.. .+|.+.+.+  ..+.+|++..-.|.+....|.  ..+.|+.++..+.. .. ....... ++     +.|++
T Consensus       228 ~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~  305 (486)
T PHA03273        228 TSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSI  305 (486)
T ss_pred             eEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEec
Confidence            4455543 356665555  457899999999998444443  47899999998852 11 1122211 12     23444


Q ss_pred             cccCC-CCCceEEEEEEcCCCC-cc---cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC
Q psy573           85 QDSRK-TDDGRYQCVVKNVAGT-RE---STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG  156 (216)
Q Consensus        85 ~~~~~-~d~g~y~C~~~~~~~~-~~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~  156 (216)
                      .+... +..-..+|.+.-.... ..   +.+..-.|..+|.+.+     ....|   ...|.+.--|.  ..+.|..++
T Consensus       306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-----~F~~G---~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-----TVEDG---DAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-----EEeCC---EEEEecccccCCCeeEEEEccC
Confidence            44322 2334589998632221 11   1233344555565543     22233   34577755544  678998766

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.45  E-value=0.0072  Score=42.56  Aligned_cols=50  Identities=14%  Similarity=0.400  Sum_probs=39.3

Q ss_pred             CCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           53 PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        53 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..|.+.|...+... ........+...+.|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            46789998865443 245556777888899999999999999999987543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=95.21  E-value=0.22  Score=35.52  Aligned_cols=63  Identities=22%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             EecCCcEEEEeeCCCCC-----CCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           36 VAAGDTALLECGPPRGH-----PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      -..++.+.++|.+ ...     ....+.|..+++.+-.....     +.++|.+... ..-.|.|+|++.+....
T Consensus        28 T~CN~TV~IpC~v-~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f~-~~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         28 TTCNKTIVIVCNL-NLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNFS-KNLSGNYTCEAINKFNK   95 (286)
T ss_pred             EecCceEEEEeec-CChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEecc-ccCCCceeEEEeecccC
Confidence            4568999999987 221     24568999998877322221     1245665544 34479999999875543

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.11  E-value=0.28  Score=29.00  Aligned_cols=66  Identities=21%  Similarity=0.450  Sum_probs=43.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCC--eEEEecCCCCCCeEEEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSR--SLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +....+..|.+++..|.....     ....|.|..++..++.+.+....+.  .+++.+......-.|.|...
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            455578899999999998533     3446999999888888877766554  45555555544556777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.07  E-value=0.12  Score=30.49  Aligned_cols=69  Identities=20%  Similarity=0.448  Sum_probs=42.6

Q ss_pred             ecccceEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +.|+...+..|++++..|.....    .....+.|..++..+   ...++...++  +.+++.+.....+-.|-|...
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i---P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI---PGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES---TCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC---ChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            45667788999999999987433    244588999988855   2333333333  357777766665556777644

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03269 envelope glycoprotein C; Provisional

Probab=94.76  E-value=1.6  Score=34.23  Aligned_cols=165  Identities=16%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             eeeEEe-eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEecccc-CceEEEecCc------EEEEcc
Q psy573           17 KLKIEM-LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQD   86 (216)
Q Consensus        17 ~l~v~~-~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~   86 (216)
                      .++|.. .+|.+.+.+  ..+.+|++..-.|.+....|.  ..+.||.++..+.... ........++      .|++.+
T Consensus       321 ~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~  398 (566)
T PHA03269        321 HITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPA  398 (566)
T ss_pred             EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccC
Confidence            344433 355555554  567899999999998444443  4789999988774211 1111212222      344422


Q ss_pred             cCCCC--CceEEEEEEcCCCCc-c---cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCcc
Q psy573           87 SRKTD--DGRYQCVVKNVAGTR-E---STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSA  158 (216)
Q Consensus        87 ~~~~d--~g~y~C~~~~~~~~~-~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~  158 (216)
                      ....|  --..+|.+.-..... .   +.+..-.|...|.+++     ....|+   ..|.+.--|.  ..+.|..++..
T Consensus       399 ~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        399 QKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             ccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCC
Confidence            22222  234699986332211 1   2233344555565543     222333   4577654543  47899877665


Q ss_pred             CCCCCeeee-----cCCeEEEec---CCCCC-CeEEEEEEEc
Q psy573          159 MPEDRMSVL-----PSRSLQLSD---VRLED-GGEYVCEAEN  191 (216)
Q Consensus       159 ~~~~~~~~~-----~~~~l~i~~---~~~~d-~g~y~C~~~n  191 (216)
                      .........     ..+...|..   +...| .-+|+|.+..
T Consensus       471 ~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        471 IEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             CCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence            433222211     113344444   33333 3489999864

>KOG4597|consensus

Probab=93.83  E-value=0.12  Score=39.83  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEee---CCEEeccc---cCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKK---NGHPIDFE---NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~---~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      ....+.+|+...++|.+ .+.+.+.|.|.+   ++..+...   ...+....+-..|.|.+....|+|-|+|.+.+..+.
T Consensus       204 a~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             chhhcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            34567789999999998 788999999976   22222111   111122223357999999999999999999988776


Q ss_pred             cccceeEEEE
Q psy573          106 RESTDAVLRV  115 (216)
Q Consensus       106 ~~~~~~~l~v  115 (216)
                      . ...+.+.+
T Consensus       283 ~-~rdv~c~s  291 (560)
T KOG4597|consen  283 L-RRDVPCSS  291 (560)
T ss_pred             e-eccceeee
Confidence            4 33344433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.36  E-value=0.41  Score=35.63  Aligned_cols=21  Identities=10%  Similarity=0.227  Sum_probs=17.3

Q ss_pred             cEEEEEEeCCCCCc--EEEEeeC
Q psy573          135 IIVFECSVGGDAVL--TVHWKRL  155 (216)
Q Consensus       135 ~~~l~C~~~~~p~~--~i~W~~~  155 (216)
                      .+.|.|.+.|..+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999887544  5889999

>PHA02982 hypothetical protein; Provisional

Probab=93.24  E-value=0.53  Score=32.33  Aligned_cols=70  Identities=19%  Similarity=0.361  Sum_probs=46.2

Q ss_pred             CceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCcc-CC----------------CC--C-eee---ecCCeEEEecCCCCC
Q psy573          126 KDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSA-MP----------------ED--R-MSV---LPSRSLQLSDVRLED  181 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~-~~----------------~~--~-~~~---~~~~~l~i~~~~~~d  181 (216)
                      .+.....++.+.|.|.... ....+..|..+... +.                ..  . ...   ...++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            3445667899999999532 23445788775321 11                00  0 001   134789999999999


Q ss_pred             CeEEEEEEEcCCcc
Q psy573          182 GGEYVCEAENAVGK  195 (216)
Q Consensus       182 ~g~y~C~~~n~~~~  195 (216)
                      .|=|+|.+....+.
T Consensus       112 ~GCYtc~~ks~~~k  125 (251)
T PHA02982        112 LGCFTCEAKDAEGK  125 (251)
T ss_pred             CCceEEEEecCCCc
Confidence            99999999987655

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=93.09  E-value=1.2  Score=27.10  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEE
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQ  205 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v~  205 (216)
                      .+.+|.|..+++.|+|.|.-.+.+..|.. ...+.+.|.
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            55789999999999999999999999984 445666554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03052 Hypothetical protein; Provisional

Probab=92.18  E-value=0.6  Score=25.66  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             CceeEeCCCcEEEEEEeC---CCCCcEEEEeeCCccC
Q psy573          126 KDTTVSAGSIIVFECSVG---GDAVLTVHWKRLGSAM  159 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~~~  159 (216)
                      ....+..|..++|.|.+.   +...+.+.|.-|+...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            556778899999999983   2335569999998776

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.05  E-value=1.4  Score=25.40  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=25.7

Q ss_pred             CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE
Q psy573           54 EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        54 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .+.+.|+..+...         ..............+|+|.+.|.+.
T Consensus        26 ~~~~~l~~~~~k~---------~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKS---------LETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEE---------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCccc---------cccceEEEEecCCCCCCEEEEEEEc
Confidence            3466676655443         2223456677788899999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03052 Hypothetical protein; Provisional

Probab=91.91  E-value=0.83  Score=25.12  Aligned_cols=37  Identities=19%  Similarity=0.416  Sum_probs=27.8

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCCEEe
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPI   66 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~   66 (216)
                      .|....+..|.+++|.|.+.-+.+  .+.+.|.-++..+
T Consensus         3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            345678889999999999843332  4578898888776

>KOG0613|consensus

Probab=91.86  E-value=0.38  Score=41.78  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             eEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCCCCee------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMS------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .+..+..+.+.|...+.+.+. +.|+++..........      ......+.+..+...+.+.|.|.+.|..|.......
T Consensus       345 ~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~  424 (1205)
T KOG0613|consen  345 TARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE  424 (1205)
T ss_pred             ccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccch
Confidence            445567789999998888776 9999876543222100      112235777788888999999999999887554443


Q ss_pred             EEEE
Q psy573          202 LTVQ  205 (216)
Q Consensus       202 l~v~  205 (216)
                      ..+.
T Consensus       425 ~~vs  428 (1205)
T KOG0613|consen  425 STVS  428 (1205)
T ss_pred             hhcc
Confidence            3343

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=91.77  E-value=1.7  Score=25.76  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ..+.+.|+...+..|+++.+.|..  +-+.+ .+.|.-.-...       ......  ..+.+.+++. | ..-.|.+.-
T Consensus         4 f~v~v~P~~~vV~~G~Sv~VNCSt--sC~~p~~~GLET~L~k~-------~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C   72 (91)
T PF03921_consen    4 FEVRVSPEEPVVPPGGSVWVNCST--SCPQPEKIGLETSLSKT-------ELDSGPQWKAFQLSNVTE-D-SSPLCFFNC   72 (91)
T ss_dssp             S-EEEESSEEEEETTEEEEEEEEE--SSSS-SEEEEESSSEEE-------EEEEETTEEEEEEEEE-S-C-EEEEEEEEE
T ss_pred             eEEEEECCccEECCCCCEEEEEcC--CCCCCCcceEEEecCCc-------ccCCCCcEEEEEEEcccc-C-CeEEEEEEc
Confidence            356678888899999999999986  32333 44443221111       000111  2577788876 4 467899885


Q ss_pred             CCCCcccceeEEEEeecce
Q psy573          102 VAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~  120 (216)
                      . +.....+..+.|+.+|.
T Consensus        73 ~-g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   73 S-GEQSSASANITVYKPPE   90 (91)
T ss_dssp             T-TEEEEEEEEEEEEB--S
T ss_pred             C-CeEEEeEEeeEEeCCCC
Confidence            3 44445677788877763

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.69  E-value=5.7  Score=31.58  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecce---------EEeCC------------CceeEeCCCcEE
Q psy573           79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---------IIRGP------------KDTTVSAGSIIV  137 (216)
Q Consensus        79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~---------~~~~~------------~~~~~~~g~~~~  137 (216)
                      .+.|+|.+++.+++|.|.-...+..+ .....+.|.|..++.         ..+.|            .......|+++.
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            35699999999999999988887655 445566777765211         11111            223555789888


Q ss_pred             EEEEeCCC---C--CcEEEEeeC
Q psy573          138 FECSVGGD---A--VLTVHWKRL  155 (216)
Q Consensus       138 l~C~~~~~---p--~~~i~W~~~  155 (216)
                      +.-.....   +  ..+|.|+.-
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEe
Confidence            86654322   1  336889763

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.62  E-value=0.64  Score=36.34  Aligned_cols=77  Identities=17%  Similarity=0.282  Sum_probs=12.7

Q ss_pred             CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceE--------------------EeCCCceeEeCCCcEEE
Q psy573           79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI--------------------IRGPKDTTVSAGSIIVF  138 (216)
Q Consensus        79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~--------------------~~~~~~~~~~~g~~~~l  138 (216)
                      .+.|.|.+++.+|+|.|.-...+..+......+.|.|..+...                    ...........|+++.+
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            3569999999999999999888766655455566666542111                    11122335557888887


Q ss_pred             EEEeCCC----C--CcEEEEeeC
Q psy573          139 ECSVGGD----A--VLTVHWKRL  155 (216)
Q Consensus       139 ~C~~~~~----p--~~~i~W~~~  155 (216)
                      .-.+...    .  ..+|.|+.-
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~~  190 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYYM  190 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEEE
T ss_pred             eEEEEeccCCCCCeeEEEEEEEe
Confidence            7665222    1  236889763

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=91.42  E-value=0.73  Score=27.39  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=38.9

Q ss_pred             EEEEEE-eCCCCCcEEEEeeC--CccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          136 IVFECS-VGGDAVLTVHWKRL--GSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       136 ~~l~C~-~~~~p~~~i~W~~~--~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +.-.|. +.|.|+..|+|.-+  |.. .. ......+      +.+.+-.....|.-..+|.+.+..-....++.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-et-q~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-EF-QEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-ee-eeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            445788 48889999999742  221 10 0001111      2344445555567799999998765555555554

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=91.27  E-value=5.5  Score=30.57  Aligned_cols=155  Identities=15%  Similarity=0.249  Sum_probs=84.4

Q ss_pred             eEEecCCcEEEEeeCCC-C-CCCCeeEEeeCCEEec---------------cccCceEEEe---------cCcEEEEccc
Q psy573           34 QRVAAGDTALLECGPPR-G-HPEPTLVWKKNGHPID---------------FENSKRLRLV---------DGTNLAIQDS   87 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~-~-~~~~~~~W~~~~~~~~---------------~~~~~~~~~~---------~~~~l~i~~~   87 (216)
                      +.+..|..+.|.|...- + ....+..|+-.+-++.               ......+.+.         ..++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            45666999999997621 1 2345778987554331               1111111111         2357999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCC-CcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAG-SIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM  164 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~  164 (216)
                      ....+|-|.|++....... ....-|.|.....+      .-..+| ......|-+...  .++++.|.-+|-.......
T Consensus       354 ~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~  426 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKE-ECRHCFKVADHVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIA  426 (500)
T ss_pred             EEEcCCceEEEEecCcchh-hhhhheEeccEEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCeec
Confidence            9999999999998653221 11222222221111      011132 345667877433  4667999887754322111


Q ss_pred             --------eee---cCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          165 --------SVL---PSRSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       165 --------~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                              ...   ....+.|.+-...| --.-.|......+.
T Consensus       427 ~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        427 DALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY  469 (500)
T ss_pred             CcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence                    111   11346666665555 34667877666554

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.07  E-value=1.9  Score=24.90  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             CcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEE-EcCCcceEEEEEEEE
Q psy573          147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEA-ENAVGKISASATLTV  204 (216)
Q Consensus       147 ~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~~~~~~~~~l~v  204 (216)
                      .+.+.|.-.+...      ........+......|+|.+.|.| .+..-.......|.+
T Consensus        26 ~~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4456666544321      123455677788889999999999 555544555555444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG0613|consensus

Probab=89.29  E-value=1.2  Score=39.03  Aligned_cols=160  Identities=15%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEE---ecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      ++....+..+++.|.. .+.+.+. +.||++...........+..   .....+.+..+...+.+.|.|.+.|..+....
T Consensus       343 ~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~  421 (1205)
T KOG0613|consen  343 SVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT  421 (1205)
T ss_pred             eeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence            4566778889999987 5666665 99999766553322221111   12346888899999999999999987765432


Q ss_pred             ceeEEEEeecc-----eEEeCCCceeEeCC--CcEEEEEEeCCCCCc--EEEEeeCCccCCCCCeeeecC--CeEEEecC
Q psy573          109 TDAVLRVLVKP-----YIIRGPKDTTVSAG--SIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPS--RSLQLSDV  177 (216)
Q Consensus       109 ~~~~l~v~~~p-----~~~~~~~~~~~~~g--~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~--~~l~i~~~  177 (216)
                      .... .+...+     .............+  +.+.+.|.+.+.+-+  ..+|++++.............  .+|.+.-.
T Consensus       422 ~~~~-~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~  500 (1205)
T KOG0613|consen  422 IAES-TVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVA  500 (1205)
T ss_pred             cchh-hcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeecc
Confidence            2221 222211     11111122233333  678888888777644  456666655443332222222  34566666


Q ss_pred             CCCCCeEEEEEEEcCCc
Q psy573          178 RLEDGGEYVCEAENAVG  194 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~~  194 (216)
                      ...++|.|.-......+
T Consensus       501 ~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  501 SLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             CCCccchhhhhhhccCC
Confidence            67788888655444333

>PHA03282 envelope glycoprotein E; Provisional

Probab=89.18  E-value=9.4  Score=30.03  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=26.0

Q ss_pred             CcEEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEe
Q psy573           79 GTNLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVL  116 (216)
Q Consensus        79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~  116 (216)
                      +.+|.|.+++.+|+|.|.-.+....... +...+.|.|.
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            5679999999999999998875433322 2333455553

>PHA03189 UL14 tegument protein; Provisional

Probab=87.98  E-value=3.2  Score=30.45  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=16.1

Q ss_pred             cccceEEecCCcEEEEeeCC
Q psy573           30 QPKSQRVAAGDTALLECGPP   49 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~   49 (216)
                      .|.+..+..|+.+++.|.+.
T Consensus        58 spAP~l~pyGdrvtVpC~fp   77 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFP   77 (348)
T ss_pred             CCCccccCCCceeeeeeeec
Confidence            45566788999999999873

>KOG1026|consensus

Probab=87.72  E-value=1.9  Score=36.00  Aligned_cols=159  Identities=18%  Similarity=0.217  Sum_probs=81.0

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      ...+..|..+++.|.. .+.+.+.+.|+..+........... +-.+-...+.+        +.|..++..+.. ...+.
T Consensus       201 ~~~v~~~~~~~~~c~~-~~~~vp~~~~~~~~~~~~~~~~~~~-~c~~~~~~~~~--------~~c~~E~~~~~~-~~~v~  269 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQ-AGIPVPCHYWFPNCLASSNTNQTSS-LCRSECEVLEN--------DLCIAENAVARS-NPSIL  269 (774)
T ss_pred             hhhhcccchheeeeec-ccCCCcceeeecccccccCCCcccc-cccccceeeec--------hhhHHHHhhhhc-Cceee
Confidence            4567789999999998 7889999999887654422111110 00011111111        788887766553 22333


Q ss_pred             EEEeecceEEeCCCceeEeCCCcEEEEEE---eCCCCCcEEEEeeCCccCCCCC---eeeec-CCeEEEecCCCCCCeEE
Q psy573          113 LRVLVKPYIIRGPKDTTVSAGSIIVFECS---VGGDAVLTVHWKRLGSAMPEDR---MSVLP-SRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       113 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~---~~~~p~~~i~W~~~~~~~~~~~---~~~~~-~~~l~i~~~~~~d~g~y  185 (216)
                      +.+..++......... -.     .-.|.   +.+.+.+...|..++.-+....   ..... ..-+.....+-.+.|.|
T Consensus       270 ~~~~~p~~~~~~~~~~-~~-----~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~  343 (774)
T KOG1026|consen  270 LVVDLPKAEVLLCSPL-SD-----HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY  343 (774)
T ss_pred             eEEecccccccCCCCc-cc-----cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence            3333332211111100 00     22233   2345566677777665432111   00111 01122222345578999


Q ss_pred             EEEEEcCCcceEEEEEEEEEecc
Q psy573          186 VCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      +|.+.+..|.........+...|
T Consensus       344 ~~~~e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  344 TLFPELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             eeeecccCccccccCcCccccCC
Confidence            99999998876655555555544

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=87.62  E-value=2.1  Score=32.09  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=16.7

Q ss_pred             cEEEEeeCCCCCC-CCeeEEeeC
Q psy573           41 TALLECGPPRGHP-EPTLVWKKN   62 (216)
Q Consensus        41 ~~~l~C~~~~~~~-~~~~~W~~~   62 (216)
                      .++|.|.+....| ...+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999844444 357899999

>TIGR00864 PCC polycystin cation channel protein

Probab=87.10  E-value=33  Score=33.84  Aligned_cols=178  Identities=12%  Similarity=0.107  Sum_probs=97.6

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-EeccccCceEEEecCcEEEEcccCCCCC
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      .+-.+.|+.....+.+......+..|+.++|.+.+ .......+.|..++. ......        +..+  . -.-...
T Consensus      1857 ~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGdgs~~~~t~--------~~t~--~-HsY~~~ 1924 (2740)
T TIGR00864      1857 ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILL-AAGSAVNFRLQIGGAAPEVLQP--------GPRF--S-HSFPRV 1924 (2740)
T ss_pred             eeeeEEEEEecceEEEecccccccCCCEEEEEEEe-cCCCceEEEEEeCCCCceeecC--------CCeE--E-eecCCC
Confidence            34455566654566666666678899999999987 444567888877533 221101        1111  1 122334


Q ss_pred             ceEEEEEE--cCCCCcccceeEEEEeecc-eEEeCCC-ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec
Q psy573           93 GRYQCVVK--NVAGTRESTDAVLRVLVKP-YIIRGPK-DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP  168 (216)
Q Consensus        93 g~y~C~~~--~~~~~~~~~~~~l~v~~~p-~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  168 (216)
                      |.|.-.+.  |..+.. .....+.|..+. .+.+... ......|+...+.-.+....+..+.|++.-..+..+......
T Consensus      1925 G~Y~VtV~A~N~Vs~~-~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~ 2003 (2740)
T TIGR00864      1925 DDHMVNLRAKNEVSCA-QANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHM 2003 (2740)
T ss_pred             CcEEEEEEEEecccee-eeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeec
Confidence            66665543  444432 233444554442 2222111 112577888888888865556679998764444333332222


Q ss_pred             CCeEEEecCCCCCCeEEEEEE--EcCCcceEEEEEEEEEec
Q psy573          169 SRSLQLSDVRLEDGGEYVCEA--ENAVGKISASATLTVQSK  207 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~--~n~~~~~~~~~~l~v~~~  207 (216)
                      +..+...   ....|.|.-.+  .|..+.......+.|+.+
T Consensus      2004 G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864      2004 GKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred             CCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence            3333222   23588887764  577787766666666643

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03240 envelope glycoprotein M; Provisional

Probab=87.00  E-value=1.7  Score=30.01  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=39.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEee-------CCE----Ee---ccccCce------------EE-EecCcEEEEc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKK-------NGH----PI---DFENSKR------------LR-LVDGTNLAIQ   85 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-------~~~----~~---~~~~~~~------------~~-~~~~~~l~i~   85 (216)
                      .+.+.+|++|+|.-.- ...+.-.+.||+       ++.    .+   .....++            .. .=.+++|.|.
T Consensus        32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~  110 (258)
T PHA03240         32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA  110 (258)
T ss_pred             ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence            4678899999997642 335677899998       211    11   1111111            10 1135689999


Q ss_pred             ccCCCCCceEE
Q psy573           86 DSRKTDDGRYQ   96 (216)
Q Consensus        86 ~~~~~d~g~y~   96 (216)
                      ++..+|.|.|.
T Consensus       111 ~vn~sd~~nYc  121 (258)
T PHA03240        111 HLNLSDAGEYC  121 (258)
T ss_pred             EEeecCcchhh
Confidence            99999999984

>PHA03286 envelope glycoprotein E; Provisional

Probab=85.98  E-value=15  Score=28.82  Aligned_cols=75  Identities=16%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee-----cceEE--e------------CCCceeEeCCCcEEEEE
Q psy573           80 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYII--R------------GPKDTTVSAGSIIVFEC  140 (216)
Q Consensus        80 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~------------~~~~~~~~~g~~~~l~C  140 (216)
                      ..|+|.+++.+++|.|.=...+..+......+.+.|..     +|...  .            .........|+++.+.-
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            56999999999999999988877666556666777742     11111  1            12233555799887766


Q ss_pred             EeCCC-----CCcEEEEee
Q psy573          141 SVGGD-----AVLTVHWKR  154 (216)
Q Consensus       141 ~~~~~-----p~~~i~W~~  154 (216)
                      .....     -..+|.|+.
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEeecccCCCceEEEEEEE
Confidence            54311     134688976

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=85.02  E-value=6.1  Score=23.49  Aligned_cols=81  Identities=21%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec---CCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP---SRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .+.|....+..|+++.+.|...-..+..+-|.-.-..     .....   =..+.+.+++.  ...-.|.+.-.......
T Consensus         7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k-----~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~   79 (91)
T PF03921_consen    7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSK-----TELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSA   79 (91)
T ss_dssp             EEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEE-----EEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEE
T ss_pred             EEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCC-----cccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEe
Confidence            3456777889999999999985322223445321100     00111   13467788875  46778999865545677


Q ss_pred             EEEEEEEecce
Q psy573          199 SATLTVQSKYL  209 (216)
Q Consensus       199 ~~~l~v~~~p~  209 (216)
                      +++|+|-..|+
T Consensus        80 ~~~ItVY~~Pe   90 (91)
T PF03921_consen   80 SANITVYKPPE   90 (91)
T ss_dssp             EEEEEEEB--S
T ss_pred             EEeeEEeCCCC
Confidence            88888877664

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=83.96  E-value=6.4  Score=23.55  Aligned_cols=60  Identities=15%  Similarity=0.446  Sum_probs=36.5

Q ss_pred             EEEEeeCCCCCCCCeeEEeeC--CEE-ec--cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           42 ALLECGPPRGHPEPTLVWKKN--GHP-ID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        42 ~~l~C~~~~~~~~~~~~W~~~--~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +.-.|....+.|...|.|.-+  |.. .+  ....+.+...  +.+.+-.....|.-..+|.+....
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~--S~y~lVPs~~~~gk~lTCvV~h~~   87 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVI--SRYRLVPSREAHKQKLTCIVNYRN   87 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEE--EEEEEeECHHHcCCEeEEEEEecc
Confidence            455798778999999999753  211 10  0111111111  246666777777778999998753

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=83.37  E-value=5.6  Score=21.77  Aligned_cols=21  Identities=33%  Similarity=0.699  Sum_probs=15.0

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEee
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKK   61 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~   61 (216)
                      +..|++++|.     +.+...+.||+
T Consensus         2 v~~G~N~TL~-----Gp~~~~V~Wy~   22 (63)
T PF02440_consen    2 VTVGSNVTLV-----GPPDGPVTWYK   22 (63)
T ss_pred             EeEcCcEEEe-----CCCCCceEEEE
Confidence            5678899884     33556789984

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		5e-25
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-13
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		5e-25
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-13
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		7e-19
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		7e-19
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-13
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		9e-16
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-15
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		4e-15
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		8e-05
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-15
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		4e-15
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-06
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-14
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-14
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-14
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		3e-14
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		8e-14
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-13
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-13
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-13
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-13
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-12
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		1e-12
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		1e-12
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-12
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		2e-12
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		2e-12
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-12
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-12
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		4e-12
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		5e-12
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		9e-12
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		9e-12
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		1e-11
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-11
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		8e-11
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		8e-11
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		6e-10
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		7e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-09
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-09
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-09
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-08
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-08
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-08
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-07
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		6e-08
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		7e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		9e-08
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		1e-07
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-07
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		9e-07
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-06
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-06
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-06
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		4e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		5e-06
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		5e-06
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		5e-06
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		5e-06
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		5e-06
2dl9_A	103	Solution Structure Of The Ig-Like Domain Of Human L		9e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		2e-05
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		2e-05
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		3e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-05
3ncm_A	92	Neural Cell Adhesion Molecule, Module 2, Nmr, 20 St		4e-05
3jz7_A	214	Crystal Structure Of The Extracellular Domains Of C		8e-05
3mj7_B	225	Crystal Structure Of The Complex Of Jaml And Coxsac		9e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		2e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-04
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		3e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		4e-04

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGT 80
           FRV+PK  RVA G+TALLECGPP+G PEPTL+W K+G P+D      F  S R+R+VDG 
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 81  NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
           NL I +    D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 84
            P    V   + A L C    G PEPT+ W K+G P+  + + S R++  DG       +
Sbjct: 15  HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECS-V 142
           Q  ++ D G Y CV KN  G   S  A L++ V     R  PKDT V+ G   + EC   
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 143 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
            G    T+ W + G  + +          R+ ++   +L +S+V   D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 194 G-KISASATLTVQSK 207
           G + S+ A L VQ K
Sbjct: 194 GTRESSYAKLIVQVK 208

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGT 80
           FRV+PK  RVA G+TALLECGPP+G PEPTL+W K+G P+D      F  S R+R+VDG 
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 81  NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
           NL I +    D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 84
            P    V   + A L C    G PEPT+ W K+G P+  + + S R++  DG       +
Sbjct: 15  HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECS-V 142
           Q  ++ D G Y CV KN  G   S  A L++ V     R  PKDT V+ G   + EC   
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 143 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
            G    T+ W + G  + +          R+ ++   +L +S+V   D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 194 G-KISASATLTVQSK 207
           G + S+ A L VQ K
Sbjct: 194 GTRESSYAKLIVQVK 208

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           F  +P +     G  A+LEC    G+P P+  W +    I    SK+  L+ G+NL I +
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLR-SKKYSLLGGSNLLISN 281
Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
               D G Y CVV        S  A L VLV P+ +  P +        I FEC+V G  
Sbjct: 282 VTDDDSGTYTCVV-TYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKP 340
Query: 147 VLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
           V TV+W + G   +P D   ++   +L++  V   D G Y C AEN  G   +SA L V
Sbjct: 341 VPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           FR  P    VA G+ A++EC PPRGHPEPT+ WKK+G P+D +  +R+  + G  L I  
Sbjct: 114 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRGGKLMITY 171
Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 124
           +RK+D G+Y CV  N+ G RES  A L VL +P  ++ 
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT--NLA 83
            P    V+ G+ A L C    G P PT+ W K G  +    D   S R+ L  G+   L 
Sbjct: 15  HPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 84  IQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV-LVKPYIIRGPKDTTVSAGSIIVFEC 140
           I   RK+  D+G Y CV +N  G   S DA L V +++    + P D  V+ G   V EC
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMEC 133
Query: 141 SVG-GDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KIS 197
               G    T+ WK+ GS + + D    +    L ++  R  D G+YVC   N VG + S
Sbjct: 134 QPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERES 193
Query: 198 ASATLTV 204
             A LTV
Sbjct: 194 EVAELTV 200

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 51  GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 110
           G PEP + W +NG  I+ EN K +     T L +++   +D G Y C   N AG  E   
Sbjct: 30  GSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-Q 87
Query: 111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPED 162
           A L+V V+P+II+   +TT   G + +  C   G+ +  + WKR         G    + 
Sbjct: 88  AFLQVFVQPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDG 146
Query: 163 RMSV---LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
           R+ V     S SL + DV+L D G Y CEA + +G    S  L ++
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGE 184
           + T   G  + F C   G     + W R G  + E+   +L   + +L+  ++   DGG 
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 185 YVCEAENAVGKISASATLTV 204
           YVC A N  G+    A L V
Sbjct: 73  YVCRATNKAGEDEKQAFLQV 92

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 52  HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRESTD 110
           +P+P + W +N   I   +++     +G  L I     +DDG Y C   N V G  ES  
Sbjct: 34  YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 169
           A L+V +KP I R P +  +  G   V  C+  G+   +V W +  SA+ E+ R++VL S
Sbjct: 94  A-LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVG 194
            SL++ +V+ ED G+Y C A+N++G
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLG 177

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
           P+ + V    TA + C    G+P+P + W K+  P+D   S  R++ +    L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 90  TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSVGGDA 146
           TD G+Y+CV  N AG R S+ A L V V+   P     P    +  G  +   C   G  
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP 233
Query: 147 VLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
           +  V W +    + PED M V     L+L+DV+  D   Y C A +++G I A A +TV+
Sbjct: 234 MPYVKWMQGAEDLTPEDDMPVG-RNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVK 290
Query: 206 S 206
           S
Sbjct: 291 S 291

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
           P  I+ PKD    +G +  F C   GD    V W + G  +   R   +       + +R
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
           ++      D   Y C A+N+VG+I+  A LTV
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
           +P++Q V  G  A   C   RG P P++VW+KNG  +    S+   L     ++I     
Sbjct: 12  KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70
Query: 90  T----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVF 138
                DD  Y+CV +N  G   S DA L +          P I +GP    +  G  ++ 
Sbjct: 71  VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130
Query: 139 ECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
            C   G+    ++W +  +   M   R S L    LQ+ + R ED G+Y C AEN++G  
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENSMGTE 189
Query: 197 SASATLTVQSKYLKV 211
            + AT    + Y+KV
Sbjct: 190 HSKAT----NLYVKV 200

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
           P IIR P++  V  G +  F C+  GD   ++ W++ G  +   + R +VL  +   +S 
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISI 65
Query: 177 VRLE------DGGEYVCEAENAVG-KISASATLTV 204
           +R+E      D   Y C AEN VG  +SA ATLT+
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 100

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
           +P++Q V  G  A   C   RG P P++VW+KNG  +    S+   L     ++I     
Sbjct: 14  KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 72
Query: 90  T----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVF 138
                DD  Y+CV +N  G   S DA L +          P I +GP    +  G  ++ 
Sbjct: 73  VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 132
Query: 139 ECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
            C   G+    ++W +  +   M   R S L    LQ+ + R ED G+Y C AEN++G  
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENSMGTE 191
Query: 197 SASATLTVQSKYLKV 211
            + AT    + Y+KV
Sbjct: 192 HSKAT----NLYVKV 202

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
           P IIR P++  V  G +  F C+  GD   ++ W++ G  +   + R +VL  +   +S 
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISI 67
Query: 177 VRLE------DGGEYVCEAENAVG-KISASATLTV 204
           +R+E      D   Y C AEN VG  +SA ATLT+
Sbjct: 68  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 102

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
           +++ K   V A  T   +C P  G P+PTL W KNG   +F+   R+   ++   T   I
Sbjct: 21  KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 77
Query: 85  QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
            DS   +D G Y C+V+N  G+   T   D V R   +P +  G P + TV+ GS + F 
Sbjct: 78  MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 137
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
           C V  D    + W +     GS +  D +  +                 L L +V  ED 
Sbjct: 138 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 197
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 198 GEYTCLAGNSIGLSHHSAWLTV 219

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
           +++ K   V A  T   +C P  G P+PTL W KNG   +F+   R+   ++   T   I
Sbjct: 20  KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 85  QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
            DS   +D G Y C+V+N  G+   T   D V R   +P +  G P + TV+ GS + F 
Sbjct: 77  MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
           C V  D    + W +     GS +  D +  +                 L L +V  ED 
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 35  RVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTD 91
           RV  G   +L C PP   P+  +  W  N  P+     KR R V  TN  L I +   +D
Sbjct: 19  RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGNLYIANVEASD 77
Query: 92  DGRYQCVVKNVAGTRESTDAVLRVL------VKPY---IIRGPKDTTVSAGSIIVFECSV 142
            G Y C V + + T+      + ++       KPY   I+   KD     G  +  EC  
Sbjct: 78  KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137
Query: 143 GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
            G+ V  + W+++   MP           L++ +++LED G Y CEAEN  GK    A +
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Query: 203 TVQS 206
            VQ+
Sbjct: 198 YVQA 201

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 90/202 (44%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
           +++ K   V A  T   +C P  G P PTL W KNG   +F+   R+   ++   T   I
Sbjct: 20  KMEKKLHAVPAAKTVKFKC-PSSGTPNPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 85  QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
            DS   +D G Y C+V+N  G+   T   D V R   +P +  G P + TV+ GS + F 
Sbjct: 77  MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
           C V  D    + W +     GS +  D +  +                 L L +V  ED 
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
           P       G    LEC    G+P P + W+K    +D   S +    + T L I      
Sbjct: 213 PAETYALVGQQVTLECFA-FGNPVPRIKWRK----VDGSLSPQWTTAEPT-LQIPSVSFE 266
Query: 91  DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
           D+G Y+C  +N  G R++    + V  +P  ++   DT    GS + + C+  G    TV
Sbjct: 267 DEGTYECEAENSKG-RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTV 325
Query: 151 HWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
            W R G  +  ++R+ VL +  L+ S + LED G Y C AEN  G I ASA L VQ+
Sbjct: 326 RWLRNGEPLASQNRVEVL-AGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 23  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGE 184
           C V  DA   + W    ++ GS    D +  L            +  L L +V   D GE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 185 YVCEAENAVGKISASATLTVQSK 207
           Y+C+  N +G+ + SA LTV  K
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPK 222

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 95
           V  G   +L CGPP    E +  W  N +P  +++++R    +  NL I    K+D G Y
Sbjct: 113 VRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 96  QCVVKNVAGTRE----STDAVLR---VL--VKPYI-IRGPKDTTVSAGSIIVFECSVGGD 145
            CVV N     +     T  +LR   V+   +P I ++ P+      G+ +  EC   G+
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 231
Query: 146 AVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
            V T+ W+R  G  +         +  L++ + + ED G Y C AEN+ GK  A   LT 
Sbjct: 232 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 291
Query: 205 --QSKYLKVIH 213
             Q  ++++I+
Sbjct: 292 YAQPNWVQIIN 302

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 23  KMEKRLHAVPAFNTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 139
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGE 184
           C V  DA   + W    ++ GS    D +  L            +  L L +V   D GE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 185 YVCEAENAVGKISASATLTVQSK 207
           Y+C+  N +G+ + SA LTV  K
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPK 222

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 95
           V  G   +L CGPP    E +  W  N +P  +++++R    +  NL I    K+D G Y
Sbjct: 114 VRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 96  QCVVKNVAGTRE----STDAVLR---VL--VKPYI-IRGPKDTTVSAGSIIVFECSVGGD 145
            CVV N     +     T  +LR   V+   +P I ++ P+      G+ +  EC   G+
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
Query: 146 AVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
            V T+ W+R  G  +         +  L++ + + ED G Y C AEN+ GK  A   LT 
Sbjct: 233 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Query: 205 --QSKYLKVIH 213
             Q  ++++I+
Sbjct: 293 YAQPNWVQIIN 303

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
           P       G    LEC    G+P P + W+K    +D   + +  L     L IQ+    
Sbjct: 214 PADTYALTGQMVTLECFA-FGNPVPQIKWRK----LDGSQTSKW-LSSEPLLHIQNVDFE 267
Query: 91  DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
           D+G Y+C  +N+ G R++    + +  +P  +    DT    GS + + C   G     V
Sbjct: 268 DEGTYECEAENIKG-RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 151 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
            W R G  +       +    L+ S + LED G Y C AEN  G + ASA LTVQ+
Sbjct: 327 RWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 15  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 13  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 69
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 70  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 130 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 189
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 190 GEYTCLAGNSIGISFHSAWLTV 211

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 15  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 15  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 72  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 36  VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LAIQDSRKTD 91
           V A +T    C P  G+P PT  W KNG   +F+   R+      N    L  +    +D
Sbjct: 30  VPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLIXESVVPSD 86
Query: 92  DGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFECSVGGDAV 147
            G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F C V  DA 
Sbjct: 87  KGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 146
Query: 148 LTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGEYVCEAENA 192
             + W    ++ GS    D +  L            +  L L +V   D GEY+C+  N 
Sbjct: 147 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 206
Query: 193 VGKISASATLTVQSK 207
           +G+ + SA LTV  K
Sbjct: 207 IGQANQSAWLTVLPK 221

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           +++ +   V A +T    C P  G+P PT+ W KNG   +F+   R+      N    L 
Sbjct: 14  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 70
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 71  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 131 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 190
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 191 GEYTCLAGNSIGISFHSAWLTV 212

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 89/202 (44%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLA 83
           R+  K   V A +T    C P  G+P P++ W KNG   +F    R+  +       +L 
Sbjct: 127 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 183
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D + R   +P +  G P + T   GS + F 
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 140 CSVGGDAVLTVHWKRL----GSAMPED---RMSVLPSRS----------LQLSDVRLEDG 182
           C V  DA   + W +     GS +  D    ++VL +            L L +V  ED 
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA L V
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVV 325

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
           Q + + + AG+T ++ C P  G+P  ++VW+++   +   N K+    +GT +     R 
Sbjct: 532 QMEKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPI-NRKQKVFPNGTLIIENVERN 589
Query: 90  TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSAGSIIVFECSV-GGDAV 147
           +D   Y CV KN  G        ++V+V P II    ++     G  +   CSV GGD  
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 148 LTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDGGEYVCEAENAVGKISASAT 201
           L + W   G A+ ED + +  SR       L +  V     G + C A N  G    +  
Sbjct: 650 LNIDWTLDGQAISED-LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708
Query: 202 LTV 204
           L V
Sbjct: 709 LNV 711

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLA 83
           R+  K   V A +T    C P  G+P P++ W KNG   +F    R+  +       +L 
Sbjct: 19  RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 75
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
           ++    +D G Y CVV+N  G+   T   D + R   +P +  G P + T   GS + F 
Sbjct: 76  MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 135
Query: 140 CSVGGDAVLTVHWKRL----GSAMPED---RMSVLPSR---------SLQLSDVRLEDGG 183
           C V  DA   + W +     GS +  D    ++VL S           L+L++V   DGG
Sbjct: 136 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195
Query: 184 EYVCEAENAVGKISASATLTVQ 205
           EY+C A N +G    +  L+V 
Sbjct: 196 EYLCRATNFIGVAEKAFWLSVH 217

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
           F ++P S  +A G++   +C    G     + W K+   I    + ++ LV+ T  L + 
Sbjct: 8   FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
              K D G+Y C   NVAG ++S  A L V   P  I+  + +  V       +EC +GG
Sbjct: 67  KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
              + V W +  + + E    RMS + S + L++ ++ +ED G+Y CEA NA G  S+S 
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 201 TLTVQ 205
           +L V+
Sbjct: 186 SLKVK 190

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
           F ++P S  +A G++   +C      P   + W K+   I    + ++ LV+ T  L + 
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVL 258
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
              K D G+Y C   NVAG ++S  A L V   P  I+  + +  V       +EC +GG
Sbjct: 259 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 317
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
              + V W +  + + E    RMS + S + L++ ++ +ED G+Y CEA NA G  S+S 
Sbjct: 318 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 377
Query: 201 TLTVQ 205
           +L V+
Sbjct: 378 SLKVK 382

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPS-RSLQL 174
           PY I   +    + G  I  +C V G   + + W +  + +   P  +M    +  SL +
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL 209
           + V   D GEY C+AEN+VG +++SA L ++ + L
Sbjct: 66  NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL 100

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
           F ++P S  +A G++   +C    G     + W K+   I    + ++ LV+ T  L + 
Sbjct: 8   FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
              K D G+Y C   NVAG ++S  A L V   P  I+  + +  V       +EC +GG
Sbjct: 67  KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
              + V W +  + + E    RMS + S + L++ ++ +ED G+Y CEA NA G  S+S 
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 201 TLTVQ 205
           +L V+
Sbjct: 186 SLKVK 190

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 28/202 (13%)
Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
           + + +   V A +T    C P  G+P PT  W KNG   +F+   R+      N    L 
Sbjct: 15  KXEKRLHAVPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84  IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
            +    +D G Y CVV+N  G+   T   D V R   +P +  G P + +   G  + F 
Sbjct: 72  XESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
           C V  DA   + W    ++ GS    D +  L                 L + +V  ED 
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
           GEY C A N++G    SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           F+  P  Q    G+ A++ C      P PT++WK  G  +  +   R  ++    L I+ 
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 87  SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSAGSIIVFECSVG 143
            +KTD+G Y+C  + +A G     D  + V V P +   +   + T + G  +   C   
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 144 GDAVLTVHWKRLGSAM----PEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKIS 197
           G    T+ W + G  +     +D   +    S +L+  +V   D  EYVC AEN  G+  
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 198 ASATLTVQSK 207
           AS  L V +K
Sbjct: 282 ASIHLKVFAK 291

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 48  PPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103
           P +G P P+  W K       + +     R++ V GT L I+D+   D G+Y CVV N  
Sbjct: 241 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSV 299
Query: 104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 163
           G  ES + VL V         P   TV  G   VF C   G+ + TV W + G A+    
Sbjct: 300 GG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358
Query: 164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
                   L++  V+ ED G Y C   N      ASA L
Sbjct: 359 ------SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 48  PPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103
           P +G P P+  W K       + +     R++ V GT L I+D+   D G+Y CVV N  
Sbjct: 235 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSV 293
Query: 104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 163
           G  ES + VL V         P   TV  G   VF C   G+ + TV W + G A+    
Sbjct: 294 GG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
                   L++  V+ ED G Y C   N      ASA L
Sbjct: 353 ------SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 17/190 (8%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
           P+ Q   +G  A   C    G P+P + W K G  +  +  + +   DG    L IQ  R
Sbjct: 14  PEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR 72
Query: 89  -KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFEC 140
            + D+  Y+C   N  G   +T A L VL +       P I  GP+   V  G      C
Sbjct: 73  VQRDEAIYECTATNSLG-EINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLC 131
Query: 141 SVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-K 195
           + GG+    + W +    +  A    R+  L S +LQ+      D G+Y C A N+ G +
Sbjct: 132 AAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 191
Query: 196 ISASATLTVQ 205
            SA A L V+
Sbjct: 192 YSAPANLYVR 201

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSL 172
           KP  ++ P+D T  +G +  F C   G+    + W + G  +   R  V+         L
Sbjct: 7   KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 173 QLSDVRLE-DGGEYVCEAENAVGKISASATLTV 204
           ++  +R++ D   Y C A N++G+I+ SA L+V
Sbjct: 67  RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 50  RGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105
           + +P P+  W K       + +     R++ V GT L I+D+   D G+Y CVV N  G 
Sbjct: 240 QSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSVGG 298
Query: 106 RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS 165
            ES + VL V         P   TV  G   VF C   G+ + TV W + G A+      
Sbjct: 299 -ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-- 355
Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
                 L++  V+ ED G Y C   N      ASA L
Sbjct: 356 ----SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 22/197 (11%)
Query: 32  KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR--- 88
           K   V   D  L+EC   +G+P P+  W +N    +     R+ +   +   + D R   
Sbjct: 25  KDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 89  --KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKD-TTVSAGSIIVFECS-VGG 144
             +  +G YQC  +N  GT  S    L+V   P   +   D   V  G+ +  +C+   G
Sbjct: 84  RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143
Query: 145 DAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRLED-GGEYVCEAENAVGKISAS 199
                + W  + S+M     + R+S   +  L  S+V L+D   +Y C A          
Sbjct: 144 LPSPVIFW--MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNAR-------FH 194
Query: 200 ATLTVQSKYLKVIHLLT 216
            T T+Q K    + +LT
Sbjct: 195 FTHTIQQKNPFTLKVLT 211

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
           P+ Q   +G  A   C    G P+P + W K G  +  +  + +   DG    L IQ  R
Sbjct: 13  PEDQTGLSGGVASFVCQA-TGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR 71
Query: 89  -KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFEC 140
            + D+  Y+C   N  G   +T A L VL +       P I  GP+   V         C
Sbjct: 72  VQRDEAIYECTATNSLG-EINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLC 130
Query: 141 SVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-K 195
           + GG+    + W +    +  A    R+  L S +LQ+      D G+Y C A N+ G +
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Query: 196 ISASATLTVQ 205
            SA A L V+
Sbjct: 191 YSAPANLYVR 200

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSL 172
           KP  I+ P+D T  +G +  F C   G+    + W + G  +   R  V+         L
Sbjct: 6   KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 173 QLSDVRLE-DGGEYVCEAENAVGKISASATLTV 204
           ++  +R++ D   Y C A N++G+I+ SA L+V
Sbjct: 66  RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
           F  +PK Q   +G  A   C    G P+P + W K G  +   NS+R   ++     G  
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82  LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
           L IQ  R   D+  Y+CV +N  G   +  A L VL +       P I  GP+   V   
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
                 C+  G+    + W      +P D      R+  L S +LQ+      D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
            A N+ G + S+ A L V+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
           P  I+ PKD    +G +  F C   GD    V W + G  +   R   +       + +R
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
           ++      D   Y C A+N+VG+I+  A LTV
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
           F  +PK Q   +G  A   C    G P+P + W K G  +   NS+R   ++     G  
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82  LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
           L IQ  R   D+  Y+CV +N  G   +  A L VL +       P I  GP+   V   
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
                 C+  G+    + W      +P D      R+  L S +LQ+      D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
            A N+ G + S+ A L V+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
           P  I+ PKD    +G +  F C   GD    V W + G  +   R   +       + +R
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
           ++      D   Y C A+N+VG+I+  A LTV
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
           P+ + V    TA + C    G+P+P + W K+  P+D   S  R++ +    L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEE 173
Query: 90  TDDGRYQCVVKNVAGTRESTDAVLRVLV 117
           TD G+Y+CV  N AG R S+ A L V V
Sbjct: 174 TDQGKYECVASNSAGVRYSSPANLYVRV 201

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 27/199 (13%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
           F  +P  Q   +G  A   C    G P+P + W K G  +   NS+R   ++     G  
Sbjct: 9   FIKKPVDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82  LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
           L IQ  R   D+  Y+CV +N  G   +  A L VL +       P I  GP+   V   
Sbjct: 65  LRIQPLRTPRDENIYECVAQNPHG-EVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
                 C+  G+    + W      +P D      R+  L S  LQ+      D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
            A N+ G + S+ A L V+
Sbjct: 182 VASNSAGVRYSSPANLYVR 200

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           FR     Q    G+ A + C      P P + W  +   +   +  R  ++   NL I +
Sbjct: 5   FREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 87  SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVG 143
             K+D+G Y+C  +  A G  +  D ++ V V P I    K  + T   G  + F C   
Sbjct: 64  INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKISASAT 201
           G     + W R G  + E+   +L   + +L+  ++   DGG YVC A N  G+    A 
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 202 LTV 204
           L V
Sbjct: 184 LQV 186

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           FR     Q    G+ A + C      P P + W  +   +   +  R  ++   NL I +
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 159
Query: 87  SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVG 143
             K+D+G Y+C  +  A G  +  D ++ V V P I    K  + T   G  + F C   
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 219
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKISASAT 201
           G     + W R G  + E+   +L   + +L+  ++   DGG YVC A N  G+    A 
Sbjct: 220 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279
Query: 202 LTV 204
           L V
Sbjct: 280 LQV 282

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQD 86
           P+ + V    TA + C    G+P+P + W K+  P+D  N+    K+LR      L I+ 
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ 173
Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           S ++D G+Y+CV  N AGTR S  A L V
Sbjct: 174 SEESDQGKYECVATNSAGTRYSAPANLYV 202

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 84
           F   P  Q   +G  A   C    G P P +VW K G  +  +  + +   DG+   L I
Sbjct: 9   FTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 85  QDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSII 136
           Q  R   D+  Y+CV  N  G   S    L VL +       P I  GP+   V      
Sbjct: 68  QPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 137 VFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRS---LQLSDVRLEDGGEYVCEA 189
              C+  G+    + W +    + ++    R+  L S S   LQ+      D G+Y C A
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 190 ENAVG-KISASATLTVQ 205
            N+ G + SA A L V+
Sbjct: 187 TNSAGTRYSAPANLYVR 203

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
           P   R P D T  +G +  F C   GD    + W + G  +   R  V+       S +R
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
           ++      D   Y C A N VG+IS S  LTV
Sbjct: 67  IQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 51  GHPEPTLVWKKNGHPIDFE-NSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108
           G PEPT+ W K+G PI+ E N ++     DG+ L I+   K+D+  Y C+ +N AG +++
Sbjct: 39  GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDA 98
Query: 109 TDAVLRVLVK 118
           T   L+V  K
Sbjct: 99  T-IHLKVFAK 107

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
           P I++GP + T++     + +C   GD +  + W + G   P  + R ++    +LQ+ +
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTV 204
           +R+ D G Y C A ++ G+ S SA L V
Sbjct: 69  LRISDTGTYTCVATSSSGETSWSAVLDV 96

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-KRLGSAMPED----RMSVLPSRSLQ 173
           P I+  P D  V+ G     +C  G  ++ +V+W    G+ M       R+SVL   +L 
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTG-TSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
            ++V ++D G+Y C   N+ G  +ASATL V +K
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLAIQ 85
           P    ++ G++    C       +  + W   NG  +   N +R+ +V    D + L I 
Sbjct: 9   PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLTIY 67
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD 145
           ++   D G Y+CVV    GT+      +++  K      P       G   V  C V   
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 146 AVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRLEDGGEYVCEA 189
              T+ WK  G  +    + R  VL +  LQ+  ++  D G Y CE 
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDG-------- 79
           +Q K++         L C    G P P + WK+      F E  K L   DG        
Sbjct: 5   IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSL---DGRIEVKGQH 60
Query: 80  --TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
             ++L I+D + +D GRY C   +  G  + +   L +   P  I          G+ I 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDGGEYVCEAEN 191
             C V  +   ++HW+R    +P    + L + S      L+++     D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 192 AVG 194
            +G
Sbjct: 180 HIG 182

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV--- 166
           +P+II+   +TT   G + +  C   G+ +  + WKR         G    + R+ V   
Sbjct: 1   QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             S SL + DV+L D G Y CEA + +G    S  L ++
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDG-------- 79
           +Q K++         L C    G P P + WK+      F E  K L   DG        
Sbjct: 5   IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSL---DGRIEVKGQH 60
Query: 80  --TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
             ++L I+D + +D GRY C   +  G  + +   L +   P  I          G+ I 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDGGEYVCEAEN 191
             C V  +   ++HW+R    +P    + L + S      L+++     D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 192 AVG 194
            +G
Sbjct: 180 HIG 182

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV--- 166
           +P+II+   +TT   G + +  C   G+ +  + WKR         G    + R+ V   
Sbjct: 1   QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
             S SL + DV+L D G Y CEA + +G    S  L ++
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 30  QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 85
           QP +S  V  G TA  E     G P P + W ++G  I        ++   DG   L I 
Sbjct: 10  QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFEC 140
              K + GRY     N +G   ST     +LVK     P  ++  +  TV  GS +  + 
Sbjct: 69  AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 141 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDGGEYVCEAENAVGK 195
            V G     V + R G+ + +  +    S+     SL +++   ED G Y   A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 196 ISASATLTVQ 205
            +++A L VQ
Sbjct: 185 ATSTAELLVQ 194

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 30  QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 85
           QP +S  V  G TA  E     G P P + W ++G  I        ++   DG   L I 
Sbjct: 10  QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFEC 140
              K + GRY     N +G   ST     +LVK     P  ++  +  TV  GS +  + 
Sbjct: 69  AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 141 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDGGEYVCEAENAVGK 195
            V G     V + R G+ + +  +    S+     SL +++   ED G Y   A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 196 ISASATLTVQSK 207
            +++A L VQ +
Sbjct: 185 ATSTAELLVQGE 196

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVR 178
           R  +   V  G  + F C   GD    + W    K L SA    R++V P  +L++   +
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 179 LEDGGEYVCEAENAVGKISASATLTVQS 206
           ++D G Y+C A NA G  S  A L V+S
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 80/201 (39%), Gaps = 51/201 (25%)
Query: 44  LECGPPRGHPEPTLVWKK-------NGHPIDFENSKRLRLVDGTNLAIQDSRK---TDDG 93
           L+C  P  +P+P + WKK       N    DF+  +R+      NL      K   +D  
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFD--RRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 94  RYQCVVKNVAGTRESTDAVLRVLVKPYIIRG-----------------PKDTTVSAGSII 136
           +Y C  KN A   E       V++  Y I+G                  KD    AG + 
Sbjct: 178 KYVCTAKNAAVDEE-------VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 137 VFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLSDVRL-------EDGGEYV 186
           +  C  G + +   ++ + G   +  PEDR++    R  + S  RL       ED G Y 
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT----RHNRTSGKRLLFKTTLPEDEGVYT 286
Query: 187 CEAENAVGKISA-SATLTVQS 206
           CE +N VGK    S  LTV S
Sbjct: 287 CEVDNGVGKPQKHSLKLTVVS 307

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 176
           I+  P+  TV  G    F C   G+ V TV W R G  +    R  V  ++   + ++S 
Sbjct: 11  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
           V+  D G Y    EN+ GK  A  TLT+Q
Sbjct: 71  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-LQLS 175
           V P      KD  V  G   V +CSV G  V  + W   G  +   R +     + L + 
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTVQ 205
           D   ED G Y C AENA+G++S SA +TV 
Sbjct: 70  DALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--------MPEDRMSVLPS 169
           KP I+ G +DTTVS+ S+  F     G+   T  W + G A        + ED+      
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF-- 63
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
             L++      D G Y C  +N+ G +S+S  LT+++
Sbjct: 64  --LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 23/190 (12%)
Query: 27  FRVQPK----------SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL 76
           FRV P+          S+ V   D     C P     + T +W  N   +    S RL+L
Sbjct: 104 FRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPV--SPRLQL 159
Query: 77  VDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSAGS 134
            +G   L + +  + D   Y+C  +N    R S   +L VL  P      P +T+  +G 
Sbjct: 160 SNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGE 219
Query: 135 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194
            +   C    +      W   G+     +   +P       ++ + + G Y C+A N+  
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIP-------NITVNNSGSYTCQAHNSDT 272
Query: 195 KISASATLTV 204
            ++ +   T+
Sbjct: 273 GLNRTTVTTI 282

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 176
           I+  P+  TV  G    F C   G+ V TV W R G  +    R  V  ++   + ++S 
Sbjct: 17  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
           V+  D G Y    EN+ GK  A  TLT+Q
Sbjct: 77  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 173
           P+I+  P+D  +S G +   +C      + +V W       L  A    R+SVL   +L 
Sbjct: 8   PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
            S V L D G Y C   N  G  +ASA L V S
Sbjct: 66  FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-KRLGSAMPED----RMSVLPSRSLQ 173
           P I+  P D  V+ G     +C     ++ +V W    G+ M       R++VL   +L 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTV 204
            ++V ++D G Y C   N+VG  +ASATL V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 173
           P+I+  P+D  +S G +   +C      + +V W       L  A    R+SVL   +L 
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
            S V L D G Y C   N  G  +ASA L V +
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMPEDRMSVLPSRSLQLSD 176
           P I +GP + TV+     V  C   G  V T+ W++ G   +  + R+  L +  LQ+  
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
            +L D G Y C A    G+ + SA + VQ
Sbjct: 69  AKLGDTGRYTCIASTPSGEATWSAYIEVQ 97

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT---NL 82
           F  +P+S++V  GD+  LEC      P P L WK+N   + F N+ R+ L  D T    L
Sbjct: 18  FIYKPQSKKVLEGDSVKLECQ-ISAIPPPKLFWKRNNEMVQF-NTDRISLYQDNTGRVTL 75
Query: 83  AIQDSRKTDDGRYQCVVKNVAG 104
            I+D  K D G Y     N AG
Sbjct: 76  LIKDVNKKDAGWYTVSAVNEAG 97

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 18/168 (10%)
Query: 50  RGHPEPTLVWKKNGHPIDFENSKRLRLVDG----------TNLAIQDSRKTDDGRYQCVV 99
           +G P P + W ++G  ++  +S + ++  G          + L I   + +D G+YQC+V
Sbjct: 29  QGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV 87
Query: 100 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSA 158
                T  S    + +   PY +  P+D TV+A +     C   G    + + W  L  A
Sbjct: 88  FLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLW--LQDA 145
Query: 159 MP-EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISASATLTV 204
           +P        P RSL +    L     + CEA NA G   S +AT+TV
Sbjct: 146 VPLATAPGHGPQRSLHVPG--LNKTSSFSCEAHNAKGVTTSRTATITV 191

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 103 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG 156
           A   E+ DA L  +      VKPY  +   D  V  GS   F+C V G     V W +  
Sbjct: 20  ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 157 SAMPEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
           + + E R   +      + SL +S+V  +D  +Y C+A N++G+ + +A L V++
Sbjct: 80  NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 103 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG 156
           A   E+ DA L  +      VKPY  +   D  V  GS   F+C V G     V W +  
Sbjct: 20  ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 157 SAMPEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
           + + E R   +      + SL +S+V  +D  +Y C+A N++G+ + +A L V++
Sbjct: 80  NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134

>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20 Structures Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
          F+  P  Q    G+ A++ C      P PT++WK  G  +  +   R  ++    L I+ 
Sbjct: 4  FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62
Query: 87 SRKTDDGRYQC 97
           +KTD+G Y+C
Sbjct: 63 IKKTDEGTYRC 73

>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of Coxsackie & Adenovirus Receptor From Mouse (Mcar) Length = 214

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 77  VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSII 136
           ++ TNL +     +D G YQC VK   G   +   +L VLVKP   R   D +   G+  
Sbjct: 86  INVTNLQL-----SDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDF 139
Query: 137 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
             +C    G   L   W++L  +  MP   ++ + S  + + +   E  G Y C  +N V
Sbjct: 140 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199
Query: 194 G 194
           G
Sbjct: 200 G 200

>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And Adenovirus Receptor, Car Length = 225

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 77  VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSII 136
           ++ TNL +     +D G YQC VK   G   +   +L VLVKP   R   D +   G+  
Sbjct: 88  INVTNLQL-----SDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 141
Query: 137 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
             +C    G   L   W++L  +  MP   ++ + S  + + +   E  G Y C  +N V
Sbjct: 142 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
Query: 194 G 194
           G
Sbjct: 202 G 202

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 174
           P I +  KD T   G      C + G  +  + W R G  + + R   + S     +L +
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
                ED G Y C A N VG++  S+ L +Q+
Sbjct: 68  MTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-----LAIQ 85
           P    V+ G    L C    G  EP + W K+G  +  +N  +L +          L+++
Sbjct: 9   PVKLTVSQGQPVKLNCSV-EGXEEPDIQWVKDGAVV--QNLDQLYIPVSEQHWIGFLSLK 65
Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFEC-SVGG 144
              ++D GRY C V++   T  S    L V   P+    PKD  V   +     C +VG 
Sbjct: 66  SVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGP 125
Query: 145 DAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA 200
              +T+ W R    +G   P   +         L+   +     + CEA N  G +++S 
Sbjct: 126 PEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQSTXFSCEAHNLKG-LASSR 175
Query: 201 TLTVQ 205
           T TV 
Sbjct: 176 TATVH 180

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT--NLA 83
            P    V+ G+ A L C    G P PT+ W K G  +    D   S R+ L  G+   L 
Sbjct: 15  HPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 84  IQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV 115
           I   RK+  D+G Y CV +N  G   S DA L V
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 59  WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
           W KNG     E +   +        I   R  D G Y CV   V+  +   +A + V   
Sbjct: 39  WTKNG----VELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK--ANATIEVKAA 92
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSL 172
           P I    +    + G   +  C   G       W++  + + E+      R  ++   + 
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 173 -QLSDVRL---EDGGEYVCEAENAVGKISASATLTVQ 205
            +L+ V L   ED GEY C A N++G  S S  L V+
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----S 171
            +P+ ++ P D TV  G +   +C V G     + W+  G  +  D    +  R     S
Sbjct: 8   FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           L +  V   D G Y C A N  G+ S S  L V +K
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.98
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.98
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.97
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.97
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.97
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.97
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.97
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.97
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.97
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.97
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.97
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.96
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.96
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.96
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.96
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.96
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.96
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.96
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.96
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.96
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.96
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.95
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.95
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.95
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.95
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.95
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.95
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.95
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.95
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.95
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.95
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.95
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.95
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.95
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.95
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.94
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.94
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.94
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.94
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.94
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.94
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.94
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.94
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.94
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.94
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.94
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.94
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.94
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.94
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.94
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.93
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.93
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.93
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.93
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.93
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.93
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.93
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.92
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.92
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.92
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.92
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.92
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.92
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.92
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.92
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.92
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.92
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.92
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.92
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.92
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.92
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.92
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.92
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.92
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.91
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.91
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.91
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.91
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.91
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.91
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.91
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.91
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.91
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.91
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.91
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.91
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.91
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.91
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.91
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.91
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.91
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.9
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.9
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.9
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.9
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.9
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.9
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.9
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.9
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.9
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.9
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.9
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.9
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.9
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.9
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.9
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.9
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.9
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.9
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.9
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.9
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.9
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.9
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.9
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.9
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.9
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.89
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.89
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.89
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.89
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.89
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.89
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.89
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.89
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.89
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.89
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.89
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.89
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.88
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.88
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.88
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.88
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.88
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.88
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.88
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.88
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.87
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.87
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.87
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.87
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.87
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.87
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.87
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.87
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.87
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.86
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.86
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.86
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.86
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.86
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.86
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.86
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.86
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.85
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.85
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.85
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.85
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.85
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.84
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.84
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.84
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.84
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.84
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.84
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.83
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.83
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.83
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.82
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.82
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.81
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.81
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.81
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.81
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.81
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.81
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.8
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.8
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.8
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.8
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.8
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.8
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.8
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.8
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.79
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.79
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.77
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.77
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.76
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.76
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.75
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.75
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.75
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.75
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.74
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.74
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.73
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.73
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.72
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.72
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.72
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.72
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.71
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.71
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.7
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.7
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.7
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.7
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.7
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.69
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.69
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.68
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.68
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.68
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.68
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.68
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.68
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.68
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.68
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.67
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.67
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.67
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.66
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.66
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.66
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.65
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.65
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.65
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.65
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.64
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.64
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.64
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.64
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.64
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.63
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.63
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.63
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.62
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.62
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.62
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.62
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.61
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.61
1he7_A	126	High affinity nerve growth factor receptor; transf	99.61
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.61
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.61
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.6
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.6
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.6
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.6
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.59
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.59
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.59
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.59
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.59
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.59
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.59
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.59
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.58
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.58
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.58
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.58
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.58
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.58
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.57
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.57
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.57
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.57
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.57
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.57
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.57
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.57
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.57
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.56
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.55
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.55
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.55
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.55
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.54
2ens_A	96	Advanced glycosylation END product-specific recept	99.54
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.54
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.54
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.53
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.53
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.53
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.52
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.52
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.52
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.52
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.52
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.52
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.51
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.51
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.51
2ens_A	96	Advanced glycosylation END product-specific recept	99.51
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.5
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.5
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.5
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.5
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.5
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.5
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.5
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.5
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.49
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.49
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.49
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.49
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.49
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.49
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.49
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.49
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.49
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.48
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.48
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.48
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.48
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.48
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.48
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.47
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.47
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.47
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.47
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.47
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.47
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.46
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.46
1he7_A	126	High affinity nerve growth factor receptor; transf	99.46
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.46
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.46
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.46
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.45
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.44
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.44
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.44
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.43
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.43
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.43
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.43
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.43
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.42
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.42
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.41
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.41
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.41
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.41
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.4
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.4
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.4
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.4
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.4
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.39
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.39
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.39
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.39
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.38
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.38
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.38
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.37
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.35
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.35
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.35
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.34
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.34
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.34
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.34
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.33
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.33
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.32
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.32
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.32
3khq_A	133	B-cell antigen receptor complex-associated protei	99.31
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.31
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	99.31
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.3
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.3
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.29
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.29
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.29
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.29
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.28
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.28
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.28
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.28
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.28
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.28
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.27
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.27
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.27
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.27
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.27
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.27
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.27
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.26
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.26
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.25
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.25
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.24
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.24
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.23
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.23
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.23
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.23
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	99.23
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.22
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.22
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.22
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.22
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.21
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.21
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.21
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.2
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.2
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.2
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.2
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.19
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.19
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.19
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.19
3khq_A	133	B-cell antigen receptor complex-associated protei	99.19
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.19
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.19
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	99.18
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.18
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.18
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.18
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.18
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	99.18
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.18

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.98  E-value=7.1e-31  Score=178.94  Aligned_cols=183  Identities=28%  Similarity=0.479  Sum_probs=150.7

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..++... ++..|.|.+++.+|+|.|+|.+.+.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLF-DTRYSIRENGQLLTILSVEDSDDGIYCCTANNG   84 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCTT-CTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred             CceeecCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEcccc-CccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence            4667777778889999999999988 67788899999999887432 3344443 3457999999999999999999988


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLED  181 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d  181 (216)
                      .+........+.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... +......+.|.|.++..+|
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  164 (192)
T 2iep_A           85 VGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKED  164 (192)
T ss_dssp             SSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGG
T ss_pred             CCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhh
Confidence            776545567888888898888888888999999999999999999999999999887644 3444566789999999999


Q ss_pred             CeEEEEEEEcCCcce-EEEEEEEEEecc
Q psy573          182 GGEYVCEAENAVGKI-SASATLTVQSKY  208 (216)
Q Consensus       182 ~g~y~C~~~n~~~~~-~~~~~l~v~~~p  208 (216)
                      +|.|+|.+.|..|.. +..+.|.|..+|
T Consensus       165 ~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          165 AGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            999999999999986 556888887765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.98  E-value=5.8e-30  Score=177.20  Aligned_cols=184  Identities=30%  Similarity=0.543  Sum_probs=149.8

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecC--cEEEEcccCC-CCCceEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDG--TNLAIQDSRK-TDDGRYQC   97 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~--~~l~i~~~~~-~d~g~y~C   97 (216)
                      .+|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++..  ..+  ..|.|.++.. +|+|.|+|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSG-TQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCT-TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCC-CcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            46888899999999999999999998 6788889999999998852 2233332  223  4799999999 99999999


Q ss_pred             EEEcCCCCcccceeEEEEeec-------ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC
Q psy573           98 VVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS  169 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~  169 (216)
                      .+.+..+......+.|.|...       |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .......
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  162 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD  162 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET
T ss_pred             EEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC
Confidence            999987764466678888765       67777777788899999999999999999999999999887642 2223456


Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecc
Q psy573          170 RSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTVQSKY  208 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~-~~l~v~~~p  208 (216)
                      +.|.|.++..+|.|.|+|.+.|..|..... +.|.|...+
T Consensus       163 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          163 GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            789999999999999999999999997654 788888654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.97  E-value=9.2e-30  Score=173.94  Aligned_cols=177  Identities=25%  Similarity=0.418  Sum_probs=146.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCC-CCCCCeeEEeeCCEEeccccCceEEE--ec--------CcEEEEcccCCCCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNGHPIDFENSKRLRL--VD--------GTNLAIQDSRKTDD   92 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~--~~--------~~~l~i~~~~~~d~   92 (216)
                      +|.|...|....+.+|+.+.|.|.+ . +.|.+.+.|++++..+......+...  ..        .+.|.|.+++.+|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEE-EEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhheEEecCCcEEEeccc-ccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            5778888999999999999999998 5 77888999999999885432222222  22        25799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCe
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRS  171 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~  171 (216)
                      |.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... .....
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~~~  159 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQRS  159 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCCEE
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCCCe
Confidence            99999999977655455688999999988888888889999999999999999999 99999999887644322 34567


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGKIS-ASATLTV  204 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~~~-~~~~l~v  204 (216)
                      |.|.++.  |+|.|+|.+.|..|... ..+.|.|
T Consensus       160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999887  78999999999999875 7888887

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.97  E-value=8.8e-30  Score=173.04  Aligned_cols=182  Identities=26%  Similarity=0.445  Sum_probs=144.6

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.|...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....++.|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            4677778888999999999999998 677888999999998886556667777777889999999999999999999876


Q ss_pred             CCc-ccceeEEEEeecceEEeCCC--ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-eee-cCCeEEEecCC
Q psy573          104 GTR-ESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVL-PSRSLQLSDVR  178 (216)
Q Consensus       104 ~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~-~~~~l~i~~~~  178 (216)
                      +.. ....+.+.+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+..... ... ....|.|.++.
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence            432 23456677777777765544  34666899999999999899999999999988765432 222 35679999999


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          179 LEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .+|+|.|+|.+.|..|....++.|.|..
T Consensus       161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            9999999999999999988888887753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.97  E-value=3.2e-29  Score=169.42  Aligned_cols=176  Identities=24%  Similarity=0.387  Sum_probs=140.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ++.|...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............   .+.|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            3566777888899999999999998 67788899999999987543222222222   2579999999999999999999


Q ss_pred             cCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCeEEEecCCC
Q psy573          101 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  179 (216)
                      +..+...+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+.....   ....|.|.++  
T Consensus        81 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~~~L~i~~~--  155 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SPSVLNVTGV--  155 (182)
T ss_dssp             SCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SSEEEEECCC--
T ss_pred             cCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---CceEEEEecc--
Confidence            876655566788999999998888888889999999999999999999 9999999987754322   5567888887  


Q ss_pred             CCCeEEEEEEEcCCcceE-EEEEEEEE
Q psy573          180 EDGGEYVCEAENAVGKIS-ASATLTVQ  205 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~~~-~~~~l~v~  205 (216)
                      +|+|.|+|.+.|..|... .++.|.|+
T Consensus       156 ~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          156 TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            589999999999999864 47777663

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.97  E-value=1.5e-29  Score=172.68  Aligned_cols=181  Identities=27%  Similarity=0.415  Sum_probs=145.5

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEec-CcEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVD-GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....  ..+..... ...|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            46788888889999999999999998 677888999999998875433  22222222 347999999999999999999


Q ss_pred             EcCCCCcccceeEEEEe---ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeE
Q psy573          100 KNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL  172 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l  172 (216)
                      .+..+.. .....+.|.   .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... +......   ..|
T Consensus        83 ~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (194)
T 2a38_A           83 TNGSGQA-TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSL  161 (194)
T ss_dssp             EETTEEE-EEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEE
T ss_pred             EcCCceE-eEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEE
Confidence            9877654 345567776   5667777777788999999999999999999999999999887643 2322222   269


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .|.++..+|.|.|+|.+.|..|....++.|.|+
T Consensus       162 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          162 LIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            999999999999999999999998888888774

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.97  E-value=6.9e-29  Score=168.98  Aligned_cols=179  Identities=23%  Similarity=0.442  Sum_probs=144.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEee-CCEEeccccCceEEEe----cCcEEEEcccCCCCCceEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~-~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ++.+...|....+.+|+.++|.|.+ .+.+ .+.+.|++ ++..+... ..++...    ....|.|.+++.+|+|.|+|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCB-SSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccCC-CCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence            4567778888899999999999998 5544 78999999 88777432 2333332    34589999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---CCCeeeecCCeEEE
Q psy573           98 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQL  174 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i  174 (216)
                      .+.+..+......+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.   ..+.....++.|.|
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (191)
T 1epf_A           80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (191)
T ss_dssp             EEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEE
T ss_pred             EEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEE
Confidence            999987544566778888888988888888889999999999999999999999999998764   23444556678999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          175 SDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .++..+|.|.|+|.+.|..+.......+.|
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            999999999999999999876555555544

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.97  E-value=2.9e-29  Score=171.67  Aligned_cols=181  Identities=24%  Similarity=0.375  Sum_probs=144.2

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecCc--EEEEcccCCCCCceEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDGT--NLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~g~y~C~   98 (216)
                      .+|.|...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... .++..  ..++  .|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCS-SSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCC-CcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            36788888888999999999999998 677889999999999875322 22222  2333  899999999999999999


Q ss_pred             EEcCCCCcccceeEEEEeecceEEeCC-----CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cC
Q psy573           99 VKNVAGTRESTDAVLRVLVKPYIIRGP-----KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PS  169 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~  169 (216)
                      +.+..+.. ...+.|.|..+|.+....     ....+..|+.+.|.|.+.+.|.+.+.|++++..+... +....   ..
T Consensus        81 ~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~  159 (197)
T 2j8h_A           81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF  159 (197)
T ss_dssp             EEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSE
T ss_pred             EEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCc
Confidence            99876654 556778887777654332     3346788999999999999999999999999877543 22222   23


Q ss_pred             CeEEEec-CCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          170 RSLQLSD-VRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       170 ~~l~i~~-~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ..|.|.+ +..+|.|.|+|.+.|..|..+.++.|.|.+
T Consensus       160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            5789999 999999999999999999999998888763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.97  E-value=3.4e-29  Score=173.34  Aligned_cols=186  Identities=27%  Similarity=0.444  Sum_probs=143.0

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--cCcEEEEccc-CCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNLAIQDS-RKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~-~~~d~g~y~C~~   99 (216)
                      .+|.|...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........  .+..|.|.++ ..+|+|.|+|.+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            46888889999999999999999998 6778899999999998743221111111  2346999999 599999999999


Q ss_pred             EcCCCCcccceeEEEEeec-------ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC----Ceeee-
Q psy573          100 KNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVL-  167 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~-  167 (216)
                      .+..+.. ...+.|.|...       |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...    +.... 
T Consensus        84 ~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~  162 (212)
T 2yd6_A           84 SNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR  162 (212)
T ss_dssp             EETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred             EcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence            9877653 45667777654       56666777778889999999999999999999999999877543    22222 


Q ss_pred             --cCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEEeccee
Q psy573          168 --PSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQSKYLK  210 (216)
Q Consensus       168 --~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v~~~p~~  210 (216)
                        ....|.|.++..+|.|.|+|.|.|..|.. +..+.|.+...+.+
T Consensus       163 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          163 SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence              23679999999999999999999999984 45678888876654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=1.3e-28  Score=177.56  Aligned_cols=191  Identities=24%  Similarity=0.441  Sum_probs=151.9

Q ss_pred             hhhceeeEEeeccceEecc-cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCC
Q psy573           13 EEKKKLKIEMLREEFRVQP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKT   90 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~-~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~   90 (216)
                      +..+.|.|... |.+...+ ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+..... ...|.|.+++.+
T Consensus        88 ~~~~~l~V~~~-p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  165 (284)
T 2rik_A           88 SCSAQLGVQEP-PRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE  165 (284)
T ss_dssp             EEEEEEEEECC-CEEEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGG
T ss_pred             EEEEEEEccCC-CcccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcc
Confidence            34566666554 4444443 34678999999999998 67788999999999988544333333332 357999999999


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeeec-
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLP-  168 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~-  168 (216)
                      |+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..... 
T Consensus       166 d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  244 (284)
T 2rik_A          166 DSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE  244 (284)
T ss_dssp             GCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEE
T ss_pred             cCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEc
Confidence            9999999999987764 55678889888888777777889999999999999999999999999998876432 22222 


Q ss_pred             --CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          169 --SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       169 --~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                        ...|.|.++..+|.|.|+|.+.|..|....++.|.|++
T Consensus       245 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence              14799999999999999999999999999999888763

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=4.7e-28  Score=174.59  Aligned_cols=188  Identities=27%  Similarity=0.484  Sum_probs=153.3

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .||.+...|.+..+.+|+.++|.|.+ .+.|.+.+.|++++..+......+..... ...|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            36788888999999999999999998 67788899999999988544333333333 36899999999999999999998


Q ss_pred             CCCCcccceeEEEEeecceEEeCCC-ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-eee---cCCeEEEec
Q psy573          102 VAGTRESTDAVLRVLVKPYIIRGPK-DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVL---PSRSLQLSD  176 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~---~~~~l~i~~  176 (216)
                      ..+.. ...+.|.|..+|.+..... ...+..|+.+.|.|.+.+.|.+.+.|++++..+..... ...   ....|.|.+
T Consensus        83 ~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (284)
T 2rik_A           83 VAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN  161 (284)
T ss_dssp             TTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECS
T ss_pred             CCceE-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECC
Confidence            77654 5567888888887765544 44688999999999999999999999999988764432 211   235699999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          177 VRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      +..+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       162 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  197 (284)
T 2rik_A          162 LSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK  197 (284)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCS
T ss_pred             CCcccCEEEEEEEEcCCCceeEEEEEEEecCCccee
Confidence            999999999999999999999999999998876543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=168.77  Aligned_cols=180  Identities=19%  Similarity=0.373  Sum_probs=144.4

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .++....+.   .|.|.+++.+|+|.|+|.+
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQS--RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCC--SSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCC--ccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            46788888889999999999999998 67788899999999988433  333333332   7999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecceEEeC---CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeeecC---CeE
Q psy573          100 KNVAGTRESTDAVLRVLVKPYIIRG---PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLPS---RSL  172 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~---~~l  172 (216)
                      .+..+.. .....+.|..+|.+...   +....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ......   ..|
T Consensus        83 ~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (197)
T 3lcy_A           83 TNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL  161 (197)
T ss_dssp             ECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred             ECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEE
Confidence            9877654 44567777777765432   234467889999999999999999999999998876543 333222   579


Q ss_pred             EEecCCC-CCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          173 QLSDVRL-EDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       173 ~i~~~~~-~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .|.++.. +|.|.|+|.+.|..|.....+.|.|.+
T Consensus       162 ~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          162 VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9999985 899999999999999999999988875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=5.8e-29  Score=179.90  Aligned_cols=192  Identities=27%  Similarity=0.461  Sum_probs=153.0

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....++.|.|.++..+|+
T Consensus        90 ~~~~~l~v~~-~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  167 (291)
T 1qz1_A           90 EATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE  167 (291)
T ss_dssp             EEEEEEEEEC-CSEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGC
T ss_pred             EEEEEEEeec-cccccCCCCcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccC
Confidence            3344555443 4677777888889999999999998 6778889999999988755555566666778899999999999


Q ss_pred             ceEEEEEEcCCC-CcccceeEEEEeecceEEeCCC--ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-----Ce
Q psy573           93 GRYQCVVKNVAG-TRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RM  164 (216)
Q Consensus        93 g~y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----~~  164 (216)
                      |.|+|.+.+..+ ......+.+.+..+|.+.....  ...+..|+.+.|.|.+.+.|.|.+.|++++..+...     +.
T Consensus       168 G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~  247 (291)
T 1qz1_A          168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKH  247 (291)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSE
T ss_pred             eEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcce
Confidence            999999998653 3234456777778887765543  346778999999999999999999999999887644     22


Q ss_pred             eee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          165 SVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       165 ~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ... ....|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus       248 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          248 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            222 345799999999999999999999999999999998875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=5.4e-29  Score=180.06  Aligned_cols=194  Identities=25%  Similarity=0.421  Sum_probs=147.8

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....++.|.|.++..+|+|
T Consensus        89 ~~~~l~v~~-~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  166 (291)
T 2wim_A           89 ATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG  166 (291)
T ss_dssp             EEEEEEEEC-CCBCCSCCCSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCE
T ss_pred             EEEEEEecC-CcceEeCCCChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCE
Confidence            344555544 3566666777889999999999998 67788899999999887655566677777788999999999999


Q ss_pred             eEEEEEEcCCCC-cccceeEEEEeecceEEeCCC--ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee-c
Q psy573           94 RYQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL-P  168 (216)
Q Consensus        94 ~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~-~  168 (216)
                      .|+|.+.+..+. .....+.+.+..+|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .... .
T Consensus       167 ~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~  246 (291)
T 2wim_A          167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS  246 (291)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECST
T ss_pred             EEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCC
Confidence            999999987643 223456677777776655443  3366789999999999999999999999998876543 2222 3


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      ...|.|.++..+|+|.|+|.+.|..|....++.|.|..++.
T Consensus       247 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             TCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             ccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            46799999999999999999999999999999999887653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=8.7e-29  Score=180.20  Aligned_cols=197  Identities=28%  Similarity=0.447  Sum_probs=146.7

Q ss_pred             hhhceeeEEeec------cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc-cCceEEEecCcEEEEc
Q psy573           13 EEKKKLKIEMLR------EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE-NSKRLRLVDGTNLAIQ   85 (216)
Q Consensus        13 ~~~~~l~v~~~~------~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~l~i~   85 (216)
                      +..+.|.|...+      |.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+.....++.|.|.
T Consensus        91 ~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~  169 (304)
T 2yd9_A           91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE  169 (304)
T ss_dssp             CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEEC
T ss_pred             EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEc
Confidence            445666665542      566777778889999999999998 78888999999999987543 2334555667789999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEe---ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED  162 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~  162 (216)
                      +++.+|+|.|+|.+.+..+........+.|.   .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...
T Consensus       170 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCS
T ss_pred             cCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCc
Confidence            9999999999999999877554333455553   5677777777778899999999999999999999999999887654


Q ss_pred             CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          163 RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       163 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      .........|.+.++  +|+|.|+|.|.|..|....++.|.|.+++.+..
T Consensus       250 ~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~  297 (304)
T 2yd9_A          250 DDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAGT  297 (304)
T ss_dssp             SSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---------
T ss_pred             ccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCccccc
Confidence            322222234555554  699999999999999999999999998876554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.7e-28  Score=169.54  Aligned_cols=173  Identities=23%  Similarity=0.320  Sum_probs=143.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...        .+..|.|.+++.+|+|.|+|.+.+..
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~   88 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNNF   88 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcCC
Confidence            5678888999999999999999998 77888899999999887432        24689999999999999999999887


Q ss_pred             CCcccceeEEEEeec---------------ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec
Q psy573          104 GTRESTDAVLRVLVK---------------PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP  168 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  168 (216)
                      +...+..+.|.|...               |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...     .
T Consensus        89 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----~  163 (218)
T 3k0w_A           89 TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----T  163 (218)
T ss_dssp             CCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----C
T ss_pred             CCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----C
Confidence            655455677777655               56777777788999999999999999999999999999877643     3


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEeccee
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKYLK  210 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p~~  210 (216)
                      ...|.|.++..+|.|.|+|.+.|..|. .+..+.|.|.+.+.+
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL  206 (218)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred             CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence            467999999999999999999998887 666788888765433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.97  E-value=5.3e-29  Score=172.15  Aligned_cols=195  Identities=29%  Similarity=0.493  Sum_probs=144.6

Q ss_pred             eeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC---ceEEEecCcEE-----EEcccCC
Q psy573           18 LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS---KRLRLVDGTNL-----AIQDSRK   89 (216)
Q Consensus        18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~l-----~i~~~~~   89 (216)
                      |.+...+|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....   .......++.+     .|.+++.
T Consensus         3 l~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   81 (212)
T 2v9r_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR   81 (212)
T ss_dssp             ---CCEEEEEEECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCC
T ss_pred             cCcccCCcceecCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCc
Confidence            5566678899999999999999999999998 6778889999999988743221   12223333333     4456689


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec-ceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCC-Ceee
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSV  166 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~-~~~~  166 (216)
                      +|+|.|+|.+.+..+......+.+.|... +.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+... ....
T Consensus        82 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~  161 (212)
T 2v9r_A           82 PDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT  161 (212)
T ss_dssp             CSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEE
T ss_pred             ccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEE
Confidence            99999999999877654455667777653 344455666788999999999998 88899999999999887643 2233


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecceeeec
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISA-SATLTVQSKYLKVIH  213 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~-~~~l~v~~~p~~~~~  213 (216)
                      ..++.|.|.++..+|.|.|+|.+.|..|.... .+.|.|..+|.+...
T Consensus       162 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~  209 (212)
T 2v9r_A          162 IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA  209 (212)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred             ccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence            45678999999999999999999999998554 489999998876643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.97  E-value=4.3e-28  Score=165.02  Aligned_cols=173  Identities=22%  Similarity=0.384  Sum_probs=137.7

Q ss_pred             cceEecccceEEec-CCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAA-GDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~-G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+.. +....+.+ |+.+.|.|.+ .+.+.  +.+.|++++..+......    ..+..|.|.+++.+|+|.|+|.+.+
T Consensus         4 P~i~~-~~~~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n   77 (190)
T 2wv3_A            4 PRIVT-SEEVIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATRKN----ASNMEYRINKPRAEDSGEYHCVYHF   77 (190)
T ss_dssp             CEEEE-CCCEECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCCBC----CSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             Ccccc-cceEEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccceE----eccEEEEEecCCcccCEEEEEEEEe
Confidence            44444 44566667 9999999998 55565  789999999987432211    1446899999999999999999998


Q ss_pred             CCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEee--CCccC----CCCCeeeecC---CeE
Q psy573          102 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR--LGSAM----PEDRMSVLPS---RSL  172 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~--~~~~~----~~~~~~~~~~---~~l  172 (216)
                      . +. ....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++  ++..+    ...+......   ..|
T Consensus        78 ~-~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L  155 (190)
T 2wv3_A           78 V-SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL  155 (190)
T ss_dssp             T-TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEE
T ss_pred             C-Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEE
Confidence            7 44 356788899999988877777889999999999999999999999999  56544    2233333322   369


Q ss_pred             EEecCC-CCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          173 QLSDVR-LEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       173 ~i~~~~-~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .|.++. .+|.|.|+|.+.|..|....++.|.|.
T Consensus       156 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          156 NIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            999999 799999999999999999999888876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.96  E-value=1.7e-28  Score=185.07  Aligned_cols=193  Identities=31%  Similarity=0.510  Sum_probs=158.9

Q ss_pred             hhhceeeEEeec-----cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc
Q psy573           13 EEKKKLKIEMLR-----EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS   87 (216)
Q Consensus        13 ~~~~~l~v~~~~-----~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~   87 (216)
                      +..+.+.|...+     +.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. .........++.|.|.++
T Consensus       205 ~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~L~i~~~  282 (403)
T 3laf_A          205 GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQL-RSKKYSLLGGSNLLISNV  282 (403)
T ss_dssp             CCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCC-SSSSEEEETTTEEEECSC
T ss_pred             ccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEECCeeccC-CCceEEECCccEEEEeCC
Confidence            344566665432     234456667889999999999998 6778889999999988743 233455566788999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceee
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSV  166 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~  166 (216)
                      ..+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....
T Consensus       283 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~  361 (403)
T 3laf_A          283 TDDDSGTYTCVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI  361 (403)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEE
T ss_pred             CHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEE
Confidence            9999999999999887654 5677888999998888888888999999999999999999999999999887543 4444


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ...+.|.|.++..+|.|.|+|.|.|..|....++.|.|.++|
T Consensus       362 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          362 VGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             ETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            567889999999999999999999999999999999988765

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.96  E-value=1.2e-28  Score=171.01  Aligned_cols=186  Identities=30%  Similarity=0.515  Sum_probs=143.0

Q ss_pred             eeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEecCcEE----EEcccCCCC
Q psy573           18 LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNL----AIQDSRKTD   91 (216)
Q Consensus        18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~l----~i~~~~~~d   91 (216)
                      +.....+|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  ..+.. ..++.+    .|.+++.+|
T Consensus         3 ~~~~~~~P~i~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d   80 (217)
T 2vr9_A            3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQD   80 (217)
T ss_dssp             ---CCCCCEEEECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEE-CTTSCEEESSCCBSSSCBC
T ss_pred             cccccCCCEEecCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEE-ecCCceEEEEEeccCCccc
Confidence            3445567889999999999999999999998 677888999999999875432  22222 223333    678899999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEee-cceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCC--------
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPE--------  161 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~--------  161 (216)
                      +|.|+|.+.+..+........+.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+..        
T Consensus        81 ~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  160 (217)
T 2vr9_A           81 GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA  160 (217)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred             CceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence            99999999987765544456677665 4455556667788999999999999 8889999999999987652        


Q ss_pred             -CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          162 -DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       162 -~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                       .+......+.|.|.++..+|.|.|+|.+.|..|....+..+.+.
T Consensus       161 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             CCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence             23344456789999999999999999999999987666544443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.96  E-value=4e-28  Score=190.73  Aligned_cols=197  Identities=23%  Similarity=0.420  Sum_probs=157.8

Q ss_pred             hhceeeEEeeccceEeccc-ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCC
Q psy573           14 EKKKLKIEMLREEFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTD   91 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~-~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d   91 (216)
                      ..+.|.|.. +|.+...+. ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+..... ...|.|.+++.+|
T Consensus       281 ~~~~l~V~~-~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D  358 (570)
T 3b43_A          281 CSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED  358 (570)
T ss_dssp             EEEEECCBC-CCEEEECCCSBCCEESSCEEEEEEEE-ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGG
T ss_pred             EEEEEEeec-CCcccccCCCccEEcCCCcEEEEEEE-eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCccc
Confidence            345555544 355554433 3568899999999998 78899999999999988544333333332 3579999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec-C
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP-S  169 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~-~  169 (216)
                      +|.|+|.+.|..|.. .....|.|..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... +..... +
T Consensus       359 ~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~  437 (570)
T 3b43_A          359 SGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSEN  437 (570)
T ss_dssp             CEEEEEEEEBTTBCC-EEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEET
T ss_pred             CEEEEEEEEeCCCEE-EEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcC
Confidence            999999999988865 4567888999998888888888899999999999999999999999999887643 333322 2


Q ss_pred             --CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          170 --RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       170 --~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                        ..|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.+...
T Consensus       438 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~  483 (570)
T 3b43_A          438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK  483 (570)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEEC
T ss_pred             CEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCccccc
Confidence              46999999999999999999999999999999999998877653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=7.2e-28  Score=165.06  Aligned_cols=177  Identities=28%  Similarity=0.435  Sum_probs=138.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceE-EEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRL-RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      .+..+.+.+|+.+.|.|.+..+.|. +.+.|++++..+......+. ....++.|.|.+++.+|+|.|+|.+.+..+...
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            4467889999999999993267777 89999999877643333333 333567899999999999999999998654332


Q ss_pred             c--ceeEEEEe-------ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCC
Q psy573          108 S--TDAVLRVL-------VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR  178 (216)
Q Consensus       108 ~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~  178 (216)
                      .  ....+.+.       .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+............|.|.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~  173 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ  173 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCC
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCC
Confidence            2  22333332       34555555557788999999999999999999999999999877654444566789999999


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          179 LEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .+|.|.|+|.+.|..|....++.|.|++
T Consensus       174 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          174 LEDEGIYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence            9999999999999999999999888863

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.96  E-value=3.4e-28  Score=182.56  Aligned_cols=172  Identities=29%  Similarity=0.500  Sum_probs=143.0

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-EEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-HPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++ ..+..   .......++.|.|.+++.+|+|.|+|.+.|..|.. .
T Consensus       211 ~~~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~  285 (384)
T 3kld_A          211 FPETVPAEKGTTVKLECFA-LGNPVPTILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-V  285 (384)
T ss_dssp             CCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTCCCCCT---TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CCCceEecCCCcEEEEEEE-eecCCCcEEEEeCCCccccc---cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-E
Confidence            3556788999999999998 78899999999954 34321   11222345689999999999999999999988765 4


Q ss_pred             ceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEE
Q psy573          109 TDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       109 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      ....|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|+|.|+|.
T Consensus       286 ~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~  365 (384)
T 3kld_A          286 AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV  365 (384)
T ss_dssp             EEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEE
T ss_pred             EEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEE
Confidence            45688888889888888888999999999999999999999999999998865443344567899999999999999999


Q ss_pred             EEcCCcceEEEEEEEEEe
Q psy573          189 AENAVGKISASATLTVQS  206 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v~~  206 (216)
                      |.|..|....++.|.|.+
T Consensus       366 A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          366 AENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EEETTEEEEEEEEEEEC-
T ss_pred             EEeCCceEEeceEEEEec
Confidence            999999999999998864

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.96  E-value=7.4e-28  Score=165.85  Aligned_cols=176  Identities=11%  Similarity=0.154  Sum_probs=129.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-Cc--EEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GT--NLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~--~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.|.. +....+.+|+.+.|.|.+..+.|.+.+.|++++..+......+..... ++  +|.|.+++.+|+|.|+|.+.|
T Consensus         4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            44433 346789999999999998556799999999999999654444444332 12  699999999999999999998


Q ss_pred             CCCCcccceeEEEEe---------------------ecceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccC
Q psy573          102 VAGTRESTDAVLRVL---------------------VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAM  159 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~  159 (216)
                        +... ....+.+.                     .+|.+.... ...+.+|+.+.|.|.+.+. |.|.+.|+|++..+
T Consensus        83 --g~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A           83 --GKAT-NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             --TTEE-EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             --CCeE-EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence              3221 12222110                     145544333 3678899999999999998 99999999999887


Q ss_pred             CCCCeeeec--CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          160 PEDRMSVLP--SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       160 ~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .........  ..+|.|.++..+|+|.|+|.+.|..|....++.|...
T Consensus       159 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          159 SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            543222212  2369999999999999999999999999988887653

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=3.7e-27  Score=170.40  Aligned_cols=186  Identities=22%  Similarity=0.400  Sum_probs=148.5

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEee-CCEEeccccCceEEEe----cCcEEEEcccCCCCCceEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~-~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ++.+.+.|....+.+|+.+.|.|.+ .+.+ .+.+.|++ ++..+... ..++...    ....|.|.+++.+|+|.|+|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~i~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEE-SSCCSCCEEEEECTTSCBCCSS-CSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEe-CCCCCCcEeEEECCCCeECccC-CceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence            5678888888999999999999998 5544 68999999 77666422 2233322    24589999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC---CCeeeecCCeEEE
Q psy573           98 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQL  174 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~---~~~~~~~~~~l~i  174 (216)
                      .+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .+.....++.|.|
T Consensus        80 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            9999876555667788888888888888888999999999999999999999999999987643   2344456678999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecceee
Q psy573          175 SDVRLEDGGEYVCEAENAVGK--ISASATLTVQSKYLKV  211 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~~~p~~~  211 (216)
                      .++..+|+|.|+|.+.|..+.  ....+.|.|..+|.+.
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~  198 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQ  198 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEE
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccc
Confidence            999999999999999987643  4456677777776554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.96  E-value=1.1e-28  Score=169.34  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=122.1

Q ss_pred             ceEEecCCcEEEEeeCC--CCCCCCeeEEeeCCEEec---------------cccCceEEE---ecCcEEEEcccCCCCC
Q psy573           33 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPID---------------FENSKRLRL---VDGTNLAIQDSRKTDD   92 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~--~~~~~~~~~W~~~~~~~~---------------~~~~~~~~~---~~~~~l~i~~~~~~d~   92 (216)
                      ++++..|+.++|.|.+.  .+.|.+.+.|+|++....               .....++..   .+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            56889999999999531  567889999999763211               011111211   1234799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC-----CCCeeee
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-----EDRMSVL  167 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-----~~~~~~~  167 (216)
                      |.|.|.+.|..+.. ...+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.     ..+....
T Consensus        82 G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            99999999977764 45678888888887777777788899999999999999999999998775543     2233444


Q ss_pred             cCCeE---EEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          168 PSRSL---QLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       168 ~~~~l---~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .+++|   .+.++..+|.|.|+|.|.|..|....
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            55554   44689999999999999999998764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=172.80  Aligned_cols=180  Identities=28%  Similarity=0.446  Sum_probs=137.6

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecC--cEEEEcccCC-CCCceEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDG--TNLAIQDSRK-TDDGRYQCV   98 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~--~~l~i~~~~~-~d~g~y~C~   98 (216)
                      .+|.|...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...... ..+  ..|.|.++.. +|+|.|+|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            36888889999999999999999998 67888999999999887322 111111 222  5799999998 999999999


Q ss_pred             EEcCCCCcccceeEEEEeec-------ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC----Ceeee
Q psy573           99 VKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVL  167 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~  167 (216)
                      +.+..+.. ...+.|.|...       |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...    +....
T Consensus        83 a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  161 (304)
T 2yd9_A           83 AQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL  161 (304)
T ss_dssp             EECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred             EECCCCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence            99987763 55678888765       66777777788999999999999999999999999999877532    33344


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEE-EEEEEE
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTVQ  205 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~-~~l~v~  205 (216)
                      ..+.|.|.++..+|.|.|+|.+.|..|..... ..|.|.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEE
Confidence            56789999999999999999999998875422 444443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=3.2e-27  Score=171.87  Aligned_cols=185  Identities=23%  Similarity=0.347  Sum_probs=148.5

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecCc--EEEEcccCCCCCceEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDGT--NLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~g~y~C~   98 (216)
                      .+|.|...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+.... .++..  ..++  .|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEE-ECSSCCEEEEEETTEECCCCS-SSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEE-eCCCCCeEEEEECCEEcccCC-CeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            36788888999999999999999998 778889999999999875332 22222  2333  899999999999999999


Q ss_pred             EEcCCCCcccceeEEEEeecceEEeC-----CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cC
Q psy573           99 VKNVAGTRESTDAVLRVLVKPYIIRG-----PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PS  169 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~  169 (216)
                      +.+..+.. ...+.|.|..+|.+...     +....+..|+.+.|.|.+.+.|.+.+.|++++..+... +....   ..
T Consensus        81 a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~  159 (305)
T 2nzi_A           81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF  159 (305)
T ss_dssp             EEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSE
T ss_pred             EEcCCCCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCc
Confidence            99987654 55678888777765432     24567889999999999999999999999999877543 22222   23


Q ss_pred             CeEEEec-CCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          170 RSLQLSD-VRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       170 ~~l~i~~-~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      ..|.|.+ +..+|.|.|+|.+.|..|....++.|.|...|..
T Consensus       160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  201 (305)
T 2nzi_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP  201 (305)
T ss_dssp             EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC
T ss_pred             eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC
Confidence            5788998 9999999999999999999999999999876653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.96  E-value=1.8e-27  Score=164.05  Aligned_cols=181  Identities=19%  Similarity=0.232  Sum_probs=134.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec-----------------cccCceEEEecCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------------FENSKRLRLVDGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~l~i~~~~~   89 (216)
                      +.+.+.+..+.+|++++|.|.. .+.+.+.+.||+++....                 ....++.....+++|.|.+++.
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~   80 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM   80 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCG
T ss_pred             ccccCccceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccc
Confidence            3455556789999999999996 677888999998743211                 1124455566677899999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec---ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Cee
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMS  165 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~  165 (216)
                      +|+|.|+|.+.+..+......+.|.|..+   |.+......  +..|+.+.|.|.+.+.| +.+.|++++..+... +..
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~  157 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT  157 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEE
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeE
Confidence            99999999999875444455667777654   445444333  88899999999998866 799999999887643 333


Q ss_pred             ee-cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecceee
Q psy573          166 VL-PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKYLKV  211 (216)
Q Consensus       166 ~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p~~~  211 (216)
                      .. .+..|.|.++..+|.|.|+|.+.|..|. .+..+.|.|..+|.+.
T Consensus       158 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~  205 (208)
T 3r4d_A          158 LSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH  205 (208)
T ss_dssp             EETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred             EcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence            33 3478999999999999999999999998 5557888888877654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.96  E-value=3e-27  Score=162.53  Aligned_cols=168  Identities=19%  Similarity=0.312  Sum_probs=132.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .|.+...|....+.+|+.++|.|.+ .+.+.+ .+.||+++..+...         ...|.|.+++.+|+|.|+|.+.+.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETTS
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCCC
Confidence            3566777777889999999999998 566655 49999999987322         268999999999999999999864


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED  181 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  181 (216)
                      .   .+..+.|.|..+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|++++..+..    ......|.|.++..+|
T Consensus        77 ~---~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           77 T---LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYIPKATLKD  148 (204)
T ss_dssp             B---CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGG
T ss_pred             c---ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEECcCCccc
Confidence            2   34567888888877666554 678899999999999655 5688999999987532    2245789999999999


Q ss_pred             CeEEEEEEEcC-CcceEEEEEEEEEecce
Q psy573          182 GGEYVCEAENA-VGKISASATLTVQSKYL  209 (216)
Q Consensus       182 ~g~y~C~~~n~-~~~~~~~~~l~v~~~p~  209 (216)
                      +|.|+|.+.|. .+..+..+.|.|.++|.
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            99999999994 44577788888887653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.96  E-value=6.5e-28  Score=166.61  Aligned_cols=180  Identities=23%  Similarity=0.391  Sum_probs=137.8

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------ccccCceEEEecCcEEEEcccCCCCCce
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   94 (216)
                      ..+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+          ......++.... ..|.|.+++.+|+|.
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-SGITFSSVTRKDNGE   79 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-TEEEESCCCGGGCEE
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-eeEEEcccCcccCeE
Confidence            345566777889999999999998 66688899999976542          122334444443 789999999999999


Q ss_pred             EEEEEEcCCCC-cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEE-eCCCCCcEEEEeeCCc-cCCCCCe-------
Q psy573           95 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECS-VGGDAVLTVHWKRLGS-AMPEDRM-------  164 (216)
Q Consensus        95 y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~-~~~~~~~-------  164 (216)
                      |+|.+.+..+. .....+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....       
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~  159 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN  159 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence            99999987652 224567788888776554445567889999999999 7889999999999998 7654221       


Q ss_pred             ---ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcce--EEEEEEEEEe
Q psy573          165 ---SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKI--SASATLTVQS  206 (216)
Q Consensus       165 ---~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~--~~~~~l~v~~  206 (216)
                         .. .....|.|.++..+|.|.|+|.+.|..|..  +..+.|.|.+
T Consensus       160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence               11 235789999999999999999999999987  4556666653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=167.54  Aligned_cols=181  Identities=29%  Similarity=0.452  Sum_probs=134.0

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......  .........|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus        22 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~   99 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-R   99 (241)
T ss_dssp             CCEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CcceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-E
Confidence            446789999999999998 67788899999999987533221  2223345689999999999999999999876654 4


Q ss_pred             ceeEEEEeec----ceE-EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEee----CCccCCCCCeee------------e
Q psy573          109 TDAVLRVLVK----PYI-IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMSV------------L  167 (216)
Q Consensus       109 ~~~~l~v~~~----p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~------------~  167 (216)
                      ..+.+.|...    |.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.......            .
T Consensus       100 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  179 (241)
T 3grw_A          100 QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE  179 (241)
T ss_dssp             EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred             EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence            4566666542    233 334566678899999999999999999999999    776664332111            1


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      ....|.|.++..+|.|.|+|.+.|..|..+.++.|.|.++|.....
T Consensus       180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred             CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence            2356999999999999999999999999999999999988766544

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=2.7e-27  Score=178.01  Aligned_cols=173  Identities=24%  Similarity=0.384  Sum_probs=146.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+....   .+..|.|.++..+|+|.|+|.+.+..+..
T Consensus       218 ~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  296 (395)
T 1bih_A          218 VSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP  296 (395)
T ss_dssp             ECCSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             cCCceEEECCCcEEEEEEe-ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence            3556789999999999998 7888899999999998854443433322   22379999999999999999999988776


Q ss_pred             ccceeEEEEeecceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEE
Q psy573          107 ESTDAVLRVLVKPYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       107 ~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  185 (216)
                      ....+.|.|..+|.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+...+.... .+.|.|.++..+|+|.|
T Consensus       297 ~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y  375 (395)
T 1bih_A          297 QKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-DSGLVIKGVKNGDKGYY  375 (395)
T ss_dssp             EEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEE-TTEEEESSCCSTTCEEE
T ss_pred             eEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEE-CCEEEEeeCCcccCEEE
Confidence            555788999999998887777 6889999999999999999999999999998876655543 45899999999999999


Q ss_pred             EEEEEcCCcceEEEEEEEE
Q psy573          186 VCEAENAVGKISASATLTV  204 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l~v  204 (216)
                      +|.|.|..|....++.|.|
T Consensus       376 ~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          376 GCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEccCCCceEEEEEEE
Confidence            9999999999988888876

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.96  E-value=4.3e-28  Score=167.69  Aligned_cols=177  Identities=25%  Similarity=0.410  Sum_probs=133.3

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC----CCeeEEee----------------CCEEec---cccCceEEEec------Cc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP----EPTLVWKK----------------NGHPID---FENSKRLRLVD------GT   80 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~----~~~~~W~~----------------~~~~~~---~~~~~~~~~~~------~~   80 (216)
                      .+..+.+.+|+.+.|.|.+ .+.+    .+.+.|++                ++..+.   ....++.....      +.
T Consensus         6 ~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   84 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA   84 (214)
T ss_dssp             CEEEEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred             CCceEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence            4456789999999999998 4544    46999998                333331   12244555433      45


Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCcc-
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSA-  158 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~-  158 (216)
                      +|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++.. 
T Consensus        85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~  163 (214)
T 3jz7_A           85 SINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQ  163 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTC
T ss_pred             cEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCC
Confidence            79999999999999999999876654 55678888877754433333457789999999999 8899999999996543 


Q ss_pred             -CCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          159 -MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       159 -~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                       +..........+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       164 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          164 TMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             CCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             ccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence             33222222345689999999999999999999999999999998887543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=1.9e-27  Score=171.77  Aligned_cols=196  Identities=20%  Similarity=0.243  Sum_probs=149.9

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEee-CCEEeccccCceEEEecCcEEEEcccCC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRK   89 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~   89 (216)
                      .+..+.|.|...+..+...+....+.+|+.+.|.|.+ .+.+.+ .+.|++ ++..+  ....++....++.|.|.+++.
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~  153 (289)
T 3ejj_X           77 GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQV--LRKTVYFFSPWRGFIIRKAKV  153 (289)
T ss_dssp             -CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEEC--CTTCCEEEETTTEEEESSCCG
T ss_pred             ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCeec--CCCccEEECCCCCEEEeeccc
Confidence            3555667766654456777888899999999999998 454544 499987 55555  334456666778899999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRM  164 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~  164 (216)
                      +|+|.|+|.+.+.........+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.....
T Consensus       154 ~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~  233 (289)
T 3ejj_X          154 LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN  233 (289)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEE
T ss_pred             ccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCC
Confidence            999999999995443334566788887    5777777777777789999999999987 68899999999987765322


Q ss_pred             e------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          165 S------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       165 ~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .      ....+.|.|.++..+|.|.|+|.+.|..|....++.|.+...+.+
T Consensus       234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~~  285 (289)
T 3ejj_X          234 SDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH  285 (289)
T ss_dssp             EEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-----
T ss_pred             cccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecccc
Confidence            1      122467999999999999999999999999999999988866543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=9.7e-28  Score=173.52  Aligned_cols=191  Identities=15%  Similarity=0.231  Sum_probs=147.0

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEe-eCCEEeccccCceEEEecCcEEEEcccCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWK-KNGHPIDFENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      +..+.|.|...+..+ ..+....+.+|+.+.|.|.+ .+ |. +.+.|+ +++..+  ....++....+..|.|.+++.+
T Consensus        81 ~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~l--~~~~~~~~~~~~~L~i~~v~~~  155 (290)
T 2o26_X           81 TSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKSL--PTDLTFVPNPKAGITIKNVKRA  155 (290)
T ss_dssp             EEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCCC--CTTCEEEEETTTEEEEESCCGG
T ss_pred             cEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcCC--CCCCceeeCCCCCEEEecccHH
Confidence            455667776643333 66677889999999999998 44 77 899995 577666  3345556666778999999999


Q ss_pred             CCc-eEEEEEEcCCCCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccC----C
Q psy573           91 DDG-RYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAM----P  160 (216)
Q Consensus        91 d~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~----~  160 (216)
                      |+| .|+|.+.+..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+    .
T Consensus       156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~  235 (290)
T 2o26_X          156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQ  235 (290)
T ss_dssp             GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCC
T ss_pred             HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCcccee
Confidence            999 99999999755444455777776    677777777777889999999999999999886 9999998772    2


Q ss_pred             CCCe-------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          161 EDRM-------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       161 ~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ....       .....+.|.|.++..+|+|.|+|.+.|..|..+..+.|.|.++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          236 VKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             EECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             ecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            2111       12234679999999999999999999999999999999888765

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.96  E-value=1.6e-27  Score=187.28  Aligned_cols=187  Identities=22%  Similarity=0.444  Sum_probs=152.9

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cC--cEEEEcccCCC
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DG--TNLAIQDSRKT   90 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~~~   90 (216)
                      ..+.|.|.. +|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .++... .+  ..|.|.++..+
T Consensus       375 ~~~~l~V~~-~P~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~  450 (570)
T 3b43_A          375 SSTSLKVKE-PPVFRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSG--KKYKIMSENFLTSIHILNVDSA  450 (570)
T ss_dssp             EEEEECEEC-CCEECSCCCCEEECTTCCEEEEEEE-ESSSSCCCEEEETTEECCSS--SSEEEEEETTEEEEEECSCCGG
T ss_pred             EEEEEEecC-CCeeecCCCceeecCCCEEEEEEEE-ecCCCCEEEEEECCEECcCC--CCEEEEEcCCEEEEEECCCChh
Confidence            345666654 4777777888889999999999998 78899999999999987433  233322 22  47999999999


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC--CCeeee-
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL-  167 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~-  167 (216)
                      |+|.|.|.+.|..|.. .....|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  .+.... 
T Consensus       451 D~G~Y~C~A~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  529 (570)
T 3b43_A          451 DIGEYQCKASNDVGSD-TCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISY  529 (570)
T ss_dssp             GCEEEEEEEECSSCEE-EEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECC
T ss_pred             hCEEEEEEEEECCCeE-EEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEE
Confidence            9999999999988875 446788899999998888888899999999999999999999999999865432  233332 


Q ss_pred             --cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          168 --PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       168 --~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                        ...+|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       530 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          530 SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             CSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence              22579999999999999999999999999999988775

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.96  E-value=7.9e-27  Score=156.77  Aligned_cols=165  Identities=18%  Similarity=0.287  Sum_probs=130.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+.+.|....+.+|+.++|.|.+ .+.+.+. +.|++++..+.         ..+..|.|.+++.+|+|.|+|.+.+.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLIS---------SQASSYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEE---------SSCSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEcc---------CCceEEEEeCCCcccCEEEEEEeeCC
Confidence            4667778877889999999999998 5656554 78999998773         23568999999999999999999874


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCCCeeeecCCeEEEecCCCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED  181 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  181 (216)
                      .+   +..+.|.|..++..... ....+.+|+.+.|.|.+.+.++ +.+.|++++..+..    ......|.|.++..+|
T Consensus        77 ~~---s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L~i~~v~~~d  148 (175)
T 1fnl_A           77 TL---SDPVQLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKD  148 (175)
T ss_dssp             CC---CCCEEEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGG
T ss_pred             cc---cccEEEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEEEEcccChhh
Confidence            43   44567777766555444 3467889999999999987765 59999999987531    2346789999999999


Q ss_pred             CeEEEEEEEcCCcc-eEEEEEEEEEe
Q psy573          182 GGEYVCEAENAVGK-ISASATLTVQS  206 (216)
Q Consensus       182 ~g~y~C~~~n~~~~-~~~~~~l~v~~  206 (216)
                      .|.|+|.+.|..+. .+..+.|.|.+
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          149 SGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEEEEEEEcCCCCccCccEEEEEeC
Confidence            99999999997654 66677777764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=5e-27  Score=177.01  Aligned_cols=170  Identities=26%  Similarity=0.435  Sum_probs=143.0

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ........++.|.|.++..+|+|.|+|.+.|..+.. ...+.
T Consensus       231 ~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  306 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPS--DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTIS  306 (404)
T ss_dssp             EEEEETTSCEEEECCB-CCSSCCEEEEEETTBCCCT--TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEE
T ss_pred             CceEecCCCEEEEEEE-CCCCCCcEEEEECCEECCC--CcccccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEE
Confidence            4678999999999988 7888889999999987732  222333446789999999999999999999988764 55788


Q ss_pred             EEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCCeEEEecCCCCCCeEEEEEE
Q psy573          113 LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       113 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      |.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   .....++.|.|.++..+|+|.|+|.|
T Consensus       307 l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  386 (404)
T 3p3y_A          307 VRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT  386 (404)
T ss_dssp             EEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEE
T ss_pred             EEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEE
Confidence            899999988888888899999999999999999999999999998775321   22335678999999999999999999


Q ss_pred             EcCCcceEEEEEEEEEe
Q psy573          190 ENAVGKISASATLTVQS  206 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~  206 (216)
                      .|..|.....+.|.|.+
T Consensus       387 ~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          387 SNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EETTEEEEEEEEEEEC-
T ss_pred             EeCCCcEEEEEEEEEEe
Confidence            99999999999888764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.96  E-value=3.1e-27  Score=163.62  Aligned_cols=177  Identities=15%  Similarity=0.208  Sum_probs=126.9

Q ss_pred             cccceEEecC--CcEEEEeeCCCCCCCCeeEEeeC---CEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           30 QPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN---GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        30 ~~~~~~~~~G--~~~~l~C~~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .|..+.+.+|  +.++|.|.+ .+ |.+.+.|++.   +..+.  ...+.....+..|.|.+++.+|+|.|+|.+.+..+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~--~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVP--DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECC--CSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----
T ss_pred             CceEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCcccc--CCCcccccCCccEEEccCChhcCceEEEEEEECCe
Confidence            4567889999  999999998 44 6789999885   54442  22334445567899999999999999999988544


Q ss_pred             CcccceeEEEEee--cceEEeCCC-ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe---e---------ee
Q psy573          105 TRESTDAVLRVLV--KPYIIRGPK-DTTVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM---S---------VL  167 (216)
Q Consensus       105 ~~~~~~~~l~v~~--~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~---~---------~~  167 (216)
                      ...+..+.|.|..  +|.+...+. ...+.+|+.+.|.|.+.+.|  .+.+.|++++..+.....   .         ..
T Consensus        89 ~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~  168 (213)
T 2x1w_L           89 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK  168 (213)
T ss_dssp             CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE
T ss_pred             eEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcccee
Confidence            4334446666643  344444333 34889999999999998754  457999998876533211   0         11


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      ..++|.|.+++.+|+|.|+|.+.|..|..+..+.|.|.++|.+
T Consensus       169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            1246999999999999999999999999999999999988754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=8.9e-27  Score=174.95  Aligned_cols=183  Identities=21%  Similarity=0.385  Sum_probs=147.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEeccc---cCceEEEe---cCcEEEEcccCCCCCceEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPIDFE---NSKRLRLV---DGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~---~~~~~~~~---~~~~l~i~~~~~~d~g~y~   96 (216)
                      |.+.. +.+..+.+|+.+.|.|.+ .+.|.+.+.|+++  +..+...   ...++...   ..+.|.|.+++.+|+|.|.
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            44444 667788999999999998 7888999999999  8877431   13444443   2358999999999999999


Q ss_pred             EEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeee---cCC
Q psy573           97 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL---PSR  170 (216)
Q Consensus        97 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~---~~~  170 (216)
                      |.+.|..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...   +....   ...
T Consensus        80 C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  158 (389)
T 2jll_A           80 CEAASRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM  158 (389)
T ss_dssp             EEEECSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCE
T ss_pred             EEEEeCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEE
Confidence            9999988765 5678899999998876665557889999999999999999999999999887643   23322   234


Q ss_pred             eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       171 ~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .|.|.++..+|.|.|+|.+.|..|.....+.+.+...|..
T Consensus       159 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  198 (389)
T 2jll_A          159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS  198 (389)
T ss_dssp             EEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCC
T ss_pred             EEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCC
Confidence            6999999999999999999999999888888887765543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.95  E-value=2.8e-27  Score=177.29  Aligned_cols=176  Identities=28%  Similarity=0.476  Sum_probs=147.0

Q ss_pred             ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+... +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...     ....+..|.|.++..+|+|.|+|.+.+.
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  279 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSK-----WLSSEPLLHIQNVDFEDEGTYECEAENI  279 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCC-----CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEE-ccCCCCEEEEEECCcccccE-----EecCCcEEEEccCChhhCEEEEEEEEcC
Confidence            3445443 557789999999999998 67788899999987765321     1133568999999999999999999998


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDG  182 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  182 (216)
                      .+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..........+.|.|.++..+|+
T Consensus       280 ~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~  358 (382)
T 1cs6_A          280 KGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDS  358 (382)
T ss_dssp             TEEE-EEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGC
T ss_pred             CCeE-EEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccC
Confidence            7764 556788888899888888888999999999999999999999999999998876544444567899999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEe
Q psy573          183 GEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      |.|+|.+.|..|....++.|.|.+
T Consensus       359 G~Y~C~a~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          359 GMYQCVAENKHGTVYASAELTVQA  382 (382)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEeC
Confidence            999999999999999999988863

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.95  E-value=8.4e-27  Score=175.80  Aligned_cols=198  Identities=30%  Similarity=0.472  Sum_probs=157.6

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc-ccCceEEEecCcEEEEcccCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTD   91 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d   91 (216)
                      +..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ....+.....++.|.|.+++.+|
T Consensus       111 s~~~~l~v~~-p~~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  188 (403)
T 3laf_A          111 SRTAKVMVAG-PLRFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGD  188 (403)
T ss_dssp             CCCEEEEECC-CCEECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGG
T ss_pred             EEEEEEEecC-CCccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEccccccc
Confidence            3445555544 4666667778899999999999988 6778889999999887743 23344555567789999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeecc------eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--C
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--R  163 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~  163 (216)
                      +|.|+|.+.+..+........+.+...|      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .
T Consensus       189 ~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~  268 (403)
T 3laf_A          189 SGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK  268 (403)
T ss_dssp             CEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSS
T ss_pred             CEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCce
Confidence            9999999999776654556677776554      3445566778889999999999999999999999999877542  3


Q ss_pred             eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       164 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      ........|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       269 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  317 (403)
T 3laf_A          269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN  317 (403)
T ss_dssp             EEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             EEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEee
Confidence            4444667899999999999999999999999999999999998876644

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.95  E-value=5.5e-27  Score=163.98  Aligned_cols=187  Identities=28%  Similarity=0.428  Sum_probs=140.5

Q ss_pred             ccceEecc----cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEecCcEEEEcccCCCCCceEEE
Q psy573           24 REEFRVQP----KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVDGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        24 ~~~~~~~~----~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C   97 (216)
                      +|.|...+    ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......  ......+..|.|.+++.+|+|.|+|
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            45554444    67889999999999988 67788899999999987533221  1223345689999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeec----ceEEe-CCCceeEeCCCcEEEEEEeCCCCCcEEEEee----CCccCCCCCee---
Q psy573           98 VVKNVAGTRESTDAVLRVLVK----PYIIR-GPKDTTVSAGSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMS---  165 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~---  165 (216)
                      .+.+..+.. .....+.|...    |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+......   
T Consensus        94 ~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  172 (231)
T 3ojm_B           94 VVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK  172 (231)
T ss_dssp             EEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred             EEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence            999876654 44566666542    22222 2456688899999999999999999999999    66655432111   


Q ss_pred             --------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          166 --------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       166 --------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                              ......|.|.++..+|+|.|+|.+.|..|....++.|.|..+|..+.
T Consensus       173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG  227 (231)
T ss_dssp             EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred             EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence                    11235699999999999999999999999999999999998876543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.95  E-value=3.7e-27  Score=163.64  Aligned_cols=181  Identities=18%  Similarity=0.163  Sum_probs=128.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc--EEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...|. ..+.+|++++|.|.+ .+ +.+.+.|||++..+............+.  .|.|.+++.+|+|.|+|.+.+
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEc-CC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            466666676 578999999999998 44 6789999998776532211100112344  899999999999999999998


Q ss_pred             CCCC-cccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecC
Q psy573          102 VAGT-RESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV  177 (216)
Q Consensus       102 ~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~  177 (216)
                      ..+. ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+.+.+.+.|+|++..+............|.|.++
T Consensus        86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v  164 (218)
T 1uct_A           86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPV  164 (218)
T ss_dssp             TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSC
T ss_pred             CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccC
Confidence            6542 224456677754   45555544 457889999999997767778899999999877643222234578999999


Q ss_pred             CCCCCeEEEEEEEcCCc-----ceEEEEEEEEEecc
Q psy573          178 RLEDGGEYVCEAENAVG-----KISASATLTVQSKY  208 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~~-----~~~~~~~l~v~~~p  208 (216)
                      +.+|+|.|+|.+.|...     ..+..+.|.|.+.+
T Consensus       165 ~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          165 DLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             CGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             CcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            99999999999998632     24556777777643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.95  E-value=3.1e-27  Score=183.96  Aligned_cols=200  Identities=17%  Similarity=0.229  Sum_probs=157.6

Q ss_pred             HhhhceeeEE---eeccceEecccceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEE------EecCcE
Q psy573           12 EEEKKKLKIE---MLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLR------LVDGTN   81 (216)
Q Consensus        12 ~~~~~~l~v~---~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~------~~~~~~   81 (216)
                      .+..+.|.|.   ..+|.+...+....+.+|+.+.|.|.+ .+.|.+. +.|++++..+.........      ....+.
T Consensus       196 ~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (524)
T 2ec8_A          196 LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT  274 (524)
T ss_dssp             CCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEE-EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEE
T ss_pred             EEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEE-ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEE
Confidence            3456778876   356888888888899999999999998 5667665 9999998873111111111      122467


Q ss_pred             EEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCC---ceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCc
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK---DTTVSAGSIIVFECSVGGDAVLT-VHWKRLGS  157 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~  157 (216)
                      |.|.++..+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+.   ...+.+|+.+.|.|.+.+.|.|. +.|++++.
T Consensus       275 L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~  353 (524)
T 2ec8_A          275 LTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNR  353 (524)
T ss_dssp             EEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSC
T ss_pred             EEECCCCHHHCEEEEEEEEecCCce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCe
Confidence            9999999999999999999988775 3478888988887765443   56888999999999999999998 99999998


Q ss_pred             cCCCCC--eeeec-------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          158 AMPEDR--MSVLP-------SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       158 ~~~~~~--~~~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      .+....  .....       ...|.|.++..+|+|.|+|.+.|..|....++.|.|..+|.+...
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~  418 (524)
T 2ec8_A          354 TFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY  418 (524)
T ss_dssp             BCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEE
T ss_pred             eccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeec
Confidence            876543  21111       247999999999999999999999999999999999988876543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.95  E-value=2.1e-26  Score=159.15  Aligned_cols=171  Identities=17%  Similarity=0.238  Sum_probs=128.2

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      ...|+.+.|.|.+....|.+.+.|++++..+............+ ..|.|.+++.+|+|.|+|.+.+..+.. ...+.+.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEE
Confidence            34678888888883335688999999999885433322222222 359999999999999999999876654 3344444


Q ss_pred             Eee--------------------cce-EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeeec--C-
Q psy573          115 VLV--------------------KPY-IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLP--S-  169 (216)
Q Consensus       115 v~~--------------------~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~--~-  169 (216)
                      +..                    .|. +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .....  . 
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  172 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTT
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCC
Confidence            331                    233 3344556788999999999999999999999999998876543 22221  1 


Q ss_pred             -CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          170 -RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       170 -~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                       ..|.|.++..+|.|.|+|.+.|..|.....+.|.|..+
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence             37999999999999999999999999999988888743

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=187.38  Aligned_cols=191  Identities=14%  Similarity=0.200  Sum_probs=143.6

Q ss_pred             ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCce-EE------EecCcEEEEcccC
Q psy573           16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKR-LR------LVDGTNLAIQDSR   88 (216)
Q Consensus        16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~------~~~~~~l~i~~~~   88 (216)
                      +.|.|... |.+  .+....+.+|+.+.|.|.+..+.|.+.+.|++++..+....... ..      ......|.|.+++
T Consensus       222 ~~l~V~~~-p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  298 (527)
T 3qs9_E          222 FTIDLNQT-PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA  298 (527)
T ss_dssp             EEEESSSC-CCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred             EEEEEecc-Ccc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCC
Confidence            44554433 333  55678899999999999983378889999999988763321110 11      1122469999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCC--ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV  166 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~  166 (216)
                      .+|+|.|+|.+.|.    ....+.|.|..+|.+...+.  ...+.+|+.+.|.|.+.+.|.|.+.|++++..+.......
T Consensus       299 ~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~  374 (527)
T 3qs9_E          299 RNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL  374 (527)
T ss_dssp             GGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC
T ss_pred             cccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc
Confidence            99999999999887    35567888888887655443  3567789999999999999999999999998875443333


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH  213 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~  213 (216)
                      .....|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+...
T Consensus       375 ~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~  421 (527)
T 3qs9_E          375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE  421 (527)
T ss_dssp             SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC
T ss_pred             cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe
Confidence            35568999999999999999999999999999999999998877543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.95  E-value=8.8e-27  Score=156.67  Aligned_cols=168  Identities=20%  Similarity=0.336  Sum_probs=131.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...|....+.+|+.++|.|.+ .+.+.+ .+.|++++..+..         .+..|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~~   73 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQV   73 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTTS
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCCc
Confidence            4677788888899999999999998 555553 6999999987732         2568999999999999999999875


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED  181 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  181 (216)
                      .+   +..+.|.|..++..... ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...    .....|.|.++..+|
T Consensus        74 ~~---s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----~~~~~L~i~~v~~~d  145 (176)
T 1f2q_A           74 NE---SEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVED  145 (176)
T ss_dssp             SC---CCCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGG
T ss_pred             cc---cccEEEEEeCcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee----cCCCeEEECCCCccc
Confidence            43   34567777755544433 33578899999999999 45667799999999877432    235789999999999


Q ss_pred             CeEEEEEEEcCCcc-eEEEEEEEEEecce
Q psy573          182 GGEYVCEAENAVGK-ISASATLTVQSKYL  209 (216)
Q Consensus       182 ~g~y~C~~~n~~~~-~~~~~~l~v~~~p~  209 (216)
                      +|.|+|.+.|..+. .+..+.|.|..+|.
T Consensus       146 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          146 SGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            99999999997544 56668888888774

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=5.3e-27  Score=159.41  Aligned_cols=177  Identities=17%  Similarity=0.167  Sum_probs=125.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|.. .+.+|++++|.|.+ .+ +...+.|||++..+............+..|.|.+++.+|+|.|+|.+.+..
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            4566667766 78999999999998 33 456899999998764211111111234579999999999999999998754


Q ss_pred             CC-cccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCC
Q psy573          104 GT-RESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       104 ~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  179 (216)
                      +. ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+ +.+.+.|+|++..+............|.|.+++.
T Consensus        81 ~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~  158 (188)
T 1oll_A           81 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  158 (188)
T ss_dssp             EECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCG
T ss_pred             CCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCCCc
Confidence            32 224456677753   45555444 456889999999999865 4568999999876643211122346799999999


Q ss_pred             CCCeEEEEEEEcCCc---ceEEEEEEEEE
Q psy573          180 EDGGEYVCEAENAVG---KISASATLTVQ  205 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~---~~~~~~~l~v~  205 (216)
                      +|+|.|+|.+.|...   ..+..+.|.|.
T Consensus       159 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          159 AHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             GGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            999999999988642   24445666554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.95  E-value=2.5e-26  Score=166.03  Aligned_cols=184  Identities=18%  Similarity=0.337  Sum_probs=143.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+.+.+.+..+.+|+.+.|.|.+ .+.| +.+.|++ ++..+..  ..++....   ...|.|.+++.+|+|.|+|.+
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~-~~~p-~~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTA-IGEP-ESIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEE-ESCC-SEEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CceEEEeccceEecCCCcEEEEEEE-eCCC-CceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            5788888989999999999999998 5655 4899999 6665532  22333322   247999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---CCCeeeecCCeEEEec
Q psy573          100 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSD  176 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~~  176 (216)
                      .+..+......+.+.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..+.....++.|.|.+
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETT
T ss_pred             ecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEe
Confidence            9987765556677888888877777777889999999999999999999999999987764   2344445667899999


Q ss_pred             CCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecceee
Q psy573          177 VRLEDGGEYVCEAENAVGK--ISASATLTVQSKYLKV  211 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~~~p~~~  211 (216)
                      +..+|.|.|+|.+.|..+.  ....+.+.+..+|.+.
T Consensus       160 v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~  196 (291)
T 2wim_A          160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS  196 (291)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCB
T ss_pred             cchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccc
Confidence            9999999999999998754  3455677777776543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.95  E-value=8.9e-28  Score=165.56  Aligned_cols=178  Identities=22%  Similarity=0.404  Sum_probs=136.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------ccccCceEEEecCcEEEEcccCCCCCce
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   94 (216)
                      ..+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+          ......++.... ..|.|.+++.+|+|.
T Consensus         5 ~~i~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            5 VTVHSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGT   82 (209)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSE
T ss_pred             EEEEcCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcE
Confidence            455566777889999999999998 66688899999976542          122233344333 789999999999999


Q ss_pred             EEEEEEcCCCC-cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCe--------
Q psy573           95 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRM--------  164 (216)
Q Consensus        95 y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~--------  164 (216)
                      |+|.+.+..+. .....+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+.....        
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  162 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS  162 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence            99999987542 2245667778888876665666678999999999997 8899999999999987754321        


Q ss_pred             --ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcce--EEEEEEEE
Q psy573          165 --SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKI--SASATLTV  204 (216)
Q Consensus       165 --~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~--~~~~~l~v  204 (216)
                        .. ...+.|.|.++..+|.|.|+|.+.|..|..  +..+.|.|
T Consensus       163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence              11 134689999999999999999999999987  34444444

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.95  E-value=1.4e-26  Score=158.55  Aligned_cols=177  Identities=16%  Similarity=0.202  Sum_probs=124.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|. ..+.+|++++|.|.+ .+.+. .+.|++++..+............+..|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            466666665 488999999999998 55554 799999988763221111112345789999999999999999999876


Q ss_pred             -CC-cccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee--ee----cCCeE
Q psy573          104 -GT-RESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRSL  172 (216)
Q Consensus       104 -~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~----~~~~l  172 (216)
                       +. ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|++++..+......  ..    ....|
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEE
Confidence             32 224556777776   44554433 3578899999999999887 7899999999876433221  11    13679


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcc-----eEEEEEEEEE
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGK-----ISASATLTVQ  205 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~-----~~~~~~l~v~  205 (216)
                      .|.++..+|.|.|+|.+.|..+.     .+..+.|.|.
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            99999999999999999998652     2445666554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=156.93  Aligned_cols=157  Identities=20%  Similarity=0.234  Sum_probs=120.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|.. .+.+|++++|.|.+ .+ +.+.+.|++++..         ....+..|.|.+++.+|+|.|+|.+.+..
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSS---------RYQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEC-ST-TCSEEEEEETTTC---------CEESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeC-CC-CCCEEEEEECCcc---------ccCcccEEEECcCChhhCceEEEEEEcCC
Confidence            4566666664 78999999999998 44 6789999998765         12446789999999999999999999866


Q ss_pred             CC-cccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCC
Q psy573          104 GT-RESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       104 ~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  179 (216)
                      +. ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+.+ +.+.|++++..+............|.|.++..
T Consensus        76 g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~  153 (184)
T 2gi7_A           76 LWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVTA  153 (184)
T ss_dssp             EEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEETT
T ss_pred             CccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCCc
Confidence            42 224456677743   45555444 45677899999999987554 69999999987754332233456799999999


Q ss_pred             CCCeEEEEEEEcCCc
Q psy573          180 EDGGEYVCEAENAVG  194 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~  194 (216)
                      +|.|.|+|.+.|..+
T Consensus       154 ~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          154 AHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CCSEEEEEEEECTTS
T ss_pred             cCCeEEEEEEEeCCC
Confidence            999999999999754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=6.2e-26  Score=170.30  Aligned_cols=203  Identities=26%  Similarity=0.395  Sum_probs=145.6

Q ss_pred             hhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573            9 EKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus         9 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      +...+..+.|.+...++.....+....+.+|+.+.|.|....+.+.+.+.|++++..+. ....++....++.|.|.++.
T Consensus        87 G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~L~I~~v~  165 (384)
T 3kld_A           87 GTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVE  165 (384)
T ss_dssp             EEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC-CSSSEEECTTTCCEEESSCC
T ss_pred             ccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE-eeccEEEEcCCCcEEEeecC
Confidence            33344556677665533222233457899999999999764455678999999998763 22233333446689999999


Q ss_pred             CCCCceEEEEEEcCCCCcc--cceeEEEEe-------ecceEE-eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc-
Q psy573           89 KTDDGRYQCVVKNVAGTRE--STDAVLRVL-------VKPYII-RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS-  157 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~-  157 (216)
                      .+|+|.|+|.+.|..+...  .....+.+.       ..|.+. ..+....+.+|+.+.|.|.+.+.|.|.+.|++++. 
T Consensus       166 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~  245 (384)
T 3kld_A          166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK  245 (384)
T ss_dssp             GGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCC
T ss_pred             HHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCc
Confidence            9999999999998765431  111122221       223332 34556678899999999999999999999999554 


Q ss_pred             cCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          158 AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       158 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      .+..........+.|.|.++..+|+|.|+|.+.|..|.......|.|..+|.+..
T Consensus       246 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~  300 (384)
T 3kld_A          246 PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ  300 (384)
T ss_dssp             CCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             cccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCcccc
Confidence            4443333333457899999999999999999999999998889999998887644

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=179.05  Aligned_cols=177  Identities=15%  Similarity=0.210  Sum_probs=128.2

Q ss_pred             cccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCc-eEE------EecCcEEEEcccCCCCCceEEEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSK-RLR------LVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~-~~~------~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .+....+.+|+.+.|.|.+ .+ .|.+.+.|++++..+...... ...      ....+.|.|.+++.+|+|.|+|.+.|
T Consensus       233 ~~~~~~v~~G~~v~L~C~~-~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N  311 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (423)
T ss_dssp             STTEEEEETTSCEEEEEEE-EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETT
T ss_pred             CCCceEEeCCCeEEEEEEE-EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEec
Confidence            4456789999999999998 55 677899999998876322110 001      11234799999999999999999988


Q ss_pred             CCCCcccceeEEEEeecceEEeCC--CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCC
Q psy573          102 VAGTRESTDAVLRVLVKPYIIRGP--KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  179 (216)
                      .    ....+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++++..+............+.......
T Consensus       312 ~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~  387 (423)
T 3qs7_E          312 H----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHK  387 (423)
T ss_dssp             E----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCT
T ss_pred             C----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEeccc
Confidence            7    3556788888888776554  345677899999999999999999999999988754321111122232356677


Q ss_pred             CCCeEEEEEEEcCCcceEEEEEEEEEecceee
Q psy573          180 EDGGEYVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      +|+|.|+|.|.|..|..+.++.|.|...|..+
T Consensus       388 ~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          388 HQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH  419 (423)
T ss_dssp             TCCSCEEEEEEETTEEEEEEEEEC--------
T ss_pred             ccCEEEEEEEEcCCceEEEEEEEEEecCCccc
Confidence            89999999999999999999999999877543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=161.71  Aligned_cols=166  Identities=16%  Similarity=0.219  Sum_probs=111.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|.. .+.+|++++|.|.+ .+.+. .+.||+++..+............++.|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            4667777764 78999999999998 55554 999999988663211100011234579999999999999999998865


Q ss_pred             CCc-ccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee--ee----cCCeEE
Q psy573          104 GTR-ESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRSLQ  173 (216)
Q Consensus       104 ~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~----~~~~l~  173 (216)
                      +.. .+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+.| +.+.|++++..+......  ..    ....|.
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  159 (196)
T 2d3v_A           82 GWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFP  159 (196)
T ss_dssp             EECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEE
T ss_pred             CcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEE
Confidence            432 24456777766   45554443 34788999999999999888 899999999876432111  11    126799


Q ss_pred             EecCCCCCCeEEEEEEEcCCc
Q psy573          174 LSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       174 i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.+++.+|+|.|+|.+.|..+
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTE
T ss_pred             eeecCcccCeeEEEEEEccCC
Confidence            999999999999999998764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.95  E-value=6.7e-27  Score=159.90  Aligned_cols=177  Identities=19%  Similarity=0.282  Sum_probs=127.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|.. .+.+|++++|.|.+ .+ +.+.+.|++++..+............+..|.|.+++.+|+|.|+|.+.+..
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            4566667766 88999999999998 44 668999999988663211110001234579999999999999999999877


Q ss_pred             C-CcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-----eecCCeEEE
Q psy573          104 G-TRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSRSLQL  174 (216)
Q Consensus       104 ~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-----~~~~~~l~i  174 (216)
                      + ...+..+.|.|..   +|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|++++..+......     ......|.|
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            6 2335566777753   3455544433 6789999999999976 45689999998766433211     123467999


Q ss_pred             ecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEE
Q psy573          175 SDVRLEDGGEYVCEAENAVG-----KISASATLTVQ  205 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~-----~~~~~~~l~v~  205 (216)
                      .++..+|+|.|+|.+.|..+     ..+..+.|.|.
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             CCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99999999999999999876     24445555553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=167.62  Aligned_cols=193  Identities=19%  Similarity=0.230  Sum_probs=146.5

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCC-EEeccccCceEEEecCcEEEEcccCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNG-HPIDFENSKRLRLVDGTNLAIQDSRK   89 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~   89 (216)
                      +..+.|.|...+..+...+....+.+|+.+.|.|.+ .+ +.  +.+.|++++ ..+  ....+.....+..|.|.++..
T Consensus        78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~~-~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~  153 (292)
T 4dkd_C           78 SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-TD-PVLEAGVSLVRVRGRPL--MRHTNYSFSPWHGFTIHRAKF  153 (292)
T ss_dssp             CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEE-SS-GGGGSSEEEEEGGGCCC--CSSCCEECCSSSCCEETTCCG
T ss_pred             ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeC-CC-CCcceeEEEEecCCCcc--ccCCcccccCCceEEECCCCH
Confidence            556677776655556677778899999999999998 44 44  689999974 433  233344445556699999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCCCe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRM  164 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~  164 (216)
                      +|+|.|+|.+.+..+...+..+.|.|..    +|.+...+....+..|+.+.|.|.+.+.|. +.+.|++++..+.....
T Consensus       154 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~  233 (292)
T 4dkd_C          154 IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ  233 (292)
T ss_dssp             GGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE
T ss_pred             HHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc
Confidence            9999999999987665555578888886    788877777777789999999999987664 56889998876654322


Q ss_pred             eee------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          165 SVL------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       165 ~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      ...      ..+.|.|.++..+|+|.|+|.+.|..|..+.++.|.|.....
T Consensus       234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  284 (292)
T 4dkd_C          234 SDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG  284 (292)
T ss_dssp             EEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred             ceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence            111      224799999999999999999999999999999999886653

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.95  E-value=3e-26  Score=172.01  Aligned_cols=164  Identities=30%  Similarity=0.478  Sum_probs=136.2

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec----cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++....    .....+.. ..++.|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus       220 ~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-  296 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPA-QGFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-  296 (388)
T ss_dssp             CCEEEETTSCEEECCCC-EEESCCEEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEE-
T ss_pred             CceEEeeCCcEEEEEEC-CCCCCCEEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecCCCce-
Confidence            44678899999999998 677889999999753221    11222332 235689999999999999999999988764 


Q ss_pred             cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEE
Q psy573          108 STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       108 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ...+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..      ..+.|.|.++..+|+|.|+|
T Consensus       297 ~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~------~~~~L~i~~v~~~d~G~Y~C  370 (388)
T 2v5m_A          297 SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH------SESVLRIESVKKEDKGMYQC  370 (388)
T ss_dssp             EEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEE
T ss_pred             eEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc------CCCEEEEecCChhhCEEEEE
Confidence            556788888888877777778899999999999999999999999999987754      24689999999999999999


Q ss_pred             EEEcCCcceEEEEEEEE
Q psy573          188 EAENAVGKISASATLTV  204 (216)
Q Consensus       188 ~~~n~~~~~~~~~~l~v  204 (216)
                      .|.|..|....++.|.|
T Consensus       371 ~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          371 FVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEECSSCEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEEEEe
Confidence            99999999999888876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.94  E-value=3.8e-26  Score=166.93  Aligned_cols=189  Identities=13%  Similarity=0.190  Sum_probs=141.8

Q ss_pred             ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCC
Q psy573           16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRK   89 (216)
Q Consensus        16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~   89 (216)
                      +.|.+.. +|.+...+....+..|+.+.+.|.+..+.|.+.+.|++++..+...  .......+      +.|.|.+...
T Consensus       110 ~~l~v~~-~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~s~l~i~~~~~  186 (313)
T 4fqp_A          110 IWLRVLA-KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT--SQVPGFLSGTVTVTSLWILVPSSQ  186 (313)
T ss_dssp             EEECCBB-CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE--EEEECSSTTCEEEEEEEEECCCGG
T ss_pred             eeeeecc-CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc--ceeeeecccccccceeeeeccccc
Confidence            3344333 3555556666677789999999987557788999999998766321  11111111      3588999999


Q ss_pred             CCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeC-CCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeee
Q psy573           90 TDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRG-PKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSV  166 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~  166 (216)
                      +|+|.|+|.+.+..+.. ....+.|.|..+|.+... .....+..|+.+.|.|.+.|.|.| .+.|++++..++...  .
T Consensus       187 ~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~--~  264 (313)
T 4fqp_A          187 VDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA--V  264 (313)
T ss_dssp             GTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--E
T ss_pred             ccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce--E
Confidence            99999999999876543 244566777778877543 344466678999999999999988 699999998876542  3


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      ..+++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+.|.
T Consensus       265 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          265 AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred             EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence            3467899999999999999999999999999999999997664

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.94  E-value=2.4e-26  Score=162.65  Aligned_cols=173  Identities=23%  Similarity=0.326  Sum_probs=124.4

Q ss_pred             cccceEEecCCcEEEEeeCCCC---CCCCeeEEeeCCEEec----------------------------cccCceEEEec
Q psy573           30 QPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGHPID----------------------------FENSKRLRLVD   78 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~~~~~~----------------------------~~~~~~~~~~~   78 (216)
                      .+..+.+.+|+.++|.|.+ .+   .+.+.+.|++++....                            ....++..+..
T Consensus         8 ~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             CCCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            4446789999999999987 43   6788999999864310                            11223333332


Q ss_pred             --CcEEEEcccCCCCCceEEEEEEcCCCCcc----cceeEEEEeec---ceEEe-CCCceeEeCCCcEEEEEEeCCCCCc
Q psy573           79 --GTNLAIQDSRKTDDGRYQCVVKNVAGTRE----STDAVLRVLVK---PYIIR-GPKDTTVSAGSIIVFECSVGGDAVL  148 (216)
Q Consensus        79 --~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~  148 (216)
                        +..|.|.+++.+|+|.|+|.+.+..+...    ...+.|.|..+   |.+.. .+....+.+|+.+.|.|.+.+.|.|
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence              35799999999999999999998765431    23567777654   23332 3344567789999999999999999


Q ss_pred             EEEEeeCCccCCCC-------------------------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCc---ceEEEE
Q psy573          149 TVHWKRLGSAMPED-------------------------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG---KISASA  200 (216)
Q Consensus       149 ~i~W~~~~~~~~~~-------------------------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~---~~~~~~  200 (216)
                      .+.|++++..+...                         +........|.|.++..+|+|.|+|.|.|..|   ....++
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            99999998766431                         11111346899999999999999999999554   455555


Q ss_pred             EEE
Q psy573          201 TLT  203 (216)
Q Consensus       201 ~l~  203 (216)
                      .|.
T Consensus       247 ~l~  249 (250)
T 2fbo_J          247 ILK  249 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.94  E-value=1e-25  Score=152.52  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=126.0

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------------ccCceEEEec------CcEEEEcccCCCCCce
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------------ENSKRLRLVD------GTNLAIQDSRKTDDGR   94 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------------~~~~~~~~~~------~~~l~i~~~~~~d~g~   94 (216)
                      .+.+.+|+.++|.|.+ .+.+.+.+.|++++.....            ....++....      ..+|.|.+++.+|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            4678999999999998 6778889999998753211            1122333221      3359999999999999


Q ss_pred             EEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEE
Q psy573           95 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL  174 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i  174 (216)
                      |+|.+.+..+     .+.|.|..   +.. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+      ......|.|
T Consensus        83 Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i  147 (184)
T 2ny1_B           83 YICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV  147 (184)
T ss_dssp             EEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEE
T ss_pred             EEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEE
Confidence            9999987532     34555553   222 34457889999999999988999999999987553      335678999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .++..+|+|.|+|.+.|..+..+..+.|.|.+.|..
T Consensus       148 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             ecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence            999999999999999999999999999999987753

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.94  E-value=9.6e-26  Score=164.83  Aligned_cols=188  Identities=21%  Similarity=0.298  Sum_probs=137.9

Q ss_pred             eeeEEeeccceEeccc---ceEEecCCcEEEEeeCC-----CCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573           17 KLKIEMLREEFRVQPK---SQRVAAGDTALLECGPP-----RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus        17 ~l~v~~~~~~~~~~~~---~~~~~~G~~~~l~C~~~-----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      .+.+...+|.+...+.   ...+.+|+.+.|.|.+.     .+.|.+.+.|++++..+.... .++ ...++.|.|.+++
T Consensus        93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~-~~~-~~~~~~L~i~~v~  170 (315)
T 1itb_B           93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN-IHF-SGVKDRLIVMNVA  170 (315)
T ss_dssp             CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS-SSE-EEETTEEEESSCC
T ss_pred             EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc-ceE-eecCceEEEEece
Confidence            3333334455443332   35788999999999862     577889999999999885422 223 3346689999999


Q ss_pred             CCCCceEEEEEE-cCCCCccc--ceeEEEEe-----ecceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC
Q psy573           89 KTDDGRYQCVVK-NVAGTRES--TDAVLRVL-----VKPYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM  159 (216)
Q Consensus        89 ~~d~g~y~C~~~-~~~~~~~~--~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~  159 (216)
                      .+|+|.|+|.+. +..+....  ..+.+.+.     .+|.+...+.. ..+..|+.+.|.|.+.+.|.|.+.|++++..+
T Consensus       171 ~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i  250 (315)
T 1itb_B          171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI  250 (315)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEEC
T ss_pred             ehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEEC
Confidence            999999999999 66665422  22333333     45666554443 46789999999999999999999999999887


Q ss_pred             CCCCe------eee----------cCCeEEEecCCCCC-CeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          160 PEDRM------SVL----------PSRSLQLSDVRLED-GGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       160 ~~~~~------~~~----------~~~~l~i~~~~~~d-~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .....      ...          ....|.|.++..+| +|.|+|.|.|..|....++.|.|+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             CTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            64321      111          12379999999999 9999999999999999998888753

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.94  E-value=6.3e-26  Score=171.01  Aligned_cols=200  Identities=22%  Similarity=0.377  Sum_probs=150.4

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD   91 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   91 (216)
                      .+..+.|.|...+......+....+.+|+.+.|.|.+..+.|.+.+.|++++.... ....+.....++.|.|.++..+|
T Consensus       104 ~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~l~i~~v~~~d  182 (404)
T 3p3y_A          104 LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI-TQDKRVSQGHNGDLYFSNVMLQD  182 (404)
T ss_dssp             EEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBC-CCCSSEEECTTSCEEESSCCSGG
T ss_pred             eeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcccc-CCCCcEEEcCCCcEEEEeeeecc
Confidence            34556677766544444455568899999999999976677889999999875432 23445555667789999999999


Q ss_pred             -CceEEEEEEcCCCCcc--cceeEEEEeec-------ceEEeCC---CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc
Q psy573           92 -DGRYQCVVKNVAGTRE--STDAVLRVLVK-------PYIIRGP---KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA  158 (216)
Q Consensus        92 -~g~y~C~~~~~~~~~~--~~~~~l~v~~~-------p~~~~~~---~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~  158 (216)
                       +|.|+|.+.+..+...  ...+.+.+...       |.+....   ....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus       183 ~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~  262 (404)
T 3p3y_A          183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD  262 (404)
T ss_dssp             GSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBC
T ss_pred             CCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEE
Confidence             5999999998766432  22345555432       2222111   234678999999999999999999999999998


Q ss_pred             CCCCCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          159 MPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       159 ~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      +........ ..+.|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       263 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  317 (404)
T 3p3y_A          263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD  317 (404)
T ss_dssp             CCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE
T ss_pred             CCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeec
Confidence            866544332 457899999999999999999999999999999999998876544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=4.7e-25  Score=149.19  Aligned_cols=162  Identities=19%  Similarity=0.310  Sum_probs=124.3

Q ss_pred             eEEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           34 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      ..+.+|+.++|.|.+ .+.+.+  .+.|++++..+......    .....|.|.  +.+|+|.|+|.+.+.    ....+
T Consensus         8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~----~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~   76 (184)
T 3b5h_A            8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTA   76 (184)
T ss_dssp             EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCC----CSEEEEEEC--GGGCCEEEEEEEEST----TSCEE
T ss_pred             EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeeccccc----CCcEEEEEe--chhhCeEEEEEEECC----cCcEE
Confidence            467899999999997 454555  99999999887433211    112245555  689999999999972    23567


Q ss_pred             EEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEee---CCcc-CCC---CCeeeec---CCeEEEecCC-C
Q psy573          112 VLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKR---LGSA-MPE---DRMSVLP---SRSLQLSDVR-L  179 (216)
Q Consensus       112 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~---~~~~-~~~---~~~~~~~---~~~l~i~~~~-~  179 (216)
                      .|.|..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++.. +..   .++....   ...|.|.++. .
T Consensus        77 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  156 (184)
T 3b5h_A           77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME  156 (184)
T ss_dssp             EEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred             EEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence            88899999888777777889999999999999999 79999999   4433 321   2333322   2379999999 8


Q ss_pred             CCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          180 EDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      +|.|.|+|.+.|..|.....+.|.|.+
T Consensus       157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ccCceEEEEEEeCCCcceEEEEEEEec
Confidence            999999999999999988888888864

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=2.9e-25  Score=163.40  Aligned_cols=177  Identities=19%  Similarity=0.232  Sum_probs=133.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.| .+.+.|++++..+.. ...++... ++.|.|.+++.+|+|.|+|.+.|.
T Consensus       128 ~p~~~~~~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~~-~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          128 PPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELII-DGTKYSQS-GQNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             CCSCEEEEEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECCC-SSSSEEEE-TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCcEeccccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCCC-CCceEecC-CCEEEEeecChhhCEEEEEEEEec
Confidence            4444333333346679999999998 7778 899999999998842 23344434 688999999999999999999986


Q ss_pred             --CCCc---ccceeEEEEeecc----eEEeCCCceeEeCCCcEEEEEEeCCCC---Cc-EEEEeeCCccC-CCCCe-eee
Q psy573          103 --AGTR---ESTDAVLRVLVKP----YIIRGPKDTTVSAGSIIVFECSVGGDA---VL-TVHWKRLGSAM-PEDRM-SVL  167 (216)
Q Consensus       103 --~~~~---~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~-~i~W~~~~~~~-~~~~~-~~~  167 (216)
                        .+..   ....+.|.|..+|    .+. .+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+ ..... ...
T Consensus       205 ~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~  283 (329)
T 3oq3_B          205 DVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSI  283 (329)
T ss_dssp             CTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEE
T ss_pred             ccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeee
Confidence              4332   1223667777665    344 56667889999999999999887   77 89999998874 32221 111


Q ss_pred             -------cCCeEEEecCCCCCCe-EEEEEEEcCCcceEEEEEEEE
Q psy573          168 -------PSRSLQLSDVRLEDGG-EYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       168 -------~~~~l~i~~~~~~d~g-~y~C~~~n~~~~~~~~~~l~v  204 (216)
                             ....|.|.++..+|.| .|+|.|.|..|....++.|.|
T Consensus       284 ~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence                   2467999999999999 999999999999988888776

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.94  E-value=9.2e-26  Score=169.08  Aligned_cols=199  Identities=23%  Similarity=0.368  Sum_probs=147.7

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKT   90 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~   90 (216)
                      .+..+.|.|...+......+....+.+|+.+.|.|.+..+.|.+.+.|++++..+......+.... .++.|.|.+++.+
T Consensus        89 ~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  168 (382)
T 1cs6_A           89 VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS  168 (382)
T ss_dssp             ECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGG
T ss_pred             EecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcc
Confidence            345567777665333333455678999999999998645667889999999876533333333333 3468999999999


Q ss_pred             CCceEEEEEEcCCCCcc----cceeEEEEe------ecceEEe-CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC
Q psy573           91 DDGRYQCVVKNVAGTRE----STDAVLRVL------VKPYIIR-GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM  159 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~  159 (216)
                      |+|.|+|.+.+..+...    +....+.+.      .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus       169 d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~  248 (382)
T 1cs6_A          169 DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ  248 (382)
T ss_dssp             GCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCC
T ss_pred             cCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccc
Confidence            99999999998664221    222344432      2455443 345678889999999999999999999999988775


Q ss_pred             CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          160 PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       160 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      ...  .......|.|.++..+|.|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       249 ~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  299 (382)
T 1cs6_A          249 TSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD  299 (382)
T ss_dssp             SCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             ccE--EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCccc
Confidence            431  223457899999999999999999999999998999999998887654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.94  E-value=3.1e-25  Score=148.22  Aligned_cols=162  Identities=19%  Similarity=0.337  Sum_probs=126.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+...|....+.+|+.+.|.|.+ .+.+ .+.+.||+++..+...         ...+.+.+++.+|+|.|+|.+.+..
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~~   74 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQTS   74 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTSB
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCCC
Confidence            456667777789999999999998 5544 6799999999987432         2346778999999999999998643


Q ss_pred             CCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCC
Q psy573          104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDG  182 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  182 (216)
                      .   +..+.|.|..++.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..    ......|.|.++..+|.
T Consensus        75 ~---s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~v~~~d~  146 (170)
T 3ry4_A           75 L---SDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----SHLDPTFSIPQANHSHS  146 (170)
T ss_dssp             C---CCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----ESSCCEEEESSCCGGGC
T ss_pred             c---eEeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----cCCCCeEEEEeccccCC
Confidence            2   345778888777555443 4578899999999999 4556789999999876531    22456799999999999


Q ss_pred             eEEEEEEEcCCcc-eEEEEEEEE
Q psy573          183 GEYVCEAENAVGK-ISASATLTV  204 (216)
Q Consensus       183 g~y~C~~~n~~~~-~~~~~~l~v  204 (216)
                      |.|+|.+.|..|. .+..+.|.|
T Consensus       147 G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          147 GDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEEeCcCccccccEEEEE
Confidence            9999999999987 555566655

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.94  E-value=3.1e-26  Score=157.24  Aligned_cols=178  Identities=17%  Similarity=0.223  Sum_probs=124.3

Q ss_pred             eEecccceE-EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           27 FRVQPKSQR-VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        27 ~~~~~~~~~-~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      +.+.|.... +.+|+.++|.|.+ .+.|.+.+.|++....   ......... .+..|.|.+++.+|+|.|.|.+.+..+
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   78 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDS---PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCC---CCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             EEECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCC---CccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence            344555544 4599999999998 6788899999984211   011222222 345799999999999999999999766


Q ss_pred             CcccceeEEEEeecceE-EeCCCceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccCCCCCee--------eecCCeE
Q psy573          105 TRESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAMPEDRMS--------VLPSRSL  172 (216)
Q Consensus       105 ~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~--------~~~~~~l  172 (216)
                      .. ...+.|.|..+|.. ...+. ..+.+|+.+.|.|.+.+.++   ++|.|++++..+......        ......|
T Consensus        79 ~~-~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l  156 (202)
T 1vca_A           79 KL-EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEV  156 (202)
T ss_dssp             EE-EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEE
T ss_pred             eE-eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEE
Confidence            43 55678888776642 22222 56889999999999977543   479999999765321110        1112346


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcc-------eEEEEEEEEEeccee
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGK-------ISASATLTVQSKYLK  210 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~-------~~~~~~l~v~~~p~~  210 (216)
                      .|.....+|+|.|+|.|.|..+.       ...++.|.|..+|.-
T Consensus       157 ~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~  201 (202)
T 1vca_A          157 TFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN  201 (202)
T ss_dssp             EECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred             EEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence            77888888899999999998775       456788888888753

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=9.1e-26  Score=166.23  Aligned_cols=177  Identities=32%  Similarity=0.497  Sum_probs=134.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc-eEE-EecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLR-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...... ... ......|.|.+++.+|+|.|+|.+.+..+.. ...
T Consensus       132 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~  209 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQT  209 (334)
T ss_dssp             EEEEETTCCEEEECCC-CCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEE
T ss_pred             eEEecCCCcEEEEEEc-cCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEE
Confidence            4678899999999998 77888999999999877432211 111 1234589999999999999999999987654 445


Q ss_pred             eEEEEeec----ceEEe-CCCceeEeCCCcEEEEEEeCCCCCcEEEEee----CCccCCCCCe---eee----------c
Q psy573          111 AVLRVLVK----PYIIR-GPKDTTVSAGSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRM---SVL----------P  168 (216)
Q Consensus       111 ~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~~---~~~----------~  168 (216)
                      +.|.|...    |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....   ...          .
T Consensus       210 ~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  289 (334)
T 1ry7_B          210 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE  289 (334)
T ss_dssp             EEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTT
T ss_pred             EEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccc
Confidence            67777652    22222 3456688899999999999999999999999    5655532211   111          1


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceee
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus       290 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             CCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC-
T ss_pred             ccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCCc
Confidence            1379999999999999999999999999999999999877544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.94  E-value=3.2e-27  Score=175.00  Aligned_cols=178  Identities=19%  Similarity=0.217  Sum_probs=141.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc-eEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... ......++.|.|.+++.+|+| .|+|.+.+.
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~  235 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAEND  235 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCceeccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccc-cceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence            5778888888899999999999998 7888899999998865422111 111223467999999999999 999999998


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-----------cCCe
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----------PSRS  171 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-----------~~~~  171 (216)
                      .+.. ...+.+.|..+|.+    .......|+.+.|.|.+.|.|.|.+.|++++..+........           ..++
T Consensus       236 ~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~  310 (347)
T 2ifg_A          236 VGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC  310 (347)
T ss_dssp             TEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEE
T ss_pred             CCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceE
Confidence            7665 45667777777775    112345789999999999999999999999988775433221           1356


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      |.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus       311 L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            9999999999999999999999999999999887765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.94  E-value=1.2e-25  Score=174.93  Aligned_cols=196  Identities=18%  Similarity=0.262  Sum_probs=150.7

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEecCcEEEEcccCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTD   91 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   91 (216)
                      +..+.|.|... +.+...+....+.+|+.+.|.|.+ .+.+.+.+.||+ ++..+  ....++....++.|.|.+++.+|
T Consensus       104 ~~~~~l~V~~p-~~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l--~~~~~~~~~~~~~L~i~~~~~~d  179 (524)
T 2ec8_A          104 SNSIYVFVRDP-AKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPL--PKDLRFIPDPKAGIMIKSVKRAY  179 (524)
T ss_dssp             EEEEEEECCCS-SCSBCCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCC--CSSCEEEEETTTEEEEESCCGGG
T ss_pred             ceEEEEEECCC-CcccccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCc--CCCCceeECCCccEEEeccchhh
Confidence            44555665543 444466777889999999999998 565668999998 77666  33455666677899999999999


Q ss_pred             Cc-eEEEEEEcCCCCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccC--CCCC
Q psy573           92 DG-RYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAM--PEDR  163 (216)
Q Consensus        92 ~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~--~~~~  163 (216)
                      +| .|+|.+.+..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+  ....
T Consensus       180 ~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~  259 (524)
T 2ec8_A          180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY  259 (524)
T ss_dssp             TTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEE
T ss_pred             CCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccccc
Confidence            99 99999998766554556777776    677887777778899999999999999888876 9999999873  2211


Q ss_pred             e-------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          164 M-------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       164 ~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      .       .....+.|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       260 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  315 (524)
T 2ec8_A          260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINI  315 (524)
T ss_dssp             EEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEE
T ss_pred             ccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEe
Confidence            1       122346799999999999999999999999988899999988776543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.94  E-value=1.4e-25  Score=150.65  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=118.4

Q ss_pred             ceEEecCCcEEEEeeC-CCCCCCCeeEEeeCCEEec--------cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           33 SQRVAAGDTALLECGP-PRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~-~~~~~~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+.+.+|++++|.|.. ....+.+.+.|++++..+.        .....++.+..+++|.|.+++.+|+|.|.|.+.+..
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            3578899999999953 1225567899999987552        123456666667789999999999999999999987


Q ss_pred             CCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCC
Q psy573          104 GTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDG  182 (216)
Q Consensus       104 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  182 (216)
                      +.. ....+.|.|..++.     .......+..+.|.|.+.+.|.|.+.|++++..+...       ..+.|..+..+|.
T Consensus        85 g~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~-------~~~~i~~~~~~d~  152 (176)
T 1hng_A           85 GTRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNLR  152 (176)
T ss_dssp             CCEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE-------SSSEEEEECSCCS
T ss_pred             CCEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC-------CcEEEEEEEccCC
Confidence            764 34456666665321     1112223456899999999999999999998765321       2255667889999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEE
Q psy573          183 GEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      |.|+|.|.|..|.......|.+
T Consensus       153 G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          153 APFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SCEEEEEEETTEEEEEEECCCC
T ss_pred             eEEEEEEEecCCCceecccccC
Confidence            9999999999999887766543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=1.7e-25  Score=157.51  Aligned_cols=180  Identities=16%  Similarity=0.163  Sum_probs=127.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|.. .+.+|++++|.|.+ .. +...+.|||++..+............+..|.|.+++.+|+|.|+|.+.+..
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   83 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   83 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEee-CC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence            4566667766 88999999999997 33 456899999998763211110011224579999999999999999998753


Q ss_pred             CC-cccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCC
Q psy573          104 GT-RESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL  179 (216)
Q Consensus       104 ~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  179 (216)
                      +. ..+..+.|.|..   .|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|+|++..+............|.|.+++.
T Consensus        84 ~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~  161 (242)
T 1p6f_A           84 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  161 (242)
T ss_dssp             EECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECCG
T ss_pred             ccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCcc
Confidence            32 224456777764   45555444 3468899999999998754 468999999976643211122346799999999


Q ss_pred             CCCeEEEEEEEcCC---cceEEEEEEEEEecc
Q psy573          180 EDGGEYVCEAENAV---GKISASATLTVQSKY  208 (216)
Q Consensus       180 ~d~g~y~C~~~n~~---~~~~~~~~l~v~~~p  208 (216)
                      +|+|.|+|.+.|..   ...+..+.|.|.+.+
T Consensus       162 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          162 AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             GGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             ccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            99999999999864   235567778887643

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.94  E-value=4.4e-26  Score=157.70  Aligned_cols=174  Identities=14%  Similarity=0.265  Sum_probs=126.5

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec----------cccCceEEE---ecCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRL---VDGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~---~~~~~l~i~~~~~~   90 (216)
                      .+...+ .+.+.+|+.++|.|.+ .+.+.+.+.||+.  +....          .....++..   ..+.+|.|.+++.+
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            344445 7889999999999998 6778899999983  21110          002233332   23457999999999


Q ss_pred             CCceEEEEEEcCCC--CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCC
Q psy573           91 DDGRYQCVVKNVAG--TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPED  162 (216)
Q Consensus        91 d~g~y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~  162 (216)
                      |+|.|.|.+.+..+  ........|.|.    .+|.+...+....+..|+.+.|.|.+.+. |. +.+.|++++..+...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG  160 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence            99999999998776  233556678887    66777666655556689999999999875 33 489999999877542


Q ss_pred             C---------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          163 R---------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       163 ~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .         ......+.|.|..+..+|.|.|+|.|.|..+...+++.
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          161 VKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             cccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            1         11112245889999999999999999999877766654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.94  E-value=3.9e-25  Score=180.28  Aligned_cols=194  Identities=22%  Similarity=0.378  Sum_probs=148.3

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--CcEEEEcccCCCC
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTD   91 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d   91 (216)
                      ..+.+.|...|......+....+.+|+.++|.|.+..+.+.+.+.|++++..+............  .+.|.|.++..+|
T Consensus       609 ~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d  688 (816)
T 3dmk_A          609 GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH  688 (816)
T ss_dssp             EEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGG
T ss_pred             eeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhh
Confidence            34555555543333334455678999999999998444455599999999887433332222222  3579999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-------Ce
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-------RM  164 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-------~~  164 (216)
                      +|.|+|.+.|..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..++..       ..
T Consensus       689 ~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~  767 (816)
T 3dmk_A          689 AGNFTCHARNLAGHQ-QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDN  767 (816)
T ss_dssp             CEEEEEEEECSSCEE-EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTT
T ss_pred             CEEEEEEEEeCCccE-EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCC
Confidence            999999999988765 5567888999999888888889999999999999999999999999987654322       11


Q ss_pred             eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          165 SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       165 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ....+++|.|.++..+|+|.|+|.|.|..|....++.+..+..+
T Consensus       768 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~~  811 (816)
T 3dmk_A          768 IRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH  811 (816)
T ss_dssp             EEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC-
T ss_pred             EEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeecc
Confidence            22245689999999999999999999999998888877666443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.93  E-value=2.2e-24  Score=171.64  Aligned_cols=180  Identities=21%  Similarity=0.373  Sum_probs=142.1

Q ss_pred             ceeeEEeecc-ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCc
Q psy573           16 KKLKIEMLRE-EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        16 ~~l~v~~~~~-~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g   93 (216)
                      +.+.|...++ .....+....+.+|+.+.|.|.+ . .+.+.+.|++++..+..  ..++... +++.|.|.++..+|+|
T Consensus       458 ~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~-~-~~~~~i~W~~~g~~l~~--~~~~~~~~~~~~L~i~~v~~~d~G  533 (642)
T 1e07_A          458 KTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP-E-AQNTTYLWWVNGQSLPV--SPRLQLSNGNRTLTLFNVTRNDAR  533 (642)
T ss_pred             EEEEEeccCCCceEecCCceeecCCCeEEEEEEC-C-CCCcEEEEEECCEeCCC--CCcEEEcCCCcEEEEeecChhcCc
Confidence            4455544322 22223445678899999999998 4 47889999999998743  3334333 3568999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecce-EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeE
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKPY-IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSL  172 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l  172 (216)
                      .|+|.+.|..|...+..+.|.|..+|. +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..       ...|
T Consensus       534 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------~~~L  606 (642)
T 1e07_A          534 AYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH-------TQVL  606 (642)
T ss_pred             eEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc-------CceE
Confidence            999999998876555567888886654 45556677889999999999999999999999999987653       3579


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus       607 ~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             EECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence            9999999999999999999999988888777764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.93  E-value=5.2e-25  Score=153.20  Aligned_cols=177  Identities=16%  Similarity=0.215  Sum_probs=120.0

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC-----CCeeEEeeCCEEecc-------------ccCceEEEec------CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNGHPIDF-------------ENSKRLRLVD------GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~-----~~~~~W~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~   85 (216)
                      .+..+.+.+|+.+.|.|.+ .+.|     ...+.|++++..+..             ...++..+..      +.+|.|.
T Consensus         7 p~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            3445688999999999997 4444     348999997643311             1123444432      2479999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCCCCCe
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMPEDRM  164 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~~~~~  164 (216)
                      +++.+|+|.|+|.+.+ .+. ....+.|.|..++..........+..|+.+.|.|.+.+.|.|.+.|+++ +..+.....
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE
T ss_pred             CcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc
Confidence            9999999999999998 333 3445677777654322111112566899999999999999999999998 444433211


Q ss_pred             e-e--ecCCeEE---EecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          165 S-V--LPSRSLQ---LSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       165 ~-~--~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      . .  ...+.+.   +..+..+|.|.|+|.|.|..|.....+.|.|.+.|.
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            1 1  1122222   224557899999999999999999999999887664

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=3.3e-24  Score=152.66  Aligned_cols=165  Identities=19%  Similarity=0.281  Sum_probs=134.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+...|....+.+|+.+.|.|.+ .+.+.+ .+.|++++..+..         .+..|.|.+++.+|+|.|+|.+.+..
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~   71 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLSG   71 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEESSSC
T ss_pred             CeEecCCCcEEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeec---------cCCeEEEecCCcccCeEEEEEEecCC
Confidence            667788888899999999999998 666666 9999999988732         14679999999999999999998754


Q ss_pred             CCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCC
Q psy573          104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDG  182 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  182 (216)
                      +   +..+.+.|..++... .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..    ......|.|.++..+|.
T Consensus        72 ~---s~~~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~----~~~~~~l~i~~~~~~d~  143 (262)
T 3rjd_A           72 R---SDPIQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF----FHWNSNLTILKTNISHN  143 (262)
T ss_dssp             C---CCCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGC
T ss_pred             c---cccEEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc----cCCCCeEEEEECChhhC
Confidence            3   335677777666443 3345678899999999999 6778889999999877532    12357799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEec
Q psy573          183 GEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      |.|+|.+.|..+..+..+.|.|...
T Consensus       144 G~Y~C~~~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A          144 GTYHCSGMGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             EEEEEEEESSSEEEEECEEEEEECS
T ss_pred             EEEEEEEeCCCCccccceEEEeccC
Confidence            9999999999988888888888853

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.93  E-value=1e-24  Score=155.92  Aligned_cols=178  Identities=24%  Similarity=0.358  Sum_probs=123.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCC--CCCCCeeEEeeCCEEe----------------ccccCceEEEec-----CcE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPR--GHPEPTLVWKKNGHPI----------------DFENSKRLRLVD-----GTN   81 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~--~~~~~~~~W~~~~~~~----------------~~~~~~~~~~~~-----~~~   81 (216)
                      +.+...+..+.+.+|+.+.|.|.+..  +.+.+.+.|++++...                ......+..+..     +.+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            45666777789999999999999821  4566789999965321                011124444322     267


Q ss_pred             EEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe---CCCCCcEEEEeeCCc
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV---GGDAVLTVHWKRLGS  157 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~W~~~~~  157 (216)
                      |.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..     ..+....+.+|+.+.|.|.+   .+.|.+.+.|++++.
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~  160 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG  160 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence            9999999999999999999865432 23334444431     23456688899999999999   677899999999543


Q ss_pred             cCCCC-----------------------Ceee-----ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          158 AMPED-----------------------RMSV-----LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       158 ~~~~~-----------------------~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .....                       +...     .....|.|.++..+|+|.|+|.+.|..|.....+.|.|...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence            21110                       1111     23467999999999999999999999999999999998543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=165.10  Aligned_cols=182  Identities=21%  Similarity=0.289  Sum_probs=140.3

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCC-------CCCCCeeEEeeCCEEec--cccCceEEEecCcEEEEcccCCCCCc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPR-------GHPEPTLVWKKNGHPID--FENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~-------~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..|.+...+....+.+|+.+.|.|.+ .       +.|.+.+.|++++..+.  .....++. ..++.|.|.+++.+|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQ-VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTT-SCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEecc-ccccccccCCCCceEEEEECCCCcccCccccccEE-eeCCeEEECCCCcccCE
Confidence            35788889999999999999999998 4       77888999999988742  22233443 44678999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecceEE--eCCCceeEeCCCcEEEEEE-----eCCCCCcEEEEeeCCccCCCC--Ce
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKPYII--RGPKDTTVSAGSIIVFECS-----VGGDAVLTVHWKRLGSAMPED--RM  164 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~--~~  164 (216)
                      .|+|.+.+..+.. ...+.|.|...+...  .......+..|+.+.|.|.     +.+.|.+.+.|++++..+...  +.
T Consensus        95 ~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           95 TYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            9999999876643 456677776654321  1122347789999999999     788889999999999887654  33


Q ss_pred             eeecC-CeEEEecCCCCCCeEEEEEEEcCCc----ceEEEEEEEEEec
Q psy573          165 SVLPS-RSLQLSDVRLEDGGEYVCEAENAVG----KISASATLTVQSK  207 (216)
Q Consensus       165 ~~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~----~~~~~~~l~v~~~  207 (216)
                      ..... +.|.|.++..+|.|.|+|.+.|..|    .....+.|.|...
T Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~  221 (339)
T 3o4o_C          174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK  221 (339)
T ss_dssp             EECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC
T ss_pred             EEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC
Confidence            33322 5799999999999999999999887    4566788888753

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.93  E-value=1.6e-26  Score=168.52  Aligned_cols=196  Identities=14%  Similarity=0.207  Sum_probs=140.1

Q ss_pred             hhceeeEEeeccc-eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEecCcEEEEcccCCC
Q psy573           14 EKKKLKIEMLREE-FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        14 ~~~~l~v~~~~~~-~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~   90 (216)
                      ..+.+.+...++. +...+.......|+.+.|.|.+..+.|.+.+.|++++..+......  .......+.|.|.++..+
T Consensus       103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~  182 (308)
T 4fom_A          103 SSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFA  182 (308)
T ss_dssp             EEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGG
T ss_pred             eeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeec
Confidence            3344555444332 2334445556678999999986467889999999998766321100  000011236999999999


Q ss_pred             CCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCC-ceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeee
Q psy573           91 DDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPK-DTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVL  167 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~  167 (216)
                      |+|.|+|.+.+..+.. ....+.|.|..+|.+...+. ...+..|+.+.|.|.+.+.|.| .+.|++++..++... ...
T Consensus       183 d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~-~~~  261 (308)
T 4fom_A          183 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL-LAS  261 (308)
T ss_dssp             TTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC-BCS
T ss_pred             CCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE-EEc
Confidence            9999999999876543 23455667777887754443 3466678999999999999988 699999998776442 222


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      ....+.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|..
T Consensus       262 ~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          262 DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             TTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC--
T ss_pred             CCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCCC
Confidence            3345667899999999999999999999999999999998864

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=1.6e-25  Score=165.87  Aligned_cols=196  Identities=19%  Similarity=0.296  Sum_probs=109.3

Q ss_pred             hceeeEEeeccceE---ecccceEEecCCcEEEEeeCC----CCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc
Q psy573           15 KKKLKIEMLREEFR---VQPKSQRVAAGDTALLECGPP----RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS   87 (216)
Q Consensus        15 ~~~l~v~~~~~~~~---~~~~~~~~~~G~~~~l~C~~~----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~   87 (216)
                      .+.|.|...+..+.   ..+....+.+|+.+.|.|.+.    .+.|.+.+.||+++..+...  ..+ ...+..|.|.++
T Consensus       108 ~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~--~~~-~~~~~~L~i~~v  184 (349)
T 4dep_C          108 AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNV-IPEGMNLSFLIA  184 (349)
T ss_dssp             EEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC--SSE-EEETTEEEEESC
T ss_pred             EEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc--cce-eecCCEEEEeee
Confidence            34566655332221   224456788999999999731    45788999999999987332  222 233468999999


Q ss_pred             CCCCCceEEEEEEcCC-CCc--ccceeEEEEee------cceEEeCCCce--eEeCCCcEEEEEEeC----CCCCcEEEE
Q psy573           88 RKTDDGRYQCVVKNVA-GTR--ESTDAVLRVLV------KPYIIRGPKDT--TVSAGSIIVFECSVG----GDAVLTVHW  152 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g~~~~l~C~~~----~~p~~~i~W  152 (216)
                      +.+|+|.|+|.+.+.. +..  ....+.|.|..      +|.+.......  .+..|+.+.|.|.+.    +.|.+.+.|
T Consensus       185 ~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W  264 (349)
T 4dep_C          185 LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW  264 (349)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEE
T ss_pred             eecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEE
Confidence            9999999999999875 332  24455666655      45554444332  678899999999997    568899999


Q ss_pred             eeCCccCCC--CCeee------------ecCCeEEEecCCCCCC-eEEEEEEEcCCcceEEEEEEEEEe-cceeeec
Q psy573          153 KRLGSAMPE--DRMSV------------LPSRSLQLSDVRLEDG-GEYVCEAENAVGKISASATLTVQS-KYLKVIH  213 (216)
Q Consensus       153 ~~~~~~~~~--~~~~~------------~~~~~l~i~~~~~~d~-g~y~C~~~n~~~~~~~~~~l~v~~-~p~~~~~  213 (216)
                      ++++..+..  .+...            .....|.|.++..+|. |.|+|.|.|..|.....+.|.|.. +|.+...
T Consensus       265 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~~p~~~~~  341 (349)
T 4dep_C          265 TIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVE  341 (349)
T ss_dssp             ESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-------------
T ss_pred             EECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecCCCCCceE
Confidence            999987654  11111            0123499999999999 999999999999999999999886 3444443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.93  E-value=2.4e-25  Score=154.01  Aligned_cols=173  Identities=19%  Similarity=0.205  Sum_probs=122.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Ee----------ccccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PI----------DFENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|+.+.|.|.+ .+.+.+.+.||+++.  ..          ......++....   ...|.|.+++.+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeCCccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            4445677889999999999998 677778999998531  11          111123444332   2379999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCCccCCCC-Cee
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-RMS  165 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~-~~~  165 (216)
                      +|.|.|.+.+..+........|.|..   +|.+...+.......|+.+.|.|.+.+ .|.+ .+.|++++..+... ...
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  162 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  162 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeec
Confidence            99999999987664334445667764   566655444444457889999999977 5554 89999999876544 111


Q ss_pred             e----------ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          166 V----------LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       166 ~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      .          ...+.|.|.++..+|.|.|+|.|.|.........
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3d9a_L          163 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK  207 (213)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred             CCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence            1          1123799999999999999999999887643333

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=161.79  Aligned_cols=173  Identities=17%  Similarity=0.291  Sum_probs=127.9

Q ss_pred             ceEEecCCcEEEEeeCCCC----------CCCCeeEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEEEc
Q psy573           33 SQRVAAGDTALLECGPPRG----------HPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~----------~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ...+.+|+.+.|.|.+ .+          .|.+.+.|++++..+............+ ..|.|.+++.+|+|.|+|.+.+
T Consensus       107 ~~~~~~g~~~~l~c~~-~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  185 (317)
T 2y25_A          107 KKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD  185 (317)
T ss_dssp             HHHHTCBCCCEEEECS-SEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             ceecccCCCeEEEeec-cccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEe
Confidence            3445677888888876 44          6888999999998874332222221211 3599999999999999999999


Q ss_pred             CCCCcccceeEEEEee--------------------cceEE-eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC
Q psy573          102 VAGTRESTDAVLRVLV--------------------KPYII-RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP  160 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~--------------------~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~  160 (216)
                      ..+.. ...+.+.+..                    .|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       186 ~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~  264 (317)
T 2y25_A          186 GKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA  264 (317)
T ss_dssp             SSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC
T ss_pred             CCceE-EEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC
Confidence            77654 3344444321                    23333 33455688899999999999999999999999998876


Q ss_pred             CCC-eeeecC-C---eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          161 EDR-MSVLPS-R---SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       161 ~~~-~~~~~~-~---~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      ... ...... +   .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       265 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            543 233221 2   7999999999999999999999999999999988743

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.93  E-value=3.6e-25  Score=154.05  Aligned_cols=177  Identities=24%  Similarity=0.359  Sum_probs=120.4

Q ss_pred             cceEEecCCcEEEEeeCCCCCCC-----CeeEEeeCCEEe-----------ccccCceEEEec------CcEEEEcccCC
Q psy573           32 KSQRVAAGDTALLECGPPRGHPE-----PTLVWKKNGHPI-----------DFENSKRLRLVD------GTNLAIQDSRK   89 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~-----~~~~W~~~~~~~-----------~~~~~~~~~~~~------~~~l~i~~~~~   89 (216)
                      .++.+.+|++++|.|.+ .+.+.     +.+.|++++...           ......+..+..      +.+|.|.+++.
T Consensus         3 ~~v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CCEEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            34567899999999998 44432     689999976332           112234444433      46799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec---ceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeC-CccCCCCCe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRL-GSAMPEDRM  164 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~-~~~~~~~~~  164 (216)
                      +|+|.|+|.+.+....  ...+.|.|..+   |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|+++ +..+.....
T Consensus        82 ~D~G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           82 TDEGSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             GGCSCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred             ccCEEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence            9999999999975322  33455555543   4444433 3467789999999999 7889999999994 444432211


Q ss_pred             -ee--ecCC---eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          165 -SV--LPSR---SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       165 -~~--~~~~---~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                       ..  ...+   .|.|.++..+|.|.|+|.+.|..|....++.|.|.++|....
T Consensus       159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC------
T ss_pred             eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccC
Confidence             11  1222   378899999999999999999999999999999998875443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=146.68  Aligned_cols=161  Identities=22%  Similarity=0.361  Sum_probs=115.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc----------------cCceEEEecCcEEEEcccCCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE----------------NSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      .|..+.+.+|++++|.|.+....+.+.+.|++++..+...                ..+++.+..+++|.|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            4566789999999999998333455799999987654210                113555556788999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecc---eEEeCCCceeEeCCC-cEEEEEEeCCC-CCcEEEEeeCCccCCCCCeeeec
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSAGS-IIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLP  168 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~  168 (216)
                      .|.|.+.+..+.. ...+.|.|..++   .+....  .....|. .+.|.|.+.+. |.+.+.|++++..+.       .
T Consensus        84 ~Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~-------~  153 (193)
T 2if7_A           84 SYRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS-------S  153 (193)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-------S
T ss_pred             eEEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-------C
Confidence            9999999877654 336677776543   333322  1233455 79999999885 588999999886542       3


Q ss_pred             CCeEEEecCCCC-CCeEEEEEEEcCCcceEEEE
Q psy573          169 SRSLQLSDVRLE-DGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       169 ~~~l~i~~~~~~-d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ...|.|.....+ |.|.|+|.|.|..|..+..+
T Consensus       154 ~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          154 QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            455777655554 89999999999999876554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=158.77  Aligned_cols=178  Identities=11%  Similarity=0.161  Sum_probs=129.5

Q ss_pred             ccceEeccc-ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-C--cEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-G--TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~-~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+...+. ...+.+|+.+.|.|.+..+.|.+.+.|++++..+............ .  ..|.|.+++.+|+|.|+|.+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  185 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL  185 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence            344444443 6789999999999998437889999999999988544332333221 2  24999999999999999999


Q ss_pred             EcCCCCcccceeEEEE---------------------eecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCc
Q psy573          100 KNVAGTRESTDAVLRV---------------------LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGS  157 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~  157 (216)
                      .+.....   ...+.+                     ..+|.+... ....+.+|+.+.|.|.+.+.|.+ .+.|++++.
T Consensus       186 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~  261 (312)
T 2y23_A          186 QDGKATN---HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDER  261 (312)
T ss_dssp             ESSSCEE---EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-EEEEEETTTEEEEEEEEESCCSSCEEEEEETTE
T ss_pred             EeCCceE---EEEEEEcchhhhhhcccccccccchhhccCCceeec-ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCE
Confidence            8643322   222222                     112443322 22578899999999999999888 999999998


Q ss_pred             cCC-CCCeeeecC-CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          158 AMP-EDRMSVLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       158 ~~~-~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .+. ..+.....+ ..|.|.++..+|+|.|+|.|.|..|....++.|.++
T Consensus       262 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          262 EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             ECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            775 233322222 589999999999999999999999999998888654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=3e-24  Score=159.04  Aligned_cols=173  Identities=17%  Similarity=0.232  Sum_probs=128.9

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC-----------CCeeEEeeCCEEe----ccc---cCceEEEecCcEEEEcccCCCCC
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP-----------EPTLVWKKNGHPI----DFE---NSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~-----------~~~~~W~~~~~~~----~~~---~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      ...+.+.+|+.+.|.|.+ .+.|           .+.+.||+++...    ...   ...+.. ..++.|.|.+++.+|+
T Consensus        14 ~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~   91 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS-KEKDVLWFRPTLLNDT   91 (349)
T ss_dssp             CCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE-EETTEEEESSCCGGGC
T ss_pred             eeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEe-ecCCEEEEccCChhhC
Confidence            446789999999999998 5544           4899999987421    111   222332 3456899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEe----CCCceeEeCCCcEEEEEEe-----CCCCCcEEEEeeCCccCCCCC
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIR----GPKDTTVSAGSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDR  163 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~----~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~~~  163 (216)
                      |.|+|.+.+..+.. ...+.|.|..++....    .+....+.+|+.+.|.|.+     .+.|.+.+.|++++..+....
T Consensus        92 G~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~  170 (349)
T 4dep_C           92 GNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN  170 (349)
T ss_dssp             EEEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS
T ss_pred             EEEEEEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc
Confidence            99999999876654 4456777776553221    1234467789999999985     677899999999999886543


Q ss_pred             eeeecCCeEEEecCCCCCCeEEEEEEEcCC-cce---EEEEEEEEEe
Q psy573          164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAV-GKI---SASATLTVQS  206 (216)
Q Consensus       164 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-~~~---~~~~~l~v~~  206 (216)
                      .....+..|.|.++..+|+|.|+|.+.|.. |..   +..+.|.|..
T Consensus       171 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          171 NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             SEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             ceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            344455789999999999999999999987 443   6777777776

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.93  E-value=1.4e-24  Score=162.95  Aligned_cols=198  Identities=19%  Similarity=0.302  Sum_probs=143.8

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEEecc---ccCceEEEecCcEEEEcc
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDF---ENSKRLRLVDGTNLAIQD   86 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~   86 (216)
                      +..+.|.+.. +|.+...+....+.+|+.+.|.|.+ .+.+   .+.+.|++++..+..   ....++....++.|.|.+
T Consensus        93 s~~~~v~v~~-~p~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  170 (388)
T 2v5m_A           93 SRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE  170 (388)
T ss_dssp             CCCEEEEEEC-CCCCCCBCCCEEEETTSCEEECCBC-CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESS
T ss_pred             ecceEEEEcc-ccccccCccceeeecCCcEEEEEEC-cCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEec
Confidence            4455566544 3556666777889999999999998 4433   378999999876632   124456666678899999


Q ss_pred             cCCCCC-ceEEEEEEcCCCCccc---ceeEEEEeec-----ceEE-eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC
Q psy573           87 SRKTDD-GRYQCVVKNVAGTRES---TDAVLRVLVK-----PYII-RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG  156 (216)
Q Consensus        87 ~~~~d~-g~y~C~~~~~~~~~~~---~~~~l~v~~~-----p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~  156 (216)
                      ++.+|+ |.|+|.+.+..+....   ....+.|..+     |.+. .......+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus       171 v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~  250 (388)
T 2v5m_A          171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI  250 (388)
T ss_dssp             CCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEEC
T ss_pred             CCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecC
Confidence            999999 9999999986533211   1234555443     2211 1223456888999999999999999999999985


Q ss_pred             ccCC------CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          157 SAMP------EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       157 ~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      ....      .........+.|.|.++..+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  312 (388)
T 2v5m_A          251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI  312 (388)
T ss_dssp             TTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE
T ss_pred             CCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCcccc
Confidence            4332      1122223457899999999999999999999999988899999998776543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.93  E-value=1.2e-24  Score=160.03  Aligned_cols=192  Identities=17%  Similarity=0.295  Sum_probs=141.4

Q ss_pred             hhhceeeEEeeccce--EecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEec--c---ccCceEEEecCcEE
Q psy573           13 EEKKKLKIEMLREEF--RVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPID--F---ENSKRLRLVDGTNL   82 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~--~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~--~---~~~~~~~~~~~~~l   82 (216)
                      +..+.|.|... |.+  ...+....+.+|   +.+.|.|.+..+.|.+.+.|++++....  .   .....+..  ...|
T Consensus       120 ~~~~~l~V~~~-p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~L  196 (331)
T 3u83_A          120 ESQLNLTVMAK-PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV--ISRY  196 (331)
T ss_dssp             EEEEEEEEEBC-CEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE--EEEE
T ss_pred             EEEEEEEEecC-CcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE--EEEE
Confidence            34566666654 333  234556788888   7799999733678889999999532211  0   01111111  1358


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEe-CCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCC
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMP  160 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~  160 (216)
                      .|.++..+|+|.|+|.+.+..+.. ...+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+. +.|++++..+.
T Consensus       197 ~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~  275 (331)
T 3u83_A          197 RLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP  275 (331)
T ss_dssp             EECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCC
T ss_pred             EEEeccccCCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccc
Confidence            888899999999999999987653 5567788888887664 33445688899999999999999998 99999998876


Q ss_pred             CCCeeeecCCeEEEe-cCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          161 EDRMSVLPSRSLQLS-DVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       161 ~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      ..  .....+.|.|. ++..+|.|.|+|.+.|..|.....+.|.|...+..
T Consensus       276 ~~--~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  324 (331)
T 3u83_A          276 KG--VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL  324 (331)
T ss_dssp             TT--EEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred             cc--ceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence            54  22356789999 89999999999999999999999999999876654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.93  E-value=8.6e-25  Score=148.19  Aligned_cols=145  Identities=19%  Similarity=0.316  Sum_probs=106.1

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcc-cCCCCCceEEEEEEcCCCCcccceeE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD-SRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      ....+|+.+.|.|.+ .+ + +.+.|++++..+...        .+..|.|.+ ++.+|+|.|+|.+.|..+.. ...+.
T Consensus         9 ~v~~~G~~v~L~C~~-~~-~-~~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~   76 (186)
T 1jbj_A            9 KVSISGTSVELTCPL-DS-D-ENLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLK   76 (186)
T ss_dssp             EEEEETTEEEEECSS-CC-C-TTCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEEC
T ss_pred             EEEeCCcEEEEEEeC-CC-C-CceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEE
Confidence            345789999999998 44 3 349999999988432        345799999 99999999999999877652 22222


Q ss_pred             EEEee--cceEE------------------eCC--Cc---eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee
Q psy573          113 LRVLV--KPYII------------------RGP--KD---TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL  167 (216)
Q Consensus       113 l~v~~--~p~~~------------------~~~--~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~  167 (216)
                      +.|..  ++...                  ...  ..   ..+.+|+.+.|.|.+   |.|.+.|+|++..+.....   
T Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---  150 (186)
T 1jbj_A           77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---  150 (186)
T ss_dssp             CCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---
T ss_pred             EEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---
Confidence            22221  11100                  000  00   123489999999998   7889999999998763321   


Q ss_pred             cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          168 PSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            45789999999999999999999998876

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=7.9e-24  Score=166.76  Aligned_cols=191  Identities=17%  Similarity=0.253  Sum_probs=141.9

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCee----EEee--CCE--Eecc-------ccCceEEEe-
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTL----VWKK--NGH--PIDF-------ENSKRLRLV-   77 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~----~W~~--~~~--~~~~-------~~~~~~~~~-   77 (216)
                      ..+.|.|... |.+...+....+.+|+.+.|.|.+ .+.|.+.+    .|++  ++.  .+..       ....++.+. 
T Consensus       322 ~~~~l~V~~~-p~~~~~~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~  399 (585)
T 2ocw_A          322 QAWQLFVNEE-STIPRSPTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE  399 (585)
T ss_pred             eeEEEEEecc-cccccCCcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec
Confidence            4556666553 666667778889999999999998 77787776    7999  776  3321       123344443 


Q ss_pred             --cCc--EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeC----CCCCcE
Q psy573           78 --DGT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVG----GDAVLT  149 (216)
Q Consensus        78 --~~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~  149 (216)
                        .++  +|.|.+++.+|+|.|+|.+ +..+.. ...+.|.|...|.....+....+.+|+.+.|.|.+.    +.|.+.
T Consensus       400 ~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~-~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~  477 (585)
T 2ocw_A          400 EPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLW-RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW  477 (585)
T ss_pred             cCCCcEEEEEECCCChhhCEEEEEcc-cCCCcc-ceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEE
Confidence              233  4999999999999999998 665543 456778887654444446777899999999999986    667889


Q ss_pred             EEEeeCCccCCCCC-------eeeec----CCeEEEecCCCCCCeEEEEEEEcCCcceE-EEEEEEEEecc
Q psy573          150 VHWKRLGSAMPEDR-------MSVLP----SRSLQLSDVRLEDGGEYVCEAENAVGKIS-ASATLTVQSKY  208 (216)
Q Consensus       150 i~W~~~~~~~~~~~-------~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~~~~~-~~~~l~v~~~p  208 (216)
                      +.|++++..+....       .....    ...|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       478 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            99999997663221       11111    14799999999999999999999998744 45889999877

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.92  E-value=1.3e-24  Score=150.07  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=117.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEe----------ccccCceEEEec---CcEEEEcccCCCCCceE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----------DFENSKRLRLVD---GTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y   95 (216)
                      |....+.+|+.++|.|.+ .+.+.+.+.||++.  ..+          ......++....   ...|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            777889999999999998 66777899999842  211          011123443332   23799999999999999


Q ss_pred             EEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCC-Cee----
Q psy573           96 QCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMPED-RMS----  165 (216)
Q Consensus        96 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~~~----  165 (216)
                      .|.+.+..+........|.|..   +|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++..+... ...    
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  165 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQ  165 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCC
T ss_pred             EEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCc
Confidence            9999987654333344666654   4666554444444579999999999864 443 89999999877644 111    


Q ss_pred             eecC------CeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          166 VLPS------RSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       166 ~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ...+      +.|.|..+..+|+|.|+|.|.|.....
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          166 DSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            0111      368999999999999999999987653

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.92  E-value=5e-24  Score=147.42  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=118.2

Q ss_pred             ecccceEEecCCcEEEEeeCCCC------CCCCeeEEeeCCEEe---------------ccccCceEEEec-----CcEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG------HPEPTLVWKKNGHPI---------------DFENSKRLRLVD-----GTNL   82 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~------~~~~~~~W~~~~~~~---------------~~~~~~~~~~~~-----~~~l   82 (216)
                      ..|..+.+.+|+.++|.|.+...      .+.+.+.||+++...               .....+++.+..     +.+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34667889999999999987321      246789999986521               012234555543     2479


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcc---cceeEEEEeec---ceEEeCCCceeEeCCCcEEEEEEeCCC----CCcEEEE
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRE---STDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSVGGD----AVLTVHW  152 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W  152 (216)
                      .|.+++.+|+|.|.|.+.+..+...   ...+.|.|...   |.+.. +.  .+.+|+.+.|.|.+.+.    |.|.+.|
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W  161 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSW  161 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEE
Confidence            9999999999999999998653211   23567777653   44433 22  36789999999999764    7889999


Q ss_pred             eeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEE
Q psy573          153 KRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLT  203 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~  203 (216)
                      ++++.......  ....+.|.|..+..+|+|.|+|.|.|..+.  .+..+.|.
T Consensus       162 ~~~~~~~~~~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          162 TGNALSPLDPE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             ESSTTSSSCSS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             eCCCCccCCCC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            99987643322  234578999999999999999999998654  44454443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.92  E-value=7.4e-25  Score=161.21  Aligned_cols=171  Identities=22%  Similarity=0.280  Sum_probs=125.7

Q ss_pred             cceEEecCCcEEEEeeCCCC---------CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc-eEEEEEEc
Q psy573           32 KSQRVAAGDTALLECGPPRG---------HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKN  101 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~---------~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~  101 (216)
                      ..+.+.+|+++.|.|.+ .+         .|.+.+.||+++..+..... .   ..++.|.|.+++.+|+| .|+|.+.+
T Consensus        37 ~~v~v~eG~~v~L~C~~-~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~-~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n  111 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPP-IEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR-R---VKNGDLWIANYTSNDSHRRYLCTVTT  111 (329)
T ss_dssp             EEEEECTTSCEEECCHH-HHCTTTGGGSCCTTCEEEEEECSSSCEECST-T---EETTEEEESSCCGGGGGCCEEEEEEC
T ss_pred             ceEEEECCCeEEEEccC-CCCccccccccCCCCeeEEEECCCCccccCc-e---eecceEEEcCCChHhCCCcEEEEEEe
Confidence            45679999999999987 33         36679999999876633211 1   33678999999999999 89999999


Q ss_pred             CCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCC--CeeeecCCeEEEecCC
Q psy573          102 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR  178 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~  178 (216)
                      ..|........+.+..+|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+...  +... .+..|.|.++.
T Consensus       112 ~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~-~~~~L~I~~v~  190 (329)
T 3oq3_B          112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ-SGQNLIIHNPE  190 (329)
T ss_dssp             TTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE-ETTEEEECSCC
T ss_pred             CCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec-CCCEEEEeecC
Confidence            876543333233334444433222233456799999999999999 8999999999887532  2323 36889999999


Q ss_pred             CCCCeEEEEEEEcC--Ccc----eEEEEEEEEEecc
Q psy573          179 LEDGGEYVCEAENA--VGK----ISASATLTVQSKY  208 (216)
Q Consensus       179 ~~d~g~y~C~~~n~--~~~----~~~~~~l~v~~~p  208 (216)
                      .+|+|.|+|.+.|.  .|.    .+..+.|.|..+|
T Consensus       191 ~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             GGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             hhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            99999999999987  544    2334778887666

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=149.98  Aligned_cols=168  Identities=19%  Similarity=0.283  Sum_probs=128.4

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|..  +.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+..       ...+..|.|.+++.+|+|
T Consensus        74 ~~~~l~v~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-------~~~~~~l~i~~~~~~d~G  144 (262)
T 3rjd_A           74 DPIQLEIHR--GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNG  144 (262)
T ss_dssp             CCEEEEEEC--SSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCE
T ss_pred             ccEEEEEec--cceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-------cCCCCeEEEEECChhhCE
Confidence            344555543  45666677778899999999999855677889999999988732       123567999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCC-cE----EEEeeCCccCCCCCee
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LT----VHWKRLGSAMPEDRMS  165 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~----i~W~~~~~~~~~~~~~  165 (216)
                      .|+|.+.+..+. ....+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+.|. +.    +.|++++..+..    
T Consensus       145 ~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~----  218 (262)
T 3rjd_A          145 TYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG----  218 (262)
T ss_dssp             EEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE----
T ss_pred             EEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc----
Confidence            999999987743 34556777764   44555444 557889999999999988875 43    788998876542    


Q ss_pred             eecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       166 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ......|.|.++..+|+|.|+|.+.|..|..
T Consensus       219 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          219 RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            2345689999999999999999999999974

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.92  E-value=1.6e-23  Score=166.77  Aligned_cols=188  Identities=22%  Similarity=0.340  Sum_probs=144.7

Q ss_pred             hhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573            9 EKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus         9 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      +...+..+.|.|...|+.+.+.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.          .+..|.|.++.
T Consensus       366 g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~~~----------~~~~L~i~~~~  434 (642)
T 1e07_A          366 SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA-ASNPPAQYSWLIDGNIQQ----------HTQELFISNIT  434 (642)
T ss_pred             CCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEc-CccCCCeEEEEECCEEcC----------CCceEEEccCC
Confidence            3344556778887766666677778889999999999998 788999999999998762          23569999999


Q ss_pred             CCCCceEEEEEEcCCCCcc-cceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-
Q psy573           89 KTDDGRYQCVVKNVAGTRE-STDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-  163 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-  163 (216)
                      .+|+|.|+|.+.|..+... +..+.+.+..   +|.+. ......+.+|+.+.|.|.+. .|.+.+.|++++..+.... 
T Consensus       435 ~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~  512 (642)
T 1e07_A          435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSIS-SNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPR  512 (642)
T ss_pred             hhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEe-cCCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCc
Confidence            9999999999999876542 2234455543   33333 33455778999999999998 4788999999998876443 


Q ss_pred             eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEEecce
Q psy573          164 MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQSKYL  209 (216)
Q Consensus       164 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v~~~p~  209 (216)
                      .... .+..|.|.++..+|.|.|+|.+.|..|.. +..+.|.|...|.
T Consensus       513 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~  560 (642)
T 1e07_A          513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD  560 (642)
T ss_pred             EEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC
Confidence            3332 34689999999999999999999999874 4468888886554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=147.90  Aligned_cols=175  Identities=18%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCC---eeEEeeCCEEec----------------cccCceEEEe------cCcEEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPID----------------FENSKRLRLV------DGTNLAI   84 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~---~~~W~~~~~~~~----------------~~~~~~~~~~------~~~~l~i   84 (216)
                      .|+.+.+.+|++++|.|.+ .+.+.+   .+.|++++....                .....++...      .+++|.|
T Consensus         5 ~p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             CCSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             CCCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            4567889999999999998 555544   589999764321                1111222221      1246999


Q ss_pred             cccCCCCCceEEEEEEcCCCCcccceeEEEEeecc-eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR  163 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~  163 (216)
                      .+++.+|+|.|.|.+.+..+........+.+..++ ..........+..|+.+.+.|.+.+.|.|.+.|++++..+....
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence            99999999999999987655443333344443333 22333445566778999999999999999999999987654322


Q ss_pred             eeee-----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          164 MSVL-----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       164 ~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      ....     ..+.|.|.++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            2111     12469999999999999999999999986666665554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.92  E-value=4.6e-24  Score=148.92  Aligned_cols=172  Identities=15%  Similarity=0.189  Sum_probs=114.0

Q ss_pred             cceEEecCCcEEEEeeCCCCCCC---CeeEEeeCCEE-----------ecc----ccCceEEEec------CcEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHP-----------IDF----ENSKRLRLVD------GTNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~---~~~~W~~~~~~-----------~~~----~~~~~~~~~~------~~~l~i~~~   87 (216)
                      +++.+.+|++++|.|.+ .+.+.   ..+.|+|++..           +..    ....+.....      +.+|.|.++
T Consensus        12 ~pV~v~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           12 GPILAMVGEDADLPCHL-FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEE-ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            34788999999999987 33332   37899986532           111    1122333221      247999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccC-CCCC--
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAM-PEDR--  163 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~-~~~~--  163 (216)
                      +.+|+|.|+|.+.+..+..   ...+.+...+..........+.+|..+.|.|.+.+ .|.|.+.|+++++.+ ....  
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~  167 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP  167 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECC
T ss_pred             chHHCeeEEEEEECCCcEE---EEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceE
Confidence            9999999999999876543   23444444443333344557778999999999977 589999999976543 3221  


Q ss_pred             eeeecCCe---EEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          164 MSVLPSRS---LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       164 ~~~~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .....++.   +.+..++.+|+|.|+|.|.|..|...+.+.|.|.++
T Consensus       168 ~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          168 VVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            11222332   334467889999999999999999999988888653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.1e-24  Score=152.93  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=131.4

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+|.+...+....+.+|+.++|.|.+ .+    .+.|++++..+      ......+..|.|.+++.+|+|.|+|.+.+ 
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~-~~----~i~W~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-   78 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCID-PD----FVRWTFKTYFN------EMVENKKNEWIQEKAEATRTGTYTCSNSN-   78 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEEC-TT----EEEEEEECSSS------CEEEECSSEEEETTCCGGGCEEEEEEESS-
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECC-CC----cEEEecCCcce------eeecCCCceEEEeccCHHhCeEEEEEeeC-
Confidence            35667667778899999999999998 44    89999998765      12233457899999999999999999998 


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEe-eCCccCCCCC-eeeecCCeEEEecCCC
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWK-RLGSAMPEDR-MSVLPSRSLQLSDVRL  179 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~-~~~~~~~~~~-~~~~~~~~l~i~~~~~  179 (216)
                       +.  ...+.|.|..+|.....+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+.... ........|.|.++..
T Consensus        79 -g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~  154 (290)
T 2o26_X           79 -GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR  154 (290)
T ss_dssp             -SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCG
T ss_pred             -Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccH
Confidence             32  5567888887776666667778889999999999985 77 899995 6777665433 3344567899999999


Q ss_pred             CCCe-EEEEEEEcCCcc-eEEEEEEEEE
Q psy573          180 EDGG-EYVCEAENAVGK-ISASATLTVQ  205 (216)
Q Consensus       180 ~d~g-~y~C~~~n~~~~-~~~~~~l~v~  205 (216)
                      +|.| .|+|.+.|..+. .+..+.|.|.
T Consensus       155 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          155 AYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             GGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             HHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            9999 999999998665 3335777776

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=2.5e-25  Score=163.94  Aligned_cols=177  Identities=26%  Similarity=0.419  Sum_probs=68.1

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      .....+....+.+|+.+.|.|.+....|.+.+.|++++..+..  ..++.. .++.|.|.+++.+|+|.|+|.+.+. +.
T Consensus        10 p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~--~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~   85 (334)
T 1ry7_B           10 PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QR   85 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCC--cccEEe-ccceEEEeecccccCEEEEEEEEeC-Ce
Confidence            3334477889999999999999833336789999999987732  223322 4568999999999999999999987 43


Q ss_pred             cccceeEEEEeecce----------------------EEeC----CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC
Q psy573          106 RESTDAVLRVLVKPY----------------------IIRG----PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM  159 (216)
Q Consensus       106 ~~~~~~~l~v~~~p~----------------------~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~  159 (216)
                      . ...+.|.|...+.                      +...    .....+..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        86 ~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~  164 (334)
T 1ry7_B           86 V-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF  164 (334)
T ss_dssp             ----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCC
T ss_pred             E-EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEEC
Confidence            2 4445666654331                      1111    12246778999999999999999999999999877


Q ss_pred             CCCCee-----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          160 PEDRMS-----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       160 ~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      ......     ......|.|.++..+|+|.|+|.+.|..|.....+.|.|...
T Consensus       165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             CTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            543211     113457999999999999999999999999888888888863

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.92  E-value=1.5e-24  Score=151.69  Aligned_cols=162  Identities=21%  Similarity=0.350  Sum_probs=117.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEec-----------cccCceEE----------EecCcEEEEccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPID-----------FENSKRLR----------LVDGTNLAIQDS   87 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~-----------~~~~~~~~----------~~~~~~l~i~~~   87 (216)
                      .|....+.+|+.+.|.|.+ .+.+. +.+.|++++....           .....+..          ...++.|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             CCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             CCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            4566789999999999998 66664 7999998643210           00122333          455567999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEeecc---eEEeCCCceeEeCCCcE-EEEEEe-CCCCCcEEEEeeCCccCCCC
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSAGSII-VFECSV-GGDAVLTVHWKRLGSAMPED  162 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~i~W~~~~~~~~~~  162 (216)
                      +.+|+|.|.|.+.+.........+.|.|..+|   .+...+....+..|+.+ .|.|.+ .+.|.+.+.|++++..+...
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccc
Confidence            99999999999998763333566778887664   45555555667788887 999999 88999999999999887644


Q ss_pred             C-----eeeec------------CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          163 R-----MSVLP------------SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       163 ~-----~~~~~------------~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .     .....            .+.|.|.....+|.|.|+|.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          165 VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            3     11111            145777755566699999999994

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.92  E-value=3.6e-25  Score=161.75  Aligned_cols=178  Identities=21%  Similarity=0.255  Sum_probs=124.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.|. .+.+..+.+|+.+.|.|.+....|.+.+.|++++..+....  ++.. .....|.|.+++.+|+|.|+|.+.+.
T Consensus         7 ~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            7 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             CCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC--C-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC--cEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            45554 45568899999999999983333778999999999885332  2222 33468999999999999999999987


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCC----------CCCcEEEEeeCCccCCCC-CeeeecC--
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG----------DAVLTVHWKRLGSAMPED-RMSVLPS--  169 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~i~W~~~~~~~~~~-~~~~~~~--  169 (216)
                      .+.. ...+.|.+...|.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++..+... +......  
T Consensus        84 ~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  162 (317)
T 2y25_A           84 RGKD-KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE  162 (317)
T ss_dssp             SCEE-EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSS
T ss_pred             CCcE-EEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCC
Confidence            7654 3334444443332222222233445666666666554          688999999999887643 3333222  


Q ss_pred             -CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          170 -RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       170 -~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                       ..|.|.++..+|.|.|+|.+.|..|....++.|.+.
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  199 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ  199 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeee
Confidence             349999999999999999999999988888777653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.92  E-value=6.1e-24  Score=146.92  Aligned_cols=172  Identities=19%  Similarity=0.243  Sum_probs=121.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC---EE--ec-------cccCceEEEe---cCcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG---HP--ID-------FENSKRLRLV---DGTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~---~~--~~-------~~~~~~~~~~---~~~~l~i~~~~~   89 (216)
                      +.+...|..+.+.+|+.++|.|.+ .+.+.+.+.||+..   ..  +.       .....++...   .+.+|.|.+++.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES   80 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence            345556777899999999999998 66688899999832   11  10       0112344333   234799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEE---eecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCC-
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDR-  163 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~-  163 (216)
                      +|+|.|.|.+.+..+........|.|   ..+|.+...+....+..|+.+.|.|.+.+.++  +.+.|++++..+.... 
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  160 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVL  160 (213)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             ccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceE
Confidence            99999999998865543444566777   55667766555556667888999999987654  4899999998775431 


Q ss_pred             ee--ee--c------CCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          164 MS--VL--P------SRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       164 ~~--~~--~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ..  ..  .      ...|.|.....+|.|.|+|.+.|......
T Consensus       161 ~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          161 QSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA  204 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             eccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence            00  00  1      13577788888889999999999875533

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.92  E-value=9.6e-24  Score=155.19  Aligned_cols=188  Identities=17%  Similarity=0.237  Sum_probs=130.7

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCC----CCCeeEEeeCC--E-------------EeccccCceEEEe----cCc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGH----PEPTLVWKKNG--H-------------PIDFENSKRLRLV----DGT   80 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~----~~~~~~W~~~~--~-------------~~~~~~~~~~~~~----~~~   80 (216)
                      ++.+...+..+.+.+|+.++|.|.+ .+.    +.+.+.|++++  .             .+.....+++.+.    .+.
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   92 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSF-ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG   92 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBC-SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeec-CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCc
Confidence            3445556667899999999999998 443    44579999954  1             1112234455543    245


Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEE--eCCCceeEeCC---CcEEEEEE-eCCCCCcEEEEee
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII--RGPKDTTVSAG---SIIVFECS-VGGDAVLTVHWKR  154 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g---~~~~l~C~-~~~~p~~~i~W~~  154 (216)
                      +|.|.+++.+|+|.|.|.+.+.........+.|.|..+|.+.  ..+....+.+|   +.+.|.|. ..+.|.+.+.|++
T Consensus        93 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             eEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            799999999999999998554332234556788888877663  34556677788   77999998 7888999999999


Q ss_pred             CCccCCC------CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          155 LGSAMPE------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       155 ~~~~~~~------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      ++.....      ..........|.|..+..+|+|.|+|.+.|..+..+.++.|.|..+|.+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~  236 (331)
T 3u83_A          173 RLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTI  236 (331)
T ss_dssp             SSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEE
T ss_pred             CCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEE
Confidence            6332111      111111124588888899999999999999999988899999988876553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.92  E-value=5.5e-24  Score=149.42  Aligned_cols=174  Identities=15%  Similarity=0.212  Sum_probs=121.4

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~   89 (216)
                      +.+...|....+.+|++++|.|.+ .+.+.+.+.||+..  .   .+       ......++...   .+.+|.|.+++.
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            345566777899999999999998 56678899999842  1   11       01112334333   345799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEE---eecceEEeCCCceeEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCC-
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR-  163 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~-  163 (216)
                      +|+|.|.|.+.+..+........+.|   ..+|.+...+....+..|+.+.|.|.+.+. | .+.+.|++++..+.... 
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~  183 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ  183 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence            99999999998766533334455666   345555554444445568889999999774 4 57999999998776431 


Q ss_pred             ----------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          164 ----------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       164 ----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                                ........|.|.....+|+|.|+|.|.|........
T Consensus       184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence                      011112458888888899999999999998654433

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.8e-23  Score=150.03  Aligned_cols=167  Identities=14%  Similarity=0.199  Sum_probs=120.8

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      ..+.+|+.+.|.|.+ . .|.+.+.|++.+......  ..  ......+.    ...|+|.|+|.+.+..+...+..+.+
T Consensus       105 ~~v~~G~~v~l~C~~-~-~p~~~v~w~~~~~~~~~~--~~--~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l  174 (289)
T 3mjg_X          105 IFLTEITEITIPCRV-T-DPQLVVTLHEKKGDVALP--VP--YDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYV  174 (289)
T ss_dssp             EEESSCCCEEECCCB-S-CTTSCEEEEESSCCSCCC--CC--EETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEE
T ss_pred             EEeecCCeEEEEeEc-C-CCCceEEEEeCCCCCccc--ee--ecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEE
Confidence            678999999999998 3 677888898865322111  00  11111222    36799999999987665544555566


Q ss_pred             EEee--cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceee-------ecCCeEEEecCCCCCC
Q psy573          114 RVLV--KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSV-------LPSRSLQLSDVRLEDG  182 (216)
Q Consensus       114 ~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~-------~~~~~l~i~~~~~~d~  182 (216)
                      .+..  +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++......  ....       .....|.|.++..+|.
T Consensus       175 ~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  254 (289)
T 3mjg_X          175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDS  254 (289)
T ss_dssp             EECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCC
T ss_pred             EecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhC
Confidence            6654  555555555577899999999999999999999999877643221  1111       1225799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          183 GEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      |.|+|.+.|..|....+..|.|...|.+
T Consensus       255 G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          255 GTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             cEEEEEeecCCCCceeEEEEEEEEEecC
Confidence            9999999999999999999999977654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=162.01  Aligned_cols=191  Identities=21%  Similarity=0.332  Sum_probs=138.1

Q ss_pred             hhceeeEEeeccce-EecccceEEecCCcEEEEeeC----CCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEccc
Q psy573           14 EKKKLKIEMLREEF-RVQPKSQRVAAGDTALLECGP----PRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDS   87 (216)
Q Consensus        14 ~~~~l~v~~~~~~~-~~~~~~~~~~~G~~~~l~C~~----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~   87 (216)
                      ..+.|.|...++.. ........+.+|+.+.|.|.+    ..+.|.+.+.|++++..+.... .++.... .+.|.|.++
T Consensus       109 ~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~-~~~~~~~~~~~L~i~~v  187 (339)
T 3o4o_C          109 MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN-EKFLSVRGTTHLLVHDV  187 (339)
T ss_dssp             EEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC-SSEEECTTSSEEEESSC
T ss_pred             EEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC-ceeEEcCCcceEEEccc
Confidence            34555555443221 122233578899999999983    2677889999999998874332 3444443 358999999


Q ss_pred             CCCCCceEEEEEEcCCCCc---ccceeEEEEee-----cceEEeCCCceeEeCCCcEEEEEEe---CCCC-CcEEEEeeC
Q psy573           88 RKTDDGRYQCVVKNVAGTR---ESTDAVLRVLV-----KPYIIRGPKDTTVSAGSIIVFECSV---GGDA-VLTVHWKRL  155 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~---~~~~~~l~v~~-----~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~~~i~W~~~  155 (216)
                      +.+|+|.|+|.+.+..+..   ....+.|.|..     +|.+...+....+..|+.+.|.|.+   .+.| .+.+.|+++
T Consensus       188 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~  267 (339)
T 3o4o_C          188 ALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN  267 (339)
T ss_dssp             CGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESS
T ss_pred             CHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEEC
Confidence            9999999999999876532   24456677763     4566666666688899999999999   8888 889999999


Q ss_pred             CccCCCC----------CeeeecCC------eEEEecCCCCCC-eEEEEEEEcCCcceEEEEEEEEE
Q psy573          156 GSAMPED----------RMSVLPSR------SLQLSDVRLEDG-GEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       156 ~~~~~~~----------~~~~~~~~------~l~i~~~~~~d~-g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      +..+...          +......+      .|.|.++..+|. |.|+|.|.|..|+.+..+.+.+.
T Consensus       268 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             CeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            8765321          11122223      799999999997 99999999999998877766544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.92  E-value=4.1e-24  Score=152.67  Aligned_cols=172  Identities=20%  Similarity=0.297  Sum_probs=128.9

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|...++ ..+.+....+.+|+.+.|.|.+ .  |.+.+.|  +|..+....       ..+.|.|..+..+|.|
T Consensus        89 ~~~~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~-------~~~~l~i~~~~~~~~g  155 (265)
T 2oz4_A           89 TLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLG-------PRAQLLLKATPEDNGR  155 (265)
T ss_dssp             EEEEEEEECCCC-CEEEESCSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCS-------SEECCEEECCGGGTTE
T ss_pred             EEEEEEEeCCCC-ceeecCCceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCC-------CcEEEEEccccccCCc
Confidence            456666665433 3344556778999999999998 3  8889999  766652111       1245889999999999


Q ss_pred             eEEEEEEcCC-CCcc--cceeEEEEeecceEEeC--CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec
Q psy573           94 RYQCVVKNVA-GTRE--STDAVLRVLVKPYIIRG--PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP  168 (216)
Q Consensus        94 ~y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  168 (216)
                      .|+|.+.+.. |...  ...+.|.|..+|.+...  +....+.+|+.+.|.|.+.+.|.|.+.|++++..+       ..
T Consensus       156 ~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~-------~~  228 (265)
T 2oz4_A          156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------LP  228 (265)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE-------CC
T ss_pred             eEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc-------CC
Confidence            9999997544 4432  25677888888876443  34568889999999999999999999999998721       12


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .+.+.  .+..+|+|.|+|.+.|..|..+..+.|.|.++
T Consensus       229 ~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          229 IGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             TTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            22332  37889999999999999999999999988753

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.91  E-value=3e-23  Score=142.31  Aligned_cols=162  Identities=20%  Similarity=0.256  Sum_probs=114.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceEE-EecCcEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLR-LVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...|. ..+.+|++++|.|.+ . .+.+.+.|||++..+..... .... ...+..|.|.+++.+|+|.|+|.+.+
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            455666665 678999999999998 3 46779999999875421110 0000 11245799999999999999999976


Q ss_pred             CCC----CcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC--eeee---cC
Q psy573          102 VAG----TRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVL---PS  169 (216)
Q Consensus       102 ~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~---~~  169 (216)
                      ...    ...+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+.+ +.+.+.|+|++..+....  ....   ..
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~  162 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQ  162 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEE
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceE
Confidence            421    1224456677754   355555444 47889999999999975 567899999998765321  1111   14


Q ss_pred             CeEEEecCCCCCCeEEEEEEEcC
Q psy573          170 RSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ..|.|.+++  |+|.|+|.+.+.
T Consensus       163 ~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          163 ADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEECC--SCEEEEEEEEET
T ss_pred             EEEEeCCcC--CCeeEEEEEEcC
Confidence            579999998  999999999865

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.91  E-value=7.9e-24  Score=146.29  Aligned_cols=172  Identities=17%  Similarity=0.210  Sum_probs=118.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCC--EEec----------cccCceEEEec---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNG--HPID----------FENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~--~~~~----------~~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      +.. |....+.+|+.++|.|.+ .+.+   .+.+.||+++  ..+.          .....++....   ...|.|.+++
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   81 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   81 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EEC-CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence            344 777889999999999998 5555   4789999852  2220          01123443322   2479999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCC
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPED  162 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~  162 (216)
                      .+|+|.|.|.+.+..+........|.|.    .+|.+...+....+..|+.+.|.|.+.+.+++  .+.|++++..+...
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence            9999999999998765433334556663    45666554444445578899999999875433  89999999877543


Q ss_pred             Cee----eec------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          163 RMS----VLP------SRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       163 ~~~----~~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ...    ...      ...|.|.....+|.|.|+|.|.|......+++
T Consensus       162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          162 METTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            211    111      13588888888999999999999876654443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.91  E-value=4.5e-24  Score=151.48  Aligned_cols=172  Identities=20%  Similarity=0.231  Sum_probs=120.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-----CCeeEEeeCC--EEe----------ccccCceEEEec---CcEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HPI----------DFENSKRLRLVD---GTNLA   83 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-----~~~~~W~~~~--~~~----------~~~~~~~~~~~~---~~~l~   83 (216)
                      ++.+...|..+.+.+|++++|.|.+ .+.+     .+.+.||+++  ..+          ......++....   ..+|.
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  116 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLK  116 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeec-cCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEE
Confidence            4667777888999999999999998 5555     4899999843  211          111223444332   23799


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCcc
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSA  158 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~  158 (216)
                      |.+++.+|+|.|.|.+.+..+........+.|..   +|.+...+.......|+.+.|.|.+.+. |. +.+.|++++..
T Consensus       117 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~  196 (254)
T 2c1o_A          117 ISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  196 (254)
T ss_dssp             ESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSE
T ss_pred             ECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCc
Confidence            9999999999999999887554333334566653   4666554443334467899999999774 43 46999999987


Q ss_pred             CCCC-Cee----------eecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          159 MPED-RMS----------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       159 ~~~~-~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      +... ...          ....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       197 l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          197 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             ccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            6544 110          1112469999999999999999999987764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.91  E-value=2.9e-23  Score=147.29  Aligned_cols=183  Identities=17%  Similarity=0.269  Sum_probs=124.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEec-----CcEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVD-----GTNL   82 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~-----~~~l   82 (216)
                      +...|.++.+.+|+.++|.|.+ .+.  +.+.+.||+.  +...               ......++....     ..+|
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   82 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTA-SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL   82 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEe-eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence            3456667889999999999997 443  3679999982  1111               011223444432     1259


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcccceeEEEEee---------------cceEEeCCCceeEeCCCcEEEEEEeCCCCC
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSAGSIIVFECSVGGDAV  147 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  147 (216)
                      .|.+++.+|+|.|.|.+.+..+........|.|..               ++.+...+....+.+|+++.|.|.+.+.+.
T Consensus        83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred             EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence            99999999999999999986554334456677764               355666667788999999999999998887


Q ss_pred             c----EEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEE
Q psy573          148 L----TVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTV  204 (216)
Q Consensus       148 ~----~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v  204 (216)
                      +    .+.|+++..  .+.             ..+....   ....|.|.+++.+|+|.|.|.+.|..+. ...-..|.|
T Consensus       163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence            6    899998532  111             1222211   1235999999999999999999987644 333456677


Q ss_pred             Eeccee
Q psy573          205 QSKYLK  210 (216)
Q Consensus       205 ~~~p~~  210 (216)
                      ...+.+
T Consensus       243 ~~~~~~  248 (253)
T 3uzq_A          243 KRPLEH  248 (253)
T ss_dssp             CCC---
T ss_pred             cCCCCC
Confidence            755443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.91  E-value=3.4e-23  Score=168.92  Aligned_cols=193  Identities=23%  Similarity=0.470  Sum_probs=148.4

Q ss_pred             hceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCc
Q psy573           15 KKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDG   93 (216)
Q Consensus        15 ~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g   93 (216)
                      .+.|.|..  +.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ..+.....+++|.|.++. .+|+|
T Consensus       519 ~~~l~V~~--~p~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~~l~i~~v~~~~d~G  593 (816)
T 3dmk_A          519 SAKLNVYG--LPYIRQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALPI--NRKQKVFPNGTLIIENVERNSDQA  593 (816)
T ss_dssp             EEEEEECS--SCEECCCCCEEEETTCCEEEECCE-ECSSEEEEEEEETTEESCC--STTEEECTTSEEEESSCCHHHHCE
T ss_pred             EEEEEEec--CCeeEccCCeEEecCCeEEEEEEe-cCCCCCEEEEEECCeEccc--CCceEEecCCeEEEEecCccccCE
Confidence            34444443  234445556788999999999998 6778889999999998743  344555667899999998 68999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecceEEe-CCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCC-Ceeee---
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPED-RMSVL---  167 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~-~~~~~---  167 (216)
                      .|+|.+.|..+......+.+.+..+|.+.. ......+..|+.+.|.|.+.+.+. +.+.|++++..+... .....   
T Consensus       594 ~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~  673 (816)
T 3dmk_A          594 TYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG  673 (816)
T ss_dssp             EEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEET
T ss_pred             EEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcC
Confidence            999999998876555566777777775543 234557889999999999976654 489999999877532 11111   


Q ss_pred             -cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          168 -PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       168 -~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                       ....|.|.++..+|+|.|+|.+.|..|....++.|.|..+|.+..
T Consensus       674 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~  719 (816)
T 3dmk_A          674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWIL  719 (816)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEE
T ss_pred             CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceee
Confidence             235799999999999999999999999999999999998887654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.91  E-value=5.9e-23  Score=161.81  Aligned_cols=178  Identities=21%  Similarity=0.312  Sum_probs=136.4

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCC---CeeEEeeCCEEec------------cccCceEEEec---C--cEEEEcccC
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHPID------------FENSKRLRLVD---G--TNLAIQDSR   88 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~---~~~~W~~~~~~~~------------~~~~~~~~~~~---~--~~l~i~~~~   88 (216)
                      ..|..+.+.+|+.++|.|.+ .+.+.   ..+.|++++....            ....+++.+..   +  ..|.|.+++
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYY-PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             cCcceeEEecCCcEEEEEeC-CCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            45667889999999999998 55443   3899999875321            11223444432   2  369999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccCC-------
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMP-------  160 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~-------  160 (216)
                      .+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+. +.+.+.|++++....       
T Consensus        84 ~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             cccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            999999999998877654 55688889999988877888899999999999999865 457799999876431       


Q ss_pred             -------CCCeeeecCC------eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          161 -------EDRMSVLPSR------SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       161 -------~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                             ..+......+      .|.|.++..+|+|.|+|.+.|..|.....+.|.|..++
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  223 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE  223 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC
Confidence                   1223332222      69999999999999999999999998888888888654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.91  E-value=1.6e-23  Score=156.09  Aligned_cols=158  Identities=15%  Similarity=0.170  Sum_probs=123.4

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      ..+.+|+.++|.|.+ .+.|.+.+.|++++..+         ...+..|.|.+++.+|+|.|+|.+.+..+.. ...+.+
T Consensus       106 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l  174 (363)
T 1wio_A          106 THLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDI  174 (363)
T ss_dssp             SSEESBSCEEEEEEC-CTTCCCCEEEECSSSCE---------EEESSEEEECSBCGGGCEECEEEEEETTEEE-EECCEE
T ss_pred             eEEecCCCEEEEEEc-CCCCCCeEEEEcCCCcc---------cccceEEEEeeCChhcCCEEEEEEecCCCeE-EEEEEE
Confidence            467899999999998 66888999999987654         2345789999999999999999999764432 344556


Q ss_pred             EEeecceEEeCCCceeEeCCCcEEEEEEeCC-----CCCcEEEEeeCCccCCC--------C-Ceeee-----------c
Q psy573          114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-----DAVLTVHWKRLGSAMPE--------D-RMSVL-----------P  168 (216)
Q Consensus       114 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~--------~-~~~~~-----------~  168 (216)
                      .|...|...   ....+.+|+.+.|.|.+.+     .|.+.+.|++++..+..        . +....           .
T Consensus       175 ~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (363)
T 1wio_A          175 VVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGK  251 (363)
T ss_dssp             CEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCS
T ss_pred             EEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhccc
Confidence            666544322   4456788999999998877     77889999999987654        2 22221           2


Q ss_pred             --CCeEEEecCCCCCCeEEEEEEEcC--CcceEEEEEEEEE
Q psy573          169 --SRSLQLSDVRLEDGGEYVCEAENA--VGKISASATLTVQ  205 (216)
Q Consensus       169 --~~~l~i~~~~~~d~g~y~C~~~n~--~~~~~~~~~l~v~  205 (216)
                        ...|.|.++..+|+|.|+|.+.|.  .|.....+.|.|.
T Consensus       252 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          252 KLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             SSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             CCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence              348999999999999999999999  8988888888776

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.91  E-value=1.2e-24  Score=150.24  Aligned_cols=166  Identities=16%  Similarity=0.252  Sum_probs=119.4

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec---c-------ccCceEEEe---cCcEEEEcccCCCCCceEEE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID---F-------ENSKRLRLV---DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~---~-------~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C   97 (216)
                      .+.+.+|+.++|.|.+ .  +.+.+.||++  +....   .       ....++...   .+.+|.|.+++.+|+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~-~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTG-T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEEC-C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEE-C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEE
Confidence            7789999999999998 3  7889999994  22110   0       012333322   23479999999999999999


Q ss_pred             EEEcCCC-CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe----ee
Q psy573           98 VVKNVAG-TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM----SV  166 (216)
Q Consensus        98 ~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~----~~  166 (216)
                      .+.+..+ ........|.|.    .+|.+...+....+..|+.+.|.|.+.+.  |.+.+.|++++..+.....    ..
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  165 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSK  165 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             EEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceE
Confidence            9998776 233455677777    56666665555555579999999999875  3578999999987654211    01


Q ss_pred             e------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          167 L------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       167 ~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .      ....|.|..+..+|.|.|+|.+.|..+...+++.
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          166 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             CTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            1      1145888888888999999999999877666653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.91  E-value=4.7e-23  Score=146.46  Aligned_cols=179  Identities=20%  Similarity=0.292  Sum_probs=125.0

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEec---------------cccCceEEEec-----CcEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLAI   84 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~~---------------~~~~~~~~~~~-----~~~l~i   84 (216)
                      ..|....+.+|+.++|.|.+ .+.+  .+.+.||++  +..+.               .....++....     ..+|.|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             ECCCCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            34566789999999999998 5544  579999984  22110               01234554432     247999


Q ss_pred             cccCCCCCceEEEEEEcCCCC----cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-----EEEEee-
Q psy573           85 QDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-----TVHWKR-  154 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~i~W~~-  154 (216)
                      .+++.+|+|.|.|.+.+..+.    .......|.|..++.+...+....+.+|+++.|.|.+.+.|.+     .+.|++ 
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            999999999999999987542    1223467778777777666777789999999999999888765     899999 


Q ss_pred             -CCccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecc
Q psy573          155 -LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKY  208 (216)
Q Consensus       155 -~~~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p  208 (216)
                       ++..+.             ..++...   ....|.|.+++.+|+|.|+|.+.|.... ......|.|..++
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence             444321             1222221   2246999999999999999999985433 3334456666444

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=2.7e-24  Score=161.67  Aligned_cols=175  Identities=22%  Similarity=0.346  Sum_probs=132.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.|...|....+.+|+.+.|.|.+ .+ .|.+.+.|++++..+............+++|.|.+++.+|+|.|+|.+.+.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   84 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   84 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEE-ecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeC
Confidence            5788888889999999999999998 45 788999999999887544333333345678999999999999999999997


Q ss_pred             CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCc---cCC-----CCCeeeecCCeEE
Q psy573          103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGS---AMP-----EDRMSVLPSRSLQ  173 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~---~~~-----~~~~~~~~~~~l~  173 (216)
                      .+...+..+.+.+...+.....+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   ...     ..+.....++.|.
T Consensus        85 ~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  164 (395)
T 1bih_A           85 AGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY  164 (395)
T ss_dssp             TEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEE
T ss_pred             CCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEE
Confidence            7654444455555432211112334567789999999996 778899999999862   111     2344455667899


Q ss_pred             EecCCCCCCe---EEEEEEEcCCcceEEE
Q psy573          174 LSDVRLEDGG---EYVCEAENAVGKISAS  199 (216)
Q Consensus       174 i~~~~~~d~g---~y~C~~~n~~~~~~~~  199 (216)
                      |.++..+|.|   .|+|.+.|..+.....
T Consensus       165 i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~  193 (395)
T 1bih_A          165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVV  193 (395)
T ss_dssp             EEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred             EEEEeeccCCCceEEEEEEEecccceEEE
Confidence            9999999999   9999999998874443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.91  E-value=1.3e-22  Score=136.60  Aligned_cols=157  Identities=17%  Similarity=0.220  Sum_probs=115.9

Q ss_pred             ccceEEecCCcEEEEeeCCC-CCCCCeeEEee--CCEEecc--------ccCceEEEecCcEEEEcccCCCCCceEEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPR-GHPEPTLVWKK--NGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~--~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +..+...+|++++|.|.... +.+.+.+.|++  ++..+..        ....++.+..+++|.|.+++.+|+|.|.|.+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            45578899999999995422 34567999999  8776521        2356677777889999999999999999999


Q ss_pred             EcCCCCcc-cceeEEEEeec---ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEe
Q psy573          100 KNVAGTRE-STDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS  175 (216)
Q Consensus       100 ~~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~  175 (216)
                      .+..+... ...+.|.|..+   |.+..        .+..+.|.|.+.+.|.+.+.|++++..+.      .....+.+.
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~------~~~~~i~~~  151 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLK------LSQRVITHK  151 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEE------EESSCEEEE
T ss_pred             EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECC------CCCcEEEEe
Confidence            98776542 23456666643   22222        23478999999998999999999998761      123334443


Q ss_pred             cCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          176 DVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       176 ~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      . ..+|.|.|+|.|.|..+..+....+
T Consensus       152 ~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          152 W-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             C-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             c-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            3 4789999999999999998777655

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.91  E-value=3.8e-23  Score=146.96  Aligned_cols=179  Identities=18%  Similarity=0.272  Sum_probs=120.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EE---e------------ccccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I------------DFENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~---~------------~~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .+....+.+|++++|.|.+ .+.+  .+.+.||+..  ..   +            ......++....     ..+|.|.
T Consensus         8 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR   86 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ccCceEEcCCCCEEEEEEE-ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence            3445678999999999997 4544  5789999842  11   1            011223444432     2359999


Q ss_pred             ccCCCCCceEEEEEEcCCC---CcccceeEEEEee----------------cceEEeCCCceeEeCCCcEEEEEEeCCCC
Q psy573           86 DSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV----------------KPYIIRGPKDTTVSAGSIIVFECSVGGDA  146 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  146 (216)
                      +++.+|+|.|.|.+.+...   ........|.|..                ++.+...+....+.+|+.+.|.|.+.+.+
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  166 (256)
T 3umt_A           87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDI  166 (256)
T ss_dssp             SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCC
Confidence            9999999999999987621   1123345677764                55666667778899999999999999988


Q ss_pred             CcEEEEeeCC--ccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEec
Q psy573          147 VLTVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSK  207 (216)
Q Consensus       147 ~~~i~W~~~~--~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~  207 (216)
                      .+.+.|+++.  ..+.             ..+....   ...+|.|.+++.+|+|.|.|.+.|.... ......|.|...
T Consensus       167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            8899999853  1111             1222221   1235999999999999999999986543 334566777765


Q ss_pred             ce
Q psy573          208 YL  209 (216)
Q Consensus       208 p~  209 (216)
                      +.
T Consensus       247 ~~  248 (256)
T 3umt_A          247 AA  248 (256)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.91  E-value=8.9e-23  Score=139.85  Aligned_cols=166  Identities=18%  Similarity=0.302  Sum_probs=116.0

Q ss_pred             ceEEecCCcEEEEeeCCC---CCCCCeeEEeeCCEEeccc----------cCceEEE--ecCcEEEEcccCCCCCceEEE
Q psy573           33 SQRVAAGDTALLECGPPR---GHPEPTLVWKKNGHPIDFE----------NSKRLRL--VDGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~---~~~~~~~~W~~~~~~~~~~----------~~~~~~~--~~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ++.+.+|++++|.|.+..   +.+.+.+.|++++..+...          ..++..+  ..+.+|.|.+++.+|+|.|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            467899999999998832   2256789999998876211          1222222  235689999999999999999


Q ss_pred             EEEcCCCCcc----cceeEEEEeec---ceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeee--
Q psy573           98 VVKNVAGTRE----STDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL--  167 (216)
Q Consensus        98 ~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~--  167 (216)
                      .+.+..+...    ...+.|.|..+   |.+...    ....|+.+.|.|.+ .+.|.|.+.|++++..+........  
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            9998765432    23556666654   333221    12458889999999 4899999999999987764432222  


Q ss_pred             cC-CeE---EEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          168 PS-RSL---QLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       168 ~~-~~l---~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      .. +.+   .+..+..+|.|.|+|.|.|..|..+..+++
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            22 222   224456689999999999999988877654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.91  E-value=2.6e-23  Score=151.51  Aligned_cols=182  Identities=18%  Similarity=0.268  Sum_probs=127.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe---------------ccccCceEEEe----cCcEEEEcccCCCC
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI---------------DFENSKRLRLV----DGTNLAIQDSRKTD   91 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~---------------~~~~~~~~~~~----~~~~l~i~~~~~~d   91 (216)
                      +..+.+.+|++++|.|.+..+.+.+.+.|+|++...               ......+....    .+.+|.|.+++.+|
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            345788999999999998444555689999854321               11122333332    23579999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeecceE--EeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeee-
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVKPYI--IRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL-  167 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~--~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~-  167 (216)
                      +|.|+|.+.+...........+.+...|..  ...+.......|+.+.|.|.+ .+.|.+.+.|++++..+........ 
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            999999998765443344556666655543  344445556678899999985 6789999999999987653322211 


Q ss_pred             ----cCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecceeee
Q psy573          168 ----PSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQSKYLKVI  212 (216)
Q Consensus       168 ----~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~~~p~~~~  212 (216)
                          ..+.|.|..+..+|.|.|+|.+.|..+.  ...++.|.|..+|.+..
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~  216 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSV  216 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECC
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEE
Confidence                1246899999999999999999998766  45566666777776543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.91  E-value=9.6e-24  Score=160.06  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=118.2

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      ..+..|+.+.|.|.+ .+.|.|.+.|++++........ ..... .....+     ...|+|.|.|.+.|..|......+
T Consensus       149 ~~~~~~~~~~L~C~a-~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~~~~  222 (423)
T 3qs7_E          149 YFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-----HELFGTDIRCCARNELGRECTRLF  222 (423)
T ss_dssp             EEEECSSSSCEEEEE-EESSCCEEEEEEC-------------CEEECCSEE-----CCCCSSCEEEEEECSSCEEEEECE
T ss_pred             cEeccCCceEEEEEE-eeecCCeEEEEECCCCCccccccccccccccceEE-----ecccCeEEEEEEEcCCCCcceeeE
Confidence            345678999999998 8899999999998775421100 00001 111112     578999999999998876544446


Q ss_pred             EEEEeecceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCee----------eecCCeEEEecCCCC
Q psy573          112 VLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMS----------VLPSRSLQLSDVRLE  180 (216)
Q Consensus       112 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~  180 (216)
                      .|.|..+|..  .+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......          ......|.|.++..+
T Consensus       223 ~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  300 (423)
T 3qs7_E          223 TIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN  300 (423)
T ss_dssp             EEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTT
T ss_pred             EEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHH
Confidence            6777666543  445678889999999999988 677999999999877543211          112246999999999


Q ss_pred             CCeEEEEEEEcCCcceEEEEEEEEEecceee
Q psy573          181 DGGEYVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       181 d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |+|.|+|.|.|.   ...++.|.|..+|.+.
T Consensus       301 D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~  328 (423)
T 3qs7_E          301 DTGYYTCSSSKH---PSQSALVTIVEKGFIN  328 (423)
T ss_dssp             TCEEEEEEETTE---EEEEEEEEEESSCEEE
T ss_pred             HCEEEEEEEecC---CCceEEEEEEeCCcce
Confidence            999999999998   6777888888776543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.91  E-value=5.7e-24  Score=147.55  Aligned_cols=173  Identities=17%  Similarity=0.250  Sum_probs=118.3

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCC---E--Ee-----------ccccCceEEEe---cCcEEEEc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG---H--PI-----------DFENSKRLRLV---DGTNLAIQ   85 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~---~--~~-----------~~~~~~~~~~~---~~~~l~i~   85 (216)
                      .+...| .+.+.+|+.++|.|.+ .+. +.+.+.||+..   .  .+           ......++...   .+.+|.|.
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             eEEeCC-cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            344455 7889999999999998 666 78899999831   1  01           01111233332   23469999


Q ss_pred             ccCCCCCceEEEEEEcCCC----CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeC
Q psy573           86 DSRKTDDGRYQCVVKNVAG----TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRL  155 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~  155 (216)
                      +++.+|+|.|.|.+.+..+    ........|.|.    .+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            9999999999999988664    122345577776    4566655444445556789999999987 4666 8999999


Q ss_pred             CccCCCCCe---------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          156 GSAMPEDRM---------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       156 ~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      +..+.....         .....+.|.|.....+|.|.|+|.|.|..+....++
T Consensus       161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            987754210         011113477777878889999999999987766554

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.91  E-value=9e-23  Score=146.57  Aligned_cols=168  Identities=16%  Similarity=0.272  Sum_probs=116.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Eecc-------ccCceEEEec---CcEEEEcccC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PIDF-------ENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~~~-------~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      .+.+...|..+.+.+|+.++|.|.+ .+.+.+.+.||+++.     .+..       ....++....   ..+|.|.+++
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence            3456667778889999999999998 667788999998542     1210       1123444332   2379999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeecce--------------EEeCCCceeEeCCCcEEEEEEeCCCC--CcEEEE
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY--------------IIRGPKDTTVSAGSIIVFECSVGGDA--VLTVHW  152 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W  152 (216)
                      .+|+|.|.|.+.+..+........|.|..++.              ....+....+.+|+.+.|.|.+.+.+  .+.+.|
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W  170 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW  170 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence            99999999999986544333345666665431              22334567888999999999998776  588999


Q ss_pred             eeCCc--cC------------------CCCCeeeec-----CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          153 KRLGS--AM------------------PEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       153 ~~~~~--~~------------------~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ++++.  .+                  ...++....     ...|.|.+++.+|+|.|.|.+.|.
T Consensus       171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            99641  11                  112333221     137999999999999999999997

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.91  E-value=7e-24  Score=145.70  Aligned_cols=152  Identities=21%  Similarity=0.344  Sum_probs=109.0

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +.+|+.++|.|.+    |.+.+.|+|++..+...      ...+..|.|.+++.+|+|.|+|.+.+..    +..+.+.+
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v   80 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYY   80 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEE
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEE
Confidence            3589999999976    67899999999887421      1235679999999999999999964422    22234444


Q ss_pred             ee-------------------------------cceEEeCCCceeEe-CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-
Q psy573          116 LV-------------------------------KPYIIRGPKDTTVS-AGSIIVFECSVGGDAVLTVHWKRLGSAMPED-  162 (216)
Q Consensus       116 ~~-------------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-  162 (216)
                      ..                               .+.+...+  ..+. +|+.+.|.|.  +.|.+.+.|++++..+... 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~  156 (204)
T 1sy6_A           81 RMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP--YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDE  156 (204)
T ss_dssp             EC------------------------------------CCC--CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCT
T ss_pred             EEeccccccccccccccccccccccccccccccccceecCC--ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCcc
Confidence            30                               11111111  2344 8999999999  6788899999999876542 


Q ss_pred             --CeeeecCCeEEEecC-CCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573          163 --RMSVLPSRSLQLSDV-RLEDGGEYVCEAENAVGK-ISASATLTVQ  205 (216)
Q Consensus       163 --~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~~~-~~~~~~l~v~  205 (216)
                        .......+.|.|.++ ..+|+|.|+|.+.|..|. .+..+.|.++
T Consensus       157 ~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             TCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             CCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence              222235788999999 999999999999999997 4556666543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.91  E-value=1.5e-22  Score=143.35  Aligned_cols=166  Identities=17%  Similarity=0.253  Sum_probs=114.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEe-------ccccCceEEEec---CcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPI-------DFENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~-------~~~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      ..+...|..+.+.+|+.++|.|.+ .+.+.+.+.||+..     ..+       ......++....   ..+|.|.+++.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            345556777889999999999998 67788899999853     111       011123333322   23799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec-------------------ceEEeCCCceeEeCCCcEEEEEEeCCCC--Cc
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------------------PYIIRGPKDTTVSAGSIIVFECSVGGDA--VL  148 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~  148 (216)
                      +|+|.|.|.+.+..+........|.|..+                   +.....+....+.+|+.+.|.|.+.+.+  .+
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  163 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS  163 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence            99999999998865543344456666653                   2233344566788999999999998776  77


Q ss_pred             EEEEeeC--CccCC------------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEc
Q psy573          149 TVHWKRL--GSAMP------------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       149 ~i~W~~~--~~~~~------------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+.|+++  +..+.                  ..++....     ..+|.|.+++.+|+|.|.|.+.+
T Consensus       164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            8999997  33221                  02222221     12699999999999999999997

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.90  E-value=7.8e-23  Score=145.33  Aligned_cols=181  Identities=17%  Similarity=0.243  Sum_probs=123.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc--------ccCceEEEe-----cCcEEEEccc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF--------ENSKRLRLV-----DGTNLAIQDS   87 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~--------~~~~~~~~~-----~~~~l~i~~~   87 (216)
                      .+...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+..        ....++...     ...+|.|.++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             EEEecCceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            45566777899999999999998 66688899999832  1   1100        112233321     1246999999


Q ss_pred             CCCCCceEEEEEEcCCCC---cccceeEEEEee--------------------cceEEeCCCceeEeCCCcEEEEEEeCC
Q psy573           88 RKTDDGRYQCVVKNVAGT---RESTDAVLRVLV--------------------KPYIIRGPKDTTVSAGSIIVFECSVGG  144 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~  144 (216)
                      +.+|+|.|.|.+.+..+.   .......|.|..                    ++.+...+....+.+|+.+.|.|.+.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            999999999999886532   112334666664                    456677777778889999999999987


Q ss_pred             CCCcEEEEeeCCccCC------------------CCCeeee----cCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEE
Q psy573          145 DAVLTVHWKRLGSAMP------------------EDRMSVL----PSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASA  200 (216)
Q Consensus       145 ~p~~~i~W~~~~~~~~------------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~  200 (216)
                      . .+.+.|++......                  ..++...    ....|.|.+++.+|+|.|.|.+.|..|.  ...-.
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt  242 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGS  242 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCe
Confidence            6 67899998432110                  1111111    2247999999999999999999988764  22234


Q ss_pred             EEEEEecc
Q psy573          201 TLTVQSKY  208 (216)
Q Consensus       201 ~l~v~~~p  208 (216)
                      .|.|...+
T Consensus       243 ~l~v~~~~  250 (256)
T 3tf7_C          243 KLTVLELE  250 (256)
T ss_dssp             EEEEECGG
T ss_pred             EEEEEccc
Confidence            45555443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.90  E-value=8.6e-24  Score=155.33  Aligned_cols=168  Identities=21%  Similarity=0.377  Sum_probs=118.9

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCCEEec---cc----cCceEEE--------ecCcEEEEcccCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPID---FE----NSKRLRL--------VDGTNLAIQDSRK   89 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~~~~---~~----~~~~~~~--------~~~~~l~i~~~~~   89 (216)
                      .+...|..+.+.+|+.+.|.|.+ .+. |.+.+.||+++....   ..    ...++..        ..+..|.|.+++.
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTV-TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEE-SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             EEEcCCCceEEecCCcEEEEEEc-cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            45566778899999999999998 554 778999999875321   00    1113332        2234799999999


Q ss_pred             CCCceEEEEEEcCCCCc----ccceeEEEEeecce--EEeCCCceeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCC
Q psy573           90 TDDGRYQCVVKNVAGTR----ESTDAVLRVLVKPY--IIRGPKDTTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPE  161 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~----~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~  161 (216)
                      +|+|.|+|.+.+..+..    ......|.|...|.  ....+ ...+.+|+.+.|.|.+.+.|++  .+.|++++..+..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            99999999999875531    12345677765542  22222 3567889999999999888765  8999999988764


Q ss_pred             CCeeee---------cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          162 DRMSVL---------PSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       162 ~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ......         ..+.|.|.....+|.|.|+|.+.|..+.
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            432111         1234677777777789999999998765

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.90  E-value=3.4e-23  Score=143.52  Aligned_cols=169  Identities=16%  Similarity=0.202  Sum_probs=114.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCE--Eec----------cccCceEEEe---cCcEEEEcccCCCCCce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGH--PID----------FENSKRLRLV---DGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~--~~~----------~~~~~~~~~~---~~~~l~i~~~~~~d~g~   94 (216)
                      |....+.+|+.++|.|.+..+.+ .+.+.||+++.  ...          .....++...   ...+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            66788999999999999523332 57999999531  110          1112344433   23479999999999999


Q ss_pred             EEEEEEcCCC-CcccceeEEEEe---ecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCC-Cee--
Q psy573           95 YQCVVKNVAG-TRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMPED-RMS--  165 (216)
Q Consensus        95 y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~~~--  165 (216)
                      |.|.+.+..+ ........|.|.   .+|.+...+.......|+.+.|.|.+.+. |.+ .+.|++++..+... ...  
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            9999998765 222334456665   34555543333333468899999999874 554 89999999877544 111  


Q ss_pred             e--ecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          166 V--LPS------RSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       166 ~--~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      .  ..+      +.|.|..+..+|+|.|+|.|.|........
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  208 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceE
Confidence            0  011      268899999999999999999987664433

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.90  E-value=4.1e-23  Score=151.04  Aligned_cols=175  Identities=15%  Similarity=0.200  Sum_probs=125.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...|. ..+.+|++++|.|.+ .+. .+.+.|++++..+....   .....+..|.|.+++.+|+|.|+|.+.+..
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~-~~~-~~~~~W~k~g~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~   97 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHY-RHR-FNNFMLYKEDRIHIPIF---HGRIFQESFNMSPVTTAHAGNYTCRGSHPH   97 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEB-TTB-CCSEEEEESSCSSSCHH---HHCCBSSCEEECSCCGGGCEEEEEEEBCSS
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEc-cCC-CceEEEEeCCCccceee---cCCcceEEEEECCCCcccCeEEEEEEEcCC
Confidence            566777776 578899999999998 444 67899999987653211   011235679999999999999999998633


Q ss_pred             C----CcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee-----ecCCe
Q psy573          104 G----TRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----LPSRS  171 (216)
Q Consensus       104 ~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-----~~~~~  171 (216)
                      +    ...+..+.|.|..   +|.+...+.. .+.+|+.+.|.|.+. .+.+.+.|++++..+.......     .....
T Consensus        98 ~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3vh8_G           98 SPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKAN  175 (316)
T ss_dssp             SSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEE
T ss_pred             CCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEE
Confidence            2    1224456666654   3455544444 488999999999995 4567899999988764321111     13457


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcc-----eEEEEEEEEEe
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGK-----ISASATLTVQS  206 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~-----~~~~~~l~v~~  206 (216)
                      |.|.++..+|+|.|+|.+.|..|.     .+..+.|.|..
T Consensus       176 L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred             EEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence            999999999999999999998774     24556666664

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.90  E-value=7.6e-26  Score=183.32  Aligned_cols=196  Identities=22%  Similarity=0.327  Sum_probs=0.0

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE------------------
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR------------------   75 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~------------------   75 (216)
                      ..+.|.|.. +|.+...+. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........                  
T Consensus       541 ~~~~l~V~~-~p~i~~~p~-~~~~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (772)
T 3v2a_R          541 RVISFHVTR-GPEITLQPD-MQPTEQESVSLWCTA-DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF  617 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEEEEEC-CceeeccCC-cccccCCceEEEEec-cCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceee
Confidence            345555554 355555543 457899999999998 67788899999988665321111110                  


Q ss_pred             -E--ecCcEEEEcccCCCCCceEEEEEEcCCCC-cccceeEEEE--eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcE
Q psy573           76 -L--VDGTNLAIQDSRKTDDGRYQCVVKNVAGT-RESTDAVLRV--LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT  149 (216)
Q Consensus        76 -~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v--~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  149 (216)
                       .  .....|.|.++..+|+|.|+|.+.|..+. .......+.|  ..+|.+...+....+.+|+.+.|.|.+.+.|.|.
T Consensus       618 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~  697 (772)
T 3v2a_R          618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ  697 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCe
Confidence             0  01124999999999999999999985433 2222333444  6678777777777888999999999999999999


Q ss_pred             EEEeeCCccCCCCC-eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          150 VHWKRLGSAMPEDR-MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       150 i~W~~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      +.|++++..+.... .... ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.++|....
T Consensus       698 v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~  762 (772)
T 3v2a_R          698 IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN  762 (772)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             EEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCccc
Confidence            99999998876542 2222 357899999999999999999999999999999999999887553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=3.1e-23  Score=147.08  Aligned_cols=180  Identities=19%  Similarity=0.221  Sum_probs=122.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceE-EEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRL-RLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...|. ..+.+|++++|.|.+ . .+.+.+.|||++..+..... ... ....+..|.|.+++.+|+|.|+|.+.+
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~-~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWS-D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEE-S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEec-C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            345555554 678999999999998 3 35678999998864421100 000 001235799999999999999999976


Q ss_pred             CCC----CcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-ee----ecC
Q psy573          102 VAG----TRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SV----LPS  169 (216)
Q Consensus       102 ~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~----~~~  169 (216)
                      ...    ...+..+.|.|..   +|.+...+. ..+.+|+++.|.|.+.+.+ +.+.|+|++..+..... ..    ...
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~  161 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQ  161 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCB
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCcee
Confidence            421    2234556777764   355555444 4678999999999997654 68999999987643211 11    124


Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEEeccee
Q psy573          170 RSLQLSDVRLEDGGEYVCEAENAVG-----KISASATLTVQSKYLK  210 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n~~~-----~~~~~~~l~v~~~p~~  210 (216)
                      ..|.|.+++  |+|.|+|.+.|...     ..+..+.|.|.+.|..
T Consensus       162 ~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~  205 (257)
T 1b6u_A          162 ADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSN  205 (257)
T ss_dssp             EEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--
T ss_pred             EEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCC
Confidence            679999998  99999999997532     2455678888877643

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.90  E-value=1.4e-22  Score=136.46  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=109.8

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEec------------cccCceEEE-ecCcEEEEcccCCCCCceEEE
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPID------------FENSKRLRL-VDGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~------------~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ..+.+.+|++++|.|.+....+.+.+.|++. +..+.            ....+++.+ ..+++|.|.+++.+|+|.|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4578999999999998732234679999994 32221            112256666 466789999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEec
Q psy573           98 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD  176 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~  176 (216)
                      .+.+..  .....+.|.|..++.     .......+..+.|.|.+ .+ |.|.+.|++++..+.     .....+|.+..
T Consensus        87 ~v~~~~--~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~~~~l~~~~  153 (180)
T 2dru_A           87 RMLHET--EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLRQKTMSYQW  153 (180)
T ss_dssp             EEESSS--EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EESSSEEEEEC
T ss_pred             EEEcCC--eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCCCCEEEEEE
Confidence            998765  334556777765321     11111234669999999 55 999999999998764     12344566533


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          177 VRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                        .+|+|.|+|.|.|..+.......
T Consensus       154 --~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          154 --TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             --SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             --hhcCccEEEEEecCcCcccccee
Confidence              78999999999999998766654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.90  E-value=2.3e-22  Score=141.31  Aligned_cols=165  Identities=18%  Similarity=0.343  Sum_probs=115.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec-------------cccCceEEEec----CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID-------------FENSKRLRLVD----GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~-------------~~~~~~~~~~~----~~~l~i~~~   87 (216)
                      +...|..+.+.+|+.++|.|..  +.+.+.+.||++  +....             .....++....    ..+|.|.++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             ceECccceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            4556777899999999999983  667889999995  21110             11123343332    347999999


Q ss_pred             CCCCCceEEEEEEcCCCC----cccceeEEEEeecc------------eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEE
Q psy573           88 RKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKP------------YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVH  151 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  151 (216)
                      +.+|+|.|.|.+.+..+.    .......|.|...+            .+...+....+.+|+.+.|.|.+.+.|.+.+.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~  160 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP  160 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence            999999999999986432    11233456665433            44555666789999999999999999989999


Q ss_pred             EeeCCcc--C-------------CCCCeeee-----cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          152 WKRLGSA--M-------------PEDRMSVL-----PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       152 W~~~~~~--~-------------~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      |++++..  +             ...++...     ....|.|.+++.+|+|.|+|.+.|..
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9996421  1             01222221     12479999999999999999999974

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.90  E-value=3.1e-22  Score=141.44  Aligned_cols=175  Identities=18%  Similarity=0.287  Sum_probs=119.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEe---------------ccccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPI---------------DFENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~---------------~~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .|....+.+|+.++|.|.+ .+.|  .+.+.||++.  ...               ......++....     ..+|.|.
T Consensus         8 ~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMN   86 (247)
T ss_dssp             EECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEEC
Confidence            3445789999999999998 5555  5789999842  111               011234444432     2479999


Q ss_pred             ccCCCCCceEEEEEEcCCCC-cccceeEEEEeec---------------ceEEeCCCceeEeCCCcEEEEEEeCCCCCcE
Q psy573           86 DSRKTDDGRYQCVVKNVAGT-RESTDAVLRVLVK---------------PYIIRGPKDTTVSAGSIIVFECSVGGDAVLT  149 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  149 (216)
                      +++.+|+|.|.|.+.+..+. .......|.|...               +.+...+....+.+|+.+.|.|.+.+.+.+.
T Consensus        87 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  166 (247)
T 2ghw_B           87 SLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSN  166 (247)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC
T ss_pred             cCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccce
Confidence            99999999999999986221 1123346666643               2344445566788999999999999998889


Q ss_pred             EEEee--CCccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573          150 VHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ  205 (216)
Q Consensus       150 i~W~~--~~~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~  205 (216)
                      +.|++  ++..+.             ..++...   ...+|.|.+++.+|+|.|+|.+.|.... ......|.|.
T Consensus       167 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          167 LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            99999  444331             1222222   1236999999999999999999986433 2334455555

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=9e-23  Score=158.82  Aligned_cols=193  Identities=15%  Similarity=0.196  Sum_probs=132.8

Q ss_pred             hhceeeEEe---eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCce-EEEecC------cE
Q psy573           14 EKKKLKIEM---LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKR-LRLVDG------TN   81 (216)
Q Consensus        14 ~~~~l~v~~---~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~-~~~~~~------~~   81 (216)
                      ..+.|.|..   .+|.+.+.+....+.+|+.+.|.|.+ .+.+.  +.+.|++++..+....... .....+      ..
T Consensus       101 ~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~  179 (523)
T 2rcj_C          101 TGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLI-SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY  179 (523)
T ss_pred             CceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEe-ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEE
Confidence            446677642   35667777777777899999999998 55543  3999999998763221100 001111      36


Q ss_pred             EEEcccCCCCCceEEEEEEcCCCCcccceeEEE----EeecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeC
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR----VLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRL  155 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~  155 (216)
                      |.|.++..+|+|.|+|.+.+..+... ..+.+.    +..+|.+........+.+|+.+.|.|.+.+. |.+ .+.|+++
T Consensus       180 L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~  258 (523)
T 2rcj_C          180 LSLTPEQWKSHRSYSCQVTHEGSTVE-KTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSG  258 (523)
T ss_pred             EEEechhcCCCceEEEEEEecCcccc-cceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecC
Confidence            99999999999999999998766532 223321    2345555544444456789999999999886 767 8999999


Q ss_pred             CccCCCC---Cee-----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          156 GSAMPED---RMS-----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       156 ~~~~~~~---~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      +..+...   ...     ....+.|.|.++..+| |.|+|.|.|..|.......|.+...|.
T Consensus       259 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~  319 (523)
T 2rcj_C          259 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPS  319 (523)
T ss_pred             CcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCce
Confidence            8764321   111     1112479999999999 999999999999877666666554443

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=1.8e-23  Score=159.90  Aligned_cols=172  Identities=18%  Similarity=0.258  Sum_probs=120.0

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|...++ ..+.+....+.+|+.++|.|.+ .  |.+.+.|  +|..+...       .....|.|.++..+|+|
T Consensus       274 ~~~~l~V~~~~~-p~i~~~~~~v~~G~~v~l~C~~-~--p~p~i~W--~g~~~~~~-------~~~~~L~i~~~~~~d~G  340 (450)
T 1z7z_I          274 TLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPL-------GPRAQLLLKATPEDNGR  340 (450)
T ss_dssp             EEEEEEEECCCC-CEEEESCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTC
T ss_pred             EEEEEEEecCCC-CeEecCCeeEeCCCcEEEEEec-C--CCCEeEE--CCEEcCCC-------CceEEEEEecCcccCCc
Confidence            356666666433 3334445689999999999998 3  8889999  66655111       12347999999999999


Q ss_pred             eEEEEEEcCCC-Cc--ccceeEEEEeecceEEeCC--CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec
Q psy573           94 RYQCVVKNVAG-TR--ESTDAVLRVLVKPYIIRGP--KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP  168 (216)
Q Consensus        94 ~y~C~~~~~~~-~~--~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  168 (216)
                      .|+|.+.|..+ ..  ....+.|.|..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++..+..      .
T Consensus       341 ~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~------~  414 (450)
T 1z7z_I          341 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------I  414 (450)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC------T
T ss_pred             eEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCC------C
Confidence            99999986544 22  1356778888888776554  456888999999999999999999999999873221      1


Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      +..+   .+..+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       415 g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          415 GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            2222   57889999999999999999999999998753

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=3.5e-22  Score=152.76  Aligned_cols=189  Identities=16%  Similarity=0.182  Sum_probs=135.6

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCC---eeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~---~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      .+..+.|.|...|..+...+.+..+.+|+.+.|.|.+ .+.+.+   .+.||+++..+......  ....++.|.|.++.
T Consensus        74 ~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~~~--~~~~~~~L~i~~~~  150 (450)
T 1z7z_I           74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRR  150 (450)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEECC--TTTEEEEEEEECCS
T ss_pred             ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeeccccc--ccccceEEEEEeec
Confidence            3456778877755555567777889999999999998 666666   89999999987432210  01112479999999


Q ss_pred             CCCCceEEEEEEcCCCCcc-------cceeEEEEeec----ceEEeCCCceeEeCCCcEEEEEEeCCC-C--CcEEEEee
Q psy573           89 KTDDGRYQCVVKNVAGTRE-------STDAVLRVLVK----PYIIRGPKDTTVSAGSIIVFECSVGGD-A--VLTVHWKR  154 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~-------~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~~~i~W~~  154 (216)
                      .+|+|.|+|.+.|..+...       +....+.+...    |.+..   ...+.+|+.+.|.|.+.+. |  .+.+.|++
T Consensus       151 ~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~  227 (450)
T 1z7z_I          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (450)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEE
T ss_pred             cccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeC
Confidence            9999999999998765321       12233334322    22221   1578899999999999888 6  78999999


Q ss_pred             CCccCCCCCeeeecCCeEEEe---cCCCCCCe--EEEEEEEcCCcceEEEEEEEEEecc
Q psy573          155 LGSAMPEDRMSVLPSRSLQLS---DVRLEDGG--EYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g--~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ++..+.. +.....+ .+.+.   ++..+|.|  .|+|.+.|..|.......|.|...|
T Consensus       228 ~~~~~~~-~~~~~~~-~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~  284 (450)
T 1z7z_I          228 GDQRLNP-TVTYGND-SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP  284 (450)
T ss_dssp             TTEECCC-EEEEETT-EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CCEeCCc-eEEecCC-ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC
Confidence            9988765 2222222 22222   67899999  9999999999998888888888743

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=147.88  Aligned_cols=165  Identities=15%  Similarity=0.190  Sum_probs=122.0

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-C--cEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-G--TNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      +..+.+.+|+.+.|.|....+.|.+.+.|++++..+...  .++.... +  ..|.|.+++.+|+|.|+|.+.+..+...
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~   85 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDS--PRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS   85 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTC--TTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCC--CCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE
Confidence            335678899999999988556788999999999988533  2333322 2  4899999999999999999998776432


Q ss_pred             cceeEEEEee------------cceEEeCCC-ceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCC-Ceeeec---C
Q psy573          108 STDAVLRVLV------------KPYIIRGPK-DTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPED-RMSVLP---S  169 (216)
Q Consensus       108 ~~~~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~-~~~~~~---~  169 (216)
                        ...+.+..            +|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+... +.....   .
T Consensus        86 --s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~  163 (312)
T 2y23_A           86 --SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT  163 (312)
T ss_dssp             --EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTT
T ss_pred             --EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCC
Confidence              34455432            444333222 56788999999999998 8899999999999887653 222221   1


Q ss_pred             --CeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          170 --RSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       170 --~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                        ..|.|.++..+|+|.|+|.+.|........
T Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  195 (312)
T 2y23_A          164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHST  195 (312)
T ss_dssp             TEEEEEESCCCGGGCEEEEEEEESSSCEEEEE
T ss_pred             CEEEEEEccCCcccCEeEEEEEEeCCceEEEE
Confidence              239999999999999999998755444333

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.90  E-value=8.1e-23  Score=142.74  Aligned_cols=178  Identities=15%  Similarity=0.211  Sum_probs=116.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec----c-----------ccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID----F-----------ENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~----~-----------~~~~~~~~~~-----~~~l~i~   85 (216)
                      .|....+.+|++++|.|.+ .+.+  .+.+.||++.  ....    .           ...+++.+..     +.+|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            4556789999999999998 4444  5789999853  2110    0           1134555432     3589999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAM  159 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  159 (216)
                      +++.+|+|.|.|.+.+...........|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            99999999999999875322222345677764    3444433223346689999999999875 666 99999998764


Q ss_pred             CC---CCe----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          160 PE---DRM----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       160 ~~---~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      ..   ...    .....+.|.|.....+| |.|+|.|.|..+.......+.+.++|.
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~  220 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  220 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence            21   111    11123468888888878 999999999887776666666666553

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.90  E-value=1.1e-22  Score=146.81  Aligned_cols=171  Identities=22%  Similarity=0.273  Sum_probs=127.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE-EecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.++|.|.+ .+    .+.|++++....     ... ...+..|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~-~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   73 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVS-NG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELED   73 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEEC-SS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred             CcEecCCCceEEECCCCCEEEEEEe-CC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence            3455556677889999999999998 43    499998754321     111 123468999999999999999999877


Q ss_pred             CCCcccceeEEEEeecce-EEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEee-CCccCCC-CCeeeecCCeEEEecCC
Q psy573          103 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKR-LGSAMPE-DRMSVLPSRSLQLSDVR  178 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~-~~~~~~~-~~~~~~~~~~l~i~~~~  178 (216)
                      .+.. ...+.|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.. .+......+.|.|.++.
T Consensus        74 ~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~  152 (289)
T 3ejj_X           74 PMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAK  152 (289)
T ss_dssp             -----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCC
T ss_pred             CCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecc
Confidence            6653 5567888877664 45666777899999999999998877665 99986 4544433 34455567789999999


Q ss_pred             CCCCeEEEEEEE-cCCcceEEEEEEEEE
Q psy573          179 LEDGGEYVCEAE-NAVGKISASATLTVQ  205 (216)
Q Consensus       179 ~~d~g~y~C~~~-n~~~~~~~~~~l~v~  205 (216)
                      .+|.|.|+|.+. +..+..+..+.|.|.
T Consensus       153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          153 VLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cccCEEEEEEEEeCCCccccccEEEEEE
Confidence            999999999999 555566777888887

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.90  E-value=3.3e-23  Score=146.91  Aligned_cols=171  Identities=19%  Similarity=0.198  Sum_probs=118.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC-----CCeeEEeeCCE--E---e-------ccccCceEEEec---CcEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNGH--P---I-------DFENSKRLRLVD---GTNLAI   84 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-----~~~~~W~~~~~--~---~-------~~~~~~~~~~~~---~~~l~i   84 (216)
                      +.+...|..+.+.+|++++|.|.+ .+.+     .+.+.||+++.  .   +       ......++....   +.+|.|
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            345556778899999999999998 5555     58999999541  1   1       011123444332   237999


Q ss_pred             cccCCCCCceEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAM  159 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  159 (216)
                      .+++.+|+|.|.|.+.+..+........|.|..   +|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            999999999999999886543323344666653   4555543433334468899999999874 443 79999999876


Q ss_pred             CCC-Cee----eecC------CeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          160 PED-RMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       160 ~~~-~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ... ...    ...+      ..|.|..+..+|+|.|+|.|.|.....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            543 111    0111      348899999999999999999987654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.90  E-value=5.8e-23  Score=145.26  Aligned_cols=173  Identities=15%  Similarity=0.182  Sum_probs=111.8

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCC-----eeEEeeCCEEec------cccCceEEEe-------------cCcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEP-----TLVWKKNGHPID------FENSKRLRLV-------------DGTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~-----~~~W~~~~~~~~------~~~~~~~~~~-------------~~~~l~i~   85 (216)
                      .|..+.+.+|++++|.|.+ .+.|.+     .+.|++++....      ..........             .+.+|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             TTSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             CCCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            3445688999999999998 455544     499999632110      0000000000             12359999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCCccCCCCC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLGSAMPEDR  163 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~  163 (216)
                      +++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+. .....|..+.|.|.+.+ .|.+ .+.|++++..+....
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~  165 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI  165 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCE
T ss_pred             CCCHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcc
Confidence            999999999999999876543 4567888888887766544 33456777889999988 7888 999999987543210


Q ss_pred             ----------ee------eecCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy573          164 ----------MS------VLPSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQ  205 (216)
Q Consensus       164 ----------~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~  205 (216)
                                ..      ......|.+.....+|.|.|+|.+.|..+.  .+..+.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             EECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             ccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence                      01      111235777888888999999999999886  5556666663

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.90  E-value=1.3e-22  Score=148.33  Aligned_cols=189  Identities=19%  Similarity=0.222  Sum_probs=121.8

Q ss_pred             hhhceeeEEee--ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecCcEEEEcccC
Q psy573           13 EEKKKLKIEML--REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDGTNLAIQDSR   88 (216)
Q Consensus        13 ~~~~~l~v~~~--~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~   88 (216)
                      +..+.|.|...  +|.+...+... +.+|+.++|.|.+  ..+.+.+.|++++..+..........  ..+..|.|.+++
T Consensus       106 s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~--~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~  182 (316)
T 3vh8_G          106 SNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWS--DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMM  182 (316)
T ss_dssp             CCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEE--SSCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCC
T ss_pred             CCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcC--CCCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCC
Confidence            45566666553  34555555544 8899999999998  34567899999987663211111111  123579999999


Q ss_pred             CCCCceEEEEEEcCCCCc----ccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC
Q psy573           89 KTDDGRYQCVVKNVAGTR----ESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE  161 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~  161 (216)
                      .+|+|.|+|.+.|..+..    .+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+. .+.+.+.|++++..+..
T Consensus       183 ~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~  260 (316)
T 3vh8_G          183 LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHER  260 (316)
T ss_dssp             GGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCE
T ss_pred             hhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCC
Confidence            999999999999876631    14445666653   445544433 3678899999999997 47789999999987653


Q ss_pred             CCeee--ec---CCeEEEecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEEecc
Q psy573          162 DRMSV--LP---SRSLQLSDVRLEDGGEYVCEAENAVG-----KISASATLTVQSKY  208 (216)
Q Consensus       162 ~~~~~--~~---~~~l~i~~~~~~d~g~y~C~~~n~~~-----~~~~~~~l~v~~~p  208 (216)
                      .....  ..   ...|.|.++.  |+|.|+|.+.|..+     ..+..+.|.|.++|
T Consensus       261 ~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          261 RLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             ceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            21111  11   1578999998  99999999999765     35667777777765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.90  E-value=6.5e-23  Score=142.41  Aligned_cols=171  Identities=16%  Similarity=0.229  Sum_probs=115.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEec---------------cccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~~---------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .|....+.+|+.++|.|.+ .+.+  .+.+.||++  +..+.               .....++.+..     ..+|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             CCCCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            4556789999999999998 4443  679999996  33221               01234554432     3589999


Q ss_pred             ccCCCCCceEEEEEEcCCCC---cccceeEEEEeec----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCC
Q psy573           86 DSRKTDDGRYQCVVKNVAGT---RESTDAVLRVLVK----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLG  156 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~  156 (216)
                      +++.+|+|.|.|.+.+..+.   .......|.|...    |.+...+....+..|+.+.|.|.+.+ .|.| .+.|++++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            99999999999999986531   1223456676653    55544333335678999999999988 7888 99999998


Q ss_pred             ccCCC---CCee----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          157 SAMPE---DRMS----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       157 ~~~~~---~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..+..   ....    ....+.|.|..... |.|.|+|.|.|..+.......|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            76421   1100    01123578854444 5699999999998876555443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.90  E-value=4.6e-23  Score=153.53  Aligned_cols=161  Identities=17%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec------------cccCceEEEe------cCcEEEEcccCCCCCce
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------------FENSKRLRLV------DGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------------~~~~~~~~~~------~~~~l~i~~~~~~d~g~   94 (216)
                      .+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+.            .....++...      .+..|.|.+++.+|+|.
T Consensus         3 ~v~~~~G~~v~L~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            3 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEETTSCEEECCCC-TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             eEEEeCCCeEEEEEEe-cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            3578899999999998 678889999999975321            1122334332      24579999999999999


Q ss_pred             EEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEE
Q psy573           95 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL  174 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i  174 (216)
                      |+|.+.+..     ..+.|.|..   +...+. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+      ......|.|
T Consensus        82 Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i  146 (363)
T 1wio_A           82 YICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV  146 (363)
T ss_dssp             EEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEE
T ss_pred             EEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEE
Confidence            999998753     245566654   223332 46789999999999988999999999987543      235678999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      .++..+|+|.|+|.+.|..+.....+.|.|...|.
T Consensus       147 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~  181 (363)
T 1wio_A          147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  181 (363)
T ss_dssp             CSBCGGGCEECEEEEEETTEEEEECCEECEECCSC
T ss_pred             eeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC
Confidence            99999999999999999887777777787776554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.90  E-value=4.3e-23  Score=146.73  Aligned_cols=178  Identities=20%  Similarity=0.295  Sum_probs=119.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CE---Eec-----------cccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PID-----------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~---~~~-----------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .|....+.+|+.++|.|.+ .+.+  .+.+.||++  +.   .+.           .....++....     ..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (257)
T ss_dssp             EECCSEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred             CCCCccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            3445678999999999998 5543  679999985  21   110           01234554432     24799999


Q ss_pred             cCCCCCceEEEEEEcCCC-------C-cccceeEEEEeecc---------------eEEeCCCceeEeCCCcEEEEEEeC
Q psy573           87 SRKTDDGRYQCVVKNVAG-------T-RESTDAVLRVLVKP---------------YIIRGPKDTTVSAGSIIVFECSVG  143 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~  143 (216)
                      ++.+|+|.|.|.+.+..+       . .......|.|...+               .+...+....+.+|+.+.|.|.+.
T Consensus        85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  164 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGS  164 (257)
T ss_dssp             CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECS
T ss_pred             CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEEC
Confidence            999999999999998743       1 11234567776542               122334455788999999999999


Q ss_pred             CCCCcEEEEee--CCccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          144 GDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       144 ~~p~~~i~W~~--~~~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      +.+.+.+.|++  ++..+.             ..++...   ....|.|.+++.+|+|.|.|.+.|..........|.|.
T Consensus       165 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~  244 (257)
T 1f3r_B          165 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK  244 (257)
T ss_dssp             SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred             CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence            88888999999  444331             1222221   22469999999999999999999975223334455565


Q ss_pred             ecc
Q psy573          206 SKY  208 (216)
Q Consensus       206 ~~p  208 (216)
                      ..+
T Consensus       245 ~~~  247 (257)
T 1f3r_B          245 AAE  247 (257)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.90  E-value=8.3e-23  Score=141.90  Aligned_cols=174  Identities=21%  Similarity=0.307  Sum_probs=117.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCC---eeEEeeCCEEecc--------------ccCceEEE----------ecCcEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDF--------------ENSKRLRL----------VDGTNLA   83 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~---~~~W~~~~~~~~~--------------~~~~~~~~----------~~~~~l~   83 (216)
                      |..+.+..|++++|.|.+ .+.+.+   .+.|+|++..+..              ....+...          ..+++|.
T Consensus         8 p~~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CSEEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             CCEEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            345678999999999998 554444   4899997643311              01111111          1235799


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED  162 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~  162 (216)
                      |.+++.+|+|.|.|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|.+.+.|.+++......
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            99999999999999998876655444555666666665555555566667777777765 56788899999887644221


Q ss_pred             Ceee-e------cCCeEEEecCCCCCCeEEEEEEEcCCcceEE--EEEEEEE
Q psy573          163 RMSV-L------PSRSLQLSDVRLEDGGEYVCEAENAVGKISA--SATLTVQ  205 (216)
Q Consensus       163 ~~~~-~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~--~~~l~v~  205 (216)
                      .... .      ..+.|.|.++..+|+|.|+|.|.|..+....  ++.|.|.
T Consensus       167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            1111 1      1245999999999999999999999887544  4444444

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.90  E-value=1.1e-22  Score=141.30  Aligned_cols=170  Identities=16%  Similarity=0.257  Sum_probs=116.6

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EE---e-cc-------------ccCceEEEec-----CcEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I-DF-------------ENSKRLRLVD-----GTNLA   83 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~---~-~~-------------~~~~~~~~~~-----~~~l~   83 (216)
                      .|....+.+|+.++|.|.+ .+.+  .+.+.||+++  ..   + ..             ...+++....     ..+|.
T Consensus         6 ~p~~~~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVA-SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ   84 (220)
T ss_dssp             EECCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEE-cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence            3556789999999999998 4444  6799999853  11   1 00             0124555432     23899


Q ss_pred             EcccCCCCCceEEEEEEcCCCCc--ccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTR--ESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRL  155 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~  155 (216)
                      |.+++.+|+|.|.|.+.+..+..  ......|.|.    .+|.+...+....+.+|+.+.|.|.+.+. |.| .+.|+++
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            99999999999999999865321  1234566665    34555443333456789999999999887 888 9999998


Q ss_pred             CccCC---CCC----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          156 GSAMP---EDR----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       156 ~~~~~---~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      +....   ...    ......+.|.|.....++ |.|+|.|.|..|...+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            86311   111    111123568888888766 9999999999998766654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=4.4e-22  Score=154.96  Aligned_cols=173  Identities=18%  Similarity=0.238  Sum_probs=126.0

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEec----------cccCceEEEec---CcEEEEcccCCCCCc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID----------FENSKRLRLVD---GTNLAIQDSRKTDDG   93 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~~----------~~~~~~~~~~~---~~~l~i~~~~~~d~g   93 (216)
                      ..|..+.+.+|+.+.|.|.+ .+.+.+.+.||+++  ..+.          .....++....   ...|.|.+++.+|+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDES   83 (523)
T ss_pred             ccCCceEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCE
Confidence            45677899999999999998 67788899999974  2111          01123444322   247999999999999


Q ss_pred             eEEEEEEcCCCCc--ccceeEEEE----eecceEEeCCCceeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCee
Q psy573           94 RYQCVVKNVAGTR--ESTDAVLRV----LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMS  165 (216)
Q Consensus        94 ~y~C~~~~~~~~~--~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~  165 (216)
                      .|+|.+.+..+..  ......|.|    ..+|.+...+....+.+|+.+.|.|.+.+.|++  .+.|++++..+......
T Consensus        84 ~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  163 (523)
T 2rcj_C           84 DYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVET  163 (523)
T ss_pred             EEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEe
Confidence            9999999876421  223456777    345666666666667789999999999888654  89999999877543211


Q ss_pred             e----ec------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          166 V----LP------SRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       166 ~----~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      .    ..      .+.|.|.++..+|+|.|+|.+.|..+.....+.+
T Consensus       164 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  210 (523)
T 2rcj_C          164 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP  210 (523)
T ss_pred             ccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceee
Confidence            1    01      1359999999999999999999998876555544

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.90  E-value=1e-22  Score=141.67  Aligned_cols=170  Identities=14%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EE---ec--------------cccCceEEEec-----CcEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID--------------FENSKRLRLVD-----GTNLAI   84 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~---~~--------------~~~~~~~~~~~-----~~~l~i   84 (216)
                      |....+.+|+.++|.|.+ .+.+  .+.+.||++.  ..   +.              ....+++.+..     +.+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             ECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             CCceeEcCCCEEEEEEEe-cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            445678999999999998 4433  6789999853  11   10              01124555442     248999


Q ss_pred             cccCCCCCceEEEEEEcCCCC----cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEee
Q psy573           85 QDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKR  154 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~  154 (216)
                      .+++.+|+|.|.|.+.+..+.    .......|.|..    +|.+...+....+..|+.+.|.|.+.+. |.| .+.|++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            999999999999999876531    122345666653    4555443333345689999999999875 877 999999


Q ss_pred             CCccCCCCCe-------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          155 LGSAMPEDRM-------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       155 ~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ++..+.....       .....+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            9876532111       11112468889999889 99999999999886655443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=3.7e-22  Score=140.44  Aligned_cols=165  Identities=18%  Similarity=0.276  Sum_probs=116.0

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCC----CCeeEEeeCC--EE---ec-------cccCceEEEec---CcEEEEcc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG--HP---ID-------FENSKRLRLVD---GTNLAIQD   86 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~----~~~~~W~~~~--~~---~~-------~~~~~~~~~~~---~~~l~i~~   86 (216)
                      .+...|....+.+|+.++|.|.+ .+.+    .+.+.||++.  ..   +.       .....++....   ..+|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP   81 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             ceEeeCCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence            34556777889999999999998 6666    6789999952  21   10       01123443332   23799999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEeecc------eEEeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--  156 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--  156 (216)
                      ++.+|+|.|.|.+.+..+........|.|..++      .....+....+.+|+.+.|.|.+.+.|  .+.+.|+++.  
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g  161 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPE  161 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCC
Confidence            999999999999998765433445677776542      233445667888999999999998876  3589999963  


Q ss_pred             ccCC------------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEc
Q psy573          157 SAMP------------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       157 ~~~~------------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ..+.                  ..+.....     ..+|.|.+++.+|+|.|+|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            2210                  11222221     14699999999999999999984

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.89  E-value=5.3e-22  Score=139.89  Aligned_cols=167  Identities=19%  Similarity=0.214  Sum_probs=114.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc-------ccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF-------ENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~-------~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.+ .+.+.+.+.||++.  .   .+..       ....++...   ...+|.|.+++.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            45566778899999999999998 67778899999853  1   1100       112344433   1247999999999


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEeecce-------------EEeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeC
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPY-------------IIRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRL  155 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~  155 (216)
                      |+|.|.|.+.+..+........|.|..++.             ....+....+.+|+++.|.|.+.+.+  .+.+.|+++
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            999999999986543223345677766542             22223345688999999999998775  478999985


Q ss_pred             C--ccCC-----------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          156 G--SAMP-----------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       156 ~--~~~~-----------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .  ..+.                 ..+.....     ..+|.|.+++.+|+|.|.|.+.|..
T Consensus       162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  223 (242)
T 2znx_A          162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGD  223 (242)
T ss_dssp             CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSS
T ss_pred             CCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCc
Confidence            3  2110                 12222221     1379999999999999999998853

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.89  E-value=5.9e-22  Score=132.31  Aligned_cols=150  Identities=15%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc----------cCceEEEe-cCcEEEEcccCCCCCceEEEEEEc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE----------NSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .+.+.+|++++|.|.+ . .|.+.+.|++++..+...          ..++..+. .+++|.|.+++.+|+|.|.|.+.+
T Consensus         4 ~v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            4678899999999987 3 478899999988754211          22344443 567899999999999999999987


Q ss_pred             CCCCcccceeEEEEeecc---eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCC
Q psy573          102 VAGTRESTDAVLRVLVKP---YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR  178 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~  178 (216)
                      ..+   ...+.|.|..++   .+....       . ...|.|.+.+.|.|.+.|++++..+...     ....+.+.  .
T Consensus        82 ~~~---~~~~~L~V~~~~~~p~i~~~~-------~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~l~~~--~  143 (171)
T 1ccz_A           82 ITD---TMKFFLYVLEMVSKPMIYWEC-------S-NATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ--W  143 (171)
T ss_dssp             CCS---CEEEEEEEECCCCCCEEEEET-------T-TTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSEEEEE--C
T ss_pred             CCC---cEEEEEEEECcCCCCEEEEec-------C-CcEEEEEeCCCCCcEEEEEECCEECcCC-----cceEEEEe--c
Confidence            665   445677776542   222111       1 1379999998899999999998765421     22334443  3


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEE
Q psy573          179 LEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      .+|.|.|+|.|.|..+..+..+.|
T Consensus       144 ~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          144 TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cCCCceEEEEEEcccCcccceeEE
Confidence            678999999999999987776654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=9.5e-22  Score=141.64  Aligned_cols=178  Identities=19%  Similarity=0.333  Sum_probs=121.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec---------------cccCceEEEec-----CcEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNL   82 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l   82 (216)
                      +...|....+.+|++++|.|.+ .+.+  .+.+.||+++  ....               .....++....     ..+|
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL  107 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYL  107 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence            3456778899999999999997 5543  5789999953  1110               01134444432     2479


Q ss_pred             EEcccCCCCCceEEEEEEcCCCC----cccceeEEEEeecc---------------eEEeCCCceeEeCCCcEEEEEEeC
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKP---------------YIIRGPKDTTVSAGSIIVFECSVG  143 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~  143 (216)
                      .|.+++.+|+|.|.|.+.+..+.    .......|.|...|               .+...+....+.+|+++.|.|.+.
T Consensus       108 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  187 (282)
T 1qok_A          108 QLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSAS  187 (282)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEES
T ss_pred             EECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEec
Confidence            99999999999999999987541    11233467776543               344445566789999999999999


Q ss_pred             CCCCcEEEEee--CCccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEE
Q psy573          144 GDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTV  204 (216)
Q Consensus       144 ~~p~~~i~W~~--~~~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v  204 (216)
                      +.+ +.+.|+|  ++..+.             ..++...   ....|.|.+++.+|+|.|.|.+.|.... ......|.|
T Consensus       188 ~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  266 (282)
T 1qok_A          188 SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL  266 (282)
T ss_dssp             SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence            888 8999999  444331             1222221   2246999999999999999999875432 333455666


Q ss_pred             Ee
Q psy573          205 QS  206 (216)
Q Consensus       205 ~~  206 (216)
                      ..
T Consensus       267 ~~  268 (282)
T 1qok_A          267 KR  268 (282)
T ss_dssp             C-
T ss_pred             ec
Confidence            54

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.89  E-value=3.6e-22  Score=141.88  Aligned_cols=170  Identities=19%  Similarity=0.282  Sum_probs=118.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCC--CCCCeeEEeeCC--E---Ee------------ccccCceEEEe--c---C
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI------------DFENSKRLRLV--D---G   79 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~--~---~   79 (216)
                      ++.+...+..+.+.+|++++|.|.+ .+  .+.+.+.||+..  .   .+            ......++...  .   .
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQA-SGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEe-ecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            4566677788899999999999998 44  256789999742  1   11            01112345444  1   1


Q ss_pred             cEEEEcccCCCCCceEEEEEEcC-----------CCCcccceeEEEEee---------------cceEEeCCCceeEeCC
Q psy573           80 TNLAIQDSRKTDDGRYQCVVKNV-----------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSAG  133 (216)
Q Consensus        80 ~~l~i~~~~~~d~g~y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g  133 (216)
                      .+|.|.+++.+|+|.|.|.+.+.           ..........|.|..               ++.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            36999999999999999999886           122223345677765               3445666777789999


Q ss_pred             CcEEEEEEeCCCCC-cEEEEeeC--CccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          134 SIIVFECSVGGDAV-LTVHWKRL--GSAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       134 ~~~~l~C~~~~~p~-~~i~W~~~--~~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +++.|.|.+.+.+. +.+.|++.  +..+.             ..+....   ....|.|.+++.+|+|.|.|.+.|...
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999988776 89999984  22211             1222221   123599999999999999999988544

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.89  E-value=9.6e-23  Score=158.43  Aligned_cols=168  Identities=15%  Similarity=0.158  Sum_probs=118.8

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL  113 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l  113 (216)
                      .....|+.+.|.|.+ .+.|.|.+.|++++........   ............+...|+|.|+|.+.|..|......+.|
T Consensus       149 ~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l  224 (527)
T 3qs9_E          149 YFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKE---ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI  224 (527)
T ss_dssp             EEEECSSSSCEEEEE-EESSCCEEEEEEC----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEE
T ss_pred             cEEecCCceEEEEEE-ceecCCeEEEEECCCCCccccc---cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEE
Confidence            344678889999998 8899999999998765521100   000111122334558899999999999888765545677


Q ss_pred             EEeecceEEeCCCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCee----------eecCCeEEEecCCCCCC
Q psy573          114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMS----------VLPSRSLQLSDVRLEDG  182 (216)
Q Consensus       114 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~  182 (216)
                      .|...|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......          .....+|.|.++..+|+
T Consensus       225 ~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds  302 (527)
T 3qs9_E          225 DLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT  302 (527)
T ss_dssp             ESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGC
T ss_pred             EEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccC
Confidence            77776654  55677889999999999996 8999999999999876543211          11234699999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          183 GEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      |.|+|.+.|.   ...++.|.|..+|.+
T Consensus       303 G~Y~C~a~N~---~~~~~~L~V~~~p~i  327 (527)
T 3qs9_E          303 GYYTCSSSKH---PSQSALVTIVEKGFI  327 (527)
T ss_dssp             EEEEEEETTE---EEEEEEEEEC--CEE
T ss_pred             eEEEEEEEeC---CCceEEEEEEccCcc
Confidence            9999999998   677778888776654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=141.99  Aligned_cols=184  Identities=15%  Similarity=0.245  Sum_probs=113.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC---CE--Eecccc------------C-ceEEE----ecCcEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN---GH--PIDFEN------------S-KRLRL----VDGTNL   82 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~---~~--~~~~~~------------~-~~~~~----~~~~~l   82 (216)
                      +.+...|..+.+.+|++++|.|.+ .+.+.+.+.||+.   ..  .+....            . .+...    ....+|
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             --------CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             cccccCCceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            556667778899999999999998 6667789999982   11  110000            0 11111    123479


Q ss_pred             EEcccCCCCCceEEEEEEcCCCC--cccceeEEEEee-----------------cceEEeCCCceeEeCCCcEEEEEEeC
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV-----------------KPYIIRGPKDTTVSAGSIIVFECSVG  143 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~-----------------~p~~~~~~~~~~~~~g~~~~l~C~~~  143 (216)
                      .|.+++.+|+|.|.|.+.+..+.  .......|.|..                 .+.+...+....+.+|+++.|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            99999999999999999986542  223345666665                 34566667778899999999999987


Q ss_pred             CC-CCcEEEEeeCCccCC---------------CCCeeee-----cCCeEEEecCCCCCCeEEEEEEEcCCc-----ceE
Q psy573          144 GD-AVLTVHWKRLGSAMP---------------EDRMSVL-----PSRSLQLSDVRLEDGGEYVCEAENAVG-----KIS  197 (216)
Q Consensus       144 ~~-p~~~i~W~~~~~~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~-----~~~  197 (216)
                      +. +.+.+.|++......               ..++...     ....|.|.+++.+|+|.|.|.+.+...     ...
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg  241 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFG  241 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEEC
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEEC
Confidence            64 788999998542110               1122222     124599999999999999999975321     122


Q ss_pred             EEEEEEEEecce
Q psy573          198 ASATLTVQSKYL  209 (216)
Q Consensus       198 ~~~~l~v~~~p~  209 (216)
                      .-..|.|...+.
T Consensus       242 ~GT~l~v~~~~~  253 (259)
T 3omz_A          242 KGTRVTVEPRSQ  253 (259)
T ss_dssp             CCEEEEEEC---
T ss_pred             CCCEEEEeeCcc
Confidence            334566665443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=6e-24  Score=146.87  Aligned_cols=167  Identities=19%  Similarity=0.280  Sum_probs=116.2

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEec----------cccCceEEEe---cCcEEEEcccCCCCCceE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID----------FENSKRLRLV---DGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~~----------~~~~~~~~~~---~~~~l~i~~~~~~d~g~y   95 (216)
                      |....+.+|+.++|.|.+ .+.+.+.+.||++.  ..+.          .....++...   ....|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            677889999999999997 66667789999852  2221          0112344333   224799999999999999


Q ss_pred             EEEEEcCCCC--cccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCCCee--
Q psy573           96 QCVVKNVAGT--RESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRMS--  165 (216)
Q Consensus        96 ~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~--  165 (216)
                      .|.+.+....  .......+.|.    .+|.+...+....+..|+.+.|.|.+.+. |. +.+.|++++..+......  
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC
Confidence            9999963221  11233456663    45666654544455679999999999876 44 799999999776533110  


Q ss_pred             -------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          166 -------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       166 -------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                             ....+.|.|.++..+|+|.|+|.|.|..+...+
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence                   111245889999999999999999998876433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.89  E-value=2.3e-22  Score=146.87  Aligned_cols=184  Identities=23%  Similarity=0.327  Sum_probs=128.4

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCC-----eeEEeeCCEEec-----------cccCceEEEe--------cCcEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEP-----TLVWKKNGHPID-----------FENSKRLRLV--------DGTNLA   83 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~-----~~~W~~~~~~~~-----------~~~~~~~~~~--------~~~~l~   83 (216)
                      ...|..+.+..|++++|.|.+ .+.+.+     ++.|+|++....           .....+....        .+.+|.
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v-~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYL-QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEE-ECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EcCCCEEEEecCCCEEEEEEE-ECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            345667788999999999987 443333     589999875321           1112222221        235699


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED  162 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~  162 (216)
                      |.+++.+|+|.|+|.+.+.........+.|.+...|..........+..++.+.+.|.+ .+.|.+.+.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~  162 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT  162 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence            99999999999999987554444455667777778877666666667778889999987 46789999999998765422


Q ss_pred             Ceee-ec------CCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecceeee
Q psy573          163 RMSV-LP------SRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQSKYLKVI  212 (216)
Q Consensus       163 ~~~~-~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~~~p~~~~  212 (216)
                      .... ..      .+.|.|.....+|+|.|+|.+.|..+.  ...++.|.|..+|.+.+
T Consensus       163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~  221 (313)
T 4fqp_A          163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI  221 (313)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEE
T ss_pred             ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccc
Confidence            1111 11      135888888899999999999998765  45556666766776543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.89  E-value=1.5e-21  Score=138.69  Aligned_cols=179  Identities=17%  Similarity=0.234  Sum_probs=119.0

Q ss_pred             ecccceEEecCCcEEEEeeCCCC--CCCCeeEEeeCC--E--Eec------------cccCceEEEec-----CcEEEEc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H--PID------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~--~--~~~------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      ..|.+..+.+|+.++|.|.+ .+  .+.+.+.||+..  .  ...            .....++....     ..+|.|.
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSV-TGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEE-EESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCeEEcCCCcEEEEEEE-EcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            34556779999999999997 44  346799999832  1  110            11223444432     2269999


Q ss_pred             ccCCCCCceEEEEEEcCCCC---cccceeEEEEeec--------------ceEEeCCCceeEeCCCcEEEEEEeCCCCCc
Q psy573           86 DSRKTDDGRYQCVVKNVAGT---RESTDAVLRVLVK--------------PYIIRGPKDTTVSAGSIIVFECSVGGDAVL  148 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  148 (216)
                      +++.+|+|.|.|.+.+..+.   .......|.|..+              +.+...+....+.+|+++.|.|.+.+.+.+
T Consensus        92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  171 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS  171 (257)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred             CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence            99999999999999986211   1233456777654              456666667789999999999999888877


Q ss_pred             -EEEEeeCC--ccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecc
Q psy573          149 -TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKY  208 (216)
Q Consensus       149 -~i~W~~~~--~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p  208 (216)
                       .+.|++..  ..+.             ..++...   ....|.|.+++.+|+|.|.|.+.+.... ...-..|.|...+
T Consensus       172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence             89999842  2211             1222211   1235999999999999999999875433 2233456666444

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.89  E-value=4.9e-23  Score=144.36  Aligned_cols=170  Identities=17%  Similarity=0.244  Sum_probs=113.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCC--EEe---c-------cccCceEEEe---cCcEEEEcccCCCCCce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNG--HPI---D-------FENSKRLRLV---DGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~--~~~---~-------~~~~~~~~~~---~~~~l~i~~~~~~d~g~   94 (216)
                      |....+.+|+.++|.|.+....+.+ .+.||++.  ...   .       .....++...   ...+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            7778899999999999983223334 79999863  211   0       0112344333   23479999999999999


Q ss_pred             EEEEEEcCCCC--cccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCee-
Q psy573           95 YQCVVKNVAGT--RESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMS-  165 (216)
Q Consensus        95 y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~-  165 (216)
                      |.|.+.+..+.  .......|.|.    .+|.+...+.......|+.+.|.|.+.+.++  +.+.|++++..+...... 
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999987652  12223445553    2344433233333346889999999987643  389999999877543111 


Q ss_pred             ---------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          166 ---------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       166 ---------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                               ....+.|.|..+..+|.|.|+|.|.|..+...+++
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence                     11124588889999999999999999988765554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.89  E-value=2.5e-23  Score=152.86  Aligned_cols=185  Identities=18%  Similarity=0.224  Sum_probs=116.0

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEEEe-c------CcEEEE
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLV-D------GTNLAI   84 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~-~------~~~l~i   84 (216)
                      ..+.|.|...+....+......+.+|+.+.|.|.+ .+.|.+  .+.|++++..+..... ..... .      ...|.|
T Consensus       107 ~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~-~g~p~~~~~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i  184 (327)
T 2wng_A          107 AGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES-HGFSPRDITLKWFKNGNELSDFQT-NVDPVGESVSYSIHSTAKV  184 (327)
T ss_dssp             CCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEE-EEEBSSCCEEEEEETTEECCCEEE-EEECSSCCSCEEEEEEEEE
T ss_pred             CcEEEEEEecCCCceeeccccccCCCCEEEEEEEE-eCccCCCcEEEEEECCEEcccccc-ccccccCCCceEEEEEEEE
Confidence            34567776654433333444678899999999998 555544  8999999988743221 01000 1      124777


Q ss_pred             cccCCCCCceEEEEEEcCCCCc--ccceeEE--EEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-Cc-EEEEeeCCcc
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTR--ESTDAVL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VL-TVHWKRLGSA  158 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~i~W~~~~~~  158 (216)
                      .....+|.|.|+|.+.+..+..  ......+  .+..+|.+...+..  +.+|+.+.|.|.+.+.+ .+ .+.|++++..
T Consensus       185 ~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~  262 (327)
T 2wng_A          185 VLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNV  262 (327)
T ss_dssp             ECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             echhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeE
Confidence            7777777899999999876542  1112222  34556666544333  67899999999998854 43 7999999987


Q ss_pred             CCCC---CeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEE
Q psy573          159 MPED---RMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK-ISASATL  202 (216)
Q Consensus       159 ~~~~---~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l  202 (216)
                      +...   ......+      ..|.|..+..+|.|.|+|.|.|..+. .++++.+
T Consensus       263 l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          263 SRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             EEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             ccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence            6421   1111122      34778888999999999999999987 4555443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.88  E-value=5.6e-23  Score=150.14  Aligned_cols=171  Identities=16%  Similarity=0.245  Sum_probs=123.1

Q ss_pred             cceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecc--ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDF--ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      ..+.+.+|+.+.|.|.+ .+.+ .+.+.|++++.....  ....++... ++.|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus        13 ~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~   89 (315)
T 1itb_B           13 IILVSSANEIDVRPCPL-NPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCL-R   89 (315)
T ss_dssp             CCCEEETTSCCCCBCCC-CSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCC-C
T ss_pred             eEEEEcCCCcEEEEeec-cCcCCCceEEEEeCCCcCccccccCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEE-E
Confidence            35789999999999998 5555 789999999864321  223333333 4589999999999999999999876653 2


Q ss_pred             ceeEEEEe-ecceEEeCC---CceeEeCCCcEEEEEEe------CCCCCcEEEEeeCCccCCCCC-eeeecCCeEEEecC
Q psy573          109 TDAVLRVL-VKPYIIRGP---KDTTVSAGSIIVFECSV------GGDAVLTVHWKRLGSAMPEDR-MSVLPSRSLQLSDV  177 (216)
Q Consensus       109 ~~~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~l~i~~~  177 (216)
                      ..+.+.+. .+|.+...+   ....+..|+.+.|.|.+      .+.|.+.+.|++++..+.... ........|.|.++
T Consensus        90 ~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v  169 (315)
T 1itb_B           90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV  169 (315)
T ss_dssp             EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSC
T ss_pred             EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEec
Confidence            23333332 233222111   12467789999999998      788999999999998875432 23345678999999


Q ss_pred             CCCCCeEEEEEEE-cCCcce---EEEEEEEEE
Q psy573          178 RLEDGGEYVCEAE-NAVGKI---SASATLTVQ  205 (216)
Q Consensus       178 ~~~d~g~y~C~~~-n~~~~~---~~~~~l~v~  205 (216)
                      ..+|+|.|+|.+. |..|..   ...+.+.+.
T Consensus       170 ~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             eehhCcEEEEEEEcCCCCcEEEEEEEEEEEEe
Confidence            9999999999999 777775   445555444

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=147.21  Aligned_cols=176  Identities=18%  Similarity=0.194  Sum_probs=128.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.++|.|.+ .+    .+.|++++...     ...... ..+.|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVG-NG----SVEWDGPPSPH-----WTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEEC-SS----CCCBCCCCCSS-----CEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcC-CC----ceEEccCCCCc-----eEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            5777778888899999999999998 44    28999754321     111111 1248999999999999999999887


Q ss_pred             CCCcccceeEEEEeecce-EEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC-ccCCCC-CeeeecCCeEEEecC
Q psy573          103 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG-SAMPED-RMSVLPSRSLQLSDV  177 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~-~~~~~~-~~~~~~~~~l~i~~~  177 (216)
                      .+.. ...+.|.|..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|++++ ..+... +........|.|.++
T Consensus        74 ~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~  151 (292)
T 4dkd_C           74 PLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRA  151 (292)
T ss_dssp             ---C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTC
T ss_pred             CCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCC
Confidence            6554 5567778877664 355566778899999999999987 44  689999974 333332 333444566999999


Q ss_pred             CCCCCeEEEEEEEcCCcce-EEEEEEEEEe----cceee
Q psy573          178 RLEDGGEYVCEAENAVGKI-SASATLTVQS----KYLKV  211 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~~~~-~~~~~l~v~~----~p~~~  211 (216)
                      ..+|+|.|+|.+.|..+.. +..+.|.|..    +|.+.
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~  190 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALT  190 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEE
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEE
Confidence            9999999999999887764 4478888886    55443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.88  E-value=4.6e-22  Score=137.27  Aligned_cols=167  Identities=14%  Similarity=0.238  Sum_probs=114.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEec--------------cccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID--------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~~--------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .|....+.+|+.++|.|.+ .+.+  .+.+.||++  +....              .....++.+..     ..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   84 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS   84 (210)
T ss_dssp             EESCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence            3556688999999999998 4443  478999985  22210              01234554432     23899999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCC
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMP  160 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~  160 (216)
                      ++.+|+|.|.|.+.+..  .......|.|..    +|.+...+....+..|+.+.|.|.+.+. |.| .+.|++++..+.
T Consensus        85 v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~  162 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  162 (210)
T ss_dssp             CCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence            99999999999998753  112335666652    4555443333456789999999999876 777 999999887542


Q ss_pred             C---CCe----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          161 E---DRM----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       161 ~---~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      .   ...    .....+.|.|.....+| |.|+|.|.|..|......
T Consensus       163 ~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          163 VHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             EEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             eEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            1   111    11122458888888877 999999999998865443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.88  E-value=7e-22  Score=140.36  Aligned_cols=162  Identities=20%  Similarity=0.344  Sum_probs=108.8

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--E---Eecc-------ccCceEEEec---CcEEEEcccCCCCC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PIDF-------ENSKRLRLVD---GTNLAIQDSRKTDD   92 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~---~~~~-------~~~~~~~~~~---~~~l~i~~~~~~d~   92 (216)
                      .|....+.+|++++|.|.+ .+.  +.+.+.||+..  .   .+..       ....++....   ..+|.|.+++.+|+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             CCSEEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             cCCcEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            4556789999999999998 444  67899999842  1   1100       1123343322   23799999999999


Q ss_pred             ceEEEEEEcCCCC--cccceeEEEEeecc---------------------eEEeCCCceeEeCCCcEEEEEEeCCCC--C
Q psy573           93 GRYQCVVKNVAGT--RESTDAVLRVLVKP---------------------YIIRGPKDTTVSAGSIIVFECSVGGDA--V  147 (216)
Q Consensus        93 g~y~C~~~~~~~~--~~~~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~  147 (216)
                      |.|.|.+.+..+.  .......|.|..++                     .+.. +....+.+|+.+.|.|.+.+.+  .
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~  165 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSS  165 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGG
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccc
Confidence            9999999985432  12334567776544                     2222 3345688999999999998766  7


Q ss_pred             cEEEEeeCCc--cCC------------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          148 LTVHWKRLGS--AMP------------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       148 ~~i~W~~~~~--~~~------------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +.+.|+++..  .+.                  ..++....     ...|.|.+++.+|+|.|.|.+.|..
T Consensus       166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            7899998632  110                  01222221     1249999999999999999999863

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.88  E-value=1.9e-21  Score=138.84  Aligned_cols=161  Identities=17%  Similarity=0.252  Sum_probs=119.5

Q ss_pred             eEEecCCcEEEEeeCCCC-CCCC--eeEEeeCCEEeccccCceEEEecCcEEEEccc---CCCCCce--EEEEEEcCCCC
Q psy573           34 QRVAAGDTALLECGPPRG-HPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS---RKTDDGR--YQCVVKNVAGT  105 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~-~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g~--y~C~~~~~~~~  105 (216)
                      ..+.+|+.++|.|.+ .+ .|.+  .+.|++++..+..    . ....+..+.+..+   +.+|+|.  |+|.+.+..+.
T Consensus        13 ~~v~~G~~v~l~C~~-~g~~p~p~~~v~W~k~~~~l~~----~-~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~   86 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP----T-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS   86 (265)
T ss_dssp             SEEETTEEEEEEEEE-ESCSCGGGCEEEEEETTEECCC----E-EEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE
T ss_pred             ceEecCCCEEEEEEc-cCCCCCcceEEEEEeCCEECCc----e-EeeCCCeEEEEeecccccccCCcceEEEEEecCCCC
Confidence            478899999999998 44 6666  9999999988732    2 2233446666665   7788885  99999998765


Q ss_pred             cccceeEEEEee--cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCe
Q psy573          106 RESTDAVLRVLV--KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGG  183 (216)
Q Consensus       106 ~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  183 (216)
                      . ...+.|.|..  +|.+.  +....+.+|+.+.|.|.+.  |.+.+.|  ++..+....    ....|.|..+..+|+|
T Consensus        87 ~-~~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----~~~~l~i~~~~~~~~g  155 (265)
T 2oz4_A           87 Q-ETLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGR  155 (265)
T ss_dssp             E-EEEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----SEECCEEECCGGGTTE
T ss_pred             c-EEEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----CcEEEEEccccccCCc
Confidence            4 4567777765  33443  3455788899999999998  8899999  776663321    2255888999999999


Q ss_pred             EEEEEEEcCC-cceE---EEEEEEEEecceee
Q psy573          184 EYVCEAENAV-GKIS---ASATLTVQSKYLKV  211 (216)
Q Consensus       184 ~y~C~~~n~~-~~~~---~~~~l~v~~~p~~~  211 (216)
                      .|+|.+.|.. |...   ..+.|.|..+|.+.
T Consensus       156 ~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~  187 (265)
T 2oz4_A          156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLD  187 (265)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEEEEECC
T ss_pred             eEEEEEEcCCCCCcccccccEEEEEEeCCccc
Confidence            9999998644 6644   77888888877654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.88  E-value=1.9e-21  Score=137.47  Aligned_cols=166  Identities=17%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCC-----CCeeEEeeCC--EE---ecc-------ccCceEEEec---CcEEEEc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HP---IDF-------ENSKRLRLVD---GTNLAIQ   85 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~-----~~~~~W~~~~--~~---~~~-------~~~~~~~~~~---~~~l~i~   85 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.+     .+.+.||++.  ..   +..       ....++....   ..+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   81 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS   81 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEecCCeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence            34556777889999999999998 5555     6899999842  11   100       0123443321   2379999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEeecc-------------eEEeCCCceeEeCCCcEEEEEEeCCCC--CcEE
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-------------YIIRGPKDTTVSAGSIIVFECSVGGDA--VLTV  150 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i  150 (216)
                      +++.+|+|.|.|.+.+..+........|.|..++             .....+....+.+|+.+.|.|.+.+.+  .+.+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  161 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM  161 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence            9999999999999988654322334567776542             122233445688999999999998774  5689


Q ss_pred             EEeeCCc--cCC------------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          151 HWKRLGS--AMP------------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       151 ~W~~~~~--~~~------------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .|+++..  .+.                  ..+.....     ...|.|.+++.+|+|.|.|.+.|.
T Consensus       162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            9999642  110                  12222221     247999999999999999999985

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.88  E-value=4e-21  Score=133.78  Aligned_cols=169  Identities=14%  Similarity=0.210  Sum_probs=114.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--E---Eec------------cccCceEEEec-----CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~---~~~------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      |..+.+.+|+.++|.|.+ .+.+  .+.+.||+..  .   .+.            ....+++.+..     +.+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             ECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            456789999999999997 4433  4689999853  1   110            01234555432     24799999


Q ss_pred             cCCCCCceEEEEEEcCCC----C-cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEee-
Q psy573           87 SRKTDDGRYQCVVKNVAG----T-RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKR-  154 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~----~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~-  154 (216)
                      ++.+|+|.|.|.+.+..+    . .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.|++ 
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            999999999999987642    1 112345677763    4444432222345689999999999876 766 999999 


Q ss_pred             CCccCCCC--------CeeeecCCeEEEecCCC--CCCeEEEEEEEcCCcceEEEE
Q psy573          155 LGSAMPED--------RMSVLPSRSLQLSDVRL--EDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       155 ~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ++..+...        .......+.|.|.....  +|.|.|+|.+.|..+.....+
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            88776430        00111124577877766  789999999999998866544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.88  E-value=2.4e-21  Score=134.61  Aligned_cols=165  Identities=16%  Similarity=0.275  Sum_probs=113.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--E---Eec------------cccCceEEEec-----CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~---~~~------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      |..+.+.+|++++|.|.+ .+.+  .+.+.||+..  .   .+.            ....+++....     +.+|.|.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            445789999999999997 4433  5789999853  1   110            01234555542     24799999


Q ss_pred             cCCCCCceEEEEEEcCCCC--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CC--cEEEEeeCCc
Q psy573           87 SRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AV--LTVHWKRLGS  157 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~~~~  157 (216)
                      ++.+|+|.|.|.+.+..+.  .......|.|..    +|.+...+ ...+..|+.+.|.|.+.+. |.  +.+.|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence            9999999999999886442  122345677763    34554433 3345689999999999876 65  7899999987


Q ss_pred             cCCC--CCeeeec------CCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          158 AMPE--DRMSVLP------SRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       158 ~~~~--~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      .+..  .......      .+.|.|.....+|.|.|+|.+.|..+...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            6511  0000111      13488888888899999999999988744

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.88  E-value=2.8e-21  Score=137.90  Aligned_cols=167  Identities=16%  Similarity=0.279  Sum_probs=114.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC------CCeeEEeeC--CEE---ecc-------ccCceEEEec---CcEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP------EPTLVWKKN--GHP---IDF-------ENSKRLRLVD---GTNLA   83 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~------~~~~~W~~~--~~~---~~~-------~~~~~~~~~~---~~~l~   83 (216)
                      +.+...|..+.+.+|+.++|.|.+ .+.+      .+.+.||+.  +..   +..       ....++....   ..+|.
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            445566777899999999999998 5555      578999985  221   100       1123444332   24799


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecc------------------eE-EeCCCceeEeCCCcEEEEEEeCC
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------------------YI-IRGPKDTTVSAGSIIVFECSVGG  144 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~~  144 (216)
                      |.+++.+|+|.|.|.+.+..+........|.|..+|                  .+ ...+....+.+|+++.|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            999999999999999987654322334567776543                  11 12223347889999999999987


Q ss_pred             CCC--cEEEEeeCC--ccCC------------------CCCeeee-----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          145 DAV--LTVHWKRLG--SAMP------------------EDRMSVL-----PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       145 ~p~--~~i~W~~~~--~~~~------------------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+.  +.+.|+++.  ..+.                  ..+....     ....|.|.+++.+|+|.|.|.+.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            763  789999864  2110                  1122221     1247999999999999999999985

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.88  E-value=9.2e-24  Score=148.01  Aligned_cols=170  Identities=17%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Ee---c-------cccCceEEEe---cCcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PI---D-------FENSKRLRLV---DGTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~---~-------~~~~~~~~~~---~~~~l~i~~~~~   89 (216)
                      +.+...|..+.+.+|++++|.|.+ .+.+.+.+.||+++.  ..   .       .....++...   .+.+|.|.+++.
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             eeEEEcCCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            445556778889999999999997 566667899998531  11   0       0011122111   223799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCC-C
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMPED-R  163 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~  163 (216)
                      +|+|.|.|.+.+..+........|.|..   +|.+...+.......|+.+.|.|.+.+. |.+ .+.|++++..+... .
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  182 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  182 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence            9999999999876543323233455543   5655553433334468999999999875 443 79999999876544 1


Q ss_pred             eee----------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          164 MSV----------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       164 ~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...          ...+.|.|.....+|+|.|+|.|.|....
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            110          11135888888889999999999997654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.87  E-value=1e-21  Score=138.71  Aligned_cols=171  Identities=13%  Similarity=0.211  Sum_probs=116.4

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee----------------CCEEecc-ccCceEEEec----CcEEEE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK----------------NGHPIDF-ENSKRLRLVD----GTNLAI   84 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~----------------~~~~~~~-~~~~~~~~~~----~~~l~i   84 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.+.+.+.||+                ++..... ....++....    ..+|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            45566777899999999999988 666888999998                2221111 1113444332    347999


Q ss_pred             cccCCCCCceEEEEEEcCCC---CcccceeEEEEee------cceEE-eCCCceeEeCCCcEEEEEEeCCCCCc--EEEE
Q psy573           85 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYII-RGPKDTTVSAGSIIVFECSVGGDAVL--TVHW  152 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W  152 (216)
                      .+++.+|+|.|.|.+.+..+   ........|.|..      +|.+. ..+....+..|+.+.|.|.+.+.+++  .+.|
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            99999999999999986532   1122344666653      44443 33344455669999999999886654  8999


Q ss_pred             eeCCccCCCCCeeee---------cC------CeEEEecCCCCC-CeEEEEEEEcCCcceE
Q psy573          153 KRLGSAMPEDRMSVL---------PS------RSLQLSDVRLED-GGEYVCEAENAVGKIS  197 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~---------~~------~~l~i~~~~~~d-~g~y~C~~~n~~~~~~  197 (216)
                      ++++..+........         .+      ..|.|.....+| .|.|+|.|.|......
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            999887754321110         12      237788887778 9999999999876533

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.87  E-value=3.2e-21  Score=139.49  Aligned_cols=180  Identities=17%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EE---ec------------cccCceEEEec-----CcEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID------------FENSKRLRLVD-----GTNLA   83 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~---~~------------~~~~~~~~~~~-----~~~l~   83 (216)
                      ...|..+.+.+|++++|.|.+ .+.+  .+.+.||+..  ..   +.            .....++....     ..+|.
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  104 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME  104 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred             EEcCCcEEecCCCCEEEEEec-cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence            345667889999999999997 4544  5789999853  11   10            01123333321     34799


Q ss_pred             EcccCCCCCceEEEEEEcCC-C--C-cccceeEEEEee----------------cceEEeCCCceeEeCCCcEEEEEEeC
Q psy573           84 IQDSRKTDDGRYQCVVKNVA-G--T-RESTDAVLRVLV----------------KPYIIRGPKDTTVSAGSIIVFECSVG  143 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~-~--~-~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~  143 (216)
                      |.+++.+|+|.|.|.+.+.. +  . .......|.|..                ++.+...+....+.+|+++.|.|.+.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  184 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSS  184 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEES
T ss_pred             ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcC
Confidence            99999999999999998763 1  1 112234666665                23344455667889999999999998


Q ss_pred             CCCCc------EEEEeeCC--ccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEE
Q psy573          144 GDAVL------TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISA  198 (216)
Q Consensus       144 ~~p~~------~i~W~~~~--~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~  198 (216)
                      +.+.+      .+.|+++.  ..+.             ..++...   ....|.|.+++.+|+|.|.|.+.|.... ...
T Consensus       185 ~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~  264 (291)
T 2gki_A          185 QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGS  264 (291)
T ss_dssp             SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcC
Confidence            88765      89999963  2111             1222221   1246999999999999999999985432 222


Q ss_pred             EEEEEEEecc
Q psy573          199 SATLTVQSKY  208 (216)
Q Consensus       199 ~~~l~v~~~p  208 (216)
                      -..|.|+..+
T Consensus       265 gt~l~v~~~~  274 (291)
T 2gki_A          265 GTKLEIKHHH  274 (291)
T ss_dssp             CEEEEEECC-
T ss_pred             CEEEEEEeeE
Confidence            3345555444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.87  E-value=5.7e-22  Score=151.02  Aligned_cols=170  Identities=19%  Similarity=0.248  Sum_probs=119.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCC----CeeEEeeCC--EEec----------cccCceEEEe---cCcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKNG--HPID----------FENSKRLRLV---DGTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~----~~~~W~~~~--~~~~----------~~~~~~~~~~---~~~~l~i~~~   87 (216)
                      +...|..+.+.+|+.++|.|.+ .+.+.    +.+.||+++  ..+.          .....++...   ....|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             eEecCCeEEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            4455777889999999999997 55554    489999963  2110          0112344332   1247999999


Q ss_pred             CCCCCceEEEEEEcCCCCcccceeEEEEee---cceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCCccCCCC
Q psy573           88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLGSAMPED  162 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~  162 (216)
                      +.+|+|.|+|.+.+..+........+.|..   +|.+...+.......|+.+.|.|.+.+ .|.+ .+.|++++..+...
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~  162 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  162 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCC
Confidence            999999999999987664334445666653   555554333333446789999999976 5666 89999999876544


Q ss_pred             Cee-----------eecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          163 RMS-----------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       163 ~~~-----------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ...           ....+.|.|.++..+|+|.|+|.+.|..+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  208 (438)
T 1qgc_4          163 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  208 (438)
T ss_dssp             EEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             ceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCc
Confidence            110           11124689999999999999999999988743

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=139.91  Aligned_cols=176  Identities=14%  Similarity=0.265  Sum_probs=114.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCCE--Ee---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNGH--PI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~~--~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      |..+.+.+|++++|.|.+ .+.  +.+.+.||+...  ..               ......++....+     .+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTS-SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEE-CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEe-eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            677889999999999998 443  557899998421  10               0111234443311     3799999


Q ss_pred             cCCCCCceEEEEEEcC--------CCCcccceeEEEEee---------------cceEEeCCCceeEeCCCcEEEEEEeC
Q psy573           87 SRKTDDGRYQCVVKNV--------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSAGSIIVFECSVG  143 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~  143 (216)
                      ++.+|+|.|.|.+.+.        ..........|.|..               ++.+...+. ..+.+|+++.|.|.+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECC
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEec
Confidence            9999999999999876        112223345666665               344444444 7888999999999998


Q ss_pred             C-CC-CcEEEEeeCC--ccCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEEEEcCCcc---eEEEE
Q psy573          144 G-DA-VLTVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGK---ISASA  200 (216)
Q Consensus       144 ~-~p-~~~i~W~~~~--~~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~---~~~~~  200 (216)
                      + .+ .+.+.|++..  ..+.             ..++...   ....|.|.+++.+|+|.|.|.+.|..+.   ....+
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t  244 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGT  244 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCC
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCE
Confidence            7 33 4789998742  2111             1122221   1135999999999999999999987622   23334


Q ss_pred             EEEEEecc
Q psy573          201 TLTVQSKY  208 (216)
Q Consensus       201 ~l~v~~~p  208 (216)
                      .|.|...|
T Consensus       245 ~l~V~~~~  252 (280)
T 3fku_X          245 KLTVLGQP  252 (280)
T ss_dssp             EEEEC---
T ss_pred             EEEECCCC
Confidence            56665433

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.87  E-value=2.5e-21  Score=134.98  Aligned_cols=165  Identities=17%  Similarity=0.253  Sum_probs=111.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec---------------cccCceEEEec-----CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      |....+.+|++++|.|.+ .+.+  .+.+.||+..  ....               .....++....     +.+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             ECCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            455789999999999998 4444  5789999853  2110               01234555442     35799999


Q ss_pred             cCCCCCceEEEEEEcCCC-----C--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEe
Q psy573           87 SRKTDDGRYQCVVKNVAG-----T--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWK  153 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~  153 (216)
                      ++.+|+|.|.|.+.+..+     .  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.|+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            999999999999998653     1  112345677764    3444332222235679999999999876 666 99999


Q ss_pred             eCCccCCCC---Cee-----eecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          154 RLGSAMPED---RMS-----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       154 ~~~~~~~~~---~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      +++..+...   ...     ....+.|.|.....+| |.|+|.|.|..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            988653211   010     1112358888888888 999999999776544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.87  E-value=5e-22  Score=151.33  Aligned_cols=189  Identities=17%  Similarity=0.243  Sum_probs=122.4

Q ss_pred             hhceeeEEe--eccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEE--------ecCcEE
Q psy573           14 EKKKLKIEM--LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRL--------VDGTNL   82 (216)
Q Consensus        14 ~~~~l~v~~--~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~--------~~~~~l   82 (216)
                      ..+.|.|..  .+|.+.+.+......+|+.+.|.|.+....|.+ .+.|++++..+..........        ...+.|
T Consensus       104 ~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L  183 (438)
T 1qgc_4          104 AGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTL  183 (438)
T ss_dssp             CCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEE
T ss_pred             CceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEE
Confidence            345566643  245555544333345688999999983335666 899999998874321000111        012369


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcccceeEEEEee--cceEEeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeC--C
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV--KPYIIRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRL--G  156 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~  156 (216)
                      .|.++..+|+|.|+|.+.+..+..   .+.+.+..  .+.....+....+.+|+.+.|.|.+.+.|  .+.+.|+++  +
T Consensus       184 ~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g  260 (438)
T 1qgc_4          184 TLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPE  260 (438)
T ss_dssp             EEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETT
T ss_pred             EEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCC
Confidence            999999999999999999976653   22333322  22222334566788999999999999887  678999986  3


Q ss_pred             ccCC------------------CCCeeeec-----CCeEEEecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEE
Q psy573          157 SAMP------------------EDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAVG-----KISASATLTVQ  205 (216)
Q Consensus       157 ~~~~------------------~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~~-----~~~~~~~l~v~  205 (216)
                      ..+.                  ..+.....     ...|.|.+++.+|+|.|+|.+.|..+     .......|.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~  337 (438)
T 1qgc_4          261 KRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVS  337 (438)
T ss_dssp             TEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred             CCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence            3221                  12332221     23799999999999999999998443     22233456665

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=138.13  Aligned_cols=169  Identities=18%  Similarity=0.266  Sum_probs=114.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe-------------ccccC-ceEEEec----CcEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI-------------DFENS-KRLRLVD----GTNLAI   84 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~-------------~~~~~-~~~~~~~----~~~l~i   84 (216)
                      +.+...|..+.+.+|++++|.|.+ . .+.+.+.||+.  +...             ..... +++....    +.+|.|
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDP-I-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBC-B-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEe-C-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            456666777899999999999997 3 57789999982  2111             00111 4555543    457999


Q ss_pred             cccCCCCCceEEEEEEcCC-CCcccceeEEEEee------cceEEe-CCCceeEeCCCcEEEEEEeCCCCCc--EEEEee
Q psy573           85 QDSRKTDDGRYQCVVKNVA-GTRESTDAVLRVLV------KPYIIR-GPKDTTVSAGSIIVFECSVGGDAVL--TVHWKR  154 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~  154 (216)
                      .+++.+|+|.|+|.+.+.. .........|.|..      +|.+.. .+....+..|+.+.|.|.+.+.+++  .+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            9999999999999999742 22223344666654      454433 3344455568999999999886554  899999


Q ss_pred             CCccCCCCCee---------------eecCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          155 LGSAMPEDRMS---------------VLPSRSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       155 ~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      ++..+......               ......|.|.....+| +|.|+|.+.|....
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            98877543111               1111346777776666 99999999988654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.87  E-value=9.4e-21  Score=132.68  Aligned_cols=175  Identities=15%  Similarity=0.190  Sum_probs=111.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--E---Eec-----------cccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID-----------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~---~~~-----------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .|..+.+.+|++++|.|.+ .+.+  .+.+.||+..  .   .+.           ....+++....     +.+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (232)
T ss_dssp             EECCCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEeCCCcEEEEEEE-ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence            3455789999999999997 4433  5789999852  1   110           01234555432     23899999


Q ss_pred             cCCCCCceEEEEEEcCC--CC---cccceeEEEEee----cceEEeCCCceeEeCC-CcEEEEEEeCCC-CCc-EEEEee
Q psy573           87 SRKTDDGRYQCVVKNVA--GT---RESTDAVLRVLV----KPYIIRGPKDTTVSAG-SIIVFECSVGGD-AVL-TVHWKR  154 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~i~W~~  154 (216)
                      ++.+|+|.|.|.+....  +.   .......|.|..    +|.+........+..| +.+.|.|.+.+. |.+ .+.|++
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~  164 (232)
T 1dn0_B           85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKY  164 (232)
T ss_dssp             CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred             CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence            99999999999998421  11   122345777764    2444322222234577 899999999876 766 999999


Q ss_pred             -CCccCCCC----C----eeeecCCeEEEecCCC--CCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          155 -LGSAMPED----R----MSVLPSRSLQLSDVRL--EDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       155 -~~~~~~~~----~----~~~~~~~~l~i~~~~~--~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                       ++..+...    .    ......+.|.|.....  +|.|.|+|.+.|..+.......+.+.
T Consensus       165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             CCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence             88765430    0    0111224578888776  78999999999999887666655544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.87  E-value=3.2e-21  Score=137.92  Aligned_cols=168  Identities=20%  Similarity=0.301  Sum_probs=111.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-----CCeeEEeeCC--E---Eecc-------ccCceEEEe---cCcEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--H---PIDF-------ENSKRLRLV---DGTNLA   83 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-----~~~~~W~~~~--~---~~~~-------~~~~~~~~~---~~~~l~   83 (216)
                      .+.+...|..+.+.+|++++|.|.+ .+.+     .+.+.||+..  .   .+..       ....++...   ...+|.
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            4566667778889999999999998 4544     4789999853  2   1110       012344433   124799


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecce-----------------------EEeCCCceeEeCCCcEEEEE
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY-----------------------IIRGPKDTTVSAGSIIVFEC  140 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C  140 (216)
                      |.+++.+|+|.|.|.+.+..+........|.|...+.                       ....+....+.+|+.+.|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            9999999999999999876543222334555554321                       12223456788999999999


Q ss_pred             EeCCCCC--cEEEEeeCC--ccC--------------------CCCCeeeec-----CCeEEEecCCCCCCeEEEEEEEc
Q psy573          141 SVGGDAV--LTVHWKRLG--SAM--------------------PEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       141 ~~~~~p~--~~i~W~~~~--~~~--------------------~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+.+.+.  +.+.|+++.  ..+                    ...+.....     ...|.|.+++.+|+|.|.|.+.+
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            9987653  789999853  111                    112333221     24699999999999999999987


Q ss_pred             C
Q psy573          192 A  192 (216)
Q Consensus       192 ~  192 (216)
                      .
T Consensus       254 ~  254 (268)
T 1x9q_A          254 Y  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.86  E-value=3.1e-20  Score=129.07  Aligned_cols=163  Identities=18%  Similarity=0.312  Sum_probs=109.9

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--EE---e--------------ccccCceEEEecC-----cEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--HP---I--------------DFENSKRLRLVDG-----TNLAI   84 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~~---~--------------~~~~~~~~~~~~~-----~~l~i   84 (216)
                      |..+.+.+|+.++|.|.+ .+.  +.+.+.||+..  ..   +              .....+++....+     .+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAA-SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             ESCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCCEEEEEEc-ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            445678999999999998 432  35789999742  11   1              0112345554322     26999


Q ss_pred             cccCCCCCceEEEEEEcCCC-CcccceeEEEEe----ecceEE-eCCCceeEeCCCcEEEEEEeCC-CCC--cEEEEeeC
Q psy573           85 QDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVL----VKPYII-RGPKDTTVSAGSIIVFECSVGG-DAV--LTVHWKRL  155 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~i~W~~~  155 (216)
                      .+++.+|+|.|.|.+.+... ........|.|.    .+|.+. ..+...  ..|+.+.|.|.+.+ .|.  +.+.|+++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            99999999999999987641 222334566665    234443 222222  68999999999987 565  48999999


Q ss_pred             CccCCC---------CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          156 GSAMPE---------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       156 ~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      +..+..         ........+.|.|.....+|+|.|+|.|.|..+..
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            876621         11111122458899999999999999999987653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.86  E-value=7.3e-21  Score=132.89  Aligned_cols=169  Identities=15%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCC----CeeEEeeCC--EE---ec-----------cccCceEEEec-----CcEEEEc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPE----PTLVWKKNG--HP---ID-----------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~----~~~~W~~~~--~~---~~-----------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      |..+.+.+|+.++|.|.+ .+.+.    +.+.||+..  ..   +.           ....+++.+..     +.+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             ECCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            456789999999999998 55553    789999842  21   10           01234555432     2589999


Q ss_pred             ccCCCCCceEEEEEEcCCC------C--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEE
Q psy573           86 DSRKTDDGRYQCVVKNVAG------T--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVH  151 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~  151 (216)
                      +++.+|+|.|.|.+.+..+      .  .......|.|..    +|.+...+....+..|+.+.|.|.+.+. |.+ .+.
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence            9999999999999987653      1  112335677763    4555443333346789999999999876 777 999


Q ss_pred             EeeCCccCCCCCe-------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          152 WKRLGSAMPEDRM-------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       152 W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      |++++..+.....       .....+.|.|.....++ |.|+|.+.|..+.......
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            9998865421100       11123458888888766 9999999999987665444

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.86  E-value=1.7e-22  Score=140.28  Aligned_cols=171  Identities=15%  Similarity=0.190  Sum_probs=110.0

Q ss_pred             ccceEecccceE--EecCCcEEEEeeCCCCC---C-CCeeEEeeCCEEeccccCceEEE------ecCcEEEEcccCCCC
Q psy573           24 REEFRVQPKSQR--VAAGDTALLECGPPRGH---P-EPTLVWKKNGHPIDFENSKRLRL------VDGTNLAIQDSRKTD   91 (216)
Q Consensus        24 ~~~~~~~~~~~~--~~~G~~~~l~C~~~~~~---~-~~~~~W~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d   91 (216)
                      +|.+.+.+....  +.+|+.++|.|.+ .+.   + .+.+.||+++..+..........      ...+.|.|.+++.+|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVV-VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEE-EEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEE-cCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            355555555544  7899999999998 444   3 37999999997763211100000      112469999999999


Q ss_pred             CceEEEEEEcCCCCc-ccceeE--EEEeecceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCCccCCCCC---
Q psy573           92 DGRYQCVVKNVAGTR-ESTDAV--LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLGSAMPEDR---  163 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~-~~~~~~--l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~---  163 (216)
                      +|.|+|.+.+..+.. ....+.  +.+..+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|++++..+....   
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  167 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA  167 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence            999999999876532 111121  13445666654443333335899999999988 5655 899999998764321   


Q ss_pred             eeeecCCe------EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          164 MSVLPSRS------LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       164 ~~~~~~~~------l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .....+++      |.+.....+|.|.|+|.|.|....
T Consensus       168 ~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          168 PVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            11122333      344444444689999999998765

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.86  E-value=2.2e-20  Score=131.38  Aligned_cols=169  Identities=14%  Similarity=0.195  Sum_probs=113.7

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--------------CEEe-ccccCceEEEec----CcEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--------------GHPI-DFENSKRLRLVD----GTNLAIQ   85 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--------------~~~~-~~~~~~~~~~~~----~~~l~i~   85 (216)
                      ..+...|..+.+.+|+.++|.|.+ .+ +.+.+.||+.              +... ......++....    +.+|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   80 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS   80 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred             cccccCcceeeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence            345566777899999999999998 43 7789999982              1111 111223444432    3479999


Q ss_pred             ccCCCCCceEEEEEEcC--CCCcccceeEEEEe------ecceEEe-CCCceeEeCCCcEEEEEEeCC-CCCc-EEEEee
Q psy573           86 DSRKTDDGRYQCVVKNV--AGTRESTDAVLRVL------VKPYIIR-GPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKR  154 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~  154 (216)
                      +++.+|+|.|.|.+.+.  ..........+.|.      .+|.+.. .+....+..|+.+.|.|.+.+ .|.+ .+.|++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  160 (240)
T 3q5y_A           81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  160 (240)
T ss_dssp             SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence            99999999999999732  22222334556665      3444443 334445556899999999987 4555 799999


Q ss_pred             CCccCCCCCee-----eecC------CeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          155 LGSAMPEDRMS-----VLPS------RSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       155 ~~~~~~~~~~~-----~~~~------~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      ++..+......     ...+      +.|.|.....+| +|.|+|.+.|....
T Consensus       161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            99877543211     1112      248888888888 77999999987654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.86  E-value=1.7e-20  Score=132.32  Aligned_cols=169  Identities=17%  Similarity=0.211  Sum_probs=114.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--------------CEEecc-ccC-ceEEEec----CcEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--------------GHPIDF-ENS-KRLRLVD----GTNLAI   84 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--------------~~~~~~-~~~-~~~~~~~----~~~l~i   84 (216)
                      +.+...|..+.+.+|+.++|.|.  .+.+.+.+.||+.              +..... ... .++....    +.+|.|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNCD--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEE--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             cceEeCCceEEecCCCCEEEEEE--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence            45566777789999999999994  4667889999981              211111 111 4555443    237999


Q ss_pred             cccCCCCCceEEEEEEcCC---CCcccceeEEEEe------ecceEE-eCCCceeEeCCCcEEEEEEeCCC-CCc-EEEE
Q psy573           85 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVL------VKPYII-RGPKDTTVSAGSIIVFECSVGGD-AVL-TVHW  152 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W  152 (216)
                      .+++.+|+|.|.|.+.+..   .........|.|.      .+|.+. ..+....+..|+.+.|.|.+.+. |.+ .+.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            9999999999999998532   1222334566665      345443 33344455669999999999874 444 8999


Q ss_pred             eeCCccCCCCCee---------------eecCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          153 KRLGSAMPEDRMS---------------VLPSRSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       153 ~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      ++++..+......               ......|.|.....+| +|.|+|.+.|....
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            9999877543211               1111347788877777 99999999987654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.86  E-value=3.6e-21  Score=142.37  Aligned_cols=165  Identities=15%  Similarity=0.260  Sum_probs=113.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEec---------------cccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~~---------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .|..+.+.+|+.++|.|.+ .+.  +.+.+.||++  +..+.               .....++.+..     ..+|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKA-SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCcEEEEEEc-CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            3456789999999999998 443  3678999986  33221               01234555432     2479999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAM  159 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~  159 (216)
                      +++.+|+|.|.|.+.+..+. ......|.|.    .+|.+...+....+..|+.+.|.|.+.+. |. +.+.|++++..+
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  163 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS  163 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred             CCCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence            99999999999999884332 2334567776    34555443333446789999999999876 54 699999998753


Q ss_pred             CCC---C-----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          160 PED---R-----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       160 ~~~---~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ...   .     ......+.|.|..+..+| |.|+|.+.|..+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            210   0     011112368888888878 999999999988643

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.85  E-value=7.1e-21  Score=134.12  Aligned_cols=176  Identities=16%  Similarity=0.198  Sum_probs=115.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--E---Eecc-----------c-cCceEEEe-----cCcE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PIDF-----------E-NSKRLRLV-----DGTN   81 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~---~~~~-----------~-~~~~~~~~-----~~~~   81 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.  +.+.+.||+..  .   .+..           . ..+++.+.     .+.+
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEe-CCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            45556778899999999999997 343  56789999843  1   1100           0 34455543     2347


Q ss_pred             EEEcccCCCCCceEEEEEEcCCC-C-----cccceeEEEEeec-------ceEEeC-CCceeEeCCCcEEEEEEeCCC-C
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAG-T-----RESTDAVLRVLVK-------PYIIRG-PKDTTVSAGSIIVFECSVGGD-A  146 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p  146 (216)
                      |.|.+++.+|+|.|.|.+.+... .     .......|.|...       |..... +....+..|+.+.|.|.+.+. |
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence            99999999999999999987531 1     1123456777652       322222 333345579999999999876 5


Q ss_pred             C-cEEEEeeCCc-cCCCCC---eeee-----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          147 V-LTVHWKRLGS-AMPEDR---MSVL-----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       147 ~-~~i~W~~~~~-~~~~~~---~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      . +.+.|++++. .+....   ....     ..+.|.|..... + |.|+|.+.|..+.......+.+
T Consensus       162 ~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          162 DVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            4 7899999987 453221   1111     113577776654 4 9999999999887544444444

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.85  E-value=8.7e-20  Score=147.93  Aligned_cols=196  Identities=15%  Similarity=0.182  Sum_probs=124.8

Q ss_pred             hhhceeeEEeeccceE----ecccceEEecC--CcEEEEeeCCCCCCCCeeEEeeC--CEEeccccCceEEEecCcEEEE
Q psy573           13 EEKKKLKIEMLREEFR----VQPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN--GHPIDFENSKRLRLVDGTNLAI   84 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~----~~~~~~~~~~G--~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~~~~l~i   84 (216)
                      +..+.|.|.+..+.+.    ..+....+.+|  +.++|.|.+ .+ |.+.+.|+++  +..+..... .........|.|
T Consensus       111 ~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~-~~-p~~~v~w~~~~~~~~~~~~~~-~~~~~~~~~l~i  187 (772)
T 3v2a_R          111 ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPDGN-RISWDSKKGFTI  187 (772)
T ss_dssp             ---------------------CEEEEEEESSCCCEEEECCCC-SC-SSCCEEEEEETTTEEECCCSS-SCEEETTTEEEE
T ss_pred             EEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccC-CC-CCcEEEEEecCCCccccCCCc-eeecCCCCCeEe
Confidence            3445555553322222    23456778889  889999998 33 7789999997  665533222 223345678999


Q ss_pred             cccCCCCCceEEEEEEcCCCCcccceeEEEEee--cceEEeCC-CceeEeCCCcEEEEEEeCC--CCCcEEEEeeCCccC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV--KPYIIRGP-KDTTVSAGSIIVFECSVGG--DAVLTVHWKRLGSAM  159 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~-~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~~~~  159 (216)
                      .+++.+|+|.|+|.+.+......+....+.+..  .+.+...+ ....+.+|+.+.|.|.+.+  .+.+.+.|++++..+
T Consensus       188 ~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~  267 (772)
T 3v2a_R          188 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH  267 (772)
T ss_dssp             EGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC----
T ss_pred             cCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccC
Confidence            999999999999999975443333333444433  23333333 3468999999999999976  456789999998765


Q ss_pred             CCCCee------------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceee
Q psy573          160 PEDRMS------------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       160 ~~~~~~------------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      ......            ......|.|.++..+|+|.|+|.+.|..+.....+.|.|..+|.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~  331 (772)
T 3v2a_R          268 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA  331 (772)
T ss_dssp             ----CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC--
T ss_pred             CCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeE
Confidence            432111            1123579999999999999999999999988888999998877543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=130.62  Aligned_cols=181  Identities=16%  Similarity=0.230  Sum_probs=127.8

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.+ ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++...   ..+.|.|.++..+|+|.|.|.+
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            45666 57777899999999999998 7888899999999998865443444443   2468999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeC----CCCCc--EEEEeeCCccCCCCCe-eee---cC
Q psy573          100 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVG----GDAVL--TVHWKRLGSAMPEDRM-SVL---PS  169 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~i~W~~~~~~~~~~~~-~~~---~~  169 (216)
                      .|..+.. ...+.+.+...|......  .....+..+.|.|...    +.|..  .+.|.+++...-.... ...   ..
T Consensus        96 ~n~~g~~-~~~~~l~v~~~P~~p~~~--~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~  172 (215)
T 3mtr_A           96 VNRIGQE-SLEFILVQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME  172 (215)
T ss_dssp             ECSSCEE-EEEEEEEECCCCCCCEEE--EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred             EECCCce-EEEEEEEECCCCCCCcce--EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence            9988875 455677776655321111  1223456788888742    22333  3778877653211100 000   12


Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ..+.|.++...+.|.|+|.+.|..|....+..+.+..+|
T Consensus       173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             TEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             ccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            679999999999999999999999987666666666555

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.85  E-value=9.2e-21  Score=134.41  Aligned_cols=173  Identities=13%  Similarity=0.208  Sum_probs=113.6

Q ss_pred             ccceEEecCCcEEEEeeCCCC--CCCCeeEEeeCC--E---Ee-c-----------cccCceEEEec-----CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI-D-----------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~--~---~~-~-----------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      +..+.+.+|++++|.|.+ .+  .+...+.||+..  .   .+ .           ....+++.+..     ..+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAA-SGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             ECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEe-eCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            456789999999999987 33  235689999842  1   11 0           01223444432     23599999


Q ss_pred             cCCCCCceEEEEEEcCC---CCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeCCc
Q psy573           87 SRKTDDGRYQCVVKNVA---GTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRLGS  157 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~  157 (216)
                      ++.+|+|.|.|.+.+..   .........|.|.    .+|.+........+..|+.+.|.|.+.+ .|.+ .+.|++++.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            99999999999998752   1112333566665    4555554344445667999999999987 5656 899999886


Q ss_pred             cCCCC---C----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          158 AMPED---R----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       158 ~~~~~---~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .....   .    ......+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            43110   0    111222568899999999 99999999999887777666654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.85  E-value=8.6e-20  Score=124.46  Aligned_cols=152  Identities=15%  Similarity=0.193  Sum_probs=108.0

Q ss_pred             eEEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEE-EecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           34 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLR-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      +.+.+|++++|.|.+  +.|.+  .+.|++.+..+     ++.. ...+..|.|.+++.+|+|.|.|.+.+..+. ....
T Consensus        17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~   88 (210)
T 1gsm_A           17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHT   88 (210)
T ss_dssp             EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred             eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEE
Confidence            589999999999997  55666  99999854322     2222 233467999999999999999999987655 3567


Q ss_pred             eEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC----cEEEEeeCCccCCCCCe---ee------e---cC----
Q psy573          111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV----LTVHWKRLGSAMPEDRM---SV------L---PS----  169 (216)
Q Consensus       111 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~---~~------~---~~----  169 (216)
                      +.|.|..+|........ ....|+.. |.|.+.+. |.    ++|.|+|++..+.....   ..      .   ..    
T Consensus        89 ~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (210)
T 1gsm_A           89 VQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFR  166 (210)
T ss_dssp             EEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEE
T ss_pred             EEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEE
Confidence            88999988855432222 56677888 99999875 53    58999999998854321   11      0   11    


Q ss_pred             --CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          170 --RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       170 --~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                        +++.+.....++.+.|+|.|.+..-.
T Consensus       167 vts~~~~~~~~~D~~~~~tC~a~~~L~~  194 (210)
T 1gsm_A          167 VTERWRLPPLGTPVPPALYCQATMRLPG  194 (210)
T ss_dssp             EEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred             EEEEEeecCCcccCCceEEEEEEeeCCC
Confidence              12333355666678999999987644

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.84  E-value=1.3e-21  Score=134.80  Aligned_cols=157  Identities=14%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             EecCCcEEEEeeCCCCCC----CCeeEEeeCCEEecccc--------CceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           36 VAAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFEN--------SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +.+|+.++|.|.+ .+.+    ...+.|++++..+....        .+.+  ...+.|.|.+++.+|+|.|+|.+.+..
T Consensus        15 v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~~~~   91 (207)
T 2vol_A           15 LTITLTPKVTCVV-VDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTF--RSVSELPIMHQDWLNGKEFKCRVNSAA   91 (207)
T ss_dssp             HSTTSCCEEEEEE-EEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEE--EEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             hccCCceEEEEEE-eCcccCCCceEEEEEECCccccccccCCCcCcCCCcE--EEEEEEEEehhHcCCCCEEEEEEEccC
Confidence            7899999999998 4442    35899999997663210        1111  112469999999999999999999876


Q ss_pred             CCcc-cceeEE--EEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCCCe---eeecCCe----
Q psy573          104 GTRE-STDAVL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRM---SVLPSRS----  171 (216)
Q Consensus       104 ~~~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~---~~~~~~~----  171 (216)
                      +... ...+.+  .+..+|.+...+.......|+.+.|.|.+.+. |. +.+.|++++..+.....   ....+++    
T Consensus        92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~  171 (207)
T 2vol_A           92 FPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVY  171 (207)
T ss_dssp             CSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEE
T ss_pred             CCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEE
Confidence            6421 122222  34556766544443333468999999999875 44 38999999987643211   1122332    


Q ss_pred             --EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          172 --LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       172 --l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                        |.+.....+|.|.|+|.|.|....
T Consensus       172 s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          172 SKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EEEEECHHHcCCCCEEEEEEECCCCC
Confidence              455555556899999999998754

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.84  E-value=3e-20  Score=132.94  Aligned_cols=169  Identities=17%  Similarity=0.234  Sum_probs=112.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ecc-c---------cCc-eEEEec----CcEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---IDF-E---------NSK-RLRLVD----GTNLAI   84 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~~-~---------~~~-~~~~~~----~~~l~i   84 (216)
                      ..+...|..+.+.+|++++|.|.+ .+ +.+.+.||+.  +..   +.. .         ... ++....    +.+|.|
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            455666777899999999999997 33 6789999982  111   000 0         001 444432    458999


Q ss_pred             cccCCCCCceEEEEEEcCCC---CcccceeEEEEee------cceEEe-CCCceeEeCCCcEEEEEEeCC-CCCc-EEEE
Q psy573           85 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYIIR-GPKDTTVSAGSIIVFECSVGG-DAVL-TVHW  152 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W  152 (216)
                      .+++.+|+|.|.|.+.+...   ........|.|..      +|.+.. .+....+..|+.+.|.|.+.+ .|.+ .+.|
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  185 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  185 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEE
Confidence            99999999999999986431   1222344666654      454433 233334456899999999987 5656 8999


Q ss_pred             eeCCccCCCCCee---------------eecCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          153 KRLGSAMPEDRMS---------------VLPSRSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       153 ~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      ++++..+......               ......|.|.....+| +|.|+|.+.|....
T Consensus       186 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            9999877543211               1111346777776667 99999999988664

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.84  E-value=3.2e-20  Score=133.46  Aligned_cols=171  Identities=13%  Similarity=0.219  Sum_probs=114.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---ec------------cccCceEEEec----CcEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID------------FENSKRLRLVD----GTNLA   83 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~------------~~~~~~~~~~~----~~~l~   83 (216)
                      +.+...|..+.+.+|+.++|.|.+ .+.+.+.+.||++.  ..   +.            .....++....    +.+|.
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            456667778899999999999998 56677899999863  11   10            01234555442    24799


Q ss_pred             EcccCCCCCceEEEEEEcCCC----C-cccceeEEEEee------cceEEeC-CCceeEeCCCcEEEEEEeCCC-CC-cE
Q psy573           84 IQDSRKTDDGRYQCVVKNVAG----T-RESTDAVLRVLV------KPYIIRG-PKDTTVSAGSIIVFECSVGGD-AV-LT  149 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~  149 (216)
                      |.+++.+|+|.|+|.+.+..+    . .......|.|..      +|.+... +....+..|+.+.|.|.+.+. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998421    1 112234566654      4544432 222334468999999999876 43 69


Q ss_pred             EEEeeCCccCCCCCeee---------ecC------CeEEEecCCCCC-CeEEEEEEEcCCcce
Q psy573          150 VHWKRLGSAMPEDRMSV---------LPS------RSLQLSDVRLED-GGEYVCEAENAVGKI  196 (216)
Q Consensus       150 i~W~~~~~~~~~~~~~~---------~~~------~~l~i~~~~~~d-~g~y~C~~~n~~~~~  196 (216)
                      +.|++++..+.......         ..+      +.|.|......| .|.|+|.+.|.....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            99999998775432110         012      236666666654 789999999987653

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.84  E-value=7.1e-20  Score=130.30  Aligned_cols=170  Identities=15%  Similarity=0.206  Sum_probs=113.0

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec---------------cccCceEEEec-----CcEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAI   84 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i   84 (216)
                      ..|..+.+.+|++++|.|.+ .+.+  .+.+.||++.  ....               .....++.+..     +.+|.|
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   89 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL   89 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ECCCCEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence            34567789999999999998 4444  5789999863  2110               01134555432     347999


Q ss_pred             cccCCCCCceEEEEEEcCCCC--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLG  156 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~  156 (216)
                      .+++.+|+|.|.|.+.+..+.  .......|.|..    +|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g  169 (261)
T 2xqy_G           90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  169 (261)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence            999999999999999985421  112335677764    3554432322346679999999999875 666 99999998


Q ss_pred             ccCCC---CCe----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          157 SAMPE---DRM----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       157 ~~~~~---~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ..+..   ...    .....+.|.|.....+| |.|+|.|.|.........
T Consensus       170 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~  219 (261)
T 2xqy_G          170 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK  219 (261)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence            75421   111    11123568888888878 999999999776644443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.84  E-value=9.7e-20  Score=126.06  Aligned_cols=168  Identities=15%  Similarity=0.222  Sum_probs=108.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEe---c-----------cccCceEEEec-----CcEEEEccc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPI---D-----------FENSKRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~---~-----------~~~~~~~~~~~-----~~~l~i~~~   87 (216)
                      |....+.+|+.++|.|.+ .+.+  .+.+.||++.  ...   .           ....+++....     +.+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             ECCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             CCCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            556788999999999998 4433  5789999852  211   0           01234555432     238999999


Q ss_pred             CCCCCceEEEEEEcCCCC--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccC
Q psy573           88 RKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAM  159 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  159 (216)
                      +.+|+|.|.|.+.+..+.  .......|.|..    +|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            999999999999876421  122345677763    3544433323345789999999999876 777 99999988654


Q ss_pred             CCCCe-eeecCCeE----EEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          160 PEDRM-SVLPSRSL----QLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       160 ~~~~~-~~~~~~~l----~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ..... .....+.+    .+.....+| |.|+|.+.|..+......
T Consensus       166 ~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          166 DVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             SCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            32110 01111221    122444456 999999999988755443

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.84  E-value=3.5e-20  Score=131.47  Aligned_cols=169  Identities=14%  Similarity=0.255  Sum_probs=98.2

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec---------------cccCceEEEec-----CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      +..+.+.+|++++|.|.+ .+.+  .+.+.||+..  ....               ....+++....     ..+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAA-SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             ECCEEECTTCEEEEEEEE-ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             cCCEEEcCCCcEEEEEEe-ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            445689999999999997 4443  5789999853  1110               11234555432     24799999


Q ss_pred             cCCCCCceEEEEEEcCCC----------C--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-
Q psy573           87 SRKTDDGRYQCVVKNVAG----------T--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-  148 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  148 (216)
                      ++.+|+|.|.|.+.+..+          .  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ 
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence            999999999999997653          1  112335677764    4555443333346679999999999875 766 


Q ss_pred             EEEEeeCCccCCCCC--eeeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          149 TVHWKRLGSAMPEDR--MSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       149 ~i~W~~~~~~~~~~~--~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .+.|++++..+....  .....+      +.|.|.+...+| |.|+|.+.|..........
T Consensus       166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~  225 (257)
T 3bn9_D          166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  225 (257)
T ss_dssp             EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEE
T ss_pred             EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEE
Confidence            899999987542110  001111      346677777667 9999999997665444333

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.83  E-value=7.2e-20  Score=140.30  Aligned_cols=172  Identities=13%  Similarity=0.249  Sum_probs=117.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CE---Eec------------cccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PID------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~---~~~------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .+..+.+.+|+.++|.|.+ .+.+  .+.+.||++  +.   .+.            ....+++....     ...|.|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQA-SGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (457)
T ss_dssp             ECCCEEECTTCCEEECEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCceEEcCCCCEEEEEEe-cCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence            3456789999999999998 4544  678999984  22   110            01234555432     2479999


Q ss_pred             ccCCCCCceEEEEEEcCCC---------C--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CC-c
Q psy573           86 DSRKTDDGRYQCVVKNVAG---------T--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-L  148 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~  148 (216)
                      +++.+|+|.|+|.+.+..+         .  .......|.|..    +|.+...+....+.+|+.+.|.|.+.+. |. +
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  164 (457)
T 1hzh_H           85 SLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  164 (457)
T ss_dssp             SCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred             CCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCe
Confidence            9999999999999988754         1  122345677754    4555443434456789999999999876 64 7


Q ss_pred             EEEEeeCCccCCCCCee--eec------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          149 TVHWKRLGSAMPEDRMS--VLP------SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       149 ~i~W~~~~~~~~~~~~~--~~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .+.|++++..+......  ...      .+.|.|.++..+| |.|+|.+.|..+.......+.
T Consensus       165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~  226 (457)
T 1hzh_H          165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAE  226 (457)
T ss_dssp             EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEec
Confidence            99999998654311110  011      1368899999889 999999999887755554444

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.83  E-value=5.6e-20  Score=144.84  Aligned_cols=162  Identities=20%  Similarity=0.325  Sum_probs=115.9

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc----------ccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ....+.+|++++|.|.+..+.|.+.+.||+++..+..          ....+.....+++|.|.+++.+|+|.|+|.+.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            3467899999999998755678889999998652210          113345556667899999999999999999998


Q ss_pred             CCCCcccceeEEEEeecc---eEEeCCCceeEeCCCc-EEEEEEeCC-CCCcEEEEeeCCccCCCC--Ceeee-------
Q psy573          102 VAGTRESTDAVLRVLVKP---YIIRGPKDTTVSAGSI-IVFECSVGG-DAVLTVHWKRLGSAMPED--RMSVL-------  167 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~i~W~~~~~~~~~~--~~~~~-------  167 (216)
                      ..+......+.|.|..+|   .+..  ....+..+.. +.|.|.+.+ .|.+.+.|++++..+...  .....       
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence            877654556778886643   3322  2233555554 466999987 589999999999877532  21110       


Q ss_pred             ------cCCeEEEecCCCC-CCeEEEEEEEcCCcc
Q psy573          168 ------PSRSLQLSDVRLE-DGGEYVCEAENAVGK  195 (216)
Q Consensus       168 ------~~~~l~i~~~~~~-d~g~y~C~~~n~~~~  195 (216)
                            ..++|.|..++.+ +.|.|+|.+.|..+.
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                  1145888888844 488999999998654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.83  E-value=1.2e-19  Score=128.62  Aligned_cols=167  Identities=15%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ecc----------ccCc-eEEEecCcE--EEEcccCC
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---IDF----------ENSK-RLRLVDGTN--LAIQDSRK   89 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~~----------~~~~-~~~~~~~~~--l~i~~~~~   89 (216)
                      ...|..+.+.+|+.++|.|.+ .+.+.+.+.||+.  +..   +..          ...+ ++....+..  |.|.+++.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~   83 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred             EeCCCeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence            345667889999999999987 5667789999982  111   100          0112 444443322  99999999


Q ss_pred             CCCceEEEEEEcCCC-----CcccceeEEEEe------ecceEEeC-CCceeEeCCCcEEEEEEeCC-CCCc-EEEEeeC
Q psy573           90 TDDGRYQCVVKNVAG-----TRESTDAVLRVL------VKPYIIRG-PKDTTVSAGSIIVFECSVGG-DAVL-TVHWKRL  155 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~-----~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~  155 (216)
                      +|+|.|+|.+.+..+     ........|.|.      .+|.+... +....+..|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~  163 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  163 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEEC
Confidence            999999999986543     111223455554      34444332 22223335689999999987 5655 8999999


Q ss_pred             CccCCCCCee---------------eecCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573          156 GSAMPEDRMS---------------VLPSRSLQLSDVRLED-GGEYVCEAENAVGK  195 (216)
Q Consensus       156 ~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~~  195 (216)
                      +..+......               ....+.|.|.....+| .|.|+|.|.|....
T Consensus       164 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          164 GKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             TEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            8876542211               1111357777776666 77999999987543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.82  E-value=7.2e-21  Score=139.58  Aligned_cols=161  Identities=16%  Similarity=0.280  Sum_probs=106.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCC---eeEEeeCC-EEecccc-------CceEEEecCcEEEEcccCCCCCceEEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNG-HPIDFEN-------SKRLRLVDGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~---~~~W~~~~-~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      .|....+.+|+.++|.|.+....|.+   .+.||+++ ..+....       .+.+.  ..+.|.|.+++.+|+|.|+|.
T Consensus       119 ~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--~~~~L~I~~~~~~D~G~Y~C~  196 (323)
T 2wqr_A          119 RPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--VTSTLPVGTRDWIEGETYQCR  196 (323)
T ss_dssp             CCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--EEEEEECCHHHHHTTCCEEEE
T ss_pred             CCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE--EEEEEEECHHHccCCCCEEEE
Confidence            34444577899999999973334555   89999975 3332110       11111  234699999999999999999


Q ss_pred             EEcCCCCcccceeEEEE------eecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCCCeee----
Q psy573           99 VKNVAGTRESTDAVLRV------LVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMPEDRMSV----  166 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~----  166 (216)
                      +.+.....   ...+.+      ..+|.+...+.......|+.+.|.|.+.+. |.+ .+.|++++..+.......    
T Consensus       197 a~n~~~~~---~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  273 (323)
T 2wqr_A          197 VTHPHLPR---ALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPR  273 (323)
T ss_dssp             EECTTSSS---CEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCE
T ss_pred             EECCCCCC---CeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcc
Confidence            99875322   223333      245555433222222239999999999874 433 799999998775432211    


Q ss_pred             -------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          167 -------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       167 -------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                             ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       274 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          274 KTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             ECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence                   11246889889899999999999998876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.82  E-value=1.4e-19  Score=138.14  Aligned_cols=171  Identities=13%  Similarity=0.208  Sum_probs=116.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EEec---------------cccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .|..+.+.+|+.++|.|.+ .+.+  .+.+.||++.  ....               ....+++....     ..+|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCAT-SGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (444)
T ss_dssp             EECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCeEEcCCCCEEEEEEc-CCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence            3456789999999999998 4432  5689999852  2210               01234555432     3479999


Q ss_pred             ccCCCCCceEEEEEEcCCCC--cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCc
Q psy573           86 DSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGS  157 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~  157 (216)
                      +++.+|+|.|.|.+.+..+.  .......|.|..    +|.+...+....+.+|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  164 (444)
T 1igt_B           85 RLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  164 (444)
T ss_dssp             SCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence            99999999999999986543  122345677763    4544433333345789999999999875 766 999999887


Q ss_pred             cCCC---CCe----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          158 AMPE---DRM----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       158 ~~~~---~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      .+..   ...    .....+.|.|.++..+| |.|+|.+.|..+.......+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i  215 (444)
T 1igt_B          165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  215 (444)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEEC
T ss_pred             CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEe
Confidence            5321   110    11122468899999889 99999999999885544444

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.81  E-value=8.7e-21  Score=130.59  Aligned_cols=169  Identities=15%  Similarity=0.228  Sum_probs=100.5

Q ss_pred             cceEecccceEE--ecCCcEEEEeeCCCCCC----CCeeEEeeCCEEeccccCceEEEecCcEEEE------cccCCCCC
Q psy573           25 EEFRVQPKSQRV--AAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFENSKRLRLVDGTNLAI------QDSRKTDD   92 (216)
Q Consensus        25 ~~~~~~~~~~~~--~~G~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i------~~~~~~d~   92 (216)
                      |.+.+.+.+..+  .+|+.++|.|.+ .+.+    ...+.||+++..+............++.+.+      ......|+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~-~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEE-EEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEE-ecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCC
Confidence            334444444333  699999999998 4433    3599999999876422111111223333333      23334459


Q ss_pred             ceEEEEEEcCCCCcccceeEE----EEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCCC---
Q psy573           93 GRYQCVVKNVAGTRESTDAVL----RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR---  163 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~---  163 (216)
                      |.|+|.+.+..+.. .....+    .+..+|.+...+.......|..+.|.|.+.+. |. +.+.|++++..+....   
T Consensus        81 g~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  159 (207)
T 1l6x_A           81 KEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP  159 (207)
T ss_dssp             CCEEEEEECTTSSS-CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             ceEEEEEEcCcCCc-ceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccC
Confidence            99999999876543 111122    23455665443333222345569999999885 44 4899999998765321   


Q ss_pred             eeeecCCe------EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          164 MSVLPSRS------LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       164 ~~~~~~~~------l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .....+++      |.+.....+|.|.|+|.|.|....
T Consensus       160 ~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          160 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            11122333      344444445799999999998654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.81  E-value=1.7e-20  Score=143.23  Aligned_cols=177  Identities=16%  Similarity=0.213  Sum_probs=115.1

Q ss_pred             ceeeEEe---eccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccC------ceEEEecCcEEEEc
Q psy573           16 KKLKIEM---LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENS------KRLRLVDGTNLAIQ   85 (216)
Q Consensus        16 ~~l~v~~---~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~------~~~~~~~~~~l~i~   85 (216)
                      +.|.|..   .+|.+...+....+.+|+.++|.|.+....|.+ .+.|++++..+.....      +.+..  .+.|.|.
T Consensus       112 ~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~  189 (444)
T 1igt_B          112 TTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVT  189 (444)
T ss_dssp             EEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEEC
T ss_pred             EEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEE--EEEEEEc
Confidence            4555543   123343333333357999999999983334665 9999998875311111      11111  2468999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEE------------------eecceE-EeCCCcee-EeCCCcEEEEEEeCCC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV------------------LVKPYI-IRGPKDTT-VSAGSIIVFECSVGGD  145 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~  145 (216)
                      ++..+| |.|.|.+.+..+... ....+.+                  ..+|.+ ...+.... +..|+.+.|.|.+.+.
T Consensus       190 ~~~~~d-g~Y~C~a~n~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~  267 (444)
T 1igt_B          190 SSTWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDV  267 (444)
T ss_dssp             STTTTT-SCCEEEEEETTTTEE-EEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEE
T ss_pred             hhhcCC-CeEEEEEEeCCCCcc-eEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeec
Confidence            999899 999999999876531 1112211                  124554 33333323 5789999999999887


Q ss_pred             C----CcEEEEeeCCccCCCCCe---ee------ecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          146 A----VLTVHWKRLGSAMPEDRM---SV------LPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       146 p----~~~i~W~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      +    .+.+.|++++..+.....   ..      ...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            3    368999999987643211   11      122479999999999999999999998875

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=128.59  Aligned_cols=165  Identities=13%  Similarity=0.181  Sum_probs=102.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec----CcEEEEcccCCCCCceEEEEEEcC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +........+.+|+.+.|.|.+ .+.    +.|++++..+.    .+.....    .+.|.|.+++.+|+|.|+|.+.+.
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   73 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSG-SAP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS   73 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEE-SSC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-
T ss_pred             ecCCCCeEEEeCCCcEEEEEec-cce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEccc
Confidence            3334455778999999999998 442    99999988762    2222222    247999999999999999999987


Q ss_pred             CCCccc--ceeEEEEeecceEEeCCC-c---eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEec
Q psy573          103 AGTRES--TDAVLRVLVKPYIIRGPK-D---TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD  176 (216)
Q Consensus       103 ~~~~~~--~~~~l~v~~~p~~~~~~~-~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~  176 (216)
                      .+....  ..+.+.+..+........ .   ..+.+|+.+.|.|.+. .|.+.+.|++++....... .......+.   
T Consensus        74 ~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~-~~~~~~~~~---  148 (289)
T 3mjg_X           74 RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV-PYDHQRGFS---  148 (289)
T ss_dssp             -----CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC-CEETTTEEE---
T ss_pred             CCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce-eecCCcCee---
Confidence            754222  233444432222111111 1   4688999999999998 6778888888653222211 111112222   


Q ss_pred             CCCCCCeEEEEEEEcCCcc-eEEEEEEEEEe
Q psy573          177 VRLEDGGEYVCEAENAVGK-ISASATLTVQS  206 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~  206 (216)
                       ...|+|.|+|.+.|..+. .+..+.|.+..
T Consensus       149 -~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~  178 (289)
T 3mjg_X          149 -GIFEDRSYICKTTIGDREVDSDAYYVYRLQ  178 (289)
T ss_dssp             -ECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred             -eeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence             357999999999987665 33345566654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.81  E-value=9.4e-19  Score=122.96  Aligned_cols=167  Identities=14%  Similarity=0.204  Sum_probs=108.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---ec----------cccCceEEEec----CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID----------FENSKRLRLVD----GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~----------~~~~~~~~~~~----~~~l~i~~~   87 (216)
                      +...|..+.+.+|+.++|.|.+ . .+.+.+.||++.  ..   +.          .....++.+..    +.+|.|.++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   79 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELA   79 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSC
T ss_pred             cccCCCeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecC
Confidence            3456777899999999999997 3 357899999853  11   10          01133444432    247999999


Q ss_pred             CCCCCceEEEEEEcCCC----CcccceeEEEEee------cceEEe-CCCceeEeCCCcEEEEEEeCCC-CCc-EEEEee
Q psy573           88 RKTDDGRYQCVVKNVAG----TRESTDAVLRVLV------KPYIIR-GPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKR  154 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~  154 (216)
                      +.+|+|.|.|.+.+..+    ........|.|..      +|.+.. .+....+..|+.+.|.|.+.+. |.+ .+.|++
T Consensus        80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  159 (238)
T 1bec_A           80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  159 (238)
T ss_dssp             CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred             CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence            99999999999997632    1112234566654      455543 3344456679999999999876 644 899999


Q ss_pred             CCccCCCCCe-----eeecCCeEE------EecCCCC-CCeEEEEEEEcCCcc
Q psy573          155 LGSAMPEDRM-----SVLPSRSLQ------LSDVRLE-DGGEYVCEAENAVGK  195 (216)
Q Consensus       155 ~~~~~~~~~~-----~~~~~~~l~------i~~~~~~-d~g~y~C~~~n~~~~  195 (216)
                      ++..+.....     ....++++.      |...... +.|.|+|.+.|....
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            9987654321     112233333      2222222 367999999997544

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.81  E-value=8.6e-21  Score=133.33  Aligned_cols=170  Identities=14%  Similarity=0.194  Sum_probs=106.7

Q ss_pred             cceEecccceE--EecCCcEEEEeeCCCCC---CCC-eeEEeeCCEEeccccCce-EE-----EecCcEEEEcccCCCCC
Q psy573           25 EEFRVQPKSQR--VAAGDTALLECGPPRGH---PEP-TLVWKKNGHPIDFENSKR-LR-----LVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        25 ~~~~~~~~~~~--~~~G~~~~l~C~~~~~~---~~~-~~~W~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~   92 (216)
                      |.+.+.+....  +.+|+.++|.|.+ .+.   |.+ .+.||+++..+....... ..     ......|.|.+++.+|+
T Consensus        16 P~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           16 SSVFIFPPKTKDVLGGGLTPKVTCVV-VDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             -CEEEECCCHHHHTTSSSCCEEEEEE-EEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CEEEEECCChHHhcccCCcEEEEEEE-ecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            44444444433  6799999999998 443   655 899999886653111000 00     01124699999999999


Q ss_pred             ceEEEEEEcCCCCcc-cceeEE--EEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCCC---e
Q psy573           93 GRYQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR---M  164 (216)
Q Consensus        93 g~y~C~~~~~~~~~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~---~  164 (216)
                      |.|+|.+.+..+... ...+.+  .+..+|.+...+.......|+.+.|.|.+.+. |. ..+.|++++..+....   .
T Consensus        95 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  174 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP  174 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC
T ss_pred             CeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCc
Confidence            999999998766431 112211  23456666544443333457889999999874 44 4899999998775321   1


Q ss_pred             eeecCCe------EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          165 SVLPSRS------LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       165 ~~~~~~~------l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ....+++      |.+.....+|.|.|+|.|.|....
T Consensus       175 ~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            1123333      334444345699999999998765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=2.3e-19  Score=125.45  Aligned_cols=166  Identities=15%  Similarity=0.185  Sum_probs=108.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--E---Eecc----------c-cCceEEEec-----CcEEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PIDF----------E-NSKRLRLVD-----GTNLA   83 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~---~~~~----------~-~~~~~~~~~-----~~~l~   83 (216)
                      +...|..+.+.+|++++|.|.+ .+.  +...+.||+..  .   .+..          . ..+++....     +.+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEE
Confidence            4456777899999999999998 442  45689999842  1   1100          0 345665542     23799


Q ss_pred             EcccCCCCCceEEEEEEcC--CC-CcccceeEEEEee---------cceEE-eCCCceeEeCCCcEEEEEEeCCC-CC-c
Q psy573           84 IQDSRKTDDGRYQCVVKNV--AG-TRESTDAVLRVLV---------KPYII-RGPKDTTVSAGSIIVFECSVGGD-AV-L  148 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~--~~-~~~~~~~~l~v~~---------~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-p~-~  148 (216)
                      |.+++.+|+|.|.|.+.+.  .. ........|.|..         +|... ..+....+..|+.+.|.|.+.+. |. +
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence            9999999999999999874  11 1122345677751         23211 11333344568899999999876 64 5


Q ss_pred             EEEEee-CCccCCCCC---eee-----ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          149 TVHWKR-LGSAMPEDR---MSV-----LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       149 ~i~W~~-~~~~~~~~~---~~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+.|++ ++..+....   ...     ...+.|.|..... + |.|+|.+.|..+.
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            899999 776554221   111     1123577777765 4 8999999998775

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.80  E-value=4.5e-18  Score=130.99  Aligned_cols=166  Identities=16%  Similarity=0.264  Sum_probs=111.4

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--EE---ec------------cccCceEEEec-----CcEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID------------FENSKRLRLVD-----GTNLA   83 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~~---~~------------~~~~~~~~~~~-----~~~l~   83 (216)
                      ...|..+.+.+|+.++|.|.+ .+.+  ...+.||+..  ..   +.            ....+++....     ..+|.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEe-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            345677899999999999998 4433  5689999852  11   10            01134454432     24799


Q ss_pred             EcccCCCCCceEEEEEEcCCCC-----cccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CC-c-EEE
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGT-----RESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-L-TVH  151 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~i~  151 (216)
                      |.+++.+|+|.|.|.+.+..+.     .......|.|..    +|.+...+. ..+.+|+.+.|.|.+.+. |. + .+.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEE
Confidence            9999999999999999986541     122345666653    344443322 223689999999999887 55 4 899


Q ss_pred             EeeCCccCCCCC---------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          152 WKRLGSAMPEDR---------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       152 W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |++++.......         ......+.|.|..+..+|.|.|+|.+.|..+.
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  215 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  215 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC
Confidence            999875321110         01111235788888889999999999998874

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.80  E-value=1.5e-20  Score=137.93  Aligned_cols=172  Identities=14%  Similarity=0.169  Sum_probs=107.6

Q ss_pred             ccceEecccceEEecC--CcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCce-EEEecC-----cEEEEcccCCCCCce
Q psy573           24 REEFRVQPKSQRVAAG--DTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKR-LRLVDG-----TNLAIQDSRKTDDGR   94 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G--~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~~~-----~~l~i~~~~~~d~g~   94 (216)
                      +|.+.+.+.......|  +.+.|.|.+....| .+.+.|+++|..+....... ....++     ..|.|.+...+|+|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            4555544433323344  69999999833234 47999999999874322111 111111     257788887889999


Q ss_pred             EEEEEEcCCCCcccceeEEE---EeecceE-EeCCCceeEeCCCcEEEEEEeCCC-CCc---EEEEeeCCc-cCCCCCee
Q psy573           95 YQCVVKNVAGTRESTDAVLR---VLVKPYI-IRGPKDTTVSAGSIIVFECSVGGD-AVL---TVHWKRLGS-AMPEDRMS  165 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~---v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~i~W~~~~~-~~~~~~~~  165 (216)
                      |+|.+.+..+.. ...+.+.   +...|.+ ...+....+..|+.+.|.|.+.+. |.+   .+.|++++. .+......
T Consensus        87 Y~C~a~n~~~~~-~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~  165 (323)
T 2wqr_A           87 YTCQVTYQGHTF-EDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRK  165 (323)
T ss_dssp             EEEEEEETTEEE-EEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCE
T ss_pred             EEEEEEeCCCCc-ceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCC
Confidence            999999865432 1111110   1123433 334444567789999999999775 455   899999753 33221111


Q ss_pred             --------eecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          166 --------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       166 --------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                              ....+.|.|.++..+|+|.|+|.+.|..+..
T Consensus       166 ~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          166 EEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             CccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence                    1122469999999999999999999987543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.80  E-value=2.2e-20  Score=130.74  Aligned_cols=162  Identities=14%  Similarity=0.208  Sum_probs=106.4

Q ss_pred             ecccceEEecCCcEEEEeeCCCC-CCC--CeeEEeeCCEEe-ccccCceEEEec------CcEEEEcccCCCCCceEEEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG-HPE--PTLVWKKNGHPI-DFENSKRLRLVD------GTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~-~~~--~~~~W~~~~~~~-~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~   98 (216)
                      ..|....+.+|+.++|.|.+ .+ .|.  ..+.|+++|..+ ... ........      ...|.|.++..+|+|.|+|.
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~-~g~~P~~p~~v~W~~~g~~~~~~~-~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~   95 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLV-VNLPSDSSLSVTWTREKSGNLRPD-PMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCT   95 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEE-EEESCCTTCEEEEECSSSSCCCCC-CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             eCcChhhcccCCceEEEEEE-eCccCCCCeEEEEEcCCeeccccc-cccceECCCCcEEEEEEEEecchhccCCCEEEEE
Confidence            44555667899999999998 44 463  499999988766 211 11111111      23699999999999999999


Q ss_pred             EEcCCCCcccceeEEEEe------ecceEEeCCCceeEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe-----e
Q psy573           99 VKNVAGTRESTDAVLRVL------VKPYIIRGPKDTTVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM-----S  165 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~-----~  165 (216)
                      +.+..+..   ...+.+.      .+|.+...+.......+..+.|.|.+.+. | .+.+.|++++..+.....     .
T Consensus        96 ~~~~~~~~---~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  172 (231)
T 2w59_A           96 VQHEELPL---PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVL  172 (231)
T ss_dssp             EECTTCSS---CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCE
T ss_pred             EEcCCCCC---ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccc
Confidence            99876432   2333332      34555432222111234579999999885 4 368999999987754321     1


Q ss_pred             ee--------cC-------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          166 VL--------PS-------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       166 ~~--------~~-------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..        .+       +.|.|.....+|.|.|+|.|.|....
T Consensus       173 ~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          173 PEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             ECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            11        12       34677777777899999999998765

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.80  E-value=6.6e-19  Score=124.77  Aligned_cols=169  Identities=14%  Similarity=0.220  Sum_probs=111.3

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E--E-ecc----------ccCceEEEec----CcEEEEcc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H--P-IDF----------ENSKRLRLVD----GTNLAIQD   86 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~--~-~~~----------~~~~~~~~~~----~~~l~i~~   86 (216)
                      .+...|..+.+.+|+.++|.|.+ . .+.+.+.||+..  .  . +..          ....++....    +..|.|.+
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             cceEcCCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            45556777899999999999997 3 357899999853  1  1 100          1234555542    35799999


Q ss_pred             cCCCCCceEEEEEEcCCC--CcccceeEEEEee------cceEEeC-CCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeC
Q psy573           87 SRKTDDGRYQCVVKNVAG--TRESTDAVLRVLV------KPYIIRG-PKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRL  155 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~  155 (216)
                      ++.+|+|.|.|.+.+...  ........|.|..      +|.+... +....+..|+.+.|.|.+.+. |. +.+.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            999999999999987521  1112234566642      4555432 333344568999999999875 64 48999999


Q ss_pred             CccCCCCCeee---------ecC------CeEEEecCCCC-CCeEEEEEEEcCCcce
Q psy573          156 GSAMPEDRMSV---------LPS------RSLQLSDVRLE-DGGEYVCEAENAVGKI  196 (216)
Q Consensus       156 ~~~~~~~~~~~---------~~~------~~l~i~~~~~~-d~g~y~C~~~n~~~~~  196 (216)
                      +..+.......         ..+      +.|.|...... +.|.|+|.+.|.....
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            88765432110         112      23666665543 6789999999987543

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.80  E-value=1e-18  Score=122.18  Aligned_cols=173  Identities=13%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             ccceEEecCCcEEEEeeCCC-CCCCCeeEEeeCC--E---Ee------------ccccCceEEEecC-----cEEEEccc
Q psy573           31 PKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNG--H---PI------------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      +..+.+.+|++++|.|.+.. ......+.||+..  .   .+            .....+++....+     .+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            44578999999999998732 1234689999732  1   11            0112345554321     25999999


Q ss_pred             CCCCCceEEEEEEcCCC-------CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-C-CcEEEEee
Q psy573           88 RKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-A-VLTVHWKR  154 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~~  154 (216)
                      +.+|+|.|.|.+.+..+       ........|.|.    .+|.+........+..|+.+.|.|.+.+. | .+.+.|  
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--  164 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  164 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence            99999999999987531       111233456664    34455433333445689999999999774 4 356999  


Q ss_pred             CCccCCCCC----------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          155 LGSAMPEDR----------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       155 ~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ++..+....          ......+.|.|.....+| |.|+|.|.|..+.......|.+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          165 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            554443211          011112368888888889 999999999988777666665553

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.80  E-value=2.5e-19  Score=125.38  Aligned_cols=172  Identities=14%  Similarity=0.198  Sum_probs=106.1

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCee--EEeeCC-----EEe-c-------------cccCceEEEec-----CcEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTL--VWKKNG-----HPI-D-------------FENSKRLRLVD-----GTNL   82 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~--~W~~~~-----~~~-~-------------~~~~~~~~~~~-----~~~l   82 (216)
                      +..+.+.+|++++|.|.+ .+.  ....+  .||+..     ..+ .             ....+++....     ..+|
T Consensus         7 ~~~~~v~~G~~v~L~C~~-~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSF-SGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL   85 (232)
T ss_dssp             ECCSEECTTSCEEEEEEE-ESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred             CCCEEECCCCcEEEEEEE-eCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence            345678999999999987 332  22344  999842     111 0             11123554432     2369


Q ss_pred             EEcccCCCCCceEEEEEEcCCC-------CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cE
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LT  149 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~  149 (216)
                      .|.+++.+|+|.|.|.+.+..+       ........+.|.    .+|.+...+....+..|+.+.|.|.+.+.++  ..
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred             EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence            9999999999999999986521       112233456664    3455553333345567999999999977543  36


Q ss_pred             EEEeeCCccCCCC--------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          150 VHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       150 i~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +.|++++..+...        .......+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            8899988643211        0111112468888888888 9999999999887776666544

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.80  E-value=4.7e-19  Score=124.58  Aligned_cols=173  Identities=15%  Similarity=0.186  Sum_probs=110.1

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC----CCeeEEeeCC--E---Ee---c--------------cccCceEEEec-----
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG--H---PI---D--------------FENSKRLRLVD-----   78 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~----~~~~~W~~~~--~---~~---~--------------~~~~~~~~~~~-----   78 (216)
                      .+..+.+.+|++++|.|.+ .+.+    ...+.||+..  .   .+   .              ....+++....     
T Consensus         6 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAV-SGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EESCSEECTTSCEEEEEEE-ESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             cCCCEEEcCCCCEEEEEEE-cCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            3456789999999999997 3333    4589999842  1   11   0              01234454432     


Q ss_pred             CcEEEEcccCCCCCceEEEEEEcCCC------------CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEe
Q psy573           79 GTNLAIQDSRKTDDGRYQCVVKNVAG------------TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSV  142 (216)
Q Consensus        79 ~~~l~i~~~~~~d~g~y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~  142 (216)
                      ..+|.|.+++.+|+|.|.|.+.+..+            ........|.|.    .+|.+...+....+..|+.+.|.|.+
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  164 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEE
Confidence            23599999999999999999976421            011223355554    34555533344445679999999999


Q ss_pred             CCC-CCc-EEEEeeCCccCCCC--------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          143 GGD-AVL-TVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       143 ~~~-p~~-~i~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .+. |.+ .+.|++++..+...        .......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       165 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          165 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            774 433 58999988643211        1111112458888888888 9999999999887666655543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.80  E-value=6.4e-19  Score=124.49  Aligned_cols=176  Identities=15%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             ecccceEEecCCcEEEEeeCCC-CCCCCeeEEeeCC--E---Ee------------ccccCceEEEec-----CcEEEEc
Q psy573           29 VQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNG--H---PI------------DFENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~~-----~~~l~i~   85 (216)
                      ..+..+.+.+|++++|.|.+.. ..+...+.||+..  .   .+            .....+++....     ..+|.|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3556778999999999998732 1234689999742  1   11            011234554432     2369999


Q ss_pred             ccCCCCCceEEEEEEcCC---------------------CCcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEE
Q psy573           86 DSRKTDDGRYQCVVKNVA---------------------GTRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFEC  140 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C  140 (216)
                      +++.+|+|.|.|.+.+..                     .........|.|.    .+|.+...+....+..|+.+.|.|
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            999999999999998631                     1112233456665    345555333444456799999999


Q ss_pred             EeCCC-C-CcEEEEeeCCccCCCC--------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          141 SVGGD-A-VLTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       141 ~~~~~-p-~~~i~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .+.+. | .+.+.|.+++..+...        .......+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             EEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            99764 4 4579999988643211        1111112457788887778 99999999998877666665544

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=1.3e-18  Score=106.80  Aligned_cols=92  Identities=29%  Similarity=0.478  Sum_probs=77.7

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee---cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL---PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....   ....|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            46777788888999999999999999999999999999999886543 3322   1246999999999999999999999


Q ss_pred             CcceEEEEEEEEEecc
Q psy573          193 VGKISASATLTVQSKY  208 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p  208 (216)
                      .|....++.|.|.++|
T Consensus        92 ~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TEEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999998876

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.79  E-value=1.9e-19  Score=137.08  Aligned_cols=170  Identities=14%  Similarity=0.233  Sum_probs=114.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--EEec---------------cccCceEEEec-----CcEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~   85 (216)
                      .+..+.+.+|+.++|.|.+ .+.  +.+.+.||++.  ....               ....+++.+..     ...|.|.
T Consensus         5 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            5 ESGAELARPGASVKMSCKA-SGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             CCCCCEECTBCCEEECCEE-CSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             CCCCeEecCCCCEEEEEEc-cCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            3456789999999999998 443  35789999863  2210               01134555432     2479999


Q ss_pred             ccCCCCCceEEEEEEcCCCCcccceeEEEEee----cceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccC
Q psy573           86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAM  159 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  159 (216)
                      +++.+|+|.|.|.+.+..+.. .....|.|..    +|.+...+....+.+|+.+.|.|.+.+. |.+ .+.|++++...
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~  162 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  162 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCS
T ss_pred             CCChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCC
Confidence            999999999999998753322 3345666652    3444432333345789999999999876 666 99999998753


Q ss_pred             CC---CC----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          160 PE---DR----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       160 ~~---~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..   ..    ......+.|.|.++..+| |.|+|.+.|..+.......+
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~  211 (434)
T 1igy_B          163 GVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKI  211 (434)
T ss_dssp             SEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEEC
T ss_pred             CeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeec
Confidence            11   00    011112468899999888 99999999999875444333

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.79  E-value=2.3e-18  Score=132.63  Aligned_cols=184  Identities=16%  Similarity=0.238  Sum_probs=113.4

Q ss_pred             hhceeeEEee---ccceEecccceEEecCCcEEEEeeCCCCCCC-C-eeEEeeCCEEecccc--------CceEEEecCc
Q psy573           14 EKKKLKIEML---REEFRVQPKSQRVAAGDTALLECGPPRGHPE-P-TLVWKKNGHPIDFEN--------SKRLRLVDGT   80 (216)
Q Consensus        14 ~~~~l~v~~~---~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~-~~~W~~~~~~~~~~~--------~~~~~~~~~~   80 (216)
                      ..+.|.|...   +|.+...+. ..+.+|+.++|.|.+....|. + .+.|++++.......        .+.+..  .+
T Consensus       114 ~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~--~s  190 (475)
T 1iga_A          114 QGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT--SS  190 (475)
T ss_pred             CceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEE--EE
Confidence            3456666531   344433322 223689999999998333365 4 999999875321111        011111  13


Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEe------------------ecceE-EeCCCceeEeCCCcEEEEEE
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL------------------VKPYI-IRGPKDTTVSAGSIIVFECS  141 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~------------------~~p~~-~~~~~~~~~~~g~~~~l~C~  141 (216)
                      .|.|.+....|+|.|.|.+.+..+......+.+.|.                  .+|.+ ...+....+.+|+.+.|.|.
T Consensus       191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~  270 (475)
T 1iga_A          191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT  270 (475)
T ss_pred             EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence            588888888999999999998775322222332221                  23444 22233334578999999999


Q ss_pred             eCCCCC---cEEEEeeCCccCCCCC---e------eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          142 VGGDAV---LTVHWKRLGSAMPEDR---M------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       142 ~~~~p~---~~i~W~~~~~~~~~~~---~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      +.+.++   +.+.|  ++..+....   .      .....+.|.|.++..+|+|.|+|.+.|..+.......|
T Consensus       271 ~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v  341 (475)
T 1iga_A          271 LTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATL  341 (475)
T ss_pred             EEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEe
Confidence            987644   68999  433332110   0      01123469999999999999999999998875444444

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.77  E-value=5e-19  Score=135.64  Aligned_cols=180  Identities=17%  Similarity=0.230  Sum_probs=110.5

Q ss_pred             hceeeEEee---ccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecC------cEEEE
Q psy573           15 KKKLKIEML---REEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG------TNLAI   84 (216)
Q Consensus        15 ~~~l~v~~~---~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i   84 (216)
                      .+.|.|...   +|.+...+....+.+|+.++|.|.+....|. +.+.|++++..+........ ...+      +.|.|
T Consensus       120 ~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~s~L~i  198 (457)
T 1hzh_H          120 GTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTV  198 (457)
T ss_dssp             CEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEE-ECTTSCEEEEEEEEE
T ss_pred             cEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCce-ECCCCCEEEEEEEEe
Confidence            345666542   3444444444456899999999998333364 79999999864321100001 1111      36999


Q ss_pred             cccCCCCCceEEEEEEcCCCCcccceeEEEE-----------------eecceE-EeCCCcee-EeCCCcEEEEEEeCCC
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV-----------------LVKPYI-IRGPKDTT-VSAGSIIVFECSVGGD  145 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v-----------------~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~  145 (216)
                      .++..+| |.|+|.+.+..+.. .....+.+                 ..+|.+ ...+.... +.+|+.+.|.|.+.+.
T Consensus       199 ~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~  276 (457)
T 1hzh_H          199 PSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV  276 (457)
T ss_dssp             CSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECC
T ss_pred             cccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcc
Confidence            9999999 99999999865432 11122221                 123444 33333222 5689999999999887


Q ss_pred             CCc----EEEEeeCCccCCCCCe---eeecCCeEEEec---CCCCC---CeEEEEEEEcCCcceE
Q psy573          146 AVL----TVHWKRLGSAMPEDRM---SVLPSRSLQLSD---VRLED---GGEYVCEAENAVGKIS  197 (216)
Q Consensus       146 p~~----~i~W~~~~~~~~~~~~---~~~~~~~l~i~~---~~~~d---~g~y~C~~~n~~~~~~  197 (216)
                      +++    .+.|++++..+.....   ....++.+.+..   +...|   .|.|+|.|.|..+...
T Consensus       277 ~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~  341 (457)
T 1hzh_H          277 SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP  341 (457)
T ss_dssp             CTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSC
T ss_pred             cCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCc
Confidence            543    8999999987653321   112334444442   33455   9999999998766543

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=4.1e-18  Score=117.16  Aligned_cols=164  Identities=15%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-----cccCceEEEecC------cEEEEcccCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-----FENSKRLRLVDG------TNLAIQDSRKT   90 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-----~~~~~~~~~~~~------~~l~i~~~~~~   90 (216)
                      +...|..+.+.+|+.++|.|.+ .+.. ..+.||+..  .   .+.     ....+++....+      .+|.|.+++.+
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~-~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~   81 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNF-TTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE   81 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEE-SSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGG
T ss_pred             cEECCCeEEEccCCcEEEEEEE-eCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHH
Confidence            4556777899999999999998 3333 489999853  1   110     012344544422      47999999999


Q ss_pred             CCceEEEEEEcCCC---------C-cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCcc
Q psy573           91 DDGRYQCVVKNVAG---------T-RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSA  158 (216)
Q Consensus        91 d~g~y~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~  158 (216)
                      |+|.|.|.+.+..+         . .......|.|.........| ...+..+ .+.|.|.+.+. |. +.+.|+++ ..
T Consensus        82 D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~  158 (207)
T 1ypz_E           82 DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KK  158 (207)
T ss_dssp             GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SE
T ss_pred             HCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cc
Confidence            99999999987632         1 11233567776421111111 1111112 36899999765 44 69999999 65


Q ss_pred             CCCCC--eeeecCCeEEEecCCC-CCCeEEEEEEEcCCcc
Q psy573          159 MPEDR--MSVLPSRSLQLSDVRL-EDGGEYVCEAENAVGK  195 (216)
Q Consensus       159 ~~~~~--~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~~~  195 (216)
                      +....  .....++++.+..... ++.|.|+|.+.|..+.
T Consensus       159 l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          159 IVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             EEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             ccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            53221  1123445666654444 6789999999998764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.76  E-value=9.7e-18  Score=119.03  Aligned_cols=173  Identities=14%  Similarity=0.231  Sum_probs=107.2

Q ss_pred             cccceEEecCCcEEEEeeCCC-CCCCCeeEEeeCC--E---Ee------------ccccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNG--H---PI------------DFENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .+..+.+.+|++++|.|.+.. ......+.||+..  .   .+            .....+|+....     +.+|.|.+
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  108 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNS  108 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECC
Confidence            344578999999999998722 1234689999732  1   11            011234554432     22599999


Q ss_pred             cCCCCCceEEEEEEcCCC----------CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-C-CcEE
Q psy573           87 SRKTDDGRYQCVVKNVAG----------TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-A-VLTV  150 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~----------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i  150 (216)
                      ++.+|+|.|.|.+.+..+          ........|.|.    .+|.+........+.+|+.+.|.|.+.+. | .+.+
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v  188 (256)
T 3sob_H          109 LRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  188 (256)
T ss_dssp             CCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEE
Confidence            999999999999986431          112233456664    34445433333355689999999999764 4 4579


Q ss_pred             EEeeCCccCCCCC----------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          151 HWKRLGSAMPEDR----------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       151 ~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .|  ++..+....          ......+.|.|.....+| |.|+|.+.|..+.......|.+.
T Consensus       189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            99  444432210          011112368888888889 99999999998877666665544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.76  E-value=3.7e-19  Score=131.57  Aligned_cols=177  Identities=16%  Similarity=0.245  Sum_probs=107.5

Q ss_pred             hceeeEEe---eccceEecccceEEecCCcEEEEeeCCCCC-CC-CeeEEeeCCEEeccc-------cCceEEEecCcEE
Q psy573           15 KKKLKIEM---LREEFRVQPKSQRVAAGDTALLECGPPRGH-PE-PTLVWKKNGHPIDFE-------NSKRLRLVDGTNL   82 (216)
Q Consensus        15 ~~~l~v~~---~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~-~~~~W~~~~~~~~~~-------~~~~~~~~~~~~l   82 (216)
                      .+.|.|..   .+|.+...+....+.+|+.++|.|.+ .+. |. +.+.|++++..+...       ..+.+..  .+.|
T Consensus       108 ~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~--~s~L  184 (344)
T 1za6_B          108 GTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV-KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVV  184 (344)
T ss_dssp             CEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE-EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE--EEEE
T ss_pred             cEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE-eeEECCCeEEEEecCCccCceeECCCeECCCCCEEE--EEEE
Confidence            34566653   23444433333445799999999998 443 54 799999998753111       1111111  1368


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcc-cceeEE----------------------EEeecceEEeCCCceeEeCCCcEEEE
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRE-STDAVL----------------------RVLVKPYIIRGPKDTTVSAGSIIVFE  139 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l----------------------~v~~~p~~~~~~~~~~~~~g~~~~l~  139 (216)
                      .|.++..+| |.|+|.+.+..+... ...+.+                      .+..+|.+...+.......|..+.|.
T Consensus       185 ~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~  263 (344)
T 1za6_B          185 TVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLT  263 (344)
T ss_dssp             EEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEE
T ss_pred             EEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEE
Confidence            999988878 999999998765421 111110                      11345555443332223346679999


Q ss_pred             EEeCCC-C-CcEEEEeeCCccCCCCC---eeeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          140 CSVGGD-A-VLTVHWKRLGSAMPEDR---MSVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       140 C~~~~~-p-~~~i~W~~~~~~~~~~~---~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |.+.+. | .+.+.|++++..+....   .....++      .|.|.....+|.|.|+|.|.|....
T Consensus       264 C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          264 CLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             EEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence            999885 3 35899999998765321   1112222      3455555556799999999998765

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.75  E-value=2.1e-17  Score=100.21  Aligned_cols=89  Identities=26%  Similarity=0.483  Sum_probs=75.4

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeeec---CCeEEEecCCCCCCeEEEEEEEc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP---SRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ++....   ..+|.|.++..+|+|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            566777778889999999999999999999999999999887643   233322   24699999999999999999999


Q ss_pred             CCcceEEEEEEEEEe
Q psy573          192 AVGKISASATLTVQS  206 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~  206 (216)
                      ..|..+.++.|.|++
T Consensus        85 ~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           85 EFGSDSATVNIHIRS   99 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEE
Confidence            999999999998874

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=124.77  Aligned_cols=159  Identities=13%  Similarity=0.178  Sum_probs=106.1

Q ss_pred             EecCCcEEEEeeCCCCC---C-CCeeEEeeCCEEeccccCceE------EEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           36 VAAGDTALLECGPPRGH---P-EPTLVWKKNGHPIDFENSKRL------RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~---~-~~~~~W~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +..|+.++|.|.+ .+.   | ...+.||+++..+........      .......|.|.+++.+|+|.|+|.+.+..+.
T Consensus       180 ~~~g~~v~L~C~~-~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVV-VDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEE-eccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            7899999999998 444   2 237999999865421111000      0111236999999999999999999987653


Q ss_pred             cc-cceeEE--EEeecceEEeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe---eeecC------Ce
Q psy573          106 RE-STDAVL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM---SVLPS------RS  171 (216)
Q Consensus       106 ~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~---~~~~~------~~  171 (216)
                      .. ...+.+  .+..+|.+...+.......|+.+.|.|.+.+.+  .+.+.|++++..+.....   ....+      ..
T Consensus       259 ~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~  338 (376)
T 2aty_A          259 APIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK  338 (376)
T ss_pred             CceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence            21 112211  345567776666655555688999999998863  458999999987643211   11122      34


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      |.|.....+|.|.|+|.|.|....
T Consensus       339 L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          339 LNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             EEEcHHHhCCCCcEEEEEEeCCCC
Confidence            666666677899999999997654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.75  E-value=6.2e-20  Score=139.77  Aligned_cols=177  Identities=14%  Similarity=0.208  Sum_probs=113.8

Q ss_pred             hceeeEEe---eccceEecccceEEecCCcEEEEeeCCCCC-CCC-eeEEeeCCEEecccc------CceEEEecCcEEE
Q psy573           15 KKKLKIEM---LREEFRVQPKSQRVAAGDTALLECGPPRGH-PEP-TLVWKKNGHPIDFEN------SKRLRLVDGTNLA   83 (216)
Q Consensus        15 ~~~l~v~~---~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~-~~~W~~~~~~~~~~~------~~~~~~~~~~~l~   83 (216)
                      .+.|.|..   .+|.+...+....+.+|+.++|.|.+ .+. |.+ .+.|++++.......      .+.+..  .+.|.
T Consensus       107 ~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~-~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~s~L~  183 (434)
T 1igy_B          107 GTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV-KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVT  183 (434)
T ss_dssp             CEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEE-EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEE--EEEEE
T ss_pred             ceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEE-eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEE--EEEEE
Confidence            34566643   23444433333345799999999998 443 665 999999987531110      111111  24689


Q ss_pred             EcccCCCCCceEEEEEEcCCCCcccceeEEEEee---------c---ceEE-eCCCcee-EeCCCcEEEEEEeCCCC---
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------K---PYII-RGPKDTT-VSAGSIIVFECSVGGDA---  146 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------~---p~~~-~~~~~~~-~~~g~~~~l~C~~~~~p---  146 (216)
                      |.++..+| |.|.|.+.+..+... ....+.+..         .   |.+. ..+.... +.+|+.+.|.|.+.+.+   
T Consensus       184 i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P  261 (434)
T 1igy_B          184 VPSSPRPS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDD  261 (434)
T ss_dssp             EETTTTTS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSC
T ss_pred             EcchhcCC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCC
Confidence            99999889 999999999876531 112221110         0   3333 2222222 78899999999998874   


Q ss_pred             -CcEEEEeeCCccCCCCCe---------eeecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          147 -VLTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       147 -~~~i~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                       .+.+.|++++..+.....         .....+.|.|.++..+|.|.|+|.+.|..|..
T Consensus       262 ~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          262 PEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             CCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             CCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence             358999999876642211         01123568999999999999999999988854

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.75  E-value=2.1e-19  Score=129.00  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             hHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573           11 EEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR   88 (216)
Q Consensus        11 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (216)
                      ..++.+.|.|...|..+.+.+....+.+|+.++|.|.+..+.|..  .+.||+++..+......  .......|.+....
T Consensus        73 ~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--~~~~~~~l~~~~~~  150 (291)
T 1mq8_A           73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRR  150 (291)
T ss_dssp             EEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--BTTEEEEEECCCSS
T ss_pred             cEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--CCCceEEEEeeeee
Confidence            345667777777777777777666688999999999985555654  58999999877422210  00012356666777


Q ss_pred             CCCCceEEEEEEcCCCC-------cccceeEEEEeecceE-EeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCCc
Q psy573           89 KTDDGRYQCVVKNVAGT-------RESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLGS  157 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~-------~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~  157 (216)
                      .+|.+.|+|++.+..+.       ..+....|.|.++|.. ........+.+|+.+.|.|.+.+.+++   .+.|.+++.
T Consensus       151 ~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~  230 (291)
T 1mq8_A          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ  230 (291)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------------------------
T ss_pred             ccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCE
Confidence            77777999999976431       1244567777777532 111112357789999999999987554   599999998


Q ss_pred             cCCCCCeeeecCCeEEEecC---CCC--CCeEEEEEEEcCCcceEEEEEEEEEecce
Q psy573          158 AMPEDRMSVLPSRSLQLSDV---RLE--DGGEYVCEAENAVGKISASATLTVQSKYL  209 (216)
Q Consensus       158 ~~~~~~~~~~~~~~l~i~~~---~~~--d~g~y~C~~~n~~~~~~~~~~l~v~~~p~  209 (216)
                      .+......  .+..+.+...   ..+  +.+.|.|.+.+..........|.|.+-|.
T Consensus       231 ~l~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~  285 (291)
T 1mq8_A          231 RLNPTVTY--GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (291)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ecCceeee--cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence            77643211  2223333222   233  35678888887665566666777765443

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.75  E-value=7e-18  Score=117.58  Aligned_cols=169  Identities=13%  Similarity=0.217  Sum_probs=104.6

Q ss_pred             ccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCC--E---Ee------------ccccCceEEEec-----CcEEEEccc
Q psy573           31 PKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNG--H---PI------------DFENSKRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~~-----~~~l~i~~~   87 (216)
                      +..+.+.+|++++|.|.+... .+...+.||+..  .   .+            .....+|+....     +.+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            445789999999999987221 234689999842  1   11            011223444332     235999999


Q ss_pred             CCCCCceEEEEEEcCCC--------CcccceeEEEEe----ecceEEeCCCceeEeCCCcEEEEEEeCCC-C-CcEEEEe
Q psy573           88 RKTDDGRYQCVVKNVAG--------TRESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVFECSVGGD-A-VLTVHWK  153 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~  153 (216)
                      +.+|+|.|.|.+.+..+        ........|.|.    .+|.+...+....+..|..+.|.|.+.+. | .+.+.| 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-  165 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  165 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE-
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE-
Confidence            99999999999976421        111223355553    23444432223334578999999999764 4 457999 


Q ss_pred             eCCccCCCCC----eeee------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          154 RLGSAMPEDR----MSVL------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       154 ~~~~~~~~~~----~~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                       ++..+....    ....      ..+.|.|.....+| |.|+|.|.|..+.......|
T Consensus       166 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~  222 (226)
T 3mlr_H          166 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  222 (226)
T ss_dssp             -GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             -CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence             443332110    0111      12368888888888 99999999998876555443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.74  E-value=4.4e-17  Score=101.35  Aligned_cols=95  Identities=29%  Similarity=0.371  Sum_probs=80.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +.....   ...|.|.++..+|+|.|+|.+.|..
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   86 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   86 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECC
Confidence            566667778889999999999999999999999999999887644 333322   3579999999999999999999999


Q ss_pred             cceEEEEEEEEEecceeee
Q psy573          194 GKISASATLTVQSKYLKVI  212 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~~~~  212 (216)
                      |.....+.|.|.+.|..+.
T Consensus        87 g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           87 GSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             CEEECCEEEEEECSCSCCC
T ss_pred             CcEEEEEEEEEECCCCCCC
Confidence            9998899999998776554

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.74  E-value=2.3e-16  Score=122.53  Aligned_cols=171  Identities=13%  Similarity=0.114  Sum_probs=107.9

Q ss_pred             ccceEecc-cceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecC------cEEEEcccCCCCCce
Q psy573           24 REEFRVQP-KSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDG------TNLAIQDSRKTDDGR   94 (216)
Q Consensus        24 ~~~~~~~~-~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~------~~l~i~~~~~~d~g~   94 (216)
                      +|.+.+.+ ....+.+|+.++|.|.+....| ...+.|++++..+.... ........+      +.|.|.....+|.|.
T Consensus       296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~  375 (512)
T 1zvo_C          296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS  375 (512)
T ss_pred             CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence            34444433 3345678999999999833334 34899999998763111 111111112      359999999999999


Q ss_pred             EEEEEEcCCCCcccceeEEEE----eecceEEeCCCceeEeCCCcEE-EEEEeCCCCCc--EEEEeeCCccCCCCCee--
Q psy573           95 YQCVVKNVAGTRESTDAVLRV----LVKPYIIRGPKDTTVSAGSIIV-FECSVGGDAVL--TVHWKRLGSAMPEDRMS--  165 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~i~W~~~~~~~~~~~~~--  165 (216)
                      |.|.+.+..+......+....    ..+|.+...+...   .|+.+. |.|.+.+.+++  .+.|+++|..+......  
T Consensus       376 y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~  452 (512)
T 1zvo_C          376 VTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPA  452 (512)
T ss_pred             EEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcccccc
Confidence            999999876543211111111    2345554433222   788899 99999986443  68999999887543211  


Q ss_pred             ---eecCC-------eEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          166 ---VLPSR-------SLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       166 ---~~~~~-------~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                         ...++       .|.+.....+|.|.|+|.|.|......
T Consensus       453 ~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~  494 (512)
T 1zvo_C          453 RPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTL  494 (512)
T ss_pred             ceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCc
Confidence               11222       355566666679999999999876533

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=1.1e-17  Score=102.64  Aligned_cols=95  Identities=29%  Similarity=0.482  Sum_probs=74.7

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .||.|...|.++.+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......+.... ...|.|.+++.+|+|.|+|.+.|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            47889889999999999999999998 78899999999999988543222222222 23799999999999999999999


Q ss_pred             CCCCcccceeEEEEeecc
Q psy573          102 VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p  119 (216)
                      ..|.. ...+.|.|..+|
T Consensus        91 ~~G~~-~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEA-YAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEE-EEEEEEEEEC--
T ss_pred             CCCEE-EEEEEEEEEcCC
Confidence            88865 446777777654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.73  E-value=1.8e-17  Score=100.51  Aligned_cols=92  Identities=23%  Similarity=0.445  Sum_probs=74.7

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .||.|...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....   ...|.|.+++.+|+|.|+|.+
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            36788888888999999999999998 78899999999999998655544554432   247999999999999999999


Q ss_pred             EcCCCCcccceeEEEEe
Q psy573          100 KNVAGTRESTDAVLRVL  116 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~  116 (216)
                      .|..|.. ...+.|.|.
T Consensus        83 ~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCEE-EEEEEEEEE
Confidence            9988764 445666654

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.73  E-value=2.2e-18  Score=120.87  Aligned_cols=167  Identities=16%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             ecccceE-EecCCcEEEEeeCCCCC--C-CCeeEEeeCCEEeccccCceEEEec------CcEEEEcccCCCCCceEEEE
Q psy573           29 VQPKSQR-VAAGDTALLECGPPRGH--P-EPTLVWKKNGHPIDFENSKRLRLVD------GTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        29 ~~~~~~~-~~~G~~~~l~C~~~~~~--~-~~~~~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~   98 (216)
                      ..|.... +..|+.++|.|.+....  | ...+.|+++|..+............      .+.|.|.....+|.|.|.|.
T Consensus        28 ~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~  107 (240)
T 4acp_A           28 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK  107 (240)
T ss_dssp             ECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEE
T ss_pred             ECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEE
Confidence            3444444 55799999999984333  3 3489999999987432111111111      13577777777788999999


Q ss_pred             EEcCCCCc-ccceeEE--EEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCCC---eeeecC-
Q psy573           99 VKNVAGTR-ESTDAVL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSAMPEDR---MSVLPS-  169 (216)
Q Consensus        99 ~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~---~~~~~~-  169 (216)
                      +.+..+.. ....+.+  .+..+|.+...+.......|+.+.|.|.+.+. |.+ .+.|++++..+....   .....+ 
T Consensus       108 v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dg  187 (240)
T 4acp_A          108 VSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDG  187 (240)
T ss_dssp             EECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTS
T ss_pred             EEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCC
Confidence            99876532 1222221  23356666554444333458899999999884 543 799999998764211   111122 


Q ss_pred             -----CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          170 -----RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       170 -----~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                           +.|.+......+.|.|+|.|.|....
T Consensus       188 t~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~  218 (240)
T 4acp_A          188 SFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  218 (240)
T ss_dssp             CEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence                 34555555556789999999998753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=7.5e-17  Score=97.88  Aligned_cols=92  Identities=28%  Similarity=0.577  Sum_probs=78.6

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  .+.....++.|.|.++..+|+|.|+|.+.|..|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG   86 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCC
Confidence            456677777888899999999999999999999999999887652  344445667899999999999999999999999


Q ss_pred             ceEEEEEEEEEecc
Q psy573          195 KISASATLTVQSKY  208 (216)
Q Consensus       195 ~~~~~~~l~v~~~p  208 (216)
                      .....+.|.|.++|
T Consensus        87 ~~~~~~~l~V~~~~  100 (100)
T 2edj_A           87 ETSWSAVLDVTESG  100 (100)
T ss_dssp             CCBCCEEEEEESCC
T ss_pred             CEEEEEEEEEecCC
Confidence            98888999888764

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.72  E-value=6.2e-16  Score=120.08  Aligned_cols=169  Identities=19%  Similarity=0.261  Sum_probs=107.6

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--C--CeeEEeeC--CEE---ec-----------cccCceEEEec-----CcEEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--E--PTLVWKKN--GHP---ID-----------FENSKRLRLVD-----GTNLAI   84 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~--~~~~W~~~--~~~---~~-----------~~~~~~~~~~~-----~~~l~i   84 (216)
                      .|..+.+.+|+.++|.|.+ .+.+  .  ..+.||+.  +..   +.           ....+++....     +.+|.|
T Consensus         6 qp~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIV-SGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEE-cccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            4567889999999999998 4322  2  67999985  221   10           01234555442     257999


Q ss_pred             cccCCCCCceEEEEEEcCCC-----------C-cccceeEEEEee----cceEEe-CCCceeEeCCCcEEEEEEeCCC-C
Q psy573           85 QDSRKTDDGRYQCVVKNVAG-----------T-RESTDAVLRVLV----KPYIIR-GPKDTTVSAGSIIVFECSVGGD-A  146 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~-----------~-~~~~~~~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p  146 (216)
                      .+++.+|+|.|+|.+.+..+           . .......|.|..    +|.+.. .+.......++.+.|.|.+.+. |
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            99999999999999987532           1 112345666663    344432 1111102246899999999876 6


Q ss_pred             Cc-EEEEeeCCccCCC---CCe-----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          147 VL-TVHWKRLGSAMPE---DRM-----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       147 ~~-~i~W~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      .+ .+.|++++.....   ...     .....+.|.|.....+ .|.|+|.|.|..+.....+
T Consensus       165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            55 8999996543210   000     0111234778777777 8999999999988755544

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.72  E-value=4.1e-17  Score=100.48  Aligned_cols=100  Identities=25%  Similarity=0.401  Sum_probs=69.3

Q ss_pred             eEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee-cCCeEEEecCCCCCCeEEEEE
Q psy573          111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL-PSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       111 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      +.+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .... ....|.|.++..+|+|.|+|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence            34566778888888888899999999999999999999999999998775432 2222 457899999999999999999


Q ss_pred             EEcCCcceEEEEEEEEEeccee
Q psy573          189 AENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      +.|..|.....+.|.|.++|..
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEGAQEK  104 (108)
T ss_dssp             EC----CEEEEEEEEEEC----
T ss_pred             EEeCCCceEEEEEEEEeCCCcc
Confidence            9999999999999999987754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.72  E-value=1.6e-16  Score=119.19  Aligned_cols=179  Identities=18%  Similarity=0.244  Sum_probs=121.7

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      +..+.|.|... |.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....   ...|.|.++..
T Consensus        90 ~~~~~l~V~~~-P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~  167 (389)
T 2jll_A           90 QKSMYLDIEYA-PKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD  167 (389)
T ss_dssp             EEEEEEEEEEE-EEECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCST
T ss_pred             ceEEEEEEEeC-CEEecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCCh
Confidence            45667777654 666555555678999999999998 77888999999999988554433444332   34799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCce--eEeCCCcEEEEEEeC----CCCCc--EEEEeeCCccCCC
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT--TVSAGSIIVFECSVG----GDAVL--TVHWKRLGSAMPE  161 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~g~~~~l~C~~~----~~p~~--~i~W~~~~~~~~~  161 (216)
                      +|+|.|.|.+.|..|.. ...+.+.+...|..   +...  ....+..+.|.|...    +.|..  .+.|.+++...-.
T Consensus       168 ~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~---P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~  243 (389)
T 2jll_A          168 NDFGRYNCTATNHIGTR-FQEYILALADVPSS---PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK  243 (389)
T ss_dssp             TSSEEEEEEEEETTEEE-EEEEEEEECCCCCC---CEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE
T ss_pred             hhCEEEEEEEEcCCCcE-EEEEEEEecCCCCC---CcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE
Confidence            99999999999988764 33455555444321   1111  223457788988742    22322  4678776642211


Q ss_pred             CCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          162 DRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       162 ~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                       .... .....+.|.++...+.+.|.|.+.|..|....
T Consensus       244 -~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~  280 (389)
T 2jll_A          244 -IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY  280 (389)
T ss_dssp             -EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCC
T ss_pred             -EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCC
Confidence             0111 12356999999999999999999999886433

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=1.4e-16  Score=99.27  Aligned_cols=98  Identities=24%  Similarity=0.407  Sum_probs=82.1

Q ss_pred             EeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeecC--C--eEEEecCCCCCCeEEEEE
Q psy573          115 VLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPS--R--SLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       115 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~--~--~l~i~~~~~~d~g~y~C~  188 (216)
                      ...+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .+......  +  +|.|.++..+|+|.|+|.
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            34567777778888999999999999999999999999999988763  33433322  2  799999999999999999


Q ss_pred             EEcCCcceEEEEEEEEEecceeee
Q psy573          189 AENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      +.|..|.....+.|.|..+|....
T Consensus        92 a~N~~G~~~~~~~l~V~~~p~~~~  115 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTARPNQTL  115 (116)
T ss_dssp             EEETTEEEEEEEEEEEECCSCCCC
T ss_pred             EEcCCCeEEEEEEEEEeCCCCCCC
Confidence            999999999999999998886543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=1.6e-16  Score=96.44  Aligned_cols=92  Identities=28%  Similarity=0.438  Sum_probs=76.1

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCC--eEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSR--SLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~--~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....   ......+  .|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            45666667778889999999999999999999999999998775432   2222333  799999999999999999999


Q ss_pred             CCcceEEEEEEEEEecc
Q psy573          192 AVGKISASATLTVQSKY  208 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p  208 (216)
                      ..|....++.|.|.+++
T Consensus        84 ~~g~~~~~~~l~V~~~e  100 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAKE  100 (100)
T ss_dssp             TTEEEEEEEEEEEECCC
T ss_pred             CCCeEEEEEEEEEEecC
Confidence            99999999999888653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.70  E-value=1.6e-15  Score=105.05  Aligned_cols=165  Identities=17%  Similarity=0.318  Sum_probs=115.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +.+.+.|....+..|+.++|.|.+..+.|   ...+.|||++..+..         ....|.+..+...|+|.|+|.+.+
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTD   73 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQD   73 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEE
Confidence            34556677778899999999999855656   458999999987621         134788999999999999999998


Q ss_pred             CCCCccc-ceeEEEEeecceEE-eCCCceeEeCCCcEEEEEEe--CC-CC-----CcEEEEeeCCccCCCCCeeeecCCe
Q psy573          102 VAGTRES-TDAVLRVLVKPYII-RGPKDTTVSAGSIIVFECSV--GG-DA-----VLTVHWKRLGSAMPEDRMSVLPSRS  171 (216)
Q Consensus       102 ~~~~~~~-~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~~~~~~  171 (216)
                      ..+.... ..+.+.....+.+. ..|.......|..+.|.+.+  .+ .+     ..++.|++++..+.       ....
T Consensus        74 a~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is-------gAq~  146 (304)
T 3shs_A           74 TDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID-------TTQD  146 (304)
T ss_dssp             TTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE-------SSSE
T ss_pred             CCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc-------Cccc
Confidence            7765422 22222222222332 23444556677889998887  43 33     46899999997653       2345


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQ  205 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~  205 (216)
                      +.+......+.|.|.|.+.|..+.  .+.++.+.+.
T Consensus       147 lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~  182 (304)
T 3shs_A          147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA  182 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred             cceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence            677778888999999999998763  4555555544

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.70  E-value=3.2e-16  Score=94.87  Aligned_cols=90  Identities=27%  Similarity=0.313  Sum_probs=75.3

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee--cC--CeEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--PS--RSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~--~~--~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ....  ..  ..|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            35667777788899999999999999999999999999998876543 2221  22  3799999999999999999999


Q ss_pred             CCcceEEEEEEEEEe
Q psy573          192 AVGKISASATLTVQS  206 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~  206 (216)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999998898888875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.70  E-value=3.8e-16  Score=113.35  Aligned_cols=152  Identities=19%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcc-cCCCCCceEEEEEEcCCCCcccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQD-SRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........... ....|.|.+ +..+|+|.|+|.+.|..|.. ..
T Consensus       112 ~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~  189 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QK  189 (305)
T ss_dssp             CCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EE
T ss_pred             ccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-ee
Confidence            45778899999999998 7888899999999887743322222222 235799999 99999999999999988764 44


Q ss_pred             eeEEEEeecceEEeCCCceeE--eCCCcEEEEEEeC--------------CCCCcEEEEeeCCccCCCCCeeeecCCeEE
Q psy573          110 DAVLRVLVKPYIIRGPKDTTV--SAGSIIVFECSVG--------------GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQ  173 (216)
Q Consensus       110 ~~~l~v~~~p~~~~~~~~~~~--~~g~~~~l~C~~~--------------~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~  173 (216)
                      .+.|.|...|..   +....+  ..+..+.|.|...              ..+.+...|.+.+.         .....+.
T Consensus       190 ~~~l~v~~~P~~---p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~---------~~~~~~~  257 (305)
T 2nzi_A          190 TVELDVADVPDP---PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ---------ARETRYT  257 (305)
T ss_dssp             EEEEEEEBCCCC---CEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEE---------ESSSEEE
T ss_pred             EEEEEEecCCCC---CCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcc---------ccCceEE
Confidence            567777655421   111111  2345666666642              22222223333221         1256799


Q ss_pred             EecCCCCCCeEEEEEEEcCCcceE
Q psy573          174 LSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       174 i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      |.++...+.|.|+|.|.|..|...
T Consensus       258 i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          258 VINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             ECSCCSSCEEEEEEEEEETTEECC
T ss_pred             ecCCCCCCeEEEEEEEEeCCcccC
Confidence            999999999999999999998744

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=97.08  Aligned_cols=93  Identities=24%  Similarity=0.315  Sum_probs=77.9

Q ss_pred             EeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEE
Q psy573          115 VLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       115 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... +.....   ...|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            345677777788889999999999999999999999999999887654 332222   2369999999999999999999


Q ss_pred             cCCcceEEEEEEEEEec
Q psy573          191 NAVGKISASATLTVQSK  207 (216)
Q Consensus       191 n~~~~~~~~~~l~v~~~  207 (216)
                      |..|.....+.|.|.+.
T Consensus        85 N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           85 NYKGEASDYATLDVTGG  101 (103)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             eCCCcEEEEEEEEEECC
Confidence            99999999999988864

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=96.05  Aligned_cols=92  Identities=35%  Similarity=0.493  Sum_probs=77.2

Q ss_pred             EEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       114 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|.
T Consensus         7 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A            7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             CCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             CcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            345677888788888999999999999999999999999999988765443332 3357999999999999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy573          193 VGKISASATLTVQ  205 (216)
Q Consensus       193 ~~~~~~~~~l~v~  205 (216)
                      .|....++.|.|+
T Consensus        87 ~g~~~~~~~l~V~   99 (99)
T 2yr3_A           87 LGQVSCSAWVTVH   99 (99)
T ss_dssp             SCEEEEECCEEEC
T ss_pred             CCeEEEEEEEEEC
Confidence            9998888877763

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.69  E-value=2.7e-16  Score=94.10  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=72.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCCCCCeeee--cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMPEDRMSVL--PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+........  ....|.|.++..+|+|.|+|.+.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            456655667778999999999999999999999999999  77654432222  23569999999999999999999999


Q ss_pred             cceEEEEEEEEE
Q psy573          194 GKISASATLTVQ  205 (216)
Q Consensus       194 ~~~~~~~~l~v~  205 (216)
                      |.....+.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T 1wit_A           82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CeEEEEEEEEEC
Confidence            998888888763

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=112.40  Aligned_cols=172  Identities=12%  Similarity=0.233  Sum_probs=106.1

Q ss_pred             cccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCC--E---Ee------------ccccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNG--H---PI------------DFENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~--~---~~------------~~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .+..+.+.+|++++|.|.+... .....+.||+..  .   .+            .....+|+....     +.+|.|.+
T Consensus        29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  108 (267)
T 3u1s_H           29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRG  108 (267)
T ss_dssp             ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECS
T ss_pred             eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence            3445789999999999987221 234689999842  1   11            011234555432     23599999


Q ss_pred             cCCCCCceEEEEEEc-------CC------------C-C----cccceeEEEEe----ecceEEeCCCceeEeCCCcEEE
Q psy573           87 SRKTDDGRYQCVVKN-------VA------------G-T----RESTDAVLRVL----VKPYIIRGPKDTTVSAGSIIVF  138 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l  138 (216)
                      ++.+|+|.|.|.+.+       ..            . .    .......|.|.    .+|.+...........|+.+.|
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l  188 (267)
T 3u1s_H          109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAAL  188 (267)
T ss_dssp             CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEE
T ss_pred             CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEE
Confidence            999999999999861       10            0 0    01223455554    2444543222233457899999


Q ss_pred             EEEeCCC-C-CcEEEEeeCCccCCCCC----------eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          139 ECSVGGD-A-VLTVHWKRLGSAMPEDR----------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       139 ~C~~~~~-p-~~~i~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      .|.+.+. | .+.+.|  ++..+....          ......+.|.|.....+| +.|+|.+.|..+.......+.+
T Consensus       189 ~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          189 GCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            9999764 4 457999  554443210          011112358888888888 9999999998877665555443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5.9e-16  Score=96.80  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             EeecceEEe---CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-c--CCeEEEecCCCCCCeEEEEE
Q psy573          115 VLVKPYIIR---GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-P--SRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       115 v~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-~--~~~l~i~~~~~~d~g~y~C~  188 (216)
                      +..+|.+..   .+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...+.... .  ...|.|.++..+|+|.|+|.
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            345666643   24567888999999999999999999999999998875444433 2  24599999999999999999


Q ss_pred             EEcCCcceEEEEEEEEEecc
Q psy573          189 AENAVGKISASATLTVQSKY  208 (216)
Q Consensus       189 ~~n~~~~~~~~~~l~v~~~p  208 (216)
                      +.|..|.....+.|.|.++|
T Consensus        98 a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EECSSCEECCEEEEEEECCC
T ss_pred             EEeCCCeEEEEEEEEEEcCC
Confidence            99999999999999998876

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=98.53  Aligned_cols=93  Identities=30%  Similarity=0.511  Sum_probs=79.6

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  .+.....++.|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE   87 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCc
Confidence            45666667778899999999999999999999999999988753  4455556789999999999999999999999999


Q ss_pred             eEEEEEEEEEeccee
Q psy573          196 ISASATLTVQSKYLK  210 (216)
Q Consensus       196 ~~~~~~l~v~~~p~~  210 (216)
                      ....+.|.|.+.+..
T Consensus        88 ~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           88 ATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEEECCEEEECCSCC
T ss_pred             EEEEEEEEEEeCCCC
Confidence            888999999876543

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.68  E-value=6.8e-16  Score=114.19  Aligned_cols=175  Identities=19%  Similarity=0.260  Sum_probs=108.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC-------------CCCeeEEeeC--CE--Eecc--c---------cCceEE--
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH-------------PEPTLVWKKN--GH--PIDF--E---------NSKRLR--   75 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~-------------~~~~~~W~~~--~~--~~~~--~---------~~~~~~--   75 (216)
                      .+...+.++.+.+|++++|.|......             ....+.||+.  ++  .+..  .         ..++..  
T Consensus       160 ~V~tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~  239 (401)
T 3f8u_B          160 TVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFA  239 (401)
T ss_dssp             EEEESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEE
T ss_pred             EEeCCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEE
Confidence            334456678999999999999862221             1357899973  32  1110  0         111111  


Q ss_pred             ----------EecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCcee-EeCCC-cEEEEEEeC
Q psy573           76 ----------LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT-VSAGS-IIVFECSVG  143 (216)
Q Consensus        76 ----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~  143 (216)
                                ...+.+|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|.+...+.... +..|+ .+.|.|.+.
T Consensus       240 ~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~  318 (401)
T 3f8u_B          240 AWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVS  318 (401)
T ss_dssp             EESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEE
T ss_pred             eecccccccccCCcEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEec
Confidence                      1134689999999999999999998865543 4457788888888766554443 45676 799999997


Q ss_pred             CC-CC--cEEEEe-eCCc---cCCCC------CeeeecCCe------EEEecCCC-CCCeEEEEEEEcCC---cceEEEE
Q psy573          144 GD-AV--LTVHWK-RLGS---AMPED------RMSVLPSRS------LQLSDVRL-EDGGEYVCEAENAV---GKISASA  200 (216)
Q Consensus       144 ~~-p~--~~i~W~-~~~~---~~~~~------~~~~~~~~~------l~i~~~~~-~d~g~y~C~~~n~~---~~~~~~~  200 (216)
                      +. |.  +.+.|. +++.   .....      ......+++      |.+..... .+.+.|+|.+.|..   +..+.++
T Consensus       319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sV  398 (401)
T 3f8u_B          319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEV  398 (401)
T ss_dssp             EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEE
T ss_pred             CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEE
Confidence            75 54  689995 7652   11111      111222333      33333322 24569999999986   4444444


Q ss_pred             E
Q psy573          201 T  201 (216)
Q Consensus       201 ~  201 (216)
                      +
T Consensus       399 t  399 (401)
T 3f8u_B          399 T  399 (401)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.68  E-value=8.7e-19  Score=121.19  Aligned_cols=162  Identities=13%  Similarity=0.216  Sum_probs=101.5

Q ss_pred             EecccceEEecCCcEEEEeeCCCCC-C--CCeeEEeeCCEEeccc--------cCceEEEecCcEEEEcccCCCCCceEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGH-P--EPTLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~-~--~~~~~W~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~d~g~y~   96 (216)
                      ...|....+.+|+.++|.|.+ .+. +  .+.+.| ++ ..+...        ..+.+  .....|.|.+++.+|+|.|.
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~-~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~g~Y~   82 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTL-TGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCY--SVSSVLPGCAEPWNHGKTFT   82 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEE-TTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCC--CEEEECTTTHHHHHHTCEEE
T ss_pred             EECcChHHhccCCCcEEEEEE-eeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcE--EEEEEEEEeHHHcCCCCeEE
Confidence            344666778899999999998 444 4  268999 43 332110        01111  11236888888899999999


Q ss_pred             EEEEcCCCCcccceeEE---EEeecceEEeCC-CceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCccCCCCC-----ee
Q psy573           97 CVVKNVAGTRESTDAVL---RVLVKPYIIRGP-KDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR-----MS  165 (216)
Q Consensus        97 C~~~~~~~~~~~~~~~l---~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~-----~~  165 (216)
                      |.+.+..+.. .....+   .+..+|.+...+ ....+..|+.+.|.|.+.+. |. +.+.|++++..+....     ..
T Consensus        83 C~~~~~~~~~-~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  161 (214)
T 1ow0_A           83 CTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR  161 (214)
T ss_dssp             EEECCSSCSS-CEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred             EEEecCCCCC-ceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence            9999876532 111222   224566654332 22345678899999999885 43 4899999998775432     12


Q ss_pred             ee---cCCeEEE------ecCCCCCCeEEEEEEEcCCcc
Q psy573          166 VL---PSRSLQL------SDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       166 ~~---~~~~l~i------~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..   .++++.+      .....++.|.|+|.|.|....
T Consensus       162 ~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          162 QEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             ECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            22   3343333      333334589999999998754

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.68  E-value=7.9e-16  Score=93.11  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=74.8

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC--eeeecCC---eEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVLPSR---SLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~---~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  .......   .|.|.++..+|+|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            45677777788899999999999999999999999999998875432  2222222   699999999999999999999


Q ss_pred             CCcceEEEEEEEEEe
Q psy573          192 AVGKISASATLTVQS  206 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~  206 (216)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999998898888875

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=4.6e-16  Score=94.32  Aligned_cols=92  Identities=25%  Similarity=0.475  Sum_probs=74.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc--EEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............++  .|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            5777778888999999999999998 6788899999999998865544444444443  899999999999999999999


Q ss_pred             CCCCcccceeEEEEee
Q psy573          102 VAGTRESTDAVLRVLV  117 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~  117 (216)
                      ..|.. ...+.|.|..
T Consensus        84 ~~g~~-~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEA-TFTVQLDVLA   98 (100)
T ss_dssp             TTEEE-EEEEEEEEEC
T ss_pred             CCCeE-EEEEEEEEEe
Confidence            88764 4556666654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=1.3e-15  Score=106.13  Aligned_cols=165  Identities=15%  Similarity=0.165  Sum_probs=100.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCC--E---Eec-------cccCceEEEec-----CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID-------FENSKRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~--~---~~~-------~~~~~~~~~~~-----~~~l~i~~~   87 (216)
                      +...|..+.+.+|+.++|.|.+ .+.+  ...+.||+..  .   .+.       ....+++....     ..+|.|.++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~-s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   82 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSM-KGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEE-CSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEe-cCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence            4556777899999999999997 3322  4679999842  1   111       11234555542     237999999


Q ss_pred             CCCCCceEEEEEEcCCC------C-cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CCc-EEEEeeCCcc
Q psy573           88 RKTDDGRYQCVVKNVAG------T-RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVL-TVHWKRLGSA  158 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~  158 (216)
                      +.+|+|.|.|.+.+...      . .......|.|.........|. ..+.. ..+.|.|.+.+. |.+ .+.|.++ ..
T Consensus        83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~-v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~  159 (229)
T 1hxm_A           83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPS-VFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK  159 (229)
T ss_dssp             CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCE-EEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred             CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCc-EEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence            99999999999987531      1 112234666654111111111 11111 124899999775 443 8999998 65


Q ss_pred             CCCCC--eeeecCCeEEEecCC-CCCCeEEEEEEEcCCcc
Q psy573          159 MPEDR--MSVLPSRSLQLSDVR-LEDGGEYVCEAENAVGK  195 (216)
Q Consensus       159 ~~~~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~~~  195 (216)
                      +....  .....++++.+.... .++.|.|+|.+.|..+.
T Consensus       160 ~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          160 ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             EEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTEE
T ss_pred             EecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCCC
Confidence            53221  112334566665433 36789999999998643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.67  E-value=4.3e-16  Score=102.04  Aligned_cols=100  Identities=29%  Similarity=0.434  Sum_probs=81.4

Q ss_pred             EEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee--c--CCeEEEecCCCCCCeEEE
Q psy573          112 VLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--P--SRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       112 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~  186 (216)
                      .+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ....  .  ...|.|.++...|.|.|+
T Consensus        35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  114 (154)
T 1fhg_A           35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT  114 (154)
T ss_dssp             CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred             cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence            4455667888888888899999999999999999999999999998876543 3332  1  247999999999999999


Q ss_pred             EEEEcCCcceEEEEEEEEEecceee
Q psy573          187 CEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       187 C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |.+.|..|.....+.|.|..+|...
T Consensus       115 C~a~N~~G~~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          115 CKAVNSLGEATCTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEETTEEEEEEEEEEEECC----
T ss_pred             EEEEECCCeEEEEEEEEEeCcCcCC
Confidence            9999999999999999999877654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=6.7e-16  Score=93.61  Aligned_cols=92  Identities=32%  Similarity=0.511  Sum_probs=75.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++....++.|.|.+++.+|+|.|+|.+.|..
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPG-RDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEE-ECSSCCEEEEEESSSEESS-SCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCC-CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            5777778888899999999999998 7888899999999988742 2344455667789999999999999999999988


Q ss_pred             CCcccceeEEEEeec
Q psy573          104 GTRESTDAVLRVLVK  118 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~  118 (216)
                      +.. ...+.|.|..+
T Consensus        86 g~~-~~~~~l~V~~~   99 (100)
T 2edj_A           86 GET-SWSAVLDVTES   99 (100)
T ss_dssp             CCC-BCCEEEEEESC
T ss_pred             CCE-EEEEEEEEecC
Confidence            765 55667777654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=92.42  Aligned_cols=90  Identities=30%  Similarity=0.539  Sum_probs=75.3

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +......   ..|.|.++..+|+|.|+|.+.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            4567777778889999999999999999999999999999887543 3333322   26999999999999999999999


Q ss_pred             CcceEEEEEEEEEe
Q psy573          193 VGKISASATLTVQS  206 (216)
Q Consensus       193 ~~~~~~~~~l~v~~  206 (216)
                      .|.....+.|.|.+
T Consensus        85 ~g~~~~~~~l~V~~   98 (99)
T 3puc_A           85 AGSVSSSCKLTIKA   98 (99)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEeEEEEEEEEe
Confidence            99999898888864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.66  E-value=6.1e-16  Score=92.90  Aligned_cols=85  Identities=18%  Similarity=0.351  Sum_probs=70.9

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      |.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+............|.|.++..+|+|.|+|.+.|..|....
T Consensus        10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   88 (95)
T 2ckn_A           10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTT   88 (95)
T ss_dssp             CCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEE
T ss_pred             CEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEE
Confidence            3444456677889999999999998887 799999999887654444445788999999999999999999999999888


Q ss_pred             EEEEEE
Q psy573          199 SATLTV  204 (216)
Q Consensus       199 ~~~l~v  204 (216)
                      .+.|.|
T Consensus        89 ~~~l~V   94 (95)
T 2ckn_A           89 YFSVNV   94 (95)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887766

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.8e-16  Score=96.52  Aligned_cols=93  Identities=28%  Similarity=0.515  Sum_probs=76.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++....++.|.|.+++.+|+|.|+|.+.|..
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~g~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS   85 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBC-CCSSCCEEEEEESSSBCCT-TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSS
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcC-CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCC
Confidence            5777778888999999999999998 7888899999999887743 3344555667799999999999999999999988


Q ss_pred             CCcccceeEEEEeecc
Q psy573          104 GTRESTDAVLRVLVKP  119 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~p  119 (216)
                      +.. ...+.|.|...+
T Consensus        86 g~~-~~~~~l~V~~~~  100 (118)
T 2eo9_A           86 GEA-TWSAYIEVQEFG  100 (118)
T ss_dssp             CEE-EEECCEEEECCS
T ss_pred             CcE-EEEEEEEEEeCC
Confidence            764 445677776654

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.66  E-value=9.3e-15  Score=97.61  Aligned_cols=159  Identities=15%  Similarity=0.216  Sum_probs=103.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeC-CEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKN-GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      +.+.|+...+.+|+++.|+|.+ .. +.+ .+.|... ++.......     .....|.|.+++. | |.|.|.+.... 
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~-~c-~~p~~~~~~t~l~~~~~~~~~-----~~~~~l~l~~vs~-~-g~y~C~~~c~~-   71 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCST-SC-DQPKLLGIETPLPKKELLLPG-----NNRKVYELSNVQE-D-SQPMCYSNCPD-   71 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEE-CS-SSCSEEEEECSSCEEEECSSS-----SSEEEEEEEEECS-C-BCCEEEEECSS-
T ss_pred             eEEECCCcEEeCCCCEEEEEEc-cC-CCCccceEEeeCCCccEeccC-----CceeEEEEEecCc-C-CEEEEEEECCC-
Confidence            4456777789999999999998 33 334 4677532 111100000     0113588999974 4 99999986543 


Q ss_pred             CcccceeEEEEeecce-EEeCCCceeEeCCCcEEEEEEeCCC-CCc--EEEEeeCCccCCCCCee-eecCCeEEEecCCC
Q psy573          105 TRESTDAVLRVLVKPY-IIRGPKDTTVSAGSIIVFECSVGGD-AVL--TVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRL  179 (216)
Q Consensus       105 ~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~  179 (216)
                      ......+.|.|..+|. +.+.+....+.+|+.++|.|.+.+. |..  +|.|++++..+...... .....++.+.....
T Consensus        72 ~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~~~re  151 (185)
T 1iam_A           72 GQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD  151 (185)
T ss_dssp             CEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSS
T ss_pred             CceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEeceec
Confidence            3456678888887774 4455555568999999999999774 543  58999998876421100 00113466665555


Q ss_pred             CCCeEEEEEEEcCCcc
Q psy573          180 EDGGEYVCEAENAVGK  195 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~  195 (216)
                      +|...|+|.|.|..+.
T Consensus       152 D~g~~~sC~A~~~l~~  167 (185)
T 1iam_A          152 HHGAQFSCRTELDLRP  167 (185)
T ss_dssp             CSSCEEEEEEEEECGG
T ss_pred             cCCCeEEEEEEecCcc
Confidence            5555999999998773

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=8.3e-16  Score=94.89  Aligned_cols=95  Identities=25%  Similarity=0.417  Sum_probs=78.1

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeec--CC--eEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP--SR--SLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~--~~--~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .+.....  .+  .|.|.++..+|.|.|+|.+.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            356666667778899999999999999999999999999988764  2333322  22  69999999999999999999


Q ss_pred             cCCcceEEEEEEEEEecceee
Q psy573          191 NAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       191 n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |..|.....+.|.|..+|..+
T Consensus        87 N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             CTTCCEEECCCEEEECCSCCS
T ss_pred             ECCCeEEEEEEEEEECCCCCC
Confidence            999999999999999876543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=95.10  Aligned_cols=95  Identities=33%  Similarity=0.580  Sum_probs=75.8

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--c--EEEEcccCCCCCceEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--T--NLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~~~d~g~y~C~   98 (216)
                      .+|.|...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..++....+  +  .|.|.+++.+|+|.|+|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFN-TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCCC-BTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcCC-CCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            35788888999999999999999998 78888999999999987532 233333322  2  799999999999999999


Q ss_pred             EEcCCCCcccceeEEEEeecce
Q psy573           99 VKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      +.|..|.. ...+.|.|..+|.
T Consensus        92 a~N~~G~~-~~~~~l~V~~~p~  112 (116)
T 2kkq_A           92 AVNEAGVT-TCNTRLDVTARPN  112 (116)
T ss_dssp             EEETTEEE-EEEEEEEEECCSC
T ss_pred             EEcCCCeE-EEEEEEEEeCCCC
Confidence            99988765 4567777776653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=1.4e-15  Score=91.94  Aligned_cols=92  Identities=26%  Similarity=0.326  Sum_probs=71.4

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............+  ..|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            35788888888999999999999998 688899999999999885433222222222  379999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..|.. ...+.|.|.
T Consensus        83 N~~g~~-~~~~~l~V~   97 (99)
T 1g1c_A           83 NIAGET-SSHAFLLVQ   97 (99)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ECCCcE-EEEEEEEEe
Confidence            987765 335556554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.9e-16  Score=96.35  Aligned_cols=95  Identities=28%  Similarity=0.452  Sum_probs=78.9

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-ee--ecC--CeEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SV--LPS--RSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~--~~~--~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..  ...  ..|.|.++..+|.|.|+|.+.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            356777777888999999999999999999999999999987764322 21  122  3799999999999999999999


Q ss_pred             CCcceEEEEEEEEEecceee
Q psy573          192 AVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p~~~  211 (216)
                      ..|.....+.|.|..+|..+
T Consensus        88 ~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             SSCEEEECCEEEEECCCCSS
T ss_pred             CCCEEEEEEEEEEeCCCCCC
Confidence            99999999999999877543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=1.4e-15  Score=94.45  Aligned_cols=94  Identities=27%  Similarity=0.380  Sum_probs=75.4

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.|...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  ++....   ...|.|.+++.+|+|.|+|.+
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESE--HMKVENSENGSKLTILAARQEHCGCYTLLV   82 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSS--SEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCC--CEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence            35777778888999999999999998 788899999999998774332  333332   357999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecce
Q psy573          100 KNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      .|..+.. ...+.|.|...|.
T Consensus        83 ~N~~g~~-~~~~~l~V~~~p~  102 (114)
T 2cqv_A           83 ENKLGSR-QAQVNLTVVDKPD  102 (114)
T ss_dssp             ECSSCEE-ECCEEEEEECSCS
T ss_pred             EECCCcE-EEEEEEEEECCCC
Confidence            9988865 4567888876654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=91.91  Aligned_cols=88  Identities=24%  Similarity=0.372  Sum_probs=69.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      ++.|...+.+..+.+|+.+.|.|.+   .|.+.+.||++|..+...  .++.+..+   ..|.|.++..+|+|.|+|.+.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~--~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQES--DRLKVVQKGRIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECCCC--SSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCC--CcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence            5677778888999999999999997   577899999999988533  33333322   379999999999999999999


Q ss_pred             cCCCCcccceeEEEEeecc
Q psy573          101 NVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p  119 (216)
                      |.   .......|.|..+|
T Consensus        82 N~---~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           82 AY---NVTLPAKVHVISGP   97 (100)
T ss_dssp             SS---CCCEEEEEEEECCS
T ss_pred             CC---CeeEEEEEEEeCCC
Confidence            87   23456778887765

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.64  E-value=2.8e-15  Score=121.10  Aligned_cols=163  Identities=20%  Similarity=0.264  Sum_probs=110.9

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc-CCCCCceEEEEEEcCCCCcccceeEEEE--
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-RKTDDGRYQCVVKNVAGTRESTDAVLRV--  115 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v--  115 (216)
                      +..+.|.|.+ .+.|.+.+.|.++|..+.....        ..+.|..+ .....+.|.|.+.+..|......+.+..  
T Consensus        91 ~g~l~v~c~~-~g~P~p~i~W~k~g~~~~~~~~--------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~  161 (731)
T 2v5y_A           91 PGLLNVYVKV-NNGPLGNPIWNISGDPTRTWNR--------AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP  161 (731)
T ss_dssp             SEEEEEEEEE-TTCCCCSEEEEECCCCCSSCEE--------EEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSC
T ss_pred             cceEEEEEec-CCCCccceeEEEeCCcCCceeE--------EEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecc
Confidence            3478999998 7889999999999876522111        12444433 2222356777555554433222222222  


Q ss_pred             -eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEE-Ee--eCCccCCCCCeeeec----CCeEEEecCCCCCCeEEEE
Q psy573          116 -LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVH-WK--RLGSAMPEDRMSVLP----SRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       116 -~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C  187 (216)
                       ..+|.+. .+....+..|+.+.|.|.+.+.|.|.+. |+  +++..+.........    .+.|.|.++...|.|.|+|
T Consensus       162 ~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          162 CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             cccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEE
Confidence             1345554 4567889999999999999999999877 88  666655332211111    2579999999999999999


Q ss_pred             EEEcCCcc-eEEEEEEEEEecceee
Q psy573          188 EAENAVGK-ISASATLTVQSKYLKV  211 (216)
Q Consensus       188 ~~~n~~~~-~~~~~~l~v~~~p~~~  211 (216)
                      .+.|..|. .+..+.|.|..+|.+.
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~  265 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPI  265 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBS
T ss_pred             EEECCCCCcceeeEEEEEecCCCCC
Confidence            99999998 7777888888877653

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.63  E-value=1.5e-15  Score=93.36  Aligned_cols=101  Identities=20%  Similarity=0.356  Sum_probs=66.1

Q ss_pred             ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceE
Q psy573           16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   95 (216)
                      ++|.+.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... ......+..|.|.+++.+|+|.|
T Consensus         3 ~~v~~~~-~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y   79 (108)
T 3kvq_A            3 LTVLERV-APTITGNLENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSG-IVLKDGNRNLTIRRVRKEDEGLY   79 (108)
T ss_dssp             ---------CCCBSCCCCEEEETTCCEEEECBC-C----CCEEEEESSSBCCCBTT-EEEETTTTEEEECSCCGGGCEEE
T ss_pred             eeECccC-CCceecCCCCeEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEcccCCC-eEEeCCCcEEEEeecCcccCEEE
Confidence            3444433 5788888888999999999999998 7788889999999887743222 22233457899999999999999


Q ss_pred             EEEEEcCCCCcccceeEEEEeecce
Q psy573           96 QCVVKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        96 ~C~~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      +|.+.|..|.. ...+.|.|..+|.
T Consensus        80 ~C~a~n~~g~~-~~~~~l~V~~~~~  103 (108)
T 3kvq_A           80 TCQACSVLGCA-KVEAFFIIEGAQE  103 (108)
T ss_dssp             EEEEC----CE-EEEEEEEEEC---
T ss_pred             EEEEEeCCCce-EEEEEEEEeCCCc
Confidence            99999987765 4456777776553

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.63  E-value=2.1e-15  Score=91.87  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=66.2

Q ss_pred             eCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee---e--ec----CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          131 SAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS---V--LP----SRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~---~--~~----~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ..++.+.|.|.+.|.|.|.+.|++++..+......   .  ..    .+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            45778999999999999999999999887655321   1  11    234999999999999999999999999999999


Q ss_pred             EEEEecce
Q psy573          202 LTVQSKYL  209 (216)
Q Consensus       202 l~v~~~p~  209 (216)
                      |.|.+.|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            99988774

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.63  E-value=2.6e-15  Score=90.81  Aligned_cols=90  Identities=27%  Similarity=0.492  Sum_probs=70.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... .++....+.   .|.|.+++.+|+|.|+|.+.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQ-RRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBT-TEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCC-CEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            5788888888999999999999998 778889999999999875332 333333222   69999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..+.. ...+.|.|.
T Consensus        83 N~~g~~-~~~~~l~V~   97 (99)
T 1u2h_A           83 NEYGAR-QCEARLEVR   97 (99)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ECCCce-eEEEEEEEE
Confidence            987764 344566554

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=91.26  Aligned_cols=88  Identities=24%  Similarity=0.413  Sum_probs=71.5

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+.+..+.+|+.+.|.|.+  .|.+.+.|+|++..+... +......   ..|.|.++..+|+|.|+|.+.|. 
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-   83 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-   83 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence            3455666778899999999999999  788899999999988643 4444333   36999999999999999999998 


Q ss_pred             cceEEEEEEEEEecce
Q psy573          194 GKISASATLTVQSKYL  209 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~  209 (216)
                       ..+.++.|.|.++|.
T Consensus        84 -~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 -NVTLPAKVHVISGPS   98 (100)
T ss_dssp             -CCCEEEEEEEECCSC
T ss_pred             -CeeEEEEEEEeCCCC
Confidence             556778888888774

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=9.8e-15  Score=87.92  Aligned_cols=86  Identities=19%  Similarity=0.290  Sum_probs=71.3

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccCCCC-Ceee-ecCC--eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMPED-RMSV-LPSR--SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~-~~~~-~~~~--~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +...+....+.+|+.+.|.|.+.+. |.+.+.|++++..+... +... ...+  .|.|.++..+|.|.|+|.+.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            3445677889999999999999997 89999999999877643 3332 2333  7999999999999999999999999


Q ss_pred             eEEEEEEEEEe
Q psy573          196 ISASATLTVQS  206 (216)
Q Consensus       196 ~~~~~~l~v~~  206 (216)
                      ....+.|.|.+
T Consensus        84 ~~~~~~l~V~~   94 (97)
T 2bk8_A           84 DSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEETT
T ss_pred             EeEEEEEEEEe
Confidence            98888888864

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.62  E-value=7.4e-15  Score=90.28  Aligned_cols=87  Identities=22%  Similarity=0.311  Sum_probs=68.4

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccC----CCCCeeee---------cCCeEEEecCCCCCC
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAM----PEDRMSVL---------PSRSLQLSDVRLEDG  182 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~----~~~~~~~~---------~~~~l~i~~~~~~d~  182 (216)
                      |.+...+....+.+|+.+.|.|.+.+.|.   |.+.|+|++...    ...+....         ....|.|.+++.+|+
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence            45556677788999999999999999988   999999976211    11122211         135799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEE
Q psy573          183 GEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      |.|+|.+.|..|..+..+.|.|.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           85 GSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999998886

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.62  E-value=4.6e-15  Score=90.37  Aligned_cols=92  Identities=23%  Similarity=0.334  Sum_probs=72.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............ ...|.|.++..+|+|.|+|.+.|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            5788888888999999999999998 78899999999999988543322222221 237999999999999999999998


Q ss_pred             CCCcccceeEEEEee
Q psy573          103 AGTRESTDAVLRVLV  117 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~  117 (216)
                      .|.. ...+.|.|..
T Consensus        87 ~G~~-~~~~~l~V~~  100 (103)
T 3qp3_A           87 KGEA-SDYATLDVTG  100 (103)
T ss_dssp             TEEE-EEEEEEEEEC
T ss_pred             CCcE-EEEEEEEEEC
Confidence            7765 4456666654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=9e-16  Score=94.70  Aligned_cols=95  Identities=27%  Similarity=0.542  Sum_probs=75.5

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+............+  ..|.|.+++.+|+|.|+|.+.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            36788888888999999999999998 788889999999988775433333333333  389999999999999999999


Q ss_pred             cCCCCcccceeEEEEeecc
Q psy573          101 NVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p  119 (216)
                      |..+.. ...+.|.|..+|
T Consensus        87 n~~g~~-~~~~~l~V~~~p  104 (110)
T 2dm3_A           87 NRAGQN-SFSLELVVAAKE  104 (110)
T ss_dssp             CSSCEE-EECCEEEEECCC
T ss_pred             CCCCEE-EEEEEEEEeCCC
Confidence            988764 556777777654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.61  E-value=1.2e-15  Score=93.52  Aligned_cols=89  Identities=34%  Similarity=0.559  Sum_probs=74.6

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +.....   ...|.|.++..+|+|.|+|.+.|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            3466677788889999999999999999999999999999877543 333322   367999999999999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy573          193 VGKISASATLTVQ  205 (216)
Q Consensus       193 ~~~~~~~~~l~v~  205 (216)
                      .|.....+.|.|.
T Consensus        93 ~G~~~~~~~l~V~  105 (106)
T 1nct_A           93 EGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCBCCEEEEEEEC
T ss_pred             CCeEEEEEEEEEE
Confidence            9998888888774

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.61  E-value=3.9e-15  Score=97.48  Aligned_cols=99  Identities=23%  Similarity=0.397  Sum_probs=74.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.||+++..+............+  ..|.|.+++..|+|.|+|.+.|
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  119 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN  119 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEE
Confidence            5788888888999999999999998 778889999999999885432222222222  4899999999999999999999


Q ss_pred             CCCCcccceeEEEEeecceEEeC
Q psy573          102 VAGTRESTDAVLRVLVKPYIIRG  124 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p~~~~~  124 (216)
                      ..|.. ...+.|.|..+|.....
T Consensus       120 ~~G~~-~~~~~l~V~~~p~~~~~  141 (154)
T 1fhg_A          120 SLGEA-TCTAELLVETMGKEGEG  141 (154)
T ss_dssp             TTEEE-EEEEEEEEECC------
T ss_pred             CCCeE-EEEEEEEEeCcCcCCCC
Confidence            88764 55678888877755433

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.61  E-value=3.5e-15  Score=93.16  Aligned_cols=78  Identities=23%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-e--e--------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-V--L--------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~--~--------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      .+..+.|.|.+.|.|.|.|.|+|+|..+...... .  .        ..+.|.|.++...|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            5678999999999999999999999988764321 1  1        125799999999999999999999999999999


Q ss_pred             EEEEEecce
Q psy573          201 TLTVQSKYL  209 (216)
Q Consensus       201 ~l~v~~~p~  209 (216)
                      .|.|...|.
T Consensus        94 ~l~v~~~P~  102 (126)
T 1he7_A           94 MAAFMDNPF  102 (126)
T ss_dssp             EECCCSCTT
T ss_pred             EEEEEcCCC
Confidence            998887664

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5.8e-15  Score=91.05  Aligned_cols=93  Identities=24%  Similarity=0.377  Sum_probs=73.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--cCc--EEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGT--NLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... .++...  .++  .|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKS-DHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTC-SSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCC-CeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            5777778888899999999999998 788889999999998875322 233332  233  6999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|..+.. ...+.|.|...|
T Consensus        86 ~N~~g~~-~~~~~l~V~~~~  104 (110)
T 2dm2_A           86 ANPQGRI-SCTGRLMVQAVN  104 (110)
T ss_dssp             ECTTCCE-EECCCEEEECCS
T ss_pred             EECCCeE-EEEEEEEEECCC
Confidence            9988875 455677776554

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.8e-15  Score=90.11  Aligned_cols=83  Identities=18%  Similarity=0.412  Sum_probs=69.2

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      ....+.+|+.+.|.|.+.+.| +.+.|++++..+............|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   89 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS   89 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBC
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEe
Confidence            345678899999999998876 7999999998876544333346789999999999999999999999998888888887


Q ss_pred             ecce
Q psy573          206 SKYL  209 (216)
Q Consensus       206 ~~p~  209 (216)
                      ..|.
T Consensus        90 ~~~~   93 (99)
T 2cr3_A           90 DALP   93 (99)
T ss_dssp             SCCS
T ss_pred             cCCC
Confidence            6553

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=91.30  Aligned_cols=89  Identities=31%  Similarity=0.565  Sum_probs=70.0

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  ..........|.|.++..+|+|.|+|.+.|.
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEE-EEESCCCCEEEESSSBCSSC--CCEEETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEE-eeeCCCeEEEEECCEECccc--ceEeeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            35788888888999999999999998 77888999999998877422  2222333468999999999999999999998


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .+.. ...+.|.|
T Consensus        87 ~g~~-~~~~~l~V   98 (99)
T 2yr3_A           87 LGQV-SCSAWVTV   98 (99)
T ss_dssp             SCEE-EEECCEEE
T ss_pred             CCeE-EEEEEEEE
Confidence            8764 33444444

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=86.38  Aligned_cols=83  Identities=18%  Similarity=0.360  Sum_probs=68.4

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE-
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS-  197 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~-  197 (216)
                      +.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     ....|.|.++..+|+|.|+|.+.|..|... 
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s   78 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS   78 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-----CSSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-----CCCeEEECCCCHHhCEEEEEEEEcCCCCEEe
Confidence            45556677788999999999999999999999999999876543     246799999999999999999999999743 


Q ss_pred             EEEEEEEEe
Q psy573          198 ASATLTVQS  206 (216)
Q Consensus       198 ~~~~l~v~~  206 (216)
                      ..+.|.|.+
T Consensus        79 ~~~~l~V~~   87 (91)
T 3bfo_A           79 KKVEIIIDE   87 (91)
T ss_dssp             CCEEEEEC-
T ss_pred             eeEEEEEeh
Confidence            556666654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=4.4e-15  Score=92.80  Aligned_cols=87  Identities=22%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCC---CCcEEEEeeCCccC----CCCCeeee---------cCCeEEEecCCCCCCe
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGD---AVLTVHWKRLGSAM----PEDRMSVL---------PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~~~----~~~~~~~~---------~~~~l~i~~~~~~d~g  183 (216)
                      .+...|....+.+|+.+.|.|.+.+.   |.|.+.|+|+....    ...+..+.         ....|.|.++...|+|
T Consensus         9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG   88 (126)
T 2dav_A            9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   88 (126)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCE
Confidence            34556778899999999999999764   88999999974211    11222221         1367999999999999


Q ss_pred             EEEEEEEcCCcceEEEEEEEEEe
Q psy573          184 EYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       184 ~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .|+|.+.|..|..+.+++|.|.+
T Consensus        89 ~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           89 NYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999999998

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.60  E-value=7.9e-15  Score=87.98  Aligned_cols=83  Identities=20%  Similarity=0.372  Sum_probs=69.2

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +....+.+|+.+.|.|.+.+  .|.+.|++++..+............|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   85 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNV   85 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEE
Confidence            45567889999999999986  5799999999887655444445678999999999999999999999999999999999


Q ss_pred             Eecce
Q psy573          205 QSKYL  209 (216)
Q Consensus       205 ~~~p~  209 (216)
                      .+++.
T Consensus        86 ~~~~~   90 (95)
T 4hwu_A           86 TDAAE   90 (95)
T ss_dssp             CCC--
T ss_pred             eCCcc
Confidence            87654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.59  E-value=1.6e-14  Score=86.14  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .++.|...+.+..+.+|+.+.|.|.+ .+ +.+.+.||++|..+.......+.... ...|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            35778888889999999999999998 44 45789999999988543332222222 23799999999999999999976


Q ss_pred             CCCCcccceeEEEEe
Q psy573          102 VAGTRESTDAVLRVL  116 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~  116 (216)
                      .     ..+..|.|.
T Consensus        82 ~-----~~sa~L~V~   91 (93)
T 1waa_A           82 T-----KSAANLKVK   91 (93)
T ss_dssp             E-----EEEEEEEEE
T ss_pred             C-----cEEEEEEEE
Confidence            3     234455554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.59  E-value=3.4e-15  Score=102.64  Aligned_cols=111  Identities=43%  Similarity=0.861  Sum_probs=82.7

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|...++.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.... .+.. ..++.|.|.++..+|+
T Consensus       100 ~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~-~~~~-~~~~~L~i~~~~~~d~  177 (212)
T 2v9r_A          100 SHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD-ERIT-IRGGKLMITYTRKSDA  177 (212)
T ss_dssp             CCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS-TTEE-EETTEEEESSCCGGGC
T ss_pred             ecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc-ceEE-ccCCeEEEeeCCHhhC
Confidence            4566777777777777778888999999999999875677888999999999885332 2233 3456899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecceEEeCC
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP  125 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~  125 (216)
                      |.|+|.+.|..|...+..+.|.|..+|.+...|
T Consensus       178 G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          178 GKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             eeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            999999999887655556788998888766544

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.59  E-value=2.4e-14  Score=88.69  Aligned_cols=98  Identities=29%  Similarity=0.425  Sum_probs=77.5

Q ss_pred             cceeEEEEeec-ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCC---eEEEecCCCCCC
Q psy573          108 STDAVLRVLVK-PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR---SLQLSDVRLEDG  182 (216)
Q Consensus       108 ~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~---~l~i~~~~~~d~  182 (216)
                      ...+.|.|... |.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+.. .++....++   .|.|.++..+|.
T Consensus         8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~   85 (113)
T 2edh_A            8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDA   85 (113)
T ss_dssp             CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTC
T ss_pred             cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhC
Confidence            44556677644 477777788899999999999999765  68999999988764 344444333   799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEecceee
Q psy573          183 GEYVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |.|+|.+    +.....+.|.|.++|...
T Consensus        86 G~Y~C~a----~~~~~~~~l~V~~~p~~~  110 (113)
T 2edh_A           86 GEYLCMC----GKERTSAMLTVRAMPSGP  110 (113)
T ss_dssp             EEEEEEE----TTEEEEEEEEECCCCCSS
T ss_pred             EEEEEEe----CCCCEEEEEEEeCCCCCc
Confidence            9999999    777888899999877543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=3.8e-15  Score=93.11  Aligned_cols=96  Identities=19%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             EEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee-------cCCeEEEecCCCCCCe
Q psy573          112 VLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL-------PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       112 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~-------~~~~l~i~~~~~~d~g  183 (216)
                      .|.|..+|.+..... .  ...+...|.|.+.|.|.|.+.|++++..+.... ....       ..+.|.|.++..+|+|
T Consensus         2 ~L~V~~pP~i~~~~~-~--~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   78 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEE-P--ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   78 (118)
T ss_dssp             --CCCCCCCCCCCCC-C--CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEEEecCCceeccCC-C--eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCE
Confidence            355666676543322 1  123667899999999999999999998886543 2221       2457999999999999


Q ss_pred             EEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          184 EYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       184 ~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .|+|.+.|..|....++.|.|...|..
T Consensus        79 ~Y~C~a~N~~G~~~~~~~l~v~~~P~~  105 (118)
T 1wwc_A           79 NYTLIAKNPLGTANQTINGHFLKEPFP  105 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             EEEEEEECCCCeEeeEEEEEEccCCCc
Confidence            999999999999999999888877643

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.5e-15  Score=94.54  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=79.0

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--cCcEEEEcccCCCC
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNLAIQDSRKTD   91 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d   91 (216)
                      ..+.|.|...++.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.||+++..+...........  ....|.|.+++.+|
T Consensus         3 s~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (115)
T 2cr6_A            3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD   81 (115)
T ss_dssp             CCCCCCCCSSCCEEEECCCEEEEETTSCEECCCEE-ESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTT
T ss_pred             ccEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEE-cCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhh
Confidence            45678887776788888889999999999999998 6788889999999988854332222111  12479999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeecceEEeC
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG  124 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~  124 (216)
                      +|.|+|.+.    . ....+.|.|..+|.+...
T Consensus        82 ~G~Y~C~~g----~-~~~~~~L~V~~~p~~~~~  109 (115)
T 2cr6_A           82 SGTIYFEAG----D-QRASAALRVTEKPSVFSR  109 (115)
T ss_dssp             CEEEEEEET----T-EECCEEEEEECCSSCCSS
T ss_pred             CEEEEEEEC----C-eeEEEEEEEECCCceecc
Confidence            999999942    2 244578888887765443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=8.8e-15  Score=91.40  Aligned_cols=93  Identities=24%  Similarity=0.428  Sum_probs=70.7

Q ss_pred             ccceEe---cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRV---QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~---~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+.+   .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+. .....+.... ...|.|.++..+|+|.|+|.+
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEE-ccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            566654   2456889999999999998 788999999999999884 2222222222 235999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|..+.. ...+.|.|...|
T Consensus        99 ~N~~G~~-~~~~~l~V~~~P  117 (118)
T 2e7c_A           99 QIENMKD-TATIRIRVVEKA  117 (118)
T ss_dssp             ECSSCEE-CCEEEEEEECCC
T ss_pred             EeCCCeE-EEEEEEEEEcCC
Confidence            9988854 556777776654

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.59  E-value=6.1e-15  Score=91.41  Aligned_cols=97  Identities=26%  Similarity=0.414  Sum_probs=75.2

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc---EEEEcccCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRK   89 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~   89 (216)
                      +..+.|.|...+|.+...+....+.+|+.+.|.|.+ .+.  +.+.||+++..+..  ..++....++   .|.|.++..
T Consensus         8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~   82 (113)
T 2edh_A            8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKM--APVEWWKGHETLRD--GDRHSLRQDGARCELQIRGLVA   82 (113)
T ss_dssp             CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEE-SSC--CCCEEEESSSBCCC--SSSEEEEEETTEEEEEECSCCS
T ss_pred             cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEE-CCC--CcEEEEECCEECCC--CCcEEEEECCCEEEEEECCCCh
Confidence            556788888777889888889999999999999998 443  68999999987743  3344444333   799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      +|+|.|+|.+    +. ....+.|.|..+|
T Consensus        83 ~D~G~Y~C~a----~~-~~~~~~l~V~~~p  107 (113)
T 2edh_A           83 EDAGEYLCMC----GK-ERTSAMLTVRAMP  107 (113)
T ss_dssp             TTCEEEEEEE----TT-EEEEEEEEECCCC
T ss_pred             hhCEEEEEEe----CC-CCEEEEEEEeCCC
Confidence            9999999999    22 2445677777665

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=86.13  Aligned_cols=83  Identities=27%  Similarity=0.446  Sum_probs=67.8

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      +.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....        ...|.|.+++.+|+|.|.|.+.|..+
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~n~~g   74 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET--------KKLYMVPYVDLEHQGTYWCHVYNDRD   74 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEE-ECSSCCEEEEEETTEECTTCC--------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             eEEEECCCccEecCCCcEEEEEEe-ccCCCCEEEEEcCCeeCCcCC--------CCeEEECCCCHHhCEEEEEEEEcCCC
Confidence            556677778889999999999998 788889999999998874322        35799999999999999999999888


Q ss_pred             CcccceeEEEEe
Q psy573          105 TRESTDAVLRVL  116 (216)
Q Consensus       105 ~~~~~~~~l~v~  116 (216)
                      ...+..+.|.|.
T Consensus        75 ~~~s~~~~l~V~   86 (91)
T 3bfo_A           75 SQDSKKVEIIID   86 (91)
T ss_dssp             EEECCCEEEEEC
T ss_pred             CEEeeeEEEEEe
Confidence            654555666553

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=84.39  Aligned_cols=80  Identities=23%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      ...+.+.+|+.+.|.|.+ .+ |.+.+.|||+|..+...........+ ...|.|.++..+|+|.|.|.+.+.     ..
T Consensus         3 lt~v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~   75 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD-----SR   75 (84)
T ss_dssp             CCCEEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT-----CE
T ss_pred             CeEEEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE-----EE
Confidence            346789999999999998 44 88899999999998543332222222 237999999999999999997542     33


Q ss_pred             eeEEEEee
Q psy573          110 DAVLRVLV  117 (216)
Q Consensus       110 ~~~l~v~~  117 (216)
                      .+.|.|..
T Consensus        76 ~a~l~V~e   83 (84)
T 2lu7_A           76 IFLVSVEE   83 (84)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            45666643

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.58  E-value=2.9e-15  Score=89.57  Aligned_cols=88  Identities=23%  Similarity=0.329  Sum_probs=67.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.|...+....+.+|+.+.|.|.+ .+.|.+.+.|++++  ..+...  ...... ....|.|.++..+|+|.|+|.+.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEE-ECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEE-EEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            4666666778899999999999998 78899999999999  766332  222222 23579999999999999999999


Q ss_pred             cCCCCcccceeEEEE
Q psy573          101 NVAGTRESTDAVLRV  115 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v  115 (216)
                      |..|.. ...+.|.|
T Consensus        79 N~~G~~-~~~~~l~V   92 (93)
T 1wit_A           79 NELGED-EAIFEVIV   92 (93)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             cCCCeE-EEEEEEEE
Confidence            988754 44455544

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=87.20  Aligned_cols=89  Identities=28%  Similarity=0.520  Sum_probs=69.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .++....   ...|.|.++..+|+|.|.|.+.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   82 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQG--GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK   82 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSS--SSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCC--CCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence            5778888888999999999999998 77788999999999987443  3333332   2279999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..+.. ...+.|.|.
T Consensus        83 n~~g~~-~~~~~l~V~   97 (99)
T 3puc_A           83 NSAGSV-SSSCKLTIK   97 (99)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             eCCCcE-eEEEEEEEE
Confidence            987764 444555543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.58  E-value=2e-14  Score=103.15  Aligned_cols=174  Identities=15%  Similarity=0.166  Sum_probs=105.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +.+.|+...+.+|+.+.|+|.+ . .+.+ .+.|.-.-........+    .....|.+.++..+  |.|.|.+.... .
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~-~-c~~p~~~~~~t~l~~~~~~~~g----~~~~~~~l~~v~~~--~~y~C~~~~~~-~   72 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCST-S-CDQPKLLGIETPLPKKELLLPG----NNRKVYELSNVQED--SQPMCYSNCPD-G   72 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEE-C-CSSCSEEEEECSSCCCCCCCSC----SSEEEEEEESCCSC--CCCEEEEECSS-C
T ss_pred             eEEeCCccEEcCCCeEEEEEeC-C-CCCCccceEEecCCCcccccCC----CceEEEEEEecccC--CeEEEEEEcCC-c
Confidence            3456777889999999999998 3 3344 47885421111000000    00124777887743  46999997433 3


Q ss_pred             cccceeEEEEeecceE-EeCCCceeEeCCCcEEEEEEeCCC-CCc--EEEEeeCCccCCCCCeee-ecCCeEEEecCCCC
Q psy573          106 RESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECSVGGD-AVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLE  180 (216)
Q Consensus       106 ~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  180 (216)
                      .....+.+.|..+|.. .+.+....+.+|+.++|.|.+.+. |..  +|.|+|++..+....... ....++.+...+.+
T Consensus        73 ~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D  152 (291)
T 1mq8_A           73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH  152 (291)
T ss_dssp             EEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSC
T ss_pred             cEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeecc
Confidence            4456678888887743 333333458889999999999765 433  699999997654221000 01234666666666


Q ss_pred             CCeEEEEEEEcCCcc--------eEEEEEEEEEecce
Q psy573          181 DGGEYVCEAENAVGK--------ISASATLTVQSKYL  209 (216)
Q Consensus       181 d~g~y~C~~~n~~~~--------~~~~~~l~v~~~p~  209 (216)
                      +++.|+|.|.|..+.        .+....|.|..+|.
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~  189 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA  189 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEEEecCC
Confidence            677999999987552        34445666766653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.58  E-value=1.4e-14  Score=91.08  Aligned_cols=87  Identities=20%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             CceeEeCCCcEEEEEEeCCC--CCcEEEEeeCCccCC------CCCeee------ecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          126 KDTTVSAGSIIVFECSVGGD--AVLTVHWKRLGSAMP------EDRMSV------LPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~~~------~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ....+.+|+.+.|.|.+.+.  |.+.+.|++++..+.      ......      ...+.|.|.+++.+|+|.|+|.+.|
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            44578899999999999874  457899999887432      111111      1235799999999999999999999


Q ss_pred             CCcceEEEEEEEEEecceeee
Q psy573          192 AVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      ..|.....+.|.|.++|.+.+
T Consensus        96 ~~g~~~~~~~l~V~~~p~i~~  116 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEKPFVAF  116 (122)
T ss_dssp             SSCEEEEEEEEEEEEEECC--
T ss_pred             CCCceEEEEEEEEeccCeEEe
Confidence            999999999999999887654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7.5e-15  Score=89.56  Aligned_cols=95  Identities=15%  Similarity=0.206  Sum_probs=70.2

Q ss_pred             eEEeeccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEE
Q psy573           19 KIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        19 ~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~   96 (216)
                      +|...++.|...+.+..+.+|+.++|.|.+ .+.+. +.+.||+++..+.......+.... ...|.|.+++.+|+|.|+
T Consensus         3 ~V~~~p~~~~~~~~~~~v~~G~~v~l~C~v-~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (104)
T 2eny_A            3 SGSSGHVGITKRLKTMEVLEGESCSFECVL-SHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVV   81 (104)
T ss_dssp             CCCCCCCCCSBCCCCEEEESSCCEEEEEEC-SSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEE
T ss_pred             ccccCCCEEEecCCCcEEcCCCcEEEEEEE-cCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEE
Confidence            455566778888889999999999999998 55553 479999999887543333332222 237999999999999999


Q ss_pred             EEEEcCCCCcccceeEEEEeecc
Q psy573           97 CVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        97 C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      |.+.+.     .....|.|..+|
T Consensus        82 C~a~~~-----~~~a~L~V~~~p   99 (104)
T 2eny_A           82 FSVRGL-----TSKASLIVRERS   99 (104)
T ss_dssp             EEETTE-----EEEECEEEECCC
T ss_pred             EEECCe-----eEEEEEEEeCCC
Confidence            988542     345677777665

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=8.9e-15  Score=91.38  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=67.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCC---CCCCeeEEeeCCEE-eccccCceEEEe---------cCcEEEEcccCCCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGHP-IDFENSKRLRLV---------DGTNLAIQDSRKTD   91 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~~~~-~~~~~~~~~~~~---------~~~~l~i~~~~~~d   91 (216)
                      +.|...|.++.+.+|+.++|.|.+ .+   .|.|.|.|||++.. +......++.+.         ....|.|.++...|
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v-~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEE-eccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            457778889999999999999987 44   38899999997421 110111222221         13679999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEee
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      +|.|+|++.+..+.. ...+.|.|..
T Consensus        87 aG~Y~Cevsn~~g~~-~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFD-SCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEE-EECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcE-EEEEEEEEEe
Confidence            999999999987653 6678888887

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.57  E-value=2.8e-14  Score=87.53  Aligned_cols=92  Identities=22%  Similarity=0.362  Sum_probs=70.7

Q ss_pred             eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-C--------CCCCeeee----cCCeEEEecCCCCCC
Q psy573          116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA-M--------PEDRMSVL----PSRSLQLSDVRLEDG  182 (216)
Q Consensus       116 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~--------~~~~~~~~----~~~~l~i~~~~~~d~  182 (216)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.. +        ...+....    ....|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            3445555667788999999999999999999999999987641 1        12233322    245799999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          183 GEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      |.|+|.+.| .+.....+.|.|.++|
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            999999999 8888889999998765

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.57  E-value=7.2e-14  Score=84.25  Aligned_cols=80  Identities=28%  Similarity=0.469  Sum_probs=66.2

Q ss_pred             CCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++....... .....+.|.|.+++.+|+|.|.|.+.|..|.....+.|.
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   95 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH   95 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-eecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEE
Confidence            4556888999999999997 68899999999865443333 233467899999999999999999999999988888887


Q ss_pred             EE
Q psy573          204 VQ  205 (216)
Q Consensus       204 v~  205 (216)
                      |.
T Consensus        96 V~   97 (98)
T 1gl4_B           96 VQ   97 (98)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.57  E-value=5.1e-14  Score=94.76  Aligned_cols=161  Identities=16%  Similarity=0.194  Sum_probs=103.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..+.+.|+...+.+|+.+.|+|.+ .. +.+ .+.|...-......     .......+.|.+++ +|.+.|.|.+....
T Consensus         3 f~v~v~P~~~~V~~G~Sv~l~Cs~-~c-~~p~~~~~~t~l~~~~~~-----~g~~~~~~~ls~vs-~d~~~~~C~~~c~~   74 (196)
T 3bn3_B            3 FWADLQPRVAFVERGGSLWLNCST-NC-PRPERGGLETSLRRNGTQ-----RGLRWLARQLVDIR-EPETQPVCFFRCAR   74 (196)
T ss_dssp             SCEEEESSEEEEETTEEEEEEEEE-CC-SSCSEEEEECSSEEEEEE-----EETTEEEEEEEEEC-SSEECCEEEEEETT
T ss_pred             cEEEEcCCCcEEcCCCeEEEEEeC-CC-CCCCccEEEEccCCeeEc-----cccCceEEEEEEEc-cCCCceEEEEECCC
Confidence            355667777889999999999998 33 333 67775421111000     00111248889998 78787999977543


Q ss_pred             CCcccceeEEEEeecceE-EeCCCceeEeCCCcEEEEEEeCCC-CCc--EEEEeeCCccCCCCCeee-e-----cCCeEE
Q psy573          104 GTRESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECSVGGD-AVL--TVHWKRLGSAMPEDRMSV-L-----PSRSLQ  173 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~-~-----~~~~l~  173 (216)
                       ......+.|.|..+|.. .+.+....+.+|+.++|.|.+.+. |..  +|.|++++..+....... .     ...++.
T Consensus        75 -~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~  153 (196)
T 3bn3_B           75 -RTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTAT  153 (196)
T ss_dssp             -EEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEE
T ss_pred             -CceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEE
Confidence             44466788888887743 333443458899999999999765 543  489999987663211000 0     113455


Q ss_pred             EecCCCCCCeEEEEEEEcCCc
Q psy573          174 LSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       174 i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +.....++...|+|.|.+..+
T Consensus       154 ~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          154 VLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EECCGGGTTCEEEEEEEEECG
T ss_pred             EeeeeccCCCeEEEEEEccCC
Confidence            554454455599999998776

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.57  E-value=1.5e-14  Score=87.61  Aligned_cols=79  Identities=29%  Similarity=0.543  Sum_probs=65.2

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC----eee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~----~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....    ... .....|.|.++..+|+|.|+|.+.|..|.....+
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            34578899999999999999999999999998765321    122 2345899999999999999999999999988888


Q ss_pred             EEEE
Q psy573          201 TLTV  204 (216)
Q Consensus       201 ~l~v  204 (216)
                      .|.|
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.57  E-value=4.3e-14  Score=84.27  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS---RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ++.+...+.+..+.+|+.+.|.|.+.+ +.+.+.|+|++..+.. .+..+...   ..|.|.++..+|+|.|+|.+.|. 
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~-   82 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT-   82 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE-
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC-
Confidence            456677778889999999999999975 4578999999998864 34444322   37999999999999999999774 


Q ss_pred             cceEEEEEEEEEe
Q psy573          194 GKISASATLTVQS  206 (216)
Q Consensus       194 ~~~~~~~~l~v~~  206 (216)
                         ..+..|.|.+
T Consensus        83 ---~~sa~L~V~~   92 (93)
T 1waa_A           83 ---KSAANLKVKE   92 (93)
T ss_dssp             ---EEEEEEEEEC
T ss_pred             ---cEEEEEEEEc
Confidence               3566666654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=3.7e-15  Score=92.10  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCC---CCcEEEEeeCCcc-CC---CCCeeee---------cCCeEEEecCCCCCCe
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGD---AVLTVHWKRLGSA-MP---EDRMSVL---------PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~~-~~---~~~~~~~---------~~~~l~i~~~~~~d~g  183 (216)
                      .+...|....+.+|+.+.|.|.+.+.   |.|.|.|+|+... +.   ..+....         ....|.|.++...|+|
T Consensus        14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   93 (118)
T 2edn_A           14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRG   93 (118)
T ss_dssp             SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCS
T ss_pred             eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCE
Confidence            34455778899999999999999765   7899999997421 11   1122221         1367999999999999


Q ss_pred             EEEEEEEcCCcceEEEEEEEEEec
Q psy573          184 EYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       184 ~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .|+|.+.|..|..+..++|.|.++
T Consensus        94 ~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           94 YYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CEEEEEECSSCEEEEEECCEEECC
T ss_pred             EEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999874

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=90.72  Aligned_cols=100  Identities=29%  Similarity=0.518  Sum_probs=75.0

Q ss_pred             eeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc---CceEEEecCcEEEEc-----ccCC
Q psy573           18 LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVDGTNLAIQ-----DSRK   89 (216)
Q Consensus        18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~l~i~-----~~~~   89 (216)
                      |.+...+|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....   ........++.+.+.     +++.
T Consensus         3 l~~~~~pP~i~~~p~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~   81 (117)
T 2v9t_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR   81 (117)
T ss_dssp             CCCCCEEEEEEECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBC
T ss_pred             cccccCCCeeEcCCCCEEEcCCCcEEEEEEC-CccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCc
Confidence            3444557888888989999999999999998 788999999999998875332   112333444445444     4579


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK  118 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~  118 (216)
                      +|+|.|.|.+.|..|...+..+.+.+...
T Consensus        82 ~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           82 PDEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             SSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             CcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            99999999999999887777777776654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.57  E-value=2.2e-14  Score=88.11  Aligned_cols=91  Identities=21%  Similarity=0.261  Sum_probs=66.5

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCC---CeeEEeeCCEEecc-ccCceEEEe---------cCcEEEEcccCCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHPIDF-ENSKRLRLV---------DGTNLAIQDSRKT   90 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~-~~~~~~~~~---------~~~~l~i~~~~~~   90 (216)
                      .|.|...|..+.+.+|+.++|.|.+ .+.|.   +.+.||+++..... ....++...         ....|.|.+++.+
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEE-ECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEE-CCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4677778888999999999999998 67777   89999998732211 111222221         1357999999999


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEe
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      |+|.|+|.+.|..|.. ...+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFD-CSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             cCEEEEEEEecCCCce-EEEEEEEEe
Confidence            9999999999988765 445666553

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.56  E-value=1.1e-14  Score=87.44  Aligned_cols=87  Identities=28%  Similarity=0.444  Sum_probs=67.2

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+.| +.+.|++++..+..  ..++... ++.|.|.+++.+|+|.|.|.+.|.
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~g~p-p~i~W~k~g~~~~~--~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLVE--SNRTRIT-GEEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCE-ESSC-CEEEEEBTTBCCCC--CSSEEEC-SSEEEESSCCGGGSEEEEEEEEET
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEEC-CCCC-CceEEEECCEecCC--CCCEEEe-CCEEEECCCChHHCEEEEEEeccC
Confidence            35667677788899999999999998 5666 79999999987743  3344333 678999999999999999999997


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .|.. ...+.|.|
T Consensus        83 ~g~~-~~~~~l~V   94 (95)
T 2ckn_A           83 SGSD-TTYFSVNV   94 (95)
T ss_dssp             TEEE-EEEEEEEE
T ss_pred             CCcE-EEEEEEEE
Confidence            7653 33444443

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.55  E-value=4.6e-15  Score=90.87  Aligned_cols=89  Identities=26%  Similarity=0.560  Sum_probs=70.8

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.+...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ..++....   +..|.|.+++.+|+|.|+|.+.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLST--SARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTT--CSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCC--CCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            5678888889999999999999998 7888899999999987743  23333332   3589999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..|.. ...+.|.|.
T Consensus        91 N~~G~~-~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQ-EAEFTLTIQ  105 (106)
T ss_dssp             CSSCBC-CEEEEEEEC
T ss_pred             eCCCeE-EEEEEEEEE
Confidence            988764 445566553

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.8e-15  Score=91.57  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             eeccceEecccceEEecCCcEEEEeeCCCC---CCCCeeEEeeCCEE-eccccCceEEEe---c------CcEEEEcccC
Q psy573           22 MLREEFRVQPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGHP-IDFENSKRLRLV---D------GTNLAIQDSR   88 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~~~~-~~~~~~~~~~~~---~------~~~l~i~~~~   88 (216)
                      ...+.|...|.++.+.+|+.++|.|.+ .+   .|.|.|.|||++.. +......++.+.   .      +..|.|.++.
T Consensus        10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v-~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   88 (118)
T 2edn_A           10 EPTGVFLKKPDSVSVETGKDAVVVAKV-NGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVV   88 (118)
T ss_dssp             CCSSSCSBCCCCCEEETTSCEECCEEE-ETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCC
T ss_pred             CCcceEEECCCCeEEeCCCCEEEEEEE-eccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCC
Confidence            344667778889999999999999998 44   37899999997421 111111122221   1      3679999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      ..|+|.|+|++.+..+. .+..+.|.|..
T Consensus        89 ~~D~G~Y~Cevsn~~g~-~s~~~~L~V~~  116 (118)
T 2edn_A           89 LGDRGYYRLEVKAKDTC-DSCGFNIDVEA  116 (118)
T ss_dssp             TTTCSCEEEEEECSSCE-EEEEECCEEEC
T ss_pred             hhhCEEEEEEEEEcCCc-EEEEEEEEEEc
Confidence            99999999999998885 36667777765

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.55  E-value=3.7e-14  Score=88.42  Aligned_cols=92  Identities=33%  Similarity=0.507  Sum_probs=69.3

Q ss_pred             eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------CeeeecCCeEEEe-----cCCCCCCeE
Q psy573          116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLS-----DVRLEDGGE  184 (216)
Q Consensus       116 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~l~i~-----~~~~~d~g~  184 (216)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+...      ......++.+.+.     ++..+|.|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            45677777788889999999999999999999999999999876533      1223334444444     457899999


Q ss_pred             EEEEEEcCCcce-EEEEEEEEEec
Q psy573          185 YVCEAENAVGKI-SASATLTVQSK  207 (216)
Q Consensus       185 y~C~~~n~~~~~-~~~~~l~v~~~  207 (216)
                      |.|.+.|..|.. ...+.|.+...
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEEEeCccceEeeeEEEEhhhh
Confidence            999999999984 44566666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=2.3e-14  Score=106.54  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc--ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF--ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      .+..+.+.+|+.+.|.|.+ .+ |.+.+.|++++..+..  ....++.. .++.|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus       252 ~~~~v~v~~G~~~~l~C~~-~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-  327 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDT-KQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNE-  327 (361)
T ss_dssp             CCCCCEEETTCCEEECCCC-SS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEE-
T ss_pred             cccCceecCCCeEEEEeEe-eC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCcc-
Confidence            4456789999999999998 66 8899999997765422  22234555 67789999999999999999999987654 


Q ss_pred             cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEE
Q psy573          108 STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVH  151 (216)
Q Consensus       108 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~  151 (216)
                      ...+.+.|...+           ..|+.+.|.|.+.|.|.|.|.
T Consensus       328 ~~~~~l~V~~~~-----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          328 TLSVELKVYNFT-----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEESSC-----------CC-------------------
T ss_pred             EEEEEEEEEeee-----------ccCCceEEEEEeCCCCCCccc
Confidence            445666664322           567889999999999988763

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=2.6e-14  Score=83.40  Aligned_cols=77  Identities=21%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ....+.+|+.+.|.|.+.+ |.|.+.|+|++..+... +......   ..|.|.++..+|+|.|+|.|.|    .+.++.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            4567889999999999965 88899999999988654 3333322   3699999999999999998744    466677


Q ss_pred             EEEEec
Q psy573          202 LTVQSK  207 (216)
Q Consensus       202 l~v~~~  207 (216)
                      |.|.+|
T Consensus        79 l~V~eP   84 (84)
T 2lu7_A           79 VSVEEP   84 (84)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            777653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=4e-14  Score=86.21  Aligned_cols=88  Identities=24%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +.|...+....+.+|+.+.|.|.+ .+ +.+.+.||+++..+......++....+   ..|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~~-~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            8 IMVTKQLEDTTAYCGERVELECEV-SE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             CCCSBCCCCEEEETTEEEEEEEEC-SS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             ceeeccCCCEEEECCCCEEEEEEe-cC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            346667788899999999999998 55 668999999999885443223333322   5799999999999999999976


Q ss_pred             CCCCcccceeEEEEeecc
Q psy573          102 VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p  119 (216)
                           ......|.|..+|
T Consensus        86 -----~~~~~~l~V~~~p   98 (103)
T 1x44_A           86 -----GQSSAKLSVDLKS   98 (103)
T ss_dssp             -----EEEEEEEEEECCC
T ss_pred             -----CcEEEEEEEeCCC
Confidence                 2445667776654

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=90.51  Aligned_cols=97  Identities=27%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             eEEEEeecc-eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee----cCCeEEEecCCCCCCeE
Q psy573          111 AVLRVLVKP-YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL----PSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       111 ~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~----~~~~l~i~~~~~~d~g~  184 (216)
                      ..|.|..+| .+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... ....    ....|.|.++..+|+|.
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   84 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT   84 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEE
Confidence            345555554 56677788899999999999999999999999999998775432 2221    12479999999999999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEecceee
Q psy573          185 YVCEAENAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       185 y~C~~~n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |+|.+    |.....+.|.|.++|.+.
T Consensus        85 Y~C~~----g~~~~~~~L~V~~~p~~~  107 (115)
T 2cr6_A           85 IYFEA----GDQRASAALRVTEKPSVF  107 (115)
T ss_dssp             EEEEE----TTEECCEEEEEECCSSCC
T ss_pred             EEEEE----CCeeEEEEEEEECCCcee
Confidence            99993    667777889999887644

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-14  Score=86.47  Aligned_cols=84  Identities=26%  Similarity=0.563  Sum_probs=66.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ++.+...|....+.+|+.++|.|.+ .+.|.+.+.||+++..+...        .+..|.|.+++.+|+|.|+|.+.|..
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~   80 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEV-PAQPSPQIHWMKDGVPLPLP--------PSPVLILPEIGPQDQGTYSCVATHSS   80 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCC-SSCSSCCCCCEESSSBCSSC--------CCSEEEEESCCTTTCEEEECEECCSS
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEE-ccCCCCEEEEEECCEECcCC--------CCCEEEECCCCcccCEEEEEEEEeCC
Confidence            4677778888889999999999998 77888899999998876322        24689999999999999999999854


Q ss_pred             CC-cccceeEEEEe
Q psy573          104 GT-RESTDAVLRVL  116 (216)
Q Consensus       104 ~~-~~~~~~~l~v~  116 (216)
                      +. ..+..+.|.|.
T Consensus        81 ~~~~~s~~~~v~V~   94 (96)
T 2ens_A           81 HGPQESRAVSISII   94 (96)
T ss_dssp             CCCEECCCEEEEEC
T ss_pred             CCcEEEEEEEEEEe
Confidence            33 33444555543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=6.2e-14  Score=85.46  Aligned_cols=89  Identities=15%  Similarity=0.308  Sum_probs=67.2

Q ss_pred             ccceEecccc---eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKS---QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~---~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+...|..   ..+.+|+.++|.|.+ .+.+.+ +.||+++..+.......+.... ...|.|.+++.+|+|.|+|.+
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~-~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEEC-SSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEe-cCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            4666667766   789999999999998 677777 9999999988544333333222 247999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|..     ..+.|.|..+|
T Consensus        85 ~n~~-----~~~~l~V~~~P   99 (104)
T 2e6p_A           85 EGVS-----AFFGVTVQDPS   99 (104)
T ss_dssp             SSCC-----CCEEEEEECCC
T ss_pred             CCce-----EEEEEEEcCCC
Confidence            8752     24567776655

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.54  E-value=4.8e-16  Score=97.80  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             ceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCC---CCeeee----c---CCeEEEecC
Q psy573          109 TDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPE---DRMSVL----P---SRSLQLSDV  177 (216)
Q Consensus       109 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~---~~~~~~----~---~~~l~i~~~  177 (216)
                      ..+.|.|..+|.+.. +....+.+|+.+.|.|.+.+.|.|. +.|++++..+..   .++...    .   ...|.|.++
T Consensus         5 ~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (122)
T 2cry_A            5 SSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI   83 (122)
T ss_dssp             CCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred             eEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence            346677888888877 7777899999999999999999987 999999887653   333331    1   237999999


Q ss_pred             CCCCC-eEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          178 RLEDG-GEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       178 ~~~d~-g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ..+|. |.|+|.+.|..|.....+.|.|.+++
T Consensus        84 ~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           84 VRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             CHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             ChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence            99998 99999999999999999988888654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.53  E-value=1.3e-13  Score=82.90  Aligned_cols=86  Identities=22%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCCEEeccccCceEEE-ecCc--EEEEcccCCCCCceEEEEEEcC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPIDFENSKRLRL-VDGT--NLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~-~~~~--~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +...+.+..+.+|+.+.|.|.+ .+. |.+.+.||+++..+...  .++.. ..++  .|.|.+++.+|+|.|.|.+.|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLENS--EKYEITYEDGVAILYVKDITKLDDGTYRCKVVND   80 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCSS--SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeccCcCEEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcCC--CCEEEEEcCCeEEEEEecCChhhCeEEEEEEECC
Confidence            3445667889999999999998 665 88899999999987433  23332 2233  7999999999999999999998


Q ss_pred             CCCcccceeEEEEe
Q psy573          103 AGTRESTDAVLRVL  116 (216)
Q Consensus       103 ~~~~~~~~~~l~v~  116 (216)
                      .+.. ...+.|.|.
T Consensus        81 ~g~~-~~~~~l~V~   93 (97)
T 2bk8_A           81 YGED-SSYAELFVK   93 (97)
T ss_dssp             SCEE-EEEEEEEET
T ss_pred             CCeE-eEEEEEEEE
Confidence            8765 334555554

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=5.5e-14  Score=85.56  Aligned_cols=86  Identities=22%  Similarity=0.287  Sum_probs=68.2

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecC---CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPS---RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....   +.....   ..|.|.++..+|+|.|+|.+.|   
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---   85 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   85 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC---
Confidence            455667788999999999999977 778999999998875442   233322   5799999999999999999977   


Q ss_pred             ceEEEEEEEEEecceee
Q psy573          195 KISASATLTVQSKYLKV  211 (216)
Q Consensus       195 ~~~~~~~l~v~~~p~~~  211 (216)
                       ....+.|.|..+|...
T Consensus        86 -~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           86 -GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             -EEEEEEEEEECCCSCC
T ss_pred             -CcEEEEEEEeCCCCCC
Confidence             5677888888877543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=4.1e-14  Score=86.13  Aligned_cols=89  Identities=28%  Similarity=0.447  Sum_probs=71.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+... +......   ..|.|.++..+|+|.|+|.+.|  
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--   84 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--   84 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--
Confidence            456666777889999999999999987 77889999999887543 3333322   3699999999999999999988  


Q ss_pred             cceEEEEEEEEEecceee
Q psy573          194 GKISASATLTVQSKYLKV  211 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~~~  211 (216)
                        ....+.|.|..+|..+
T Consensus        85 --~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           85 --SKSTASLHVEEKASGP  100 (103)
T ss_dssp             --CEEEEEEEECCCSSSS
T ss_pred             --CCcEEEEEEeCCCCCC
Confidence              4677888888877543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.52  E-value=3.5e-14  Score=96.04  Aligned_cols=102  Identities=28%  Similarity=0.525  Sum_probs=80.4

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|... |.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.  ...+.....++.|.|.++..+|+|
T Consensus        91 ~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G  166 (192)
T 2iep_A           91 SCGALQVKMK-PKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALR--ENSRIAVLESGSLRIHNVQKEDAG  166 (192)
T ss_dssp             EEEEEEEEEE-EEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECC--CCSSEEECTTSCEEESSCCGGGCE
T ss_pred             eEEEEEEEeC-CccccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEcc--CCCcEEEecCCcEEEecCChhhCE
Confidence            3456666554 667777778889999999999998 777888999999999874  334455666778999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecc
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|+|.+.|..+...+..+.|.|..+|
T Consensus       167 ~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          167 QYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999887665666777777654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.52  E-value=5.2e-14  Score=99.54  Aligned_cols=115  Identities=19%  Similarity=0.269  Sum_probs=62.8

Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-----CcEEEEeeCC--ccC
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-----VLTVHWKRLG--SAM  159 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~--~~~  159 (216)
                      ++.+|+|.|.|.+.   +.. .....+.+..++.+...+....+.+|+.+.|.|.+.+.+     .+.+.|++++  ..+
T Consensus        11 v~~~dsg~Y~C~a~---g~~-~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYS-FTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hhh-hhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            68899999999998   222 122334444466676667788999999999999998887     4889999853  211


Q ss_pred             -------------CCCCeeeec---CCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEE
Q psy573          160 -------------PEDRMSVLP---SRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQ  205 (216)
Q Consensus       160 -------------~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v~  205 (216)
                                   ...++....   ...|.|.+++.+|+|.|.|.+.|..+.. .....|.|.
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence                         012333321   2379999999999999999999886542 222345555

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.52  E-value=6.5e-14  Score=83.01  Aligned_cols=65  Identities=18%  Similarity=0.446  Sum_probs=50.8

Q ss_pred             EEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEEEc
Q psy573           35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .+.+|+.+.|.|.+ .+ |.+.+.|||+|..+...........++ ..|.|.++..+|+|.|+|.+.|
T Consensus        17 ~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A           17 HAITSECVMLACEV-DR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             ECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             EEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            45689999999998 44 778999999999885544333333322 3799999999999999999865

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=8.5e-15  Score=88.88  Aligned_cols=91  Identities=26%  Similarity=0.315  Sum_probs=67.4

Q ss_pred             EeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEec-C--cEEEEcccCCCCCceE
Q psy573           21 EMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVD-G--TNLAIQDSRKTDDGRY   95 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~-~--~~l~i~~~~~~d~g~y   95 (216)
                      ...++.|...+....+.+|+.+.|.|.+ .+.+ +.+.||+++..+......  ++.... +  ..|.|.++..+|+|.|
T Consensus         5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~-~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   82 (101)
T 2edk_A            5 SSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY   82 (101)
T ss_dssp             CCCCCCEEECCCCEEEESSCCCBCCEEE-SCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBE
T ss_pred             ccCCCEEEecCCceEEcCCCCEEEEEEE-eCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEE
Confidence            3456778888888999999999999998 6666 899999999887543321  223322 2  3699999999999999


Q ss_pred             EEEEEcCCCCcccceeEEEEeec
Q psy573           96 QCVVKNVAGTRESTDAVLRVLVK  118 (216)
Q Consensus        96 ~C~~~~~~~~~~~~~~~l~v~~~  118 (216)
                      +|.+.+.     .....|.|..+
T Consensus        83 ~C~a~n~-----~~~~~l~V~~~  100 (101)
T 2edk_A           83 QVITNGG-----QCEAELIVEEK  100 (101)
T ss_dssp             EEECSSC-----EECCBEEEECC
T ss_pred             EEEEcCC-----cEEEEEEEeCC
Confidence            9998762     23345666544

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.52  E-value=9.2e-14  Score=85.67  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=70.2

Q ss_pred             eecceEEeCCCceeEeCCCcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe----eee-c-------CCeEEEecCCCCC
Q psy573          116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM----SVL-P-------SRSLQLSDVRLED  181 (216)
Q Consensus       116 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~----~~~-~-------~~~l~i~~~~~~d  181 (216)
                      ..+|.+...+....+..|+.+.|.|.+.+.  +.+.+.|++++..+.....    ... .       ...|.|.++..+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            456777777888899999999999999744  4689999999988765431    111 1       3579999999999


Q ss_pred             CeEEEEEEEcCCcc-eEEEEEEEE
Q psy573          182 GGEYVCEAENAVGK-ISASATLTV  204 (216)
Q Consensus       182 ~g~y~C~~~n~~~~-~~~~~~l~v  204 (216)
                      .|.|+|.+.|..|. .+..+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999999988 456666665

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.52  E-value=8e-14  Score=85.50  Aligned_cols=93  Identities=24%  Similarity=0.450  Sum_probs=67.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-Eecc-----ccCceEEEe----cCcEEEEcccCCCCCc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PIDF-----ENSKRLRLV----DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-~~~~-----~~~~~~~~~----~~~~l~i~~~~~~d~g   93 (216)
                      +|.+...+.+..+.+|+.++|.|.+ .+.+.+.+.|++++. .+..     ....++...    .+.+|.|.+++.+|+|
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEE-SSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEE-cCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            4667778889999999999999998 677788999999775 2211     112244332    3457999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecc
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|+|.+.+ .+.. .....|.|..+|
T Consensus        85 ~Y~C~~~n-~~~~-~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVK-TSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCE-EEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCc-EEEEEEEEEcCC
Confidence            99999998 5443 556677776554

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=85.92  Aligned_cols=88  Identities=24%  Similarity=0.335  Sum_probs=68.1

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+ +.+.+.||+++..+....  ++....+   ..|.|.++..+|+|.|+|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~-~~~~v~W~k~g~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCEL-SR-AGTPVHWLKDRKAIRKSQ--KYDVVCEGTMAMLVIRGASLKDAGEYTCEV   82 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEE-SS-SSCCCCEEESSCBCCCSS--SEEEEEETTEEEEEESSCCTTTCSEEEEEC
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEE-eC-CCCcEEEEECCEEccCCC--CEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence            46777778888999999999999998 44 777899999998874333  3333322   36999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|     ....+.|.|..+|
T Consensus        83 ~n-----~~~~~~l~V~~~p   97 (103)
T 2edf_A           83 EA-----SKSTASLHVEEKA   97 (103)
T ss_dssp             SS-----CEEEEEEEECCCS
T ss_pred             cc-----CCcEEEEEEeCCC
Confidence            87     2445677776655

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.51  E-value=5e-14  Score=85.23  Aligned_cols=90  Identities=27%  Similarity=0.413  Sum_probs=66.4

Q ss_pred             ccceEecc----cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEecCcEEEEcccCCCCCceEEE
Q psy573           24 REEFRVQP----KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVDGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        24 ~~~~~~~~----~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C   97 (216)
                      +|.|...+    ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......  ......+..|.|.+++.+|+|.|+|
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   82 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   82 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEc-cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence            45555433    35778899999999998 77888999999999987543221  1222334589999999999999999


Q ss_pred             EEEcCCCCcccceeEEEE
Q psy573           98 VVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v  115 (216)
                      .+.|..|.. ...+.|.|
T Consensus        83 ~a~N~~g~~-~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSI-NHTYHLDV   99 (100)
T ss_dssp             EEEETTEEE-EEEEEEEE
T ss_pred             EEEeCCCEE-EEEEEEEE
Confidence            999987764 34445544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=6.5e-14  Score=85.70  Aligned_cols=89  Identities=26%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .+|.|...+.+..+.+|+.+.|.|.+ .+.+.+ +.||+++..+.......+.... ...|.|.++..+|+|.|+|.+.|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEE-SCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEE-cCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            35778888889999999999999998 566666 9999999887543332222222 14799999999999999999998


Q ss_pred             CCCCcccceeEEEEe
Q psy573          102 VAGTRESTDAVLRVL  116 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~  116 (216)
                      ...   .....|.|.
T Consensus        85 ~~~---~~~~~l~V~   96 (106)
T 2dlt_A           85 YAL---SLSAKLNFL   96 (106)
T ss_dssp             SCC---CCCBCEEEE
T ss_pred             CCc---eEEEEEEEE
Confidence            722   234455554

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.51  E-value=3e-13  Score=91.81  Aligned_cols=95  Identities=23%  Similarity=0.325  Sum_probs=78.6

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee--cCC--eEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL--PSR--SLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~--~~~--~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  +....  ..+  .|.|.++..+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            3567777778889999999999999999999999999999887543  22222  233  79999999999999999999


Q ss_pred             cCCcceEEEEEEEEEecceee
Q psy573          191 NAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       191 n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |..|.....+.|.|..+|.+.
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~  103 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIH  103 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEEC
T ss_pred             ECCCceeEEEEEEEcCCCcCC
Confidence            999998888999998776653

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=85.64  Aligned_cols=82  Identities=23%  Similarity=0.500  Sum_probs=65.6

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc--e
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK--I  196 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~  196 (216)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     ....|.|.++..+|+|.|+|.+.|..+.  .
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~   85 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-----PSPVLILPEIGPQDQGTYSCVATHSSHGPQE   85 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-----CCSEEEEESCCTTTCEEEECEECCSSCCCEE
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-----CCCEEEECCCCcccCEEEEEEEEeCCCCcEE
Confidence            44555566778999999999999999999999999998876543     3578999999999999999999997654  3


Q ss_pred             EEEEEEEEE
Q psy573          197 SASATLTVQ  205 (216)
Q Consensus       197 ~~~~~l~v~  205 (216)
                      +..+.|.|.
T Consensus        86 s~~~~v~V~   94 (96)
T 2ens_A           86 SRAVSISII   94 (96)
T ss_dssp             CCCEEEEEC
T ss_pred             EEEEEEEEe
Confidence            444555554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.50  E-value=5.9e-13  Score=91.58  Aligned_cols=92  Identities=30%  Similarity=0.531  Sum_probs=77.7

Q ss_pred             eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-----cCCeEEEecC-CCCCCeEEEEEE
Q psy573          116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSLQLSDV-RLEDGGEYVCEA  189 (216)
Q Consensus       116 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~d~g~y~C~~  189 (216)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...+....     ....|.|.++ ..+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4567788888888999999999999999999999999999998876554332     2346999999 499999999999


Q ss_pred             EcCCcceEEEEEEEEEec
Q psy573          190 ENAVGKISASATLTVQSK  207 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~~  207 (216)
                      .|..|.....+.|.|...
T Consensus        84 ~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             EETTEEEEEEEEEEEECG
T ss_pred             EcCCCcEEEEEEEEEecc
Confidence            999999888888888765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.9e-13  Score=84.53  Aligned_cols=94  Identities=21%  Similarity=0.324  Sum_probs=68.3

Q ss_pred             cceEecccc---eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEE
Q psy573           25 EEFRVQPKS---QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~---~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      |.+...|..   ..+.+|+.+.|.|.+ . .|.+.+.||+++..+.......+.... ...|.|.+++.+|+|.|.|.+.
T Consensus        11 p~~~~~p~~~~~~~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (113)
T 2cpc_A           11 SSWIVYPSGKVYVAAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID   88 (113)
T ss_dssp             SCSEEESCSCEEEEEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESS
T ss_pred             CcEEEccCCceeEEEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEe
Confidence            444455544   678899999999998 3 678899999999988543332222211 1579999999999999999998


Q ss_pred             cCCCCcccceeEEEEeecceEEeCC
Q psy573          101 NVAGTRESTDAVLRVLVKPYIIRGP  125 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p~~~~~~  125 (216)
                      |     ....+.|.|..+|.....+
T Consensus        89 n-----~~~~~~l~V~~~p~~~~~p  108 (113)
T 2cpc_A           89 D-----ESASFTVTVTEPPVRIIYS  108 (113)
T ss_dssp             S-----CEEEEEEEEECCCCCCCCC
T ss_pred             c-----CcEEEEEEEecCCchhccC
Confidence            7     2456778888777554433

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.50  E-value=1.1e-13  Score=95.48  Aligned_cols=102  Identities=53%  Similarity=0.966  Sum_probs=80.5

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc------cCceEEEecCcEEEEcc
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE------NSKRLRLVDGTNLAIQD   86 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~   86 (216)
                      +..+.|.|...++.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...      ...+.....++.|.|.+
T Consensus        97 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  176 (217)
T 2vr9_A           97 SRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN  176 (217)
T ss_dssp             CCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESS
T ss_pred             cccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEee
Confidence            446677777777788888888889999999999987567788999999999988521      23445556677899999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      ++.+|+|.|+|.+.|..|........+.
T Consensus       177 ~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          177 VEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             CCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCHHHCeEEEEEEEcccceeccccEEEE
Confidence            9999999999999998876544434443

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.50  E-value=3.1e-13  Score=81.71  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=68.8

Q ss_pred             cceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcC
Q psy573          118 KPYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       118 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      +|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|++++..+... +......   ..|.|.++..+|+|.|+|.+   
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---
Confidence            4556555555 5788999999999998 788999999999887543 3333322   36999999999999999999   


Q ss_pred             CcceEEEEEEEEEecce
Q psy573          193 VGKISASATLTVQSKYL  209 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p~  209 (216)
                       |....++.|.|.++|.
T Consensus        83 -g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           83 -GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             -TTEEEEEEEEECCSCC
T ss_pred             -CCceEEEEEEEecCCC
Confidence             6777888899988773

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.50  E-value=1.6e-13  Score=83.43  Aligned_cols=88  Identities=26%  Similarity=0.437  Sum_probs=66.5

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.+...+....+.+|+.+.|.|.+ .+.+.+ +.||+++..+..  ..++....++   .|.|.+++.+|+|.|+|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~-v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVL-SSVAAP-VKWCYGNNVLRP--GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF   82 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEEC-SSCCCS-CEEEESSSBCCC--SSSEEEEECSSEEEEEECSCCTTTCCCEEEEC
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEE-eCCCCC-eEEEECCEECCC--CCcEEEEEcCCEEEEEEccCCcccCEEEEEEE
Confidence            35677777888999999999999998 677777 999999887743  3344444333   5999999999999999982


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                          +. ....+.|.|..+|
T Consensus        83 ----g~-~~~~~~l~V~~~p   97 (103)
T 2e7b_A           83 ----GD-QTTSATLTVTALP   97 (103)
T ss_dssp             ----SS-CBCCBCEEEECCC
T ss_pred             ----CC-cEEEEEEEEEecc
Confidence                22 2345667777655

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.50  E-value=3.7e-13  Score=82.66  Aligned_cols=90  Identities=21%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------------c-cccCceEEEecCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------------D-FENSKRLRLVDGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------------~-~~~~~~~~~~~~~~l~i~~~~~   89 (216)
                      +.+++.+..+.+|+++.|.|.. ...+...+.||++....                . ....+|..+..+++|.|.+++.
T Consensus         3 l~i~~~p~~~~~G~~v~L~~~~-~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~   81 (111)
T 2qsq_A            3 LTIESTPFNVAEGKEVLLLVHN-LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQ   81 (111)
T ss_dssp             CEEEEESSEEETTSCEEEEEES-CCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCG
T ss_pred             cEEEeccceeccCCCEEEEEeC-CCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcc
Confidence            3444555678999999999975 22234579999975311                0 1246788888899999999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      +|+|.|+|.+.+..+......+.|.|..
T Consensus        82 ~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           82 NDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             GGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             cCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            9999999999987654334556666653

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.50  E-value=1.8e-13  Score=86.11  Aligned_cols=84  Identities=17%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeee----cCCeEEEecCCCCCCeEEEEEEEc
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      +....+.+|+++.|.|.+.+.|.+.+.|++.+..+         ...+....    ...+|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence            34567889999999999999999999999765532         22233222    136799999999999999999999


Q ss_pred             CCcceEEEEEEEEEecce
Q psy573          192 AVGKISASATLTVQSKYL  209 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p~  209 (216)
                      . |.....+.|.|..+|.
T Consensus        88 ~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           88 D-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             S-SEEEEEEEEEEECC--
T ss_pred             C-CCCcEEEEEEEEeCCC
Confidence            9 9899999999998775

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.49  E-value=3.5e-13  Score=81.51  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=65.5

Q ss_pred             ccceEecccc-eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~-~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.|...+.+ ..+.+|+.+.|.|.+ . .|.+.+.||+++..+.......+.... ...|.|.++..+|+|.|.|.+  
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVEL-A-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEE-S-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEe-c-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            5677777766 678899999999998 4 688899999999887443322222222 136999999999999999999  


Q ss_pred             CCCCcccceeEEEEeecc
Q psy573          102 VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p  119 (216)
                        +. ......|.|..+|
T Consensus        83 --g~-~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GD-EKCSTELFVRSGP   97 (100)
T ss_dssp             --TT-EEEEEEEEECCSC
T ss_pred             --CC-ceEEEEEEEecCC
Confidence              22 2445677777655

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.49  E-value=1.2e-13  Score=84.11  Aligned_cols=88  Identities=26%  Similarity=0.379  Sum_probs=70.1

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCC---eEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR---SLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+.. .+......+   .|.|.++..+|+|.|+|.    .
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~   82 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----F   82 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----C
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----E
Confidence            4555556677899999999999999999888 999999988753 344444444   499999999999999998    5


Q ss_pred             cceEEEEEEEEEeccee
Q psy573          194 GKISASATLTVQSKYLK  210 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~~  210 (216)
                      |.....+.|.|.++|..
T Consensus        83 g~~~~~~~l~V~~~p~~   99 (103)
T 2e7b_A           83 GDQTTSATLTVTALPSG   99 (103)
T ss_dssp             SSCBCCBCEEEECCCCC
T ss_pred             CCcEEEEEEEEEecccc
Confidence            66677788888887753

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.49  E-value=6.7e-13  Score=85.03  Aligned_cols=82  Identities=18%  Similarity=0.331  Sum_probs=65.6

Q ss_pred             EeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-----------Ceeee------cCCeEEEecC
Q psy573          115 VLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-----------RMSVL------PSRSLQLSDV  177 (216)
Q Consensus       115 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----------~~~~~------~~~~l~i~~~  177 (216)
                      ...+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+...           +....      ..+.|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            346788888888899999999999999999999999999987765322           11111      2357999999


Q ss_pred             CCCCCeEEEEEEEcCCcce
Q psy573          178 RLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~~~~  196 (216)
                      ..+|+|.|+|.+.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999998874

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=86.34  Aligned_cols=90  Identities=17%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEe----cCcEEEEcccCCCCCceEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLV----DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ...+..+.+.+|++++|.|.+ .+.|.+.+.|++.+..+..      ....++...    ...+|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   83 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVT-SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC   83 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEEC-CCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCccEEEcCCCCEEEEeEE-eccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEE
Confidence            344566789999999999998 6778899999986553211      122333332    13589999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeecce
Q psy573           98 VVKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      .+.+. +. ....+.|.|..+|.
T Consensus        84 ~a~n~-g~-~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           84 LHYSD-SV-STKEVKVIVLATMK  104 (124)
T ss_dssp             EEESS-SE-EEEEEEEEEECC--
T ss_pred             EEEcC-CC-CcEEEEEEEEeCCC
Confidence            99988 44 35567888887764

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=88.80  Aligned_cols=87  Identities=28%  Similarity=0.437  Sum_probs=69.6

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEe---------eCCccCCCCCeeeec----CCeEEEecCCCCCCeEEEEEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWK---------RLGSAMPEDRMSVLP----SRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~---------~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      ..+....+..|+++.|.|.+.+.+.+.+.|+         +++..+...+.....    ..+|.|.+++.+|+|.|+|.+
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  122 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI  122 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEE
Confidence            4456778999999999999998888899999         444444444443322    357999999999999999999


Q ss_pred             EcCCcceEEEEEEEEEeccee
Q psy573          190 ENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .|. +.....+.|.|.++|..
T Consensus       123 ~n~-~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A          123 FTM-PVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             CSS-SCEEEEEEEEEECCCC-
T ss_pred             EcC-CCceEEEEEEEEeCCCC
Confidence            999 88889999999987754

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.49  E-value=4.7e-13  Score=90.75  Aligned_cols=96  Identities=25%  Similarity=0.414  Sum_probs=79.6

Q ss_pred             eecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCC---eEEEecCCCCCCeEEEEEEEc
Q psy573          116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       116 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +.......   .|.|.++..+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            45677777788889999999999999988899999999999877543 33333333   799999999999999999999


Q ss_pred             CCcceEEEEEEEEEecceee
Q psy573          192 AVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p~~~  211 (216)
                      ..+.....+.|.|...|.+.
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~  104 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFH  104 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEcCCCCC
Confidence            99998888889888777554

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.49  E-value=2.2e-13  Score=83.99  Aligned_cols=93  Identities=23%  Similarity=0.410  Sum_probs=67.7

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCC-CCCCCeeEEeeCCEEeccccCceEEEe---------cCcEEEEcccCCCCC
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNGHPIDFENSKRLRLV---------DGTNLAIQDSRKTDD   92 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~   92 (216)
                      .+|.+...|....+.+|+.++|.|.+.. ..+.+.+.|++++..+...........         ..+.|.|.+++.+|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            3577888888899999999999999821 244679999999987743211111111         125799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEE
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |.|+|.+.|..|...+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999987764445555554

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.2e-13  Score=82.10  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=66.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.|...+....+.+|+.+.|.|.+  +.|.+.+.|++++..+...  .++....++   .|.|.+++.+|+|.|+|.  
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT--EHPAATVTWRKGLLELRAS--GKHQPSQEGLTLRLTISALEKADSDTYTCD--   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC--SSCCSCCEEEESSCBCCSS--SSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe--CCCCCeEEEEeCCEECCCC--CeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence            5677777888999999999999995  6778899999999877433  344444333   799999999999999998  


Q ss_pred             cCCCCcccceeEEEEeecc
Q psy573          101 NVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p  119 (216)
                        .+.. ...+.|.|...|
T Consensus        82 --~g~~-~~~~~l~V~~~p   97 (103)
T 2dku_A           82 --IGQA-QSRAQLLVQGRR   97 (103)
T ss_dssp             --CSSC-BCCEEEEEECSC
T ss_pred             --eCCc-eEEEEEEEeCcc
Confidence              2322 345677776655

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=83.84  Aligned_cols=88  Identities=20%  Similarity=0.288  Sum_probs=68.9

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +.+...+....+.+|+.+.|.|.+.+.|. +.+.|++++..+... ++.....   ..|.|.++..+|+|.|+|.+.   
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~---   85 (104)
T 2eny_A            9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR---   85 (104)
T ss_dssp             CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET---
T ss_pred             CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC---
Confidence            34556667789999999999999988774 479999999887543 3333322   369999999999999999884   


Q ss_pred             cceEEEEEEEEEeccee
Q psy573          194 GKISASATLTVQSKYLK  210 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~~  210 (216)
                       +...+..|.|.++|..
T Consensus        86 -~~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           86 -GLTSKASLIVRERSGP  101 (104)
T ss_dssp             -TEEEEECEEEECCCSS
T ss_pred             -CeeEEEEEEEeCCCcC
Confidence             4567888999988754

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-12  Score=80.20  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-----------eeeecCC---eEEEecCCCCCCe
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----------MSVLPSR---SLQLSDVRLEDGG  183 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-----------~~~~~~~---~l~i~~~~~~d~g  183 (216)
                      ++.+...+.+..+.+|+.+.|.|.+.+  .+.+.|++|+..+....           +....++   .|.|.++..+|+|
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G   85 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSG   85 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCS
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCc
Confidence            456778888999999999999999987  77899999999987553           3333333   6999999999999


Q ss_pred             EEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          184 EYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       184 ~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .|+|..-+   ....++.|.|.++|..
T Consensus        86 ~Y~~~~~~---~~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           86 ALVGFSCP---GVQDSAALTIQESSGP  109 (112)
T ss_dssp             EEEEEEET---TEEEEEEEEEECSSCS
T ss_pred             cEEEEEEC---CeeEEEEEEEeCCCcc
Confidence            99875543   3456889999988753

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.48  E-value=1e-13  Score=87.06  Aligned_cols=97  Identities=19%  Similarity=0.368  Sum_probs=66.8

Q ss_pred             eEecccc-eEEecCCcEEEEeeCCCC--CCCCeeEEeeCCEEecc----ccCceEEE-----ecCcEEEEcccCCCCCce
Q psy573           27 FRVQPKS-QRVAAGDTALLECGPPRG--HPEPTLVWKKNGHPIDF----ENSKRLRL-----VDGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        27 ~~~~~~~-~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~----~~~~~~~~-----~~~~~l~i~~~~~~d~g~   94 (216)
                      +.+.|.. +.+.+|+.+.|.|.+ .+  .+.+.+.|++++..+..    ........     ...+.|.|.+++.+|+|.
T Consensus        10 v~i~p~~~v~v~~G~~v~L~C~~-~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   88 (122)
T 3s35_X           10 VVLSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL   88 (122)
T ss_dssp             EEEESCSCEEEEETCCEEEEEEE-EECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEE
T ss_pred             EEEcCCCCEEEecCCeEEEEEEE-EcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEE
Confidence            4444444 588999999999998 55  45578999998774321    11111111     123579999999999999


Q ss_pred             EEEEEEcCCCCcccceeEEEEeecceEEeCC
Q psy573           95 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGP  125 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~  125 (216)
                      |+|.+.|..+.. ...+.|.|..+|.+...+
T Consensus        89 Y~C~a~n~~g~~-~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           89 YTCAASSGLMTK-KNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEEEEECC----
T ss_pred             EEEEEccCCCce-EEEEEEEEeccCeEEeec
Confidence            999999988765 457788888888765544

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=9.9e-14  Score=84.57  Aligned_cols=88  Identities=24%  Similarity=0.400  Sum_probs=66.9

Q ss_pred             ceEEeCCCc---eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEEc
Q psy573          119 PYIIRGPKD---TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       119 p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      |.+...+..   ..+.+|+.+.|.|.+.+.|.+ +.|++++..+... +.....   ...|.|.++..+|+|.|+|.+.|
T Consensus         8 P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   86 (104)
T 2e6p_A            8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG   86 (104)
T ss_dssp             SCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSS
T ss_pred             CCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECC
Confidence            444444555   688999999999999999888 9999999887543 333321   24699999999999999999988


Q ss_pred             CCcceEEEEEEEEEecceee
Q psy573          192 AVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~~p~~~  211 (216)
                      ..+    .+.|.|.++|..+
T Consensus        87 ~~~----~~~l~V~~~P~pp  102 (104)
T 2e6p_A           87 VSA----FFGVTVQDPSGPS  102 (104)
T ss_dssp             CCC----CEEEEEECCCCSS
T ss_pred             ceE----EEEEEEcCCCCCc
Confidence            743    5667788777543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4e-14  Score=85.87  Aligned_cols=86  Identities=24%  Similarity=0.337  Sum_probs=67.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-----CeeeecC---CeEEEecCCCCCCeEEEEEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPS---RSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----~~~~~~~---~~l~i~~~~~~d~g~y~C~~  189 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+...     ++.....   ..|.|.++..+|+|.|+|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            45666677778999999999999999888 999999999887543     2233322   35999999999999999999


Q ss_pred             EcCCcceEEEEEEEEEecc
Q psy573          190 ENAVGKISASATLTVQSKY  208 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~~p  208 (216)
                      .|    ......|.|.++|
T Consensus        87 ~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           87 NG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             SS----CEECCBEEEECCC
T ss_pred             cC----CcEEEEEEEeCCC
Confidence            86    3455667777654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=1.4e-13  Score=84.19  Aligned_cols=85  Identities=28%  Similarity=0.458  Sum_probs=66.2

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+... +......   ..|.|.++..+|.|.|+|.+.|. 
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-   85 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY-   85 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS-
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC-
Confidence            4566777788899999999999999988877 9999999887543 3333322   37999999999999999999998 


Q ss_pred             cceEEEEEEEEE
Q psy573          194 GKISASATLTVQ  205 (216)
Q Consensus       194 ~~~~~~~~l~v~  205 (216)
                       ....++.|.|.
T Consensus        86 -~~~~~~~l~V~   96 (106)
T 2dlt_A           86 -ALSLSAKLNFL   96 (106)
T ss_dssp             -CCCCCBCEEEE
T ss_pred             -CceEEEEEEEE
Confidence             33344445554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.47  E-value=1.4e-13  Score=92.96  Aligned_cols=89  Identities=26%  Similarity=0.521  Sum_probs=73.3

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG   93 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g   93 (216)
                      ..+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......++....++.|.|.++..+|+|
T Consensus        91 ~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  168 (191)
T 1epf_A           91 ATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEG  168 (191)
T ss_dssp             EEEEEEEEC-CSEEEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCE
T ss_pred             EEEEEEeec-CceEecCCCcEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCE
Confidence            344455443 4677777888889999999999998 68889999999999988665666677777778999999999999


Q ss_pred             eEEEEEEcCCC
Q psy573           94 RYQCVVKNVAG  104 (216)
Q Consensus        94 ~y~C~~~~~~~  104 (216)
                      .|+|.+.|..+
T Consensus       169 ~Y~C~a~n~~~  179 (191)
T 1epf_A          169 TYRCEGRILAR  179 (191)
T ss_dssp             EEEEEEEEGGG
T ss_pred             EEEEEEEEecc
Confidence            99999998664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.47  E-value=8.9e-13  Score=89.23  Aligned_cols=90  Identities=24%  Similarity=0.400  Sum_probs=74.2

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeee---cCCeEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVL---PSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~---~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ....   ....|.|.++..+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            45677777788899999999999999988999999999998775432   2221   22479999999999999999999


Q ss_pred             cCCcceEEEEEEEEEe
Q psy573          191 NAVGKISASATLTVQS  206 (216)
Q Consensus       191 n~~~~~~~~~~l~v~~  206 (216)
                      |..|.......|.|..
T Consensus        84 n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           84 NGSGQATSTAELLVKA   99 (194)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             cCCceEeEEEEEEEcc
Confidence            9999888888888873

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.47  E-value=7.5e-13  Score=79.23  Aligned_cols=83  Identities=24%  Similarity=0.446  Sum_probs=63.3

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .|....+.+|+.+.|.|.+ .+  .+.+.|++++..+...  .++... ++.|.|.+++.+|+|.|.|.+.|..+.. ..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~-~~--~p~v~W~k~g~~~~~~--~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~   79 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCML-KD--AAVISWTKDGVHLGPN--NRTVLI-GEYLQIKGATPRDSGLYACTAARTVDSE-TW   79 (95)
T ss_dssp             -CEEEEECTTSCEEEECCC-CT--TCEEEEEETTEEECCC--SSEEEE-TTEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             CCCcEEECCCCEEEEEEEe-CC--CCEEEEEECCEECCCC--ceEEEe-CCEEEECcCCcccCEEEEEEEccCCCcE-EE
Confidence            4566789999999999987 44  4799999999988432  334333 5689999999999999999999987754 44


Q ss_pred             eeEEEEeecc
Q psy573          110 DAVLRVLVKP  119 (216)
Q Consensus       110 ~~~l~v~~~p  119 (216)
                      .+.|.|..++
T Consensus        80 ~~~l~V~~~~   89 (95)
T 4hwu_A           80 IFMVNVTDAA   89 (95)
T ss_dssp             EEEEEECCC-
T ss_pred             EEEEEEeCCc
Confidence            5666665543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=83.05  Aligned_cols=83  Identities=29%  Similarity=0.477  Sum_probs=62.8

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .|....+.+|+.++|.|.+ .+.| +.+.|++++..+..  ..++... +..|.|.++..+|+|.|.|.+.|..+.. ..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~-~g~p-p~i~W~k~g~~~~~--~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~   82 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLAE--SNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSD-TT   82 (99)
T ss_dssp             CEEECCBCTTSCEEEECCC-CSSC-CEEEEEESSSBCCC--CSSEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEE-EE
T ss_pred             CCcCeEEeCCCcEEEEEEe-cCCC-CeEEEEECCEECCC--CCcEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceE-EE
Confidence            3455678899999999998 5656 69999999987743  2334333 6789999999999999999999987654 44


Q ss_pred             eeEEEEeec
Q psy573          110 DAVLRVLVK  118 (216)
Q Consensus       110 ~~~l~v~~~  118 (216)
                      .+.|.|...
T Consensus        83 ~~~l~V~~~   91 (99)
T 2cr3_A           83 YFSVNVSDA   91 (99)
T ss_dssp             EEEECBCSC
T ss_pred             EEEEEEecC
Confidence            455555543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-12  Score=78.53  Aligned_cols=73  Identities=25%  Similarity=0.459  Sum_probs=57.8

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +.|...+....+.+|+.+.|.|.+  +.+.+.+.||+++..+............. ..|.|.+++.+|+|.|.|.+
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC--SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe--CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            556667788899999999999998  56788999999998885433333322222 47999999999999999999

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.47  E-value=2.2e-12  Score=88.70  Aligned_cols=91  Identities=37%  Similarity=0.676  Sum_probs=76.2

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC--CCCeeee--cC--CeEEEecCCC-CCCeEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVL--PS--RSLQLSDVRL-EDGGEYVCEA  189 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~--~~~~~~~--~~--~~l~i~~~~~-~d~g~y~C~~  189 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.  ..+....  .+  ..|.|.++.. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            46777888888899999999999999999999999999998875  2333332  22  4799999999 9999999999


Q ss_pred             EcCCcc-eEEEEEEEEEec
Q psy573          190 ENAVGK-ISASATLTVQSK  207 (216)
Q Consensus       190 ~n~~~~-~~~~~~l~v~~~  207 (216)
                      .|..|. ....+.|.|...
T Consensus        85 ~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECT
T ss_pred             EeCCCCeEEeeEEEEEecc
Confidence            999998 788888888865

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-12  Score=80.50  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-c-------eEEEecCc---EEEEcccCCCCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-K-------RLRLVDGT---NLAIQDSRKTDD   92 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~-------~~~~~~~~---~l~i~~~~~~d~   92 (216)
                      ++.|...+.+..+.+|+.+.|.|.+ .+  .+.+.|+++|..+..... .       ++.+..++   +|.|.+++.+|+
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~v-s~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDL-ST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEE-SS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEE-CC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            4678888899999999999999998 44  678999999999854321 1       66665443   799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      |.|.|..-+.    ...+..|.|..+|
T Consensus        85 G~Y~~~~~~~----~~ssA~L~V~~~p  107 (112)
T 2e6q_A           85 GALVGFSCPG----VQDSAALTIQESS  107 (112)
T ss_dssp             SEEEEEEETT----EEEEEEEEEECSS
T ss_pred             ccEEEEEECC----eeEEEEEEEeCCC
Confidence            9997754331    2346778887766

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=3.2e-13  Score=83.53  Aligned_cols=80  Identities=31%  Similarity=0.517  Sum_probs=64.2

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      ..+..|+.+.|.|.+. .|.+.+.|++++..+... +......   ..|.|.++..+|+|.|+|.+.|    ....+.|.
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~   97 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVT   97 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEE
Confidence            4677899999999995 788899999999877543 3333322   4799999999999999999988    56678888


Q ss_pred             EEecceeee
Q psy573          204 VQSKYLKVI  212 (216)
Q Consensus       204 v~~~p~~~~  212 (216)
                      |.++|....
T Consensus        98 V~~~p~~~~  106 (113)
T 2cpc_A           98 VTEPPVRII  106 (113)
T ss_dssp             EECCCCCCC
T ss_pred             EecCCchhc
Confidence            988885543

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.46  E-value=2.2e-13  Score=85.06  Aligned_cols=80  Identities=18%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--------CcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--------GTNLAIQDSRKTDDGRYQCVVKNVAGTREST  109 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  109 (216)
                      .+..+.|.|.+ .+.|.|.+.|+++|..+............        .+.|.|.++...|+|.|+|.+.|..|.. ..
T Consensus        14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~   91 (126)
T 1he7_A           14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SA   91 (126)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             cCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-EE
Confidence            67889999998 89999999999999998543332222221        2579999999999999999999998875 45


Q ss_pred             eeEEEEeecc
Q psy573          110 DAVLRVLVKP  119 (216)
Q Consensus       110 ~~~l~v~~~p  119 (216)
                      ++.|.|...|
T Consensus        92 t~~l~v~~~P  101 (126)
T 1he7_A           92 SIMAAFMDNP  101 (126)
T ss_dssp             EEEECCCSCT
T ss_pred             EEEEEEEcCC
Confidence            5667666555

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.46  E-value=7.4e-13  Score=89.47  Aligned_cols=92  Identities=18%  Similarity=0.337  Sum_probs=73.9

Q ss_pred             cceEEeCCCceeEeC-CCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          118 KPYIIRGPKDTTVSA-GSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +|.+... ....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+....... ....|.|.++..+|+|.|+|.+.|. +
T Consensus         3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~-~   79 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV-S   79 (190)
T ss_dssp             CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-T
T ss_pred             CCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-C
Confidence            4555553 4455556 999999999988876  7899999998876554332 4577999999999999999999999 8


Q ss_pred             ceEEEEEEEEEecceeee
Q psy573          195 KISASATLTVQSKYLKVI  212 (216)
Q Consensus       195 ~~~~~~~l~v~~~p~~~~  212 (216)
                      .....+.|.|..+|.+..
T Consensus        80 ~~~~~~~l~V~~~p~~~~   97 (190)
T 2wv3_A           80 APKANATIEVKAAPDITG   97 (190)
T ss_dssp             EEEEEEEEEEECCCEEEE
T ss_pred             cccccEEEEEecCCcccc
Confidence            888899999998886653

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=2.5e-13  Score=80.46  Aligned_cols=79  Identities=24%  Similarity=0.393  Sum_probs=56.8

Q ss_pred             eEEeCCCce--eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec-C--CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          120 YIIRGPKDT--TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP-S--RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       120 ~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~-~--~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .+..+....  .+.+|+.+.|.|.+.+ |.+.+.|+|+|..+... +..... +  ..|.|.++..+|+|.|+|.|.|  
T Consensus         6 ~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--   82 (91)
T 2lvc_A            6 HIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD--   82 (91)
T ss_dssp             CCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS--
T ss_pred             EEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc--
Confidence            333334443  3457999999999865 88899999999988654 333322 2  3699999999999999999855  


Q ss_pred             cceEEEEEEE
Q psy573          194 GKISASATLT  203 (216)
Q Consensus       194 ~~~~~~~~l~  203 (216)
                        .+.++.|.
T Consensus        83 --~~~~~~lt   90 (91)
T 2lvc_A           83 --ECAYFTVT   90 (91)
T ss_dssp             --CEEEEEEE
T ss_pred             --eEEEEEEE
Confidence              34555554

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.46  E-value=5.1e-13  Score=81.95  Aligned_cols=88  Identities=26%  Similarity=0.425  Sum_probs=67.6

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCC---eEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR---SLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+|.+...+....+.+|+.+.|.|.+.+.  +.+.|++++..+.. .++.....+   .|.|.++..+|+|.|+|.+.  
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--   82 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG--   82 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET--
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc--
Confidence            34556566677789999999999999765  68999999987754 333333333   49999999999999999994  


Q ss_pred             CcceEEEEEEEEEeccee
Q psy573          193 VGKISASATLTVQSKYLK  210 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p~~  210 (216)
                        +....+.|.|..+|..
T Consensus        83 --n~~~~~~l~V~~~p~~   98 (108)
T 2dm7_A           83 --QERTSATLTVRALPAR   98 (108)
T ss_dssp             --TEEEEEECEEECCCSS
T ss_pred             --CCEEEEEEEEecCCHH
Confidence              4577788888876643

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.46  E-value=6.8e-13  Score=91.48  Aligned_cols=94  Identities=22%  Similarity=0.360  Sum_probs=76.8

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeee---cCCeEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL---PSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~---~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+ ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+...   +....   ....|.|.++..+|.|.|+|.+.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            34555 4566678889999999999999999999999999887654   22222   24679999999999999999999


Q ss_pred             cCCcceEEEEEEEEEecceee
Q psy573          191 NAVGKISASATLTVQSKYLKV  211 (216)
Q Consensus       191 n~~~~~~~~~~l~v~~~p~~~  211 (216)
                      |..|.....+.|.+..+|..+
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p  117 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSP  117 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCC
T ss_pred             ECCCceEEEEEEEECCCCCCC
Confidence            999999999999988766543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=5.5e-13  Score=81.08  Aligned_cols=89  Identities=19%  Similarity=0.328  Sum_probs=70.2

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCC---eEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+... ++.....+   .|.|.++..+|+|.|+|.    .
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~   82 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----I   82 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----C
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----e
Confidence            4555566677899999999999994 7888899999999887643 44443333   799999999999999998    5


Q ss_pred             cceEEEEEEEEEecceee
Q psy573          194 GKISASATLTVQSKYLKV  211 (216)
Q Consensus       194 ~~~~~~~~l~v~~~p~~~  211 (216)
                      |.....+.|.|.+.|..+
T Consensus        83 g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           83 GQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             SSCBCCEEEEEECSCCCC
T ss_pred             CCceEEEEEEEeCccCCC
Confidence            666677888888877543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=2.9e-13  Score=81.51  Aligned_cols=87  Identities=26%  Similarity=0.342  Sum_probs=62.9

Q ss_pred             ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      ++.+.+. +....+.+|+.++|.|.+..+.|.+.+.|++++.....  . . ....++.|.|.+++.+|+|.|.|.+.|.
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~--~-~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--S-R-AMDFNGILTIRNVQPSDAGTYVCTGSNM   84 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--T-T-EEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC--c-e-eecCCCEEEEeCCChhhCEEEEEEecCC
Confidence            3444444 45678999999999999832678899999997543311  1 1 1234568999999999999999999998


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .+.. ...+.|.|
T Consensus        85 ~g~~-~~~~~l~V   96 (98)
T 1gl4_B           85 FAMD-QGTATLHV   96 (98)
T ss_dssp             SCEE-EEEEEEEE
T ss_pred             CCcc-ccEEEEEE
Confidence            7764 44455554

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=4.7e-13  Score=81.47  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=61.9

Q ss_pred             cceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCC---eEEEecCCCCCCeEEEEEEEc
Q psy573          118 KPYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSR---SLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       118 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      +|.+...+.. ..+.+|+.+.|.|.+ +.|.+.+.|++++..+...  ++.....+   .|.|.++..+|+|.|+|.+  
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--   91 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV--   91 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE--
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE--
Confidence            3444444444 688999999999999 6888899999999887654  44443333   7999999999999999999  


Q ss_pred             CCcceEEEEEEEEE
Q psy573          192 AVGKISASATLTVQ  205 (216)
Q Consensus       192 ~~~~~~~~~~l~v~  205 (216)
                        +....+..|.|.
T Consensus        92 --~~~~~~~~l~V~  103 (104)
T 1pd6_A           92 --GGEKCSTELFVK  103 (104)
T ss_dssp             --TTEEECCEEEEE
T ss_pred             --CCCcEEEEEEEe
Confidence              334455556554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.44  E-value=5.6e-13  Score=81.04  Aligned_cols=81  Identities=17%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             ecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE--EecC----cEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR--LVDG----TNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      ..|+.+.|.|.+ .+.|.|.+.|++++..+.........  ....    +.|.|.++..+|+|.|+|.+.|..|.. ...
T Consensus        14 ~~~~~~~~~c~v-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~   91 (103)
T 1wwb_X           14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQ   91 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred             eECcEEEEEEEE-EEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE-eEE
Confidence            468889999998 89999999999999988544321121  1222    349999999999999999999998875 456


Q ss_pred             eEEEEeecc
Q psy573          111 AVLRVLVKP  119 (216)
Q Consensus       111 ~~l~v~~~p  119 (216)
                      +.|.|...|
T Consensus        92 ~~l~V~~~P  100 (103)
T 1wwb_X           92 ISAHFMGWP  100 (103)
T ss_dssp             EEECCSCCC
T ss_pred             EEEEECCCC
Confidence            677766554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.44  E-value=5.1e-15  Score=93.04  Aligned_cols=101  Identities=18%  Similarity=0.288  Sum_probs=75.2

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEEe----c---CcEEEE
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLV----D---GTNLAI   84 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~----~---~~~l~i   84 (216)
                      +..+.|.|.. +|.+.. +....+.+|+.+.|.|.+ .+.|.+. +.|++++..+......++...    .   ...|.|
T Consensus         4 ~~~~~l~V~~-~P~i~~-~~~~~~~~G~~v~l~C~~-~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I   80 (122)
T 2cry_A            4 GSSGTLTVNG-PPIISS-TQTQHALHGEKGQIKCFI-RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI   80 (122)
T ss_dssp             SCCCCCCCCS-SCCEEE-ECCCCCCTTSCCCCCEEE-CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred             ceEEEEEEec-CCCccC-CCeEEEecCCCEEEEEEE-eecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence            3456677665 467766 778889999999999998 7888876 999999988754323333331    2   237999


Q ss_pred             cccCCCCC-ceEEEEEEcCCCCcccceeEEEEee
Q psy573           85 QDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        85 ~~~~~~d~-g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      .+++.+|. |.|.|.+.|..|.. ...+.|.|..
T Consensus        81 ~~v~~~D~~G~Y~C~a~N~~G~~-~~~~~l~V~~  113 (122)
T 2cry_A           81 SNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQG  113 (122)
T ss_dssp             TTCCHHHHHSCEEEEEECSSCEE-EEEECCCCSC
T ss_pred             cCCChhhCCceEEEEEECCCCeE-EEEEEEEECC
Confidence            99999999 99999999988865 3445555543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.44  E-value=7.9e-13  Score=79.15  Aligned_cols=82  Identities=28%  Similarity=0.446  Sum_probs=63.8

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +.+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+... ++.....   ..|.|.++..+|+|.|+|.+    |
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g   83 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----G   83 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----T
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----C
Confidence            344555677889999999999999 7888899999999876533 3333322   36999999999999999999    5


Q ss_pred             ceEEEEEEEEE
Q psy573          195 KISASATLTVQ  205 (216)
Q Consensus       195 ~~~~~~~l~v~  205 (216)
                      ....++.|.|.
T Consensus        84 ~~~~~~~l~V~   94 (95)
T 2k1m_A           84 SSKVKFDLKVI   94 (95)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            56667777765

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.43  E-value=2.6e-13  Score=83.26  Aligned_cols=87  Identities=29%  Similarity=0.437  Sum_probs=64.6

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+|.|...+....+.+|+.++|.|.+ .+.  +.+.|++++..+...  .++....+   ..|.|.+++.+|+|.|+|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   81 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCEL-SKV--APVEWKKGPETLRDG--GRYSLKQDGTRCELQIHDLSVADAGEYSCMC   81 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEB-SSS--CCCEEESSSSBCCSS--SSCEEEEETTEEEEEESSCCTTTCSEEEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEe-CCC--CeeEEEECCEECCCC--CCEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            46777777888999999999999998 443  689999998877432  33333322   25999999999999999999


Q ss_pred             EcCCCCcccceeEEEEeecc
Q psy573          100 KNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .+     ......|.|...|
T Consensus        82 ~n-----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           82 GQ-----ERTSATLTVRALP   96 (108)
T ss_dssp             TT-----EEEEEECEEECCC
T ss_pred             cC-----CEEEEEEEEecCC
Confidence            44     2345566666644

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=1.1e-12  Score=79.86  Aligned_cols=74  Identities=24%  Similarity=0.426  Sum_probs=57.5

Q ss_pred             ccceEecccc-eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~-~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.|...+.. ..+.+|+.+.|.|.+  +.|.+.+.|++++..+.... .++....+   ..|.|.+++.+|+|.|.|.+
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~--~~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSG-SKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC--SSSSSCCEEEESSSEECCCS-SSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE--cCCCCEEEEEECCEECCCCC-CeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            4566666655 789999999999998  47788899999999885431 23333322   28999999999999999999


Q ss_pred             E
Q psy573          100 K  100 (216)
Q Consensus       100 ~  100 (216)
                      .
T Consensus        92 ~   92 (104)
T 1pd6_A           92 G   92 (104)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.43  E-value=6.4e-13  Score=90.97  Aligned_cols=101  Identities=21%  Similarity=0.407  Sum_probs=72.5

Q ss_pred             hhceeeEEeec--cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCC
Q psy573           14 EKKKLKIEMLR--EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKT   90 (216)
Q Consensus        14 ~~~~l~v~~~~--~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~   90 (216)
                      ..+.|.|...+  |.+...+..  +.+|+.+.|.|.+ .+.| +.+.|++++..+..  ..++... .+..|.|.++..+
T Consensus       100 ~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~~--~~~~~~~~~~~~L~i~~v~~~  173 (208)
T 3r4d_A          100 ATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQL--TERMTLSQNNSILRIDPIKRE  173 (208)
T ss_dssp             EEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEEC-SCTT-CEEEEEETTEECCC--CSSEEEETTTTEEEESSCCGG
T ss_pred             EEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEEC-CCCC-CceEEEECCEeCCC--CCCeEEcCCCCEEEEeccCHH
Confidence            44556665443  333333333  8899999999998 5555 79999999998843  3344444 3478999999999


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEeecce
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      |+|.|+|.+.|..|...+..+.|.|..++.
T Consensus       174 d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             GCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             hCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            999999999999998878888888776653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.43  E-value=2.4e-12  Score=85.91  Aligned_cols=96  Identities=14%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|..  +.+.+.+....+.+|+.+.|.|.+....+.+.+.|++++..+..       ...+..|.|.+++.+|+
T Consensus        79 s~~~~l~V~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-------~~~~~~L~i~~v~~~d~  149 (175)
T 1fnl_A           79 SDPVQLEVHI--GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDS  149 (175)
T ss_dssp             CCCEEEEEEC--SSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGC
T ss_pred             cccEEEEEeC--CCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-------CCCCCEEEEcccChhhC
Confidence            4455666653  33445555677899999999999833334459999999988732       22356899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEee
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      |.|+|.+.|..+...+..+.|.|..
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          150 GSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEEEEEcCCCCccCccEEEEEeC
Confidence            9999999997655445566666653

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.14  E-value=1.3e-14  Score=97.38  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--E---ecc-------ccCceEEEe-----cCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--P---IDF-------ENSKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~---~~~-------~~~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.+...+.||+...  .   +..       ...+|+...     ....|+|.+++.
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~-s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~   81 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSY-EDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQP   81 (185)
Confidence            3445677889999999999987 444445899998531  1   100       123344432     234799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCC
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDR  163 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~  163 (216)
                      +|+|.|+|.+.+... .......|.|...     |.+.....     ..+.+.|.|.+.+ +|.+++.|+.+......+.
T Consensus        82 ~DsG~Y~C~~~~~~~-~fg~gT~L~V~~~~~~~~P~V~~~~~-----~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~~~  155 (185)
T 3c6l_A           82 GDSATYFCAASDNRI-FFGDGTQLVVKPNIQNPEPAVYQLKD-----PRSQDSTLCLFTDFDSQINVPKTMESGTFITDK  155 (185)
Confidence            999999999875211 1112234555432     32222111     1227899999977 5888999988765543322


Q ss_pred             eeee-cCCeEEEecC-CCCCCeEEEEE
Q psy573          164 MSVL-PSRSLQLSDV-RLEDGGEYVCE  188 (216)
Q Consensus       164 ~~~~-~~~~l~i~~~-~~~d~g~y~C~  188 (216)
                      .... ..-.+.+..+ .+++...+.|.
T Consensus       156 ~~~~~~~~~~~~~~~~~w~~~~~~~c~  182 (185)
T 3c6l_A          156 TVLDMKAMDSKSNGAIAWSNQTSFTCQ  182 (185)
Confidence            2111 1112333333 34445577775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.42  E-value=7e-13  Score=88.55  Aligned_cols=99  Identities=21%  Similarity=0.323  Sum_probs=73.8

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|.  ++.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...       ..+..|.|.+++.+|+
T Consensus        76 s~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~L~i~~v~~~d~  146 (176)
T 1f2q_A           76 SEPVYLEVF--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------YENHNISITNATVEDS  146 (176)
T ss_dssp             CCCEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------CCSSEEEESSCCGGGC
T ss_pred             cccEEEEEe--CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-------cCCCeEEECCCCcccC
Confidence            345556665  3444555556788899999999998445667799999999887321       2246899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecce
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      |.|+|.+.|..+...+..+.|.|..+|.
T Consensus       147 G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          147 GTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            9999999987554446667888877663

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.42  E-value=6.8e-12  Score=86.22  Aligned_cols=164  Identities=18%  Similarity=0.297  Sum_probs=97.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-------ccccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      ++..|.++.+..|+.++|.|.. .......+.||+.  |+   .+       ......|+....   +.+|+|.+++.+|
T Consensus         4 lTQsP~sls~s~G~~vtisC~~-S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD   82 (259)
T 4f9l_D            4 LTQSPSSLSASLGDTITITCHA-SQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPED   82 (259)
T ss_dssp             EEEECSBCCBCTTCEEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             EEccCCeEEECCCCCEEEEEEc-CCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhh
Confidence            4556778889999999999986 3333345889973  21   11       111223443321   2369999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEeec---ceE-------------------EeCCCceeEeCCCcEEEEEEeCCCCC--
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLVK---PYI-------------------IRGPKDTTVSAGSIIVFECSVGGDAV--  147 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~-------------------~~~~~~~~~~~g~~~~l~C~~~~~p~--  147 (216)
                      ++.|+|..........-...+|.+++.   |..                   ........+..|+.+.|.|.+.|..-  
T Consensus        83 ~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~  162 (259)
T 4f9l_D           83 IATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTR  162 (259)
T ss_dssp             CEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGG
T ss_pred             CEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCccc
Confidence            999999866443221122234444321   110                   01112236788999999999987643  


Q ss_pred             cEEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCCCCCCeEEEEEEEc
Q psy573          148 LTVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       148 ~~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      -.+.|.+..  +.      +.            ..+..+..+     ..|.+.+++.+|.+.|.|....
T Consensus       163 y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~~  231 (259)
T 4f9l_D          163 YYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRED  231 (259)
T ss_dssp             SCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEeC
Confidence            347787631  11      10            112333211     1388889999999999997543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.41  E-value=2.9e-12  Score=86.86  Aligned_cols=95  Identities=17%  Similarity=0.264  Sum_probs=76.1

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCC---eeee--c--------CCeEEEecCCCCCCe
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDR---MSVL--P--------SRSLQLSDVRLEDGG  183 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~---~~~~--~--------~~~l~i~~~~~~d~g  183 (216)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....   ....  .        ...|.|.++..+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            45677778888999999999999998 88999999999998876542   1221  1        357999999999999


Q ss_pred             EEEEEEEcCCcceE-EEEEEEEEecceeee
Q psy573          184 EYVCEAENAVGKIS-ASATLTVQSKYLKVI  212 (216)
Q Consensus       184 ~y~C~~~n~~~~~~-~~~~l~v~~~p~~~~  212 (216)
                      .|+|.+.|..+... ..+.|.|..+|.+..
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~  111 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLE  111 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEE
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEc
Confidence            99999999887643 348888888776544

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.41  E-value=4.3e-12  Score=87.07  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=96.6

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc--c-----cCceEEEec-----CcEEEEcccC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF--E-----NSKRLRLVD-----GTNLAIQDSR   88 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~--~-----~~~~~~~~~-----~~~l~i~~~~   88 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.....+.||+..  .   .+..  .     ..+|+....     ...|+|.+++
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~-s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   83 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   83 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEE-CCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEEEeCCEEEEecCCCEEEEEEE-CCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCC
Confidence            45556777899999999999997 44445689999842  1   1211  1     133444431     2479999999


Q ss_pred             CCCCceEEEEEEcCC---C-CcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCcc
Q psy573           89 KTDDGRYQCVVKNVA---G-TRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSA  158 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~---~-~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~  158 (216)
                      .+|+|.|+|.+.+..   . ........|.|...     |.+.....     ..+.+.|.|.+.+..+. .+.+..    
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~tl~Cl~~gf~P~~~v~~~~----  154 (210)
T 2eys_A           84 LSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQTNVSQSK----  154 (210)
T ss_dssp             GGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC-----CSSSSCEEEEEESCCTTCCCCCCS----
T ss_pred             cccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC-----CCCCceEEEEcccccCCcEecccc----
Confidence            999999999998632   1 11122345666432     33322211     12378899999877544 332111    


Q ss_pred             CCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          159 MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       159 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                        ...........|.+..+...+.|.|.|.+.|..+
T Consensus       155 --~~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          155 --DSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             --STTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             --CcceEccCchhcchhcccccccchhhccCCCceE
Confidence              1112222344577777888889999999887654

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.41  E-value=1.2e-12  Score=81.37  Aligned_cols=92  Identities=18%  Similarity=0.309  Sum_probs=64.7

Q ss_pred             ecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEec-----------cccCceEEEecCcEEEEcccCCCCCceEE
Q psy573           29 VQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPID-----------FENSKRLRLVDGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   96 (216)
                      ..+..+.+.+|++++|.|.+... .+...+.|++++..+.           ....+|+.+..+.+|.|.+++.+|+|.|+
T Consensus         8 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~   87 (117)
T 3q0h_A            8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYF   87 (117)
T ss_dssp             EESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEE
T ss_pred             EccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEE
Confidence            34567889999999999987321 2334789999865432           11245666656778999999999999999


Q ss_pred             EEEEcC-CCCcccceeEEEEeecceE
Q psy573           97 CVVKNV-AGTRESTDAVLRVLVKPYI  121 (216)
Q Consensus        97 C~~~~~-~~~~~~~~~~l~v~~~p~~  121 (216)
                      |.+... .+. ....+.|.|..+|..
T Consensus        88 C~v~~~~~g~-~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           88 CIYHTYPDGT-YTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEEEETTCC-EEEEEEEEEECC---
T ss_pred             EEEEECCCCC-eEEEEEEEEEccCcc
Confidence            998653 343 355678888887754

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=78.83  Aligned_cols=79  Identities=22%  Similarity=0.460  Sum_probs=59.5

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-C--cEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-G--TNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      ....+.+|+.+.|.|.+ . .|.+.+.||+++..+....  ++.... +  ..|.|.++..+|+|.|+|.+.+.     .
T Consensus        19 ~~~~v~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~-----~   89 (102)
T 2eo1_A           19 REVQAEAGASATLSCEV-A-QAQTEVTWYKDGKKLSSSS--KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ-----Q   89 (102)
T ss_dssp             EEEEEETTCCEEECCBC-S-CSSSCCEEEETTEECCCCS--SEEEEEETTEEEEEETTCCTTTCSCEEEEETTE-----E
T ss_pred             ccEEEeCCCcEEEEEEe-c-CCCCceEEEECCEECCCCC--CEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC-----c
Confidence            34689999999999998 4 7888999999999885433  333332 2  47999999999999999998542     3


Q ss_pred             ceeEEEEeecc
Q psy573          109 TDAVLRVLVKP  119 (216)
Q Consensus       109 ~~~~l~v~~~p  119 (216)
                      ..+.|.|..+|
T Consensus        90 ~~~~l~V~~p~  100 (102)
T 2eo1_A           90 LSFRLQVAGQC  100 (102)
T ss_dssp             CCEEEEEESCC
T ss_pred             EEEEEEEeCCC
Confidence            34666666543

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.40  E-value=3.9e-12  Score=99.61  Aligned_cols=160  Identities=13%  Similarity=0.151  Sum_probs=99.1

Q ss_pred             EecCCcEEEEeeCCCCCCC---CeeEEeeCCEEeccccCceEEEec------CcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           36 VAAGDTALLECGPPRGHPE---PTLVWKKNGHPIDFENSKRLRLVD------GTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +..+....|.|.+....+.   ..+.|++++..+............      .+.|.|......|.+.|+|.+.+.....
T Consensus       355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~  434 (551)
T 1ntl_A          355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  434 (551)
T ss_pred             eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence            6678899999998444443   589999998765321111001111      2357777777778899999998765522


Q ss_pred             -ccceeEEE--EeecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCC---CeeeecCCe------E
Q psy573          107 -ESTDAVLR--VLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPED---RMSVLPSRS------L  172 (216)
Q Consensus       107 -~~~~~~l~--v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~---~~~~~~~~~------l  172 (216)
                       ....+.+.  ...+|.+...+....+..|+.+.|.|.+.+..+  ..|.|++++..+...   ......+++      |
T Consensus       435 ~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~l  514 (551)
T 1ntl_A          435 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSKL  514 (551)
T ss_pred             CeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccceeCCCCCEEEEEEE
Confidence             11222222  335566544433334556889999999988543  479999999876421   111122233      4


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcc
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+......+.+.|+|.|.|....
T Consensus       515 ~v~~~~~~~~~~ytC~V~h~~l~  537 (551)
T 1ntl_A          515 NVQKSNWEAGNTFTCSVLHEGLH  537 (551)
T ss_pred             EEcHHHcCCCCeEEEEEEECCCC
Confidence            44444444588999999987654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.40  E-value=2.6e-12  Score=87.82  Aligned_cols=81  Identities=15%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .+.+|+.+.|.|.+.|.|.|.+.|++............ .....|.|.++..+|+|.|.|.+.|..+..+..+.|.|..+
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~   91 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSF   91 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeC
Confidence            44589999999999999999999998432211111111 12356999999999999999999999988888899999877


Q ss_pred             ce
Q psy573          208 YL  209 (216)
Q Consensus       208 p~  209 (216)
                      |.
T Consensus        92 p~   93 (202)
T 1vca_A           92 PK   93 (202)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.40  E-value=3.3e-13  Score=86.45  Aligned_cols=83  Identities=23%  Similarity=0.388  Sum_probs=64.6

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc--------CceEEEe------cCcEEEEcccC
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--------SKRLRLV------DGTNLAIQDSR   88 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------~~~~~~~------~~~~l~i~~~~   88 (216)
                      .+|.|...|....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....        ..+....      .++.|.|.+++
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEA-VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEE-eeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            46889899999999999999999998 788999999999766442110        1122221      24589999999


Q ss_pred             CCCCceEEEEEEcCCCCc
Q psy573           89 KTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~  106 (216)
                      .+|+|.|+|.+.|..|..
T Consensus        99 ~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             GGGCEEEEEEEECCTTSS
T ss_pred             cccCEEEEEEEEecCCcc
Confidence            999999999999987764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.40  E-value=5.4e-12  Score=84.92  Aligned_cols=94  Identities=16%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..+.....++.|.|.++..+|+|.|+|.+.|..+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   81 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR   81 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence            4566677788899999999999999988999999999987764   3344555667899999999999999999998875


Q ss_pred             c--eEEEEEEEEEecceee
Q psy573          195 K--ISASATLTVQSKYLKV  211 (216)
Q Consensus       195 ~--~~~~~~l~v~~~p~~~  211 (216)
                      .  ....+.+.+..+|.+.
T Consensus        82 ~~~~~~~~~l~v~~~p~~~  100 (189)
T 2v5t_A           82 GEIDFRDIIVIVNVPPAIS  100 (189)
T ss_dssp             TEEEEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEEecCCCCcc
Confidence            4  3355667777666543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=84.34  Aligned_cols=99  Identities=21%  Similarity=0.485  Sum_probs=66.9

Q ss_pred             ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee---------CCEEeccccCceEEEec----CcEE
Q psy573           16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK---------NGHPIDFENSKRLRLVD----GTNL   82 (216)
Q Consensus        16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~---------~~~~~~~~~~~~~~~~~----~~~l   82 (216)
                      +...+...+..+...+..+.+.+|++++|.|.+ .+.+.+.+.|++         ++..+   ...++....    +.+|
T Consensus        30 ~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~i~~~~~~~~---~~~r~~~~~~~~~~~~L  105 (145)
T 1z9m_A           30 AMADINLSQDDSQPWTSDETVVAGGTVVLKCQV-KDHEDSSLQWSNPAQQTLYFGEKRAL---RDNRIQLVTSTPHELSI  105 (145)
T ss_dssp             --------CCTTCCBCCCEEEETTSCEEEEEEC-SCCTTCCEEEECTTCCEEEETTEECS---CCTTEEEEEECSSEEEE
T ss_pred             HhhhheecccceecCCceEEEEcCCCEEEEEEE-cCCCCcEEEEECCCCcEEEECCceec---ccCCEEEecCCCCeEEE
Confidence            333333334455667888999999999999998 666778999994         22222   123333222    4579


Q ss_pred             EEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecce
Q psy573           83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY  120 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  120 (216)
                      .|.+++.+|+|.|+|.+.+. +. ....+.|.|..+|.
T Consensus       106 ~I~~v~~~DsG~Y~C~~~n~-~~-~~~~~~L~V~~~P~  141 (145)
T 1z9m_A          106 SISNVALADEGEYTCSIFTM-PV-RTAKSLVTVLGIPQ  141 (145)
T ss_dssp             EECSCCGGGCEEEEEEECSS-SC-EEEEEEEEEECCCC
T ss_pred             EECCCChhhCEEEEEEEEcC-CC-ceEEEEEEEEeCCC
Confidence            99999999999999999988 54 35567777776653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.39  E-value=2.9e-12  Score=87.72  Aligned_cols=98  Identities=13%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|... +.+ ..+....+.+|+.++|.|.+..+.|.+.+.|++++..+..       ...+..|.|.+++.+|+
T Consensus        79 s~~~~l~V~~~-p~~-~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-------~~~~~~L~i~~v~~~D~  149 (204)
T 3sgj_C           79 SDPVQLEVHIG-WLL-LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-------FHHNSDFYIPKATLKDS  149 (204)
T ss_dssp             CCCEEEEEECS-SEE-EECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGC
T ss_pred             cccEEEEEecC-ceE-ecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-------ccCCceEEECcCCcccC
Confidence            44556666543 333 3344478889999999999844446689999999987632       22356899999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      |.|+|.+.|..+...+..+.|.|..++
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          150 GSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            999999999654445666777777654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=89.78  Aligned_cols=98  Identities=23%  Similarity=0.371  Sum_probs=77.0

Q ss_pred             hhhceeeEEeec--------------cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec
Q psy573           13 EEKKKLKIEMLR--------------EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD   78 (216)
Q Consensus        13 ~~~~~l~v~~~~--------------~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   78 (216)
                      +..+.|.|...+              |.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...        .
T Consensus        93 s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~--------~  163 (218)
T 3k0w_A           93 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHE--------T  163 (218)
T ss_dssp             CCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTC--------C
T ss_pred             eeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCC--------C
Confidence            445667666542              566777778899999999999998 78889999999999887432        2


Q ss_pred             CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      ...|.|.++..+|+|.|+|.+.|..+...+..+.|.|....
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence            35799999999999999999999877755667777776533

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.39  E-value=2e-12  Score=86.69  Aligned_cols=94  Identities=26%  Similarity=0.389  Sum_probs=73.3

Q ss_pred             HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCC
Q psy573           12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      .+..+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+....      .....|.|.++  +
T Consensus        87 ~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~------~~~~~L~i~~~--~  156 (182)
T 1rhf_A           87 ISQPVWLTVEG-VPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGV--T  156 (182)
T ss_dssp             ECCCEEEEEEC-SCEEEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSE------ESSEEEEECCC--S
T ss_pred             EEEEEEEEEec-CCeEEecCcceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCCC------CCceEEEEecc--c
Confidence            44566777765 4778888888899999999999998 788888 999999998873221      14567999988  5


Q ss_pred             CCceEEEEEEcCCCCcccceeEEEE
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |+|.|+|.+.|..|...+..+.|.|
T Consensus       157 d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          157 QSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCeEEEEEEECCCCCcccceEEEEe
Confidence            8999999999988765444566655

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.39  E-value=4.3e-12  Score=85.21  Aligned_cols=100  Identities=20%  Similarity=0.390  Sum_probs=72.9

Q ss_pred             hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEee---CCEE-eccccCceEEEecC---cEEEEc
Q psy573           14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK---NGHP-IDFENSKRLRLVDG---TNLAIQ   85 (216)
Q Consensus        14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~---~~~~-~~~~~~~~~~~~~~---~~l~i~   85 (216)
                      ..+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.| .+.+.|++   ++.. +......++....+   ..|.|.
T Consensus        74 ~~~~l~V~~-~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  151 (184)
T 3b5h_A           74 GTANIQLHG-PPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE  151 (184)
T ss_dssp             CEEEEEECC-SCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred             cEEEEEEec-CCceeecCCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence            445666654 4777777777889999999999998 6777 78999999   4443 32222244444322   379999


Q ss_pred             ccC-CCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           86 DSR-KTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        86 ~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +++ .+|+|.|.|.+.|..|.. ...+.|.|.
T Consensus       152 ~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  182 (184)
T 3b5h_A          152 NLNMEADPGQYRCNGTSSKGSD-QAIITLRVR  182 (184)
T ss_dssp             SCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             eccccccCceEEEEEEeCCCcc-eEEEEEEEe
Confidence            999 999999999999988765 334566554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.38  E-value=4.3e-12  Score=86.98  Aligned_cols=91  Identities=27%  Similarity=0.409  Sum_probs=71.8

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC------------C-CCCeeeecCCeEEEecCCCCCCeEEE
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM------------P-EDRMSVLPSRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~------------~-~~~~~~~~~~~l~i~~~~~~d~g~y~  186 (216)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            . ..+... ....|.|.++..+|+|.|+
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~~D~G~Y~   81 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGEYT   81 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEEEE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCcccCeEEE
Confidence            3455567778999999999999998899999999987652            1 122322 3478999999999999999


Q ss_pred             EEEEcCCc--ceEEEEEEEEEecceee
Q psy573          187 CEAENAVG--KISASATLTVQSKYLKV  211 (216)
Q Consensus       187 C~~~n~~~--~~~~~~~l~v~~~p~~~  211 (216)
                      |.+.|..|  .....+.|.|..+|.+.
T Consensus        82 C~~~~~~g~~~~~~~~~l~V~~~p~~~  108 (212)
T 1f97_A           82 CMVSEEGGQNYGEVSIHLTVLVPPSKP  108 (212)
T ss_dssp             EEEEETTSSSEEEEEEEEEEEBCCCCC
T ss_pred             EEEEccCCCcccEEEEEEEEEcCCCCc
Confidence            99999877  56778888888777554

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.38  E-value=8.2e-13  Score=89.45  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eecc-------ccCceEEEec-----CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PIDF-------ENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~~-------~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.....+.||+.  ++   .+..       ...+|+....     ...|+|.+++.
T Consensus         3 VtQ~p~~v~v~~G~svtL~C~~-s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~   81 (200)
T 3rgv_A            3 VTQMQGQVTLSENDFLFINCTY-STTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE   81 (200)
T ss_dssp             EECCCSEEEEETTCCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS
T ss_pred             cEECCCEEEEeCCCCEEEEEEe-cCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC
Confidence            4556778899999999999997 3333458999984  21   1110       1134444431     24699999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccCCCC
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMPED  162 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~  162 (216)
                      +|+|.|.|.+.............|.|...     |.+....     .....+.|.|.+.+. |..++.|.+++..+...
T Consensus        82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~-----~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~  155 (200)
T 3rgv_A           82 IDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLR-----DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD  155 (200)
T ss_dssp             TTCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEEE-----ESSSSSCEEEEEESCCTTCCCCCCSSTTCEECC
T ss_pred             ccCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEcc-----CCCCCceEEEEcccccCCeEeEeccCCcEEeec
Confidence            99999999997432112223345666542     2222111     112346899999776 44468999998876544

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.38  E-value=6.8e-12  Score=76.98  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC--------------------CCCCeeeecCCeEEEecCCCCCCeEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ..+.+|+++.|.|.....+.+.+.|+|+....                    ..++.....+++|.|.+++.+|+|.|+|
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc   89 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTL   89 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEE
Confidence            37889999999998644445679999975322                    1345566677899999999999999999


Q ss_pred             EEEcCCc-ceEEEEEEEEEec
Q psy573          188 EAENAVG-KISASATLTVQSK  207 (216)
Q Consensus       188 ~~~n~~~-~~~~~~~l~v~~~  207 (216)
                      .+.+..+ ....++.|.|..+
T Consensus        90 ~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           90 HVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             EEEETTSCCEEEEEEEEEECC
T ss_pred             EEEeCCCcEEEEEEEEEEecC
Confidence            9999876 4777888887653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.37  E-value=5.1e-12  Score=85.98  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=58.1

Q ss_pred             hhhceeeEEeec--cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEccc
Q psy573           13 EEKKKLKIEMLR--EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDS   87 (216)
Q Consensus        13 ~~~~~l~v~~~~--~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~   87 (216)
                      +..+.|.|...+  |.+...+ ...+.+|+.++|.|.+ .+. .+.+.|++++..+...........   ....|.|.++
T Consensus        88 s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v  164 (198)
T 1ugn_A           88 SDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDS-QVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPV  164 (198)
T ss_dssp             CCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEEC-SSC-CSEEEEEEC------CEEEC------CCEEEEEECCC
T ss_pred             CccEEEEEcccccCCccccCC-ccccCCCCcEEEEEec-CCC-CcEEEEEECCCccCCccccccccCCCcceeEEEeccc
Confidence            456777776632  3333333 3678899999999998 555 679999999887632111100111   1368999999


Q ss_pred             CCCCCceEEEEEEcCCC
Q psy573           88 RKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~  104 (216)
                      +.+|+|.|+|.+.|..+
T Consensus       165 ~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          165 SPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CTTSCEEEEEEEECTTS
T ss_pred             CcccCeEEEEEEEeCCC
Confidence            99999999999998764

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=9.8e-13  Score=82.00  Aligned_cols=78  Identities=26%  Similarity=0.405  Sum_probs=59.6

Q ss_pred             CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-----cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573           40 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR  114 (216)
Q Consensus        40 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~  114 (216)
                      +...|.|.+ .+.|.+.+.|++++..+...........     .++.|.|.++..+|+|.|.|.+.|..|.. ...+.|.
T Consensus        21 ~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~   98 (118)
T 1wwc_A           21 LEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGH   98 (118)
T ss_dssp             CEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred             cceEEEEEe-eeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeE-eeEEEEE
Confidence            667899998 7889999999999998854433333222     24579999999999999999999988765 4456666


Q ss_pred             Eeecc
Q psy573          115 VLVKP  119 (216)
Q Consensus       115 v~~~p  119 (216)
                      |...|
T Consensus        99 v~~~P  103 (118)
T 1wwc_A           99 FLKEP  103 (118)
T ss_dssp             CSCCC
T ss_pred             EccCC
Confidence            66555

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.36  E-value=8.4e-12  Score=85.57  Aligned_cols=86  Identities=27%  Similarity=0.529  Sum_probs=66.4

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............+  ..|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus       123 ~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-  200 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-  200 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-
T ss_pred             CCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-
Confidence            4556789999999999998 788999999999999885443333332222  389999999999999999999988764 


Q ss_pred             cceeEEEEee
Q psy573          108 STDAVLRVLV  117 (216)
Q Consensus       108 ~~~~~l~v~~  117 (216)
                      ...+.|.|..
T Consensus       201 ~~~~~l~V~~  210 (212)
T 2r15_A          201 TSDFTVSVFI  210 (212)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            4455666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=4.9e-12  Score=96.47  Aligned_cols=93  Identities=29%  Similarity=0.539  Sum_probs=72.9

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC-CC----CCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PE----DRMSVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      +|.+...+....+.+|+.+.|.|.+ +.|.|.+.|+++++.+ ..    .+.....+++|.|.+++.+|+|.|+|.|.|.
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  419 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS  419 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECS
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcC
Confidence            4666677788899999999999999 5688999999965433 11    2444556788999999999999999999999


Q ss_pred             CcceEEEEEEEEEecceee
Q psy573          193 VGKISASATLTVQSKYLKV  211 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p~~~  211 (216)
                      .|..+.++.+.|.+.|...
T Consensus       420 ~G~~~~~~~~~v~~~~~~~  438 (440)
T 3zyj_A          420 VGNTTASATLNVTGTHHHH  438 (440)
T ss_dssp             SCEEEEEEEEEEC------
T ss_pred             CCcEEEEEEEEEecccccc
Confidence            9999999999999877543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.35  E-value=5.8e-12  Score=83.46  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=68.8

Q ss_pred             hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCC
Q psy573           13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD   92 (216)
Q Consensus        13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   92 (216)
                      +..+.|.|..  +.....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+..       ...+..|.|.+++.+|+
T Consensus        76 s~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-------~~~~~~L~i~~v~~~d~  146 (170)
T 3ry4_A           76 SDPVHLTVLF--EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-------SHLDPTFSIPQANHSHS  146 (170)
T ss_dssp             CCCEEEEEEC--CSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-------ESSCCEEEESSCCGGGC
T ss_pred             eEeEEEEEEC--CceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-------cCCCCeEEEEeccccCC
Confidence            3445555554  33444555677899999999999744556689999999987732       22356799999999999


Q ss_pred             ceEEEEEEcCCCCcccceeEEEE
Q psy573           93 GRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        93 g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |.|+|.+.|..+...+..+.|.|
T Consensus       147 G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          147 GDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEEeCcCccccccEEEEE
Confidence            99999999987754455555554

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.35  E-value=1.2e-11  Score=75.83  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=55.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-------cccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+.       .....++....   ..+|.|.+++.+|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRA-SKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             eeccCCeeEEcCCCCEEEEeEE-CCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHH
Confidence            4456677889999999999998 66677899999853  1   111       01123444332   2479999999999


Q ss_pred             CceEEEEEEcCC
Q psy573           92 DGRYQCVVKNVA  103 (216)
Q Consensus        92 ~g~y~C~~~~~~  103 (216)
                      +|.|.|.+.+..
T Consensus        83 sG~Y~C~~~n~~   94 (108)
T 1jhl_L           83 FAMYICQQHNEY   94 (108)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEEEccCC
Confidence            999999998764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.35  E-value=1.7e-12  Score=89.40  Aligned_cols=105  Identities=16%  Similarity=0.258  Sum_probs=69.1

Q ss_pred             hceeeEEe-eccceEecccc-eEEecCCcEEEEeeCCCCC--CCCeeEEeeCCEEeccccC-c-eEE-------EecCcE
Q psy573           15 KKKLKIEM-LREEFRVQPKS-QRVAAGDTALLECGPPRGH--PEPTLVWKKNGHPIDFENS-K-RLR-------LVDGTN   81 (216)
Q Consensus        15 ~~~l~v~~-~~~~~~~~~~~-~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~~~-~-~~~-------~~~~~~   81 (216)
                      .+.|.|.. .+|.+.+.+.. ..+.+|+.++|.|.+ .+.  +.+.+.|++++..+..... . ...       ....+.
T Consensus        94 ~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (213)
T 2x1w_L           94 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST  172 (213)
T ss_dssp             CEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE-EECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEE
T ss_pred             EEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE-ECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEE
Confidence            35555533 23555565554 489999999999998 543  3458999998875421110 0 000       111246


Q ss_pred             EEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceE
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI  121 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  121 (216)
                      |.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..+|.+
T Consensus       173 L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          173 LTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC----
T ss_pred             EEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEeccccc
Confidence            9999999999999999999988765 56778888776654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.34  E-value=4.4e-12  Score=88.08  Aligned_cols=83  Identities=27%  Similarity=0.484  Sum_probs=68.8

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....     ........|.|.++..+|+|.|+|.+.|..+.....+
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            56688999999999999999999999999998775321     1222345799999999999999999999999988888


Q ss_pred             EEEEEecc
Q psy573          201 TLTVQSKY  208 (216)
Q Consensus       201 ~l~v~~~p  208 (216)
                      .|.|...+
T Consensus       107 ~l~V~~~~  114 (231)
T 3ojm_B          107 HLDVVERS  114 (231)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            88887643

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.34  E-value=4.6e-12  Score=86.55  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=66.4

Q ss_pred             ceeEeCCCcEEEEEE---eCCCCCcEEEEeeCCccCCCC------------------Ceee---ecCCeEEEecCCCCCC
Q psy573          127 DTTVSAGSIIVFECS---VGGDAVLTVHWKRLGSAMPED------------------RMSV---LPSRSLQLSDVRLEDG  182 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~---~~~~p~~~i~W~~~~~~~~~~------------------~~~~---~~~~~l~i~~~~~~d~  182 (216)
                      ..++..|+.+.|.|.   +.+.|.+.+.|+|++......                  ....   .....|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            357889999999996   567789999999987543210                  0111   1124699999999999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          183 GEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       183 g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      |.|+|.+.|..|.....+.|.|..+|.+..
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~  111 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSV  111 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeee
Confidence            999999999999999999999988776543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.34  E-value=1.3e-11  Score=76.70  Aligned_cols=86  Identities=22%  Similarity=0.461  Sum_probs=63.8

Q ss_pred             CCceeEeCCCcEEEEEEeCC--CCCcEEEEeeCCccCC--------------CCCeeeecCCeEEEecCCCCCCeEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGG--DAVLTVHWKRLGSAMP--------------EDRMSVLPSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~~~~~--------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      +....+..|+++.|.|...+  .+...+.|++++..+.              ..+.....+..|.|.+++.+|+|.|.|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~   89 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCI   89 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEE
Confidence            45578889999999999876  3345699999754221              1234333456899999999999999999


Q ss_pred             EEc-CCcceEEEEEEEEEeccee
Q psy573          189 AEN-AVGKISASATLTVQSKYLK  210 (216)
Q Consensus       189 ~~n-~~~~~~~~~~l~v~~~p~~  210 (216)
                      +.+ ..|.....+.|.|..+|.+
T Consensus        90 v~~~~~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           90 YHTYPDGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEETTCCEEEEEEEEEECC---
T ss_pred             EEECCCCCeEEEEEEEEEccCcc
Confidence            764 5688888999999988854

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.34  E-value=4.3e-12  Score=78.90  Aligned_cols=88  Identities=33%  Similarity=0.547  Sum_probs=58.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCC----eeEEeeCCEEec-----------cccCceEEEec--------CcEEEEccc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEP----TLVWKKNGHPID-----------FENSKRLRLVD--------GTNLAIQDS   87 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~----~~~W~~~~~~~~-----------~~~~~~~~~~~--------~~~l~i~~~   87 (216)
                      |..+.+.+|++++|.|.+..+.+.+    .+.|++++....           .....+.....        +.+|.|.++
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            4447889999999999873333333    499999743210           01134444443        458999999


Q ss_pred             CCCCCceEEEEEEc-CCCCcccceeEEEEeecc
Q psy573           88 RKTDDGRYQCVVKN-VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        88 ~~~d~g~y~C~~~~-~~~~~~~~~~~l~v~~~p  119 (216)
                      +.+|+|.|.|.+.+ ..+. ....+.|.|..+|
T Consensus        87 ~~~D~G~Y~C~v~~~~~~~-~~~~~~L~V~~~P  118 (118)
T 3udw_C           87 RVEDEGNYTCLFVTFPQGS-RSVDIWLRVLAKP  118 (118)
T ss_dssp             CGGGCEEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred             ChHHCeEEEEEEEECCCCC-ccceEEEEEEeCC
Confidence            99999999999988 4443 3455677776544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.33  E-value=2.3e-11  Score=98.40  Aligned_cols=167  Identities=16%  Similarity=0.220  Sum_probs=112.6

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeE-Ee--eCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WK--KNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C   97 (216)
                      +|.+. .+....+.+|+.+.|.|.+ .+.|.+.+. |+  +++..+....  ......   .++|.|.++...|+|.|+|
T Consensus       165 ~p~~~-~~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          165 TPHFL-RIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             SCEEC-CCCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             ccccc-cccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCccccccc--eEEeccccceEEEEEcccccccCeEEEE
Confidence            34454 6667899999999999998 788888887 88  6776653221  111111   2579999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC----CCc--EEEEeeCCccCCCCCeeeecCCe
Q psy573           98 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD----AVL--TVHWKRLGSAMPEDRMSVLPSRS  171 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~--~i~W~~~~~~~~~~~~~~~~~~~  171 (216)
                      .+.|..|...+....|.|..+|.....+.. .......+.|.|.....    +..  .+.|...+...  ..........
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~-~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~  317 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPIAPPQL-ASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW--NDRQPVDSTS  317 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBSSCCEE-EEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC--EEEEECCSSE
T ss_pred             EEECCCCCcceeeEEEEEecCCCCCCCcce-eccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCc--eEEeccCcce
Confidence            999988863455567888777754433332 22345678888876322    222  46666543221  1112224467


Q ss_pred             EEEecCCCCCCeEEEEEEE--cCCcceE
Q psy573          172 LQLSDVRLEDGGEYVCEAE--NAVGKIS  197 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~--n~~~~~~  197 (216)
                      +.|.++.+.+...|.|.+.  |..|...
T Consensus       318 ~~i~~L~p~t~Y~~~V~A~~~N~~G~s~  345 (731)
T 2v5y_A          318 YKIGHLDPDTEYEISVLLTRPGEGGTGS  345 (731)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSTTCSCC
T ss_pred             EEEeCCCCCCEEEEEEEEEecCCCcccc
Confidence            8999999888888888888  8888644

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.33  E-value=3.1e-11  Score=82.28  Aligned_cols=82  Identities=17%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             eeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      ..+..|+++.|.|.+ +.|.|  .|.|.+.+..+  .+.. ......|.|.+++.+|.|.|.|.+.|..+.....+.|.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV   93 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   93 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence            588899999999999 88877  99999976554  2222 223467999999999999999999999988888999999


Q ss_pred             Eecceeee
Q psy573          205 QSKYLKVI  212 (216)
Q Consensus       205 ~~~p~~~~  212 (216)
                      ..+|....
T Consensus        94 ~~~P~~~~  101 (210)
T 1gsm_A           94 YAFPNQLT  101 (210)
T ss_dssp             EBCCSEEE
T ss_pred             EecCCCcE
Confidence            98886443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.33  E-value=4e-12  Score=97.93  Aligned_cols=82  Identities=29%  Similarity=0.542  Sum_probs=69.1

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC----CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE----DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+..    .+.....+++|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  471 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPA  471 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEE
Confidence            4566889999999999999999999999999877642    334444567899999999999999999999999998888


Q ss_pred             EEEEEe
Q psy573          201 TLTVQS  206 (216)
Q Consensus       201 ~l~v~~  206 (216)
                      .|.|.+
T Consensus       472 ~l~V~~  477 (477)
T 2id5_A          472 HLHVRS  477 (477)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            888763

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.32  E-value=6.3e-12  Score=85.35  Aligned_cols=87  Identities=20%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee---ecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|+|++..+.......   .....|.|.+++.+|+|.|+|.+.|..|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence            4556555555 7889999999999987 678999999998765422111   2346799999999999999999999987


Q ss_pred             c--eEEEEEEEEEe
Q psy573          195 K--ISASATLTVQS  206 (216)
Q Consensus       195 ~--~~~~~~l~v~~  206 (216)
                      .  .+..+.|.|..
T Consensus        83 ~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           83 WSQPSDPLELVMTG   96 (196)
T ss_dssp             EBCCCCCEEEEEEC
T ss_pred             ccCCCccEEEEecC
Confidence            2  45566777764

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.32  E-value=4.1e-11  Score=80.01  Aligned_cols=158  Identities=20%  Similarity=0.226  Sum_probs=98.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      ..+.+.|+...+..|+++.|+|.+ . -+.+. +.|-..-...      ......+ ..|.|.+++  |+|.|.|.+.-.
T Consensus         3 f~v~v~P~~~~V~~G~S~~l~Cs~-~-c~~p~~~glet~l~~~------~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~   72 (192)
T 1zxq_A            3 FEVHVRPKKLAVEPKGSLEVNCST-T-CNQPEVGGLETSLNKI------LLDEQAQWKHYLVSNIS--HDTVLQCHFTCS   72 (192)
T ss_dssp             CCEEEESSEEEECTTEEEEEEEEE-S-CSSCSEEEEECSSEEE------EEEEETTEEEEEEEEEC--SCEEEEEEEEET
T ss_pred             cEEEEeCCCcEEeCCCcEEEEEEC-C-CCCccccccccccCce------EEcCCCCeEEEEEeccc--cCCeeEEEEECC
Confidence            356677888889999999999997 3 34433 4453321111      0111112 369999998  788999999864


Q ss_pred             CCCcccceeEEEEeecceE-EeCCCceeEeCCCcEEEEEEeCC-CCCc--EEEEeeCCccCCCCCee----eecCCeE-E
Q psy573          103 AGTRESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMS----VLPSRSL-Q  173 (216)
Q Consensus       103 ~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~----~~~~~~l-~  173 (216)
                      .. .....+.+.|+.+|.. .+.+....+.+|+.++|.|.+.+ .|..  ++.|++++..+......    .....++ .
T Consensus        73 ~~-~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~  151 (192)
T 1zxq_A           73 GK-QESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF  151 (192)
T ss_dssp             TE-EEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEE
T ss_pred             Cc-ceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEE
Confidence            33 3356788888887743 22222346889999999999964 5644  48999988765321100    0011122 2


Q ss_pred             EecCCCCCCe-EEEEEEEcCC
Q psy573          174 LSDVRLEDGG-EYVCEAENAV  193 (216)
Q Consensus       174 i~~~~~~d~g-~y~C~~~n~~  193 (216)
                      ...+..+|.| .|+|.|.-..
T Consensus       152 ~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          152 NSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             EEECCGGGGGCEEEEEEEEEC
T ss_pred             EEecchhhCCceEEEEEEecC
Confidence            2345566666 9999998665

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.32  E-value=2.9e-12  Score=87.89  Aligned_cols=79  Identities=25%  Similarity=0.383  Sum_probs=60.7

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.|...+ ...+.+|+.+.|.|.+ .+. |.+.+.|++++..+....  ++.... ...|.|.++..+|+|.|+|.+.|
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGIYEVILKD  192 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECCCC--CCCCSSEEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEE-eCCCCCCEEEEEECCEECCCCC--ceEcCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            34444433 4678999999999998 676 899999999999885422  222221 23699999999999999999999


Q ss_pred             CCCCc
Q psy573          102 VAGTR  106 (216)
Q Consensus       102 ~~~~~  106 (216)
                      ..|..
T Consensus       193 ~~G~~  197 (207)
T 3rbs_A          193 DRGKD  197 (207)
T ss_dssp             TTEEE
T ss_pred             CCCEE
Confidence            88765

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.31  E-value=8.1e-12  Score=79.40  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe--ccccCceEEEec---CcEEEEcccCCCCCceEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI--DFENSKRLRLVD---GTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~--~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C   97 (216)
                      ..+...|....+.+|++++|.|.+ .+.  +.+.||++  +...  ......++....   ...|.|.+++.+|+|.|+|
T Consensus        18 ~~v~q~p~~~~v~~G~~v~L~C~~-~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C   94 (133)
T 3khq_A           18 SQIWQHPRFAAKKRSSMVKFHCYT-NHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFC   94 (133)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEE-SSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CceEEcCceEEEeCCCeEEEEEEe-CCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEE
Confidence            456677888899999999999998 444  78999997  2211  112334444432   2369999999999999999


Q ss_pred             EEEcCCCC---cccceeEEEEeecceEEe
Q psy573           98 VVKNVAGT---RESTDAVLRVLVKPYIIR  123 (216)
Q Consensus        98 ~~~~~~~~---~~~~~~~l~v~~~p~~~~  123 (216)
                      .+.+..+.   .......|.|...|.+..
T Consensus        95 ~a~n~~g~~~~~~g~gt~L~V~~~p~~~~  123 (133)
T 3khq_A           95 KQKCDSANHNVTDSCGTELLVLGFSTLDQ  123 (133)
T ss_dssp             EESSCC-------CCCEEEEEC-------
T ss_pred             EEEeCCCCcceeECCCEEEEEEecccchh
Confidence            99886541   123456777777655433

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.31  E-value=3e-11  Score=82.30  Aligned_cols=86  Identities=19%  Similarity=0.343  Sum_probs=65.1

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCC-----cEEEEeeC-CccCCC-CCeeeec------CCeEEEecCCCCCCeEEEEEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAV-----LTVHWKRL-GSAMPE-DRMSVLP------SRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~-----~~i~W~~~-~~~~~~-~~~~~~~------~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      ..+....+.+|+.+.|.|.+.+.|.     +.+.|+++ +..... .+.....      ...|.|.+++.+|+|.|+|.+
T Consensus         7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   86 (202)
T 3bp6_B            7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV   86 (202)
T ss_dssp             CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEE
Confidence            3445568889999999999988876     88999994 433322 2332222      257999999999999999999


Q ss_pred             EcCCcceEEEEEEEEEecc
Q psy573          190 ENAVGKISASATLTVQSKY  208 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~~p  208 (216)
                      .|..+.....+.|.|..++
T Consensus        87 ~~~~~~~~~~~~l~V~~~~  105 (202)
T 3bp6_B           87 ICGAAWDYKYLTVKVKASY  105 (202)
T ss_dssp             EETTEEEEEEEEEEEEBCC
T ss_pred             EeCCCcceEEEEEEecCCC
Confidence            9999988888888888753

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=99.31  E-value=4.3e-11  Score=81.49  Aligned_cols=153  Identities=11%  Similarity=0.138  Sum_probs=87.2

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecccc------CceEEEec-----CcEEEEcccCCCCCce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDFEN------SKRLRLVD-----GTNLAIQDSRKTDDGR   94 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~~~------~~~~~~~~-----~~~l~i~~~~~~d~g~   94 (216)
                      |..+.+.+|+.++|.|.+ .+.....+.||+..  .   .+....      .+|+....     ...|+|.+++.+|+|.
T Consensus         6 p~~~~v~~G~~vtL~C~~-s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~   84 (200)
T 2nw2_A            6 PTEMTATEGAIVQINCTY-QTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSAS   84 (200)
T ss_dssp             CSEEEEETTCCEEEEEEC-CCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCeEEEccCCCEEEEEEE-CCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence            677889999999999997 44444579999842  1   111001      34444431     2379999999999999


Q ss_pred             EEEEEEcC---CCCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee
Q psy573           95 YQCVVKNV---AGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV  166 (216)
Q Consensus        95 y~C~~~~~---~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~  166 (216)
                      |+|.+...   ..........|.|...     |.+...     ....+.+.|.|.+.+..+. +. ..++.   ......
T Consensus        85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~-----~~~~~~~tl~Cl~~gf~P~-~~-v~~~~---~~~~~~  154 (200)
T 2nw2_A           85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQL-----RDSKSSDKSVCLFTDFDSQ-TN-VSQSK---DSDVYI  154 (200)
T ss_dssp             EEEEEC---CCCCCEECCCEEEEEECCCSSCCCEEEEE-----EECC--CCEEEEEESCCTT-CC-CCCCS---SSSEEE
T ss_pred             EEEEEEcCCcceeeeeCCCEEEEEecCcccCCCeEEEc-----CCCCCCceEEEEeecccCC-cE-eeccc---ccceEe
Confidence            99998752   1111122345666542     222211     1122378999999877544 21 01111   111111


Q ss_pred             ecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          167 LPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .....+.+......+.|.|.|.+.|..+
T Consensus       155 t~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (200)
T 2nw2_A          155 TDKCVLDMRSMDFKSNSAVAWSNKSDFA  182 (200)
T ss_dssp             CCCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred             cCchhhhhhhcccccccceeccCCCceE
Confidence            2233455556666677889998776554

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.30  E-value=3.4e-12  Score=73.20  Aligned_cols=61  Identities=25%  Similarity=0.460  Sum_probs=49.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc-CCCCCceEEEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-RKTDDGRYQCVVKN  101 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~  101 (216)
                      .|+...+..|++++|.|.+ .+.|  .+.|+|++..+...        .++.|.|.++ ..+|+|.|+|.+..
T Consensus         5 ~p~~~v~~~G~~v~L~C~~-~g~P--~i~W~kdg~~l~~~--------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            5 NIEYKVSISGTSVELTCPL-DSDE--NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCCEEEEETTEEEEECSS-CCCS--SCEEEETTEECTTC--------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CCceeEEEcCCeEEEEEEC-CCCC--cEEEEECCEECcCC--------CCCEEEECccCccCcCEEEEEEEcc
Confidence            3556778899999999998 6666  39999999988432        3567999996 78999999999865

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.30  E-value=1.9e-11  Score=82.23  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-  195 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-  195 (216)
                      .+|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|+|++..      .......|.|.+++.+|+|.|+|.+.|..|. 
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   78 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWS   78 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEEB
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCcc
Confidence            45666655554 7899999999999987 7789999999865      2345678999999999999999999998763 


Q ss_pred             -eEEEEEEEEEe
Q psy573          196 -ISASATLTVQS  206 (216)
Q Consensus       196 -~~~~~~l~v~~  206 (216)
                       .+..+.|.|..
T Consensus        79 ~~s~~~~l~V~~   90 (184)
T 2gi7_A           79 LPSDQLELVATG   90 (184)
T ss_dssp             CCCCCEEEEEES
T ss_pred             CCCCCEEEEecC
Confidence             34456677754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.29  E-value=1e-11  Score=85.82  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             hhhceeeEEee--ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCC
Q psy573           13 EEKKKLKIEML--REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        13 ~~~~~l~v~~~--~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      +..+.|.|...  +|.+...+ ...+.+|+.++|.|.. .+.+.+.+.|+|+|..+..   .......++.|.|.+++.+
T Consensus        93 s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~---~~~~~~~~~~L~I~~v~~~  167 (218)
T 1uct_A           93 SDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLP---QHQSGEHPANFSLGPVDLN  167 (218)
T ss_dssp             CCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCC---SEEECSSSEEEECCSCCGG
T ss_pred             cCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCcccc---cccCCCccCEEEEccCCcc
Confidence            45566777652  34454455 5578999999999965 4567789999999886632   1222234568999999999


Q ss_pred             CCceEEEEEEcCCC----CcccceeEEEEeec
Q psy573           91 DDGRYQCVVKNVAG----TRESTDAVLRVLVK  118 (216)
Q Consensus        91 d~g~y~C~~~~~~~----~~~~~~~~l~v~~~  118 (216)
                      |+|.|+|.+.+...    ...+..+.|.|...
T Consensus       168 D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          168 VSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             GCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             cCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            99999999987532    12244556666543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.29  E-value=4.3e-11  Score=73.38  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-------cccCceEEEec---CcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~---~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+.       .....++....   ..+|.|.+++.+
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQA-SQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE   83 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEeeCCEEEecCCCcEEEEEee-ccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence            45556777899999999999998 55567789999863  1   111       01133444331   347999999999


Q ss_pred             CCceEEEEEEcC
Q psy573           91 DDGRYQCVVKNV  102 (216)
Q Consensus        91 d~g~y~C~~~~~  102 (216)
                      |+|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (109)
T 2q20_A           84 DIATYYCQQYDN   95 (109)
T ss_dssp             GCEEEEEEECSS
T ss_pred             hCEEEEEEEeeC
Confidence            999999999864

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=7.6e-12  Score=75.79  Aligned_cols=77  Identities=26%  Similarity=0.464  Sum_probs=60.5

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ...+.+|+.+.|.|.+. .|.+.+.|++++..+... +......   ..|.|.++..+|+|.|+|.+.|    ...++.|
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~~l   94 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRL   94 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT----EECCEEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----CcEEEEE
Confidence            34788999999999998 888999999999887543 3333322   4799999999999999999943    4556778


Q ss_pred             EEEecc
Q psy573          203 TVQSKY  208 (216)
Q Consensus       203 ~v~~~p  208 (216)
                      .|.++|
T Consensus        95 ~V~~p~  100 (102)
T 2eo1_A           95 QVAGQC  100 (102)
T ss_dssp             EEESCC
T ss_pred             EEeCCC
Confidence            887664

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.29  E-value=7.8e-12  Score=87.95  Aligned_cols=92  Identities=18%  Similarity=0.307  Sum_probs=66.0

Q ss_pred             hceeeEEee--ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc---------------------
Q psy573           15 KKKLKIEML--REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---------------------   70 (216)
Q Consensus        15 ~~~l~v~~~--~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---------------------   70 (216)
                      .+.|.|...  ++.+.+. +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....                     
T Consensus       124 ~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (250)
T 2fbo_J          124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE  202 (250)
T ss_dssp             EEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE-ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTT
T ss_pred             eEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe-cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCce
Confidence            455666543  3445444 335677789999999998 677888999999987663321                     


Q ss_pred             -CceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           71 -SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        71 -~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                       ..+........|.|.+++.+|+|.|+|.+.|..|...
T Consensus       203 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g  240 (250)
T 2fbo_J          203 IAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD  240 (250)
T ss_dssp             TTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGG
T ss_pred             EecccccCCccEEEEecCCcccCEEEEEEecCCccccC
Confidence             1222223457899999999999999999999776543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.28  E-value=1e-11  Score=84.82  Aligned_cols=93  Identities=19%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC------------C-CCCeeeecCCeEEEecCCCCCCeE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM------------P-EDRMSVLPSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~------------~-~~~~~~~~~~~l~i~~~~~~d~g~  184 (216)
                      +..+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            . ..+... ....|.|.++..+|+|.
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTGT   82 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCSE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe-eccEEEEeeCCHHHCcE
Confidence            345556667778999999999999998899999999987652            1 122222 33789999999999999


Q ss_pred             EEEEEEcCCc--ceEEEEEEEEEecceee
Q psy573          185 YVCEAENAVG--KISASATLTVQSKYLKV  211 (216)
Q Consensus       185 y~C~~~n~~~--~~~~~~~l~v~~~p~~~  211 (216)
                      |+|.+.|..|  ..+..+.|.|..+|.+.
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~  111 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKP  111 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCCC
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcCC
Confidence            9999999865  35567777887777543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.28  E-value=8.9e-12  Score=85.25  Aligned_cols=76  Identities=20%  Similarity=0.377  Sum_probs=57.2

Q ss_pred             ecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc-CCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573           37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-RKTDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      .+|+.++|.|.   +.|.+.+.|++++..+............++.|.|.++ +.+|+|.|+|.+.|..+...+..+.|.+
T Consensus       126 ~~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          126 ISGTTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EETTEEEEECS---CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ecCCcEEEEcC---CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            49999999996   5677899999999988543222222234778999999 9999999999999988754344444543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.28  E-value=1.2e-11  Score=83.46  Aligned_cols=97  Identities=15%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             hhhceeeEEee--ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCC
Q psy573           13 EEKKKLKIEML--REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        13 ~~~~~l~v~~~--~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      ++.+.|.|...  +|.+...+ ...+.+|+.++|.|.+ .+ +.+.+.|++++..+..   .......+..|.|.+++.+
T Consensus        86 s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~---~~~~~~~~~~L~I~~v~~~  159 (188)
T 1oll_A           86 SNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHV---QRGYGKVQAEFPLGPVTTA  159 (188)
T ss_dssp             CCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCEE---EEEECSSEEEEEEEECCGG
T ss_pred             CCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEc-CC-CCCEEEEEECCccccc---cccCCCceeEEEECCCCcC
Confidence            45566776542  35555445 4568999999999997 33 4568999999876532   1111223468999999999


Q ss_pred             CCceEEEEEEcCCC--CcccceeEEEE
Q psy573           91 DDGRYQCVVKNVAG--TRESTDAVLRV  115 (216)
Q Consensus        91 d~g~y~C~~~~~~~--~~~~~~~~l~v  115 (216)
                      |+|.|+|.+.+...  ...+..+.|.|
T Consensus       160 d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          160 HRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             GCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             CCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            99999999987542  12244455544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.28  E-value=3.6e-12  Score=90.24  Aligned_cols=139  Identities=14%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             HhhhceeeEEee--ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecCcEEEEccc
Q psy573           12 EEEKKKLKIEML--REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDGTNLAIQDS   87 (216)
Q Consensus        12 ~~~~~~l~v~~~--~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~   87 (216)
                      .++.+.|.|...  +|.+...+. ..+.+|++++|.|.+ .+. .+.+.|+|++..+..........  ..+..|.|.++
T Consensus        93 ~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~-~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v  169 (257)
T 1b6u_A           93 PSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSS-RSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA  169 (257)
T ss_dssp             CCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEEC-SSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEEC
T ss_pred             cCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeC-CCC-CcEEEEEECCcccCcccccccccCCceeEEEEeccc
Confidence            355667777654  345555554 367899999999998 443 46899999987653221111000  12457999999


Q ss_pred             CCCCCceEEEEEEcCCC----CcccceeEEEEeecceEEeCCC-ceeEeCCCcEEEEEEeCCCCCcEEEEeeCC
Q psy573           88 RKTDDGRYQCVVKNVAG----TRESTDAVLRVLVKPYIIRGPK-DTTVSAGSIIVFECSVGGDAVLTVHWKRLG  156 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~  156 (216)
                      +  |+|.|+|.+.+...    ...+..+.|.|...|....++. ......|..+.|.|.+ |.+.+.+.|..-+
T Consensus       170 ~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          170 T--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             C--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--------------------------------------
T ss_pred             c--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            8  99999999986532    2235567788888776542222 2245568889999876 4556677886544

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.28  E-value=7e-12  Score=78.40  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=61.1

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-Eec-----------cccCceEEEe-cCcEEEEcccCCCCCceEEEE
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PID-----------FENSKRLRLV-DGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-~~~-----------~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      .++.+.+|++++|.|..........+.||+... .+.           ....+|..+. .+++|+|.+++.+|+|.|.|.
T Consensus        12 ~pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~   91 (121)
T 2edo_A           12 VHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR   91 (121)
T ss_dssp             BCCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEE
T ss_pred             EEEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEE
Confidence            346889999999999762233456899999753 221           1223455555 567899999999999999999


Q ss_pred             EEcCCCCcccceeEEEEeec
Q psy573           99 VKNVAGTRESTDAVLRVLVK  118 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~~~  118 (216)
                      +.+..+......+.|.|..+
T Consensus        92 v~~~~~~~~~~~~~L~V~~~  111 (121)
T 2edo_A           92 VLKKTGNEQEWKIKLQVLDP  111 (121)
T ss_dssp             EEETTTEEEECCEECEEECC
T ss_pred             EEcCCCcEEEEEEEEEEECC
Confidence            98765443455667777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.28  E-value=7.1e-12  Score=95.91  Aligned_cols=92  Identities=30%  Similarity=0.545  Sum_probs=70.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-CCC----CCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA-MPE----DRMSVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      +|.+...+....+.+|+.+.|.|.+.  |.|.+.|+++++. +..    .+.....+++|.|.+++.+|+|.|+|.|.|.
T Consensus       352 ~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~  429 (452)
T 3zyi_A          352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV  429 (452)
T ss_dssp             CCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECS
T ss_pred             CcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcC
Confidence            34555566777899999999999988  8999999995543 221    2444556688999999999999999999999


Q ss_pred             CcceEEEEEEEEEecceee
Q psy573          193 VGKISASATLTVQSKYLKV  211 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p~~~  211 (216)
                      .|....++.|.|.+.+...
T Consensus       430 ~G~~~~~~~l~v~~~~~~~  448 (452)
T 3zyi_A          430 AGNSNASAYLNVSTAGTHH  448 (452)
T ss_dssp             SCEEEEEEEEEC-------
T ss_pred             CCcEEEEEEEEEEcccccC
Confidence            9999999999998776544

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.28  E-value=5.6e-11  Score=73.78  Aligned_cols=83  Identities=23%  Similarity=0.394  Sum_probs=60.6

Q ss_pred             CceeEeCCCcEEEEEEe-CCCCCc----EEEEeeCCccCC--------------CCCeeeec--------CCeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSV-GGDAVL----TVHWKRLGSAMP--------------EDRMSVLP--------SRSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~-~~~p~~----~i~W~~~~~~~~--------------~~~~~~~~--------~~~l~i~~~~  178 (216)
                      ....+..|+++.|.|.+ .+.+.+    .+.|++++....              ..+.....        ..+|.|.+++
T Consensus         8 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (118)
T 3udw_C            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCC
T ss_pred             CeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecC
Confidence            44678899999999998 444433    499999753211              12222222        4579999999


Q ss_pred             CCCCeEEEEEEEc-CCcceEEEEEEEEEecc
Q psy573          179 LEDGGEYVCEAEN-AVGKISASATLTVQSKY  208 (216)
Q Consensus       179 ~~d~g~y~C~~~n-~~~~~~~~~~l~v~~~p  208 (216)
                      .+|+|.|.|.+.+ ..+.....+.|.|.++|
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             hHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            9999999999998 77788888899988765

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.28  E-value=1.5e-11  Score=83.57  Aligned_cols=88  Identities=27%  Similarity=0.438  Sum_probs=68.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  . ......+..|.|.++..+|+|.|+|.+.|..
T Consensus       113 ~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~--~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  188 (201)
T 3s97_C          113 PADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPS--T-AEISTSGAVLKIFNIQLEDEGIYECEAENIR  188 (201)
T ss_dssp             EEEEEEECCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCT--T-CEEETTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCceEecCCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCC--c-eeecCCCCEEEEccCChhhCEEEEEEEEecC
Confidence            4556666667889999999999998 7788899999999986632  1 2223456789999999999999999999987


Q ss_pred             CCcccceeEEEEe
Q psy573          104 GTRESTDAVLRVL  116 (216)
Q Consensus       104 ~~~~~~~~~l~v~  116 (216)
                      |.. ...+.|.|.
T Consensus       189 g~~-~~~~~l~V~  200 (201)
T 3s97_C          189 GKD-KHQARIYVQ  200 (201)
T ss_dssp             EEE-EEEEEEEEE
T ss_pred             Cce-eeeEEEEEe
Confidence            764 445555553

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.27  E-value=3.9e-11  Score=80.55  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      +....+.+|+.++|.|.+ .+.|.+.+.|++++..+         ...+..|.|.+++.+|+|.|+|.+.+..+.. ...
T Consensus       104 ~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~  172 (184)
T 2ny1_B          104 NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFK  172 (184)
T ss_dssp             SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCE---------EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCcc---------ccCceEEEEecCCcCCCeEEEEEEEECCceE-EEE
Confidence            445678999999999998 66789999999987654         2345789999999999999999999866543 456


Q ss_pred             eEEEEeecc
Q psy573          111 AVLRVLVKP  119 (216)
Q Consensus       111 ~~l~v~~~p  119 (216)
                      +.|.|...|
T Consensus       173 ~~l~V~~~p  181 (184)
T 2ny1_B          173 IDIVVLAFQ  181 (184)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEecC
Confidence            677776554

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.27  E-value=4.5e-11  Score=70.75  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCE----EeccccCceEEEec-C----cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGH----PIDFENSKRLRLVD-G----TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .++..|+++.|.|.+....+.|+++|.|.+.    .+......+..... +    ..|+|.++..+|+|.|+|.+.+..+
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCC
Confidence            5789999999999985557899999999653    32111111111111 1    2699999999999999999999887


Q ss_pred             CcccceeEEEEee
Q psy573          105 TRESTDAVLRVLV  117 (216)
Q Consensus       105 ~~~~~~~~l~v~~  117 (216)
                      ...+....+.|..
T Consensus       104 ~ieSHs~ti~V~~  116 (122)
T 1xau_A          104 VINSHSVTIHVRE  116 (122)
T ss_dssp             EEECCCEEEEEC-
T ss_pred             ceeeeEEEEEEEe
Confidence            7666666666544

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.27  E-value=5.3e-11  Score=73.47  Aligned_cols=76  Identities=20%  Similarity=0.406  Sum_probs=54.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEec--------cccCceEEEecC------cEEEEcccCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID--------FENSKRLRLVDG------TNLAIQDSRKT   90 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~~--------~~~~~~~~~~~~------~~l~i~~~~~~   90 (216)
                      +...|..+.+.+|++++|.|.+ .+.+ +.+.||+..  ....        .....++....+      .+|.|.+++.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~-~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   81 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNF-TTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEE-SSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             eEECCCEEEEecCCcEEEEEEE-CCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChh
Confidence            4456777889999999999998 4433 689999853  1110        012334444332      27999999999


Q ss_pred             CCceEEEEEEcCCC
Q psy573           91 DDGRYQCVVKNVAG  104 (216)
Q Consensus        91 d~g~y~C~~~~~~~  104 (216)
                      |+|.|.|.+.+..+
T Consensus        82 DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           82 DSGTYFCAAEASSG   95 (113)
T ss_dssp             GCEEEEEEEECSSS
T ss_pred             hCEEEEEEEecCCC
Confidence            99999999998653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=3.9e-11  Score=89.18  Aligned_cols=82  Identities=22%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC-----CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-----DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      +....+.+|+.+.|.|.+.+ |.|.+.|++++..+..     .+... .+++|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~  330 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETLS  330 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEEE
Confidence            45568999999999999998 9999999997765422     13444 67789999999999999999999999999999


Q ss_pred             EEEEEEecc
Q psy573          200 ATLTVQSKY  208 (216)
Q Consensus       200 ~~l~v~~~p  208 (216)
                      +.|.|...+
T Consensus       331 ~~l~V~~~~  339 (361)
T 2xot_A          331 VELKVYNFT  339 (361)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEEeee
Confidence            999987543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.27  E-value=3.1e-12  Score=77.97  Aligned_cols=74  Identities=22%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .|.+...|.. .+.+|++|+|.|.+ ... ...+.||+++.....   .+... ..+..|.|.+++.+|+|.|+|.+.+.
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~-~~~-~~~~~w~k~g~~~~~---~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHL-PRM-AAWVQLWLNGTLRFD---KEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEEC-CSS-CEEEEEEETTEEEEE---EEECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEc-CCC-CcEEEEEECCcccee---eeccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            3556666655 68899999999998 333 467899999876521   11110 12347999999999999999999875


Q ss_pred             C
Q psy573          103 A  103 (216)
Q Consensus       103 ~  103 (216)
                      .
T Consensus        79 ~   79 (105)
T 2vsd_A           79 E   79 (105)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.27  E-value=4.2e-10  Score=77.03  Aligned_cols=158  Identities=20%  Similarity=0.368  Sum_probs=98.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+..  ...+.|++.  |+.+               .....+|+.+..+     ..|.+.+++
T Consensus         9 ~~lvkPG~Sl~lSC~~-SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~   87 (254)
T 4f9p_D            9 AEVVRPGTSVKVSCKA-SGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLT   87 (254)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-eCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCC
Confidence            3468899999999987 4432  235788873  2221               1123345554422     249999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeec---------------------ceEEeCCCceeEeCCCcEEEEEEeCCCCC
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVK---------------------PYIIRGPKDTTVSAGSIIVFECSVGGDAV  147 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~---------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  147 (216)
                      .+|.+.|+|.-... ....-....+.|..+                     ..+...|..+.+.+|+.+.|.|.+...-.
T Consensus        88 ~eDTAvYYCAr~~~-~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~  166 (254)
T 4f9p_D           88 SDDSAVYFCARSDY-GAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSIS  166 (254)
T ss_dssp             GGGCEEEECEESSS-CCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCT
T ss_pred             CCCCEEEEEEecCC-CCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCccc
Confidence            99999999975322 111222334444321                     12344566678899999999999865544


Q ss_pred             cEEEEeeC--CccCC-------------CCCeeeec---CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          148 LTVHWKRL--GSAMP-------------EDRMSVLP---SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       148 ~~i~W~~~--~~~~~-------------~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ..+.|++.  ++.+.             .+++....   +.+|.|..++.+|.+.|.|...+.
T Consensus       167 ~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~  229 (254)
T 4f9p_D          167 NNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS  229 (254)
T ss_dssp             TCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred             CCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCC
Confidence            45889863  22110             12333322   236999999999999999977654

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.27  E-value=1.5e-10  Score=74.18  Aligned_cols=85  Identities=20%  Similarity=0.346  Sum_probs=62.8

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCcc--C----------------CCCCeeeec------CCeEEEec
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSA--M----------------PEDRMSVLP------SRSLQLSD  176 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~--~----------------~~~~~~~~~------~~~l~i~~  176 (216)
                      .+....+..|+++.|.|.+.+.+   .+.+.|++++..  +                ...+.....      ...|.|.+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            34567889999999999986543   368999997631  0                012322222      24699999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          177 VRLEDGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      ++.+|+|.|.|.+.+..+.....+.|.|.+++
T Consensus        92 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~  123 (139)
T 1pko_A           92 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  123 (139)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             CCHHHCEEEEEEEEcCCCceEEEEEEEEecCc
Confidence            99999999999999998888888999998544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.27  E-value=2.1e-11  Score=82.81  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe---eeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM---SVLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .+|.+...+. ..+.+|+++.|.|.+.+.|. .+.|+|++..+.....   .......|.|.++..+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            4566665555 37889999999999987765 9999999987643211   11234679999999999999999999987


Q ss_pred             cc--eEEEEEEEEEe
Q psy573          194 GK--ISASATLTVQS  206 (216)
Q Consensus       194 ~~--~~~~~~l~v~~  206 (216)
                      |.  .+..+.|.|..
T Consensus        82 g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           82 GWSEPSDPLELVVTG   96 (196)
T ss_dssp             EECBCCCCEEEEEEC
T ss_pred             CcCCcCccEEEEecC
Confidence            64  24557777776

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.27  E-value=2.4e-11  Score=76.31  Aligned_cols=82  Identities=18%  Similarity=0.342  Sum_probs=61.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCC----cEEEEeeCCcc-------C---------------CCCCeeeecC------CeE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAV----LTVHWKRLGSA-------M---------------PEDRMSVLPS------RSL  172 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~----~~i~W~~~~~~-------~---------------~~~~~~~~~~------~~l  172 (216)
                      +....+.+|+++.|.|.+.+.+.    +.+.|++++..       +               ...+......      .+|
T Consensus        12 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL   91 (126)
T 1eaj_A           12 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   91 (126)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEE
Confidence            34567889999999999866543    45999986521       0               1123333222      579


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      .|.+++.+|+|.|.|.+.|..+.....+.|.|..
T Consensus        92 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           92 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            9999999999999999999988888888888864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.26  E-value=2.5e-11  Score=81.05  Aligned_cols=80  Identities=16%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             eeEeCCCcEEEEEEeCC--CCCcEEEEeeCCccC-----------CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          128 TTVSAGSIIVFECSVGG--DAVLTVHWKRLGSAM-----------PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~~~~-----------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      ..+.+|+.+.|.|...+  .+.+.|.|+|++..+           ...+.....++.|.|.+++.+|+|.|+|.+.|..|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            45778999999995433  556789999998532           23345555667799999999999999999999999


Q ss_pred             ce--EEEEEEEEEec
Q psy573          195 KI--SASATLTVQSK  207 (216)
Q Consensus       195 ~~--~~~~~l~v~~~  207 (216)
                      ..  ...+.|.|..+
T Consensus        86 ~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           86 TRILNKALDLRILEM  100 (176)
T ss_dssp             CEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEEEEeCC
Confidence            86  66778888764

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.26  E-value=1.7e-11  Score=77.02  Aligned_cols=85  Identities=26%  Similarity=0.392  Sum_probs=58.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCC----CeeEEeeCC-------EEe------------ccccCceEEEecC------c
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKNG-------HPI------------DFENSKRLRLVDG------T   80 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~----~~~~W~~~~-------~~~------------~~~~~~~~~~~~~------~   80 (216)
                      .+..+.+.+|++++|.|.+ .+.+.    +.+.|++.+       ..+            ......+.....+      .
T Consensus        11 ~~~~v~~~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   89 (126)
T 1eaj_A           11 PEEMIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA   89 (126)
T ss_dssp             SEEEEEEETTSCEEECCBE-ECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred             CCceEEEEeCCCEEEEEEE-ecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeE
Confidence            4456789999999999987 33332    459999864       222            1122345555443      6


Q ss_pred             EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|.
T Consensus        90 sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  124 (126)
T 1eaj_A           90 SINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  124 (126)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEECcCChHHCeEEEEEEEcCCccC-CcEEEEEEE
Confidence            79999999999999999999865532 445566554

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.25  E-value=3.1e-12  Score=73.37  Aligned_cols=60  Identities=25%  Similarity=0.585  Sum_probs=50.3

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecC-CCCCCeEEEEEEEc
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV-RLEDGGEYVCEAEN  191 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n  191 (216)
                      +....+..|+++.|.|.+.+.|.  |.|+|++..++..     .+++|.|.++ ..+|+|.|+|.+.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-----~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC-----CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-----CCCEEEECccCccCcCEEEEEEEcc
Confidence            45567778999999999998884  9999999887644     4568999996 78999999999865

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.25  E-value=8.6e-11  Score=73.30  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc-------ccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF-------ENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~-------~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+..       ....++...   ...+|.|.+++.+|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   82 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRA-SENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEecCCeEEEcCCCcEEEEEEe-CCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHH
Confidence            4456777889999999999998 55567789999953  2   1110       113344443   23479999999999


Q ss_pred             CceEEEEEEcCC-CCcccceeEEEEee
Q psy573           92 DGRYQCVVKNVA-GTRESTDAVLRVLV  117 (216)
Q Consensus        92 ~g~y~C~~~~~~-~~~~~~~~~l~v~~  117 (216)
                      +|.|.|.+.+.. .........|.|..
T Consensus        83 sG~Y~C~~~~~~~~~~fg~gt~L~V~~  109 (120)
T 1mqk_L           83 FGSYYCQHHYGTPPLTFGGGTKLEIKR  109 (120)
T ss_dssp             CEEEEEEECSSSSSCCBCCCEEEEEC-
T ss_pred             CEEEEEEEEeCCCceEECCCeEEEEec
Confidence            999999998754 22223344555543

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.24  E-value=9.8e-11  Score=71.65  Aligned_cols=75  Identities=19%  Similarity=0.328  Sum_probs=53.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEecc-------ccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPIDF-------ENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~~~-------~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.+ .+.+.+.+.||+..     ..+..       ....++....   ..+|.|.+++.+|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKA-SETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAED   82 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEE-SSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTC
T ss_pred             EEEeCCeEEEcCCCCEEEEeee-CCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence            4455677889999999999998 55556789999853     11210       1123444332   2379999999999


Q ss_pred             CceEEEEEEcC
Q psy573           92 DGRYQCVVKNV  102 (216)
Q Consensus        92 ~g~y~C~~~~~  102 (216)
                      +|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (108)
T 1qfw_M           83 FADYHCGQTYN   93 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             CEEEEEEEccC
Confidence            99999999865

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=83.38  Aligned_cols=128  Identities=18%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eecc-------ccCceEEEec-----CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PIDF-------ENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~~-------~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.....+.||+.  ++   .+..       ...+|+....     ...|+|.+++.
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~-s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~   81 (199)
T 3gsn_A            3 VEQSPQSLHVQEGDSTNFTCSF-PSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQP   81 (199)
T ss_dssp             CEEECSEEEEETTCCCEEEEEC-CCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCG
T ss_pred             EEECCCEEEEeCCCCEEEEEEE-cCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcc
Confidence            4556777889999999999998 4434458999984  21   1110       1123444321     23699999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCC
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMP  160 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~  160 (216)
                      +|+|.|.|.+.............|.|...     |.+......     ...+.|.|.+.+..+ .++.|.+++..+.
T Consensus        82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-----~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~  153 (199)
T 3gsn_A           82 EDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDS-----KSSDKSVCLFTDFDSQTNVSQSKDSDAYI  153 (199)
T ss_dssp             GGCEEEEEEEESSSCEEECSCEEEEEECCCSSCCCEEEECCCS-----SSSSSCCEEEETCCTTCCSSCSSCSSEEE
T ss_pred             cCCccEEEEEcccccccCCCCEEEEEecccCCCCCEEEEcccC-----CCCceEEEEeecccCCeEeEeccCCCeEe
Confidence            99999999996532212223346666542     333222211     123678999977643 4588999887654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.23  E-value=9.4e-11  Score=92.01  Aligned_cols=88  Identities=25%  Similarity=0.369  Sum_probs=74.3

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee---cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL---PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .|.+...+....+.+|+++.+.|.+.|.|.|.+.|++++..+.... ....   ...+|.|.++..+|+|.|+|.|.|..
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~  561 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY  561 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCC
Confidence            4666677778889999999999999999999999999999886543 3222   22469999999999999999999999


Q ss_pred             cceEEEEEEEEE
Q psy573          194 GKISASATLTVQ  205 (216)
Q Consensus       194 ~~~~~~~~l~v~  205 (216)
                      |+.+..+.|.|.
T Consensus       562 G~~~~~v~l~Vt  573 (573)
T 3uto_A          562 GTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEC
Confidence            999999988873

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.23  E-value=7.9e-11  Score=72.04  Aligned_cols=72  Identities=17%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCC-----eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-----TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      .|.+...|.. .+.+|++|+|.|.+ ...+..     .+.|++++..+..       ...+..|.|.+++.+|+|.|+|.
T Consensus         8 kP~l~~~p~~-~v~~G~~VtL~C~~-~~~~~~~~~~~~~~w~k~g~~l~~-------~~~~~~l~i~~v~~~dsG~Y~C~   78 (108)
T 4hwn_A            8 APILRAVPSA-EPQAGSPMTLSCQT-KLPLQRSAARLLFSFYKDGRIVQS-------RGLSSEFQIPTASEDHSGSYWCE   78 (108)
T ss_dssp             CCEEEEESCS-SCBTTCCEEEEEEC----------CCEEEEEETTEEEEE-------EESCCEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCC-cCCCCCcEEEEEcc-cCCCCCcCcceEEEEEECCcCccC-------CCcccEEEeCccCcccCeEEEEE
Confidence            3555555543 47899999999997 433332     4999999987731       23467899999999999999999


Q ss_pred             EEcCCC
Q psy573           99 VKNVAG  104 (216)
Q Consensus        99 ~~~~~~  104 (216)
                      +.+..+
T Consensus        79 ~~~~~~   84 (108)
T 4hwn_A           79 AATEDN   84 (108)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            997643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.23  E-value=5e-11  Score=83.36  Aligned_cols=81  Identities=27%  Similarity=0.460  Sum_probs=67.7

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-----eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....     ........|.|.++..+|+|.|+|.+.|..+.....+
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~  102 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY  102 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEE
Confidence            45688899999999999999999999999998765321     1222446799999999999999999999999888888


Q ss_pred             EEEEEe
Q psy573          201 TLTVQS  206 (216)
Q Consensus       201 ~l~v~~  206 (216)
                      .|.|..
T Consensus       103 ~l~V~~  108 (241)
T 3grw_A          103 TLDVLE  108 (241)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            888875

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.23  E-value=1.3e-10  Score=72.43  Aligned_cols=76  Identities=14%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc-------ccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF-------ENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~-------~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+..       ....++...   ...+|.|.+++.+
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~-~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKA-NQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE   83 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eeEecCCeEEEeCCCCEEEEEEe-CCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH
Confidence            45556777889999999999998 55567789999853  1   1110       113344432   1347999999999


Q ss_pred             CCceEEEEEEcC
Q psy573           91 DDGRYQCVVKNV  102 (216)
Q Consensus        91 d~g~y~C~~~~~  102 (216)
                      |+|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (119)
T 2e27_L           84 DAATYYCLQYDN   95 (119)
T ss_dssp             GCEEEEEEECGG
T ss_pred             HCEEEEEEEccC
Confidence            999999999864

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.23  E-value=3.9e-11  Score=82.82  Aligned_cols=127  Identities=17%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec---c-----ccCceEEEec-----CcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID---F-----ENSKRLRLVD-----GTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~---~-----~~~~~~~~~~-----~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|+.++|.|.+ .+. ...+.||+.  ++...   .     ...+|+....     ...|+|.+++.+
T Consensus         3 ~V~Q~p~~v~v~~G~sVtL~C~~-s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~   80 (229)
T 3mbe_C            3 PVEQNPPALSLYEGADSGLRCNF-STT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLE   80 (229)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEE-SSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCST
T ss_pred             cEEEcCCEEEEEcCCCEEEEEEE-eCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCccc
Confidence            34566777899999999999998 333 568999984  22111   0     1123444331     246999999999


Q ss_pred             CCceEEEEEEcCC--C-CcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccC
Q psy573           91 DDGRYQCVVKNVA--G-TRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAM  159 (216)
Q Consensus        91 d~g~y~C~~~~~~--~-~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~  159 (216)
                      |+|.|+|.+....  . ........|.|...     |.+...     ......+.|.|.+.+. |..++.|.+++..+
T Consensus        81 DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~~-----~~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~  153 (229)
T 3mbe_C           81 DSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQL-----KDPRSQDSTLCLFTDFDSQINVPKTMESGTF  153 (229)
T ss_dssp             TCBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEEE-----ECTTCTTCEEEEEESCCSSSCCCCCCSSSEE
T ss_pred             CCCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEEc-----cCCCCCEEEEEEccccCCceEeEeeccCceE
Confidence            9999999998532  1 11123345666542     222111     1112358899999776 54568999887654

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=99.23  E-value=7.7e-12  Score=85.91  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc--------ccCceEEEec-----CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF--------ENSKRLRLVD-----GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~--------~~~~~~~~~~-----~~~l~i~~~~   88 (216)
                      +...|..+.+.+|+.++|.|.+........+.||+..  .   .+..        ...+|+....     ...|.|.+++
T Consensus         6 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   85 (211)
T 2ak4_D            6 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   85 (211)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccc
Confidence            4455677889999999999987322222379999842  1   1110        1234444431     2379999999


Q ss_pred             CCCCceEEEEEEcCC---CCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccC
Q psy573           89 KTDDGRYQCVVKNVA---GTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAM  159 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~---~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~  159 (216)
                      .+|+|.|+|.+.+..   .........|.|...     |.+.....     ..+.+.|.|.+.+ .|.+.+.+.......
T Consensus        86 ~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~vtL~Cl~~gf~P~~~v~~~~~~~~~  160 (211)
T 2ak4_D           86 VVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQTNVSQSKDSDVY  160 (211)
T ss_dssp             GGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSCCCEEEEEBC-----CSSSCCEEEEEESCCTTCCCCCCSSSSCE
T ss_pred             cccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCCCCEEEEccC-----CCCceEEEEEeeeecCCcccccccccceE
Confidence            999999999998642   111122345666532     33322111     1247899999977 566655211110000


Q ss_pred             -CCCCeee--ecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          160 -PEDRMSV--LPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       160 -~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                       .......  ...+. ++....+.+++.|+|.+.+..
T Consensus       161 ~t~~~~~~~~~~~S~-t~~~~~w~~g~~~tC~V~~~~  196 (211)
T 2ak4_D          161 ITDKCVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN  196 (211)
T ss_dssp             ECCCEEEEEGGGTEE-EEEEEEEECSTTCCTTSTTTT
T ss_pred             ecCchhccccccccc-cccHHHccCCCceEEEEecCC
Confidence             0000000  11223 555566677789999887654

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.22  E-value=1.1e-10  Score=73.28  Aligned_cols=80  Identities=24%  Similarity=0.402  Sum_probs=58.3

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccCC------------------CCCeeeec------CCeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAMP------------------EDRMSVLP------SRSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~------------------~~~~~~~~------~~~l~i~~~~  178 (216)
                      .......|+++.|.|.....+.   ..+.|+|++....                  ..+.....      +.+|.|.+++
T Consensus        13 ~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~   92 (125)
T 4gos_A           13 VASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQ   92 (125)
T ss_dssp             ECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCC
T ss_pred             ceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCC
Confidence            3456778999999999864432   3699998653210                  01222211      2469999999


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          179 LEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      .+|+|.|+|.+.|..|.....+.|.|=
T Consensus        93 ~~D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           93 LTDAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hHHCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            999999999999999999888888774

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.22  E-value=1.2e-10  Score=71.44  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-EEec------------cccCceEEEe-cCcEEEEcccCCCCCceEEE
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-HPID------------FENSKRLRLV-DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-~~~~------------~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ..+.+.+|++++|.|.+..+.+.+.+.||+.. ..+.            ....+++.+. .+.+|.|.+++.+|+|.|.|
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C   90 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYM   90 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEEE
Confidence            45789999999999987334566799999942 2121            1112455554 45689999999999999999


Q ss_pred             EEEcCCCCcccceeEEEEe
Q psy573           98 VVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~l~v~  116 (216)
                      .+.+...  ....+.|.|.
T Consensus        91 ~v~~~~~--~~~~~~L~V~  107 (110)
T 2ptt_A           91 RVLRETE--NELKITLEVF  107 (110)
T ss_dssp             EEESSSB--CCEEEEEEEE
T ss_pred             EEEcCCC--cEEEEEEEEE
Confidence            9986542  2334556554

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.22  E-value=6.3e-11  Score=73.44  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=52.1

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE--------ec-------cccCceEEEe-----cCcEEEEcccCC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--------ID-------FENSKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~--------~~-------~~~~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      .+..+.+.+|++++|.|.+........+.||+....        +.       .....++...     ...+|.|.+++.
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   82 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVE   82 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCc
Confidence            345678999999999999733234567999997521        10       1123344432     124799999999


Q ss_pred             CCCceEEEEEEcCCC
Q psy573           90 TDDGRYQCVVKNVAG  104 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~  104 (216)
                      +|+|.|.|.+.+..+
T Consensus        83 ~DsG~Y~C~v~~~~~   97 (116)
T 2or8_A           83 SDSGLYCCRVEIPGW   97 (116)
T ss_dssp             GGCEEEEEEECCSST
T ss_pred             ccCEEEEEEEEcCCc
Confidence            999999999987543

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.22  E-value=2.4e-11  Score=82.65  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---eccc------cCceEEEec-----CcEEEEcccCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---IDFE------NSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~~~------~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.....+.||+..  +.   +...      ..+|+....     ...|+|.+++.
T Consensus         4 ~V~Q~p~~v~v~~G~sVtL~C~~-s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~   82 (208)
T 4ei6_A            4 KVQQSPESLSVPEGGMASLNCTS-SDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQP   82 (208)
T ss_dssp             CEEEECSEEEEETTCCEECEEEE-CCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCG
T ss_pred             eEEEeCCEEEEECCCCEEEEEEE-cCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcc
Confidence            45566778899999999999998 44344578999842  11   1100      233444431     24799999999


Q ss_pred             CCCceEEEEEEcCC----CCcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccC
Q psy573           90 TDDGRYQCVVKNVA----GTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAM  159 (216)
Q Consensus        90 ~d~g~y~C~~~~~~----~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~  159 (216)
                      +|+|.|+|.+....    .........|.|...     |.+....     .....+.|.|.+.+.++ .++.|.+++..+
T Consensus        83 ~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~l~-----~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~  157 (208)
T 4ei6_A           83 SDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLR-----DSKSSDKSVCLFTDFDSQTNVSQSKDSDVY  157 (208)
T ss_dssp             GGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSSCCCEEEEEE-----BSSCTTCEEEEEESCCTTCCCCCCSSTTCE
T ss_pred             cCCCcEEEEEecCCCccccccCCCCEEEEEeCcccCCCCEEEEcc-----cCCCCceEEEEeeccCCceEeeecccCcEE
Confidence            99999999987431    112233346666542     2221110     11123679999977644 468999988765


Q ss_pred             CCC
Q psy573          160 PED  162 (216)
Q Consensus       160 ~~~  162 (216)
                      ..+
T Consensus       158 ~~~  160 (208)
T 4ei6_A          158 ITD  160 (208)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            433

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.21  E-value=4.7e-11  Score=82.92  Aligned_cols=86  Identities=22%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCC--------------CCCee----------eecCCeEEEecCC
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMP--------------EDRMS----------VLPSRSLQLSDVR  178 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~--------------~~~~~----------~~~~~~l~i~~~~  178 (216)
                      .+....+.+|+.+.|.|.+.+.+. +.+.|++++....              ..+..          ....+.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            345668899999999999988885 8999998765432              11222          3344669999999


Q ss_pred             CCCCeEEEEEEEcCC-cceEEEEEEEEEecce
Q psy573          179 LEDGGEYVCEAENAV-GKISASATLTVQSKYL  209 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~-~~~~~~~~l~v~~~p~  209 (216)
                      .+|+|.|.|.+.|.. +.....+.|.|..+|.
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  117 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPE  117 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCC
Confidence            999999999999987 7788888999987754

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.21  E-value=3.7e-11  Score=73.51  Aligned_cols=86  Identities=21%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-----EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-----TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ..|.+...+. ..+.+|+.++|.|.+.+.+..     .+.|+|++..+..    ......|.|.+++.+|+|.|+|.+.+
T Consensus         7 ~kP~l~~~p~-~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~----~~~~~~l~i~~v~~~dsG~Y~C~~~~   81 (108)
T 4hwn_A            7 PAPILRAVPS-AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS----RGLSSEFQIPTASEDHSGSYWCEAAT   81 (108)
T ss_dssp             CCCEEEEESC-SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE----EESCCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEecCC-CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC----CCcccEEEeCccCcccCeEEEEEEEe
Confidence            3455555444 357889999999998755443     4999999976541    23467899999999999999999998


Q ss_pred             CCc---ceEEEEEEEEEec
Q psy573          192 AVG---KISASATLTVQSK  207 (216)
Q Consensus       192 ~~~---~~~~~~~l~v~~~  207 (216)
                      ..+   ..+..+.|.|.+.
T Consensus        82 ~~~~~~~~S~~l~L~V~g~  100 (108)
T 4hwn_A           82 EDNQVWKQSPQLEIRVQGA  100 (108)
T ss_dssp             TTSSSEEECCCEEECCBC-
T ss_pred             CCCceeccCCCEEEEEEec
Confidence            765   2444566666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.21  E-value=6.7e-11  Score=90.23  Aligned_cols=93  Identities=20%  Similarity=0.360  Sum_probs=71.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe-cc-ccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~-~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+...+....+.+|++++|.|.+  +.|.+.+.|++++..+ .. ....++....+++|.|.+++.+|+|.|+|.+.|
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~--~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  418 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSN  418 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE--SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEEC
T ss_pred             CCcccccccceeeccCceEEEEeec--CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEc
Confidence            5677777888999999999999998  4588899999954433 22 123456666778899999999999999999999


Q ss_pred             CCCCcccceeEEEEeecc
Q psy573          102 VAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~~~p  119 (216)
                      ..|.. ..++.+.|..+|
T Consensus       419 ~~G~~-~~~~~~~v~~~~  435 (440)
T 3zyj_A          419 SVGNT-TASATLNVTGTH  435 (440)
T ss_dssp             SSCEE-EEEEEEEEC---
T ss_pred             CCCcE-EEEEEEEEeccc
Confidence            98875 456677776654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.21  E-value=5.8e-11  Score=81.32  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=67.3

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC----CcEEEEeeCC----------------ccCC------CCCeeee------cCCeE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRLG----------------SAMP------EDRMSVL------PSRSL  172 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~----------------~~~~------~~~~~~~------~~~~l  172 (216)
                      +....+.+|+.+.|.|.+.+.+    .+.+.|++++                ....      ..+....      ....|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3455788999999999998776    4689999843                2222      2233332      23679


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeee
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      .|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.+..
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~  126 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR  126 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCE
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCce
Confidence            9999999999999999999999888899999998776543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.21  E-value=5.4e-11  Score=84.16  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec----------cccCceEEEec---CcEEEEcccC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      ++.+...|....+.+|++++|.|.+ .+.+.+.+.||+.  +....          .....++....   ..+|.|.+++
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  216 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRA-SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLE  216 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCC
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEE-ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCC
Confidence            5677777878899999999999998 6667779999984  22111          01123333221   2369999999


Q ss_pred             CCCCceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .+|+|.|+|.+.+...........|.|..++
T Consensus       217 ~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          217 SEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             hhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            9999999999988654444555677776544

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.20  E-value=1.1e-10  Score=71.24  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eecc-------ccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF-------ENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~~-------~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.+ .+.+.+.+.||+..  .   .+..       ....++....   ..+|.|.+++.+|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMT-STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEeCCCeEEecCCCCEEEEEEE-CCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHH
Confidence            4455677889999999999998 55567789999853  1   1110       1133444332   2379999999999


Q ss_pred             CceEEEEEEcC
Q psy573           92 DGRYQCVVKNV  102 (216)
Q Consensus        92 ~g~y~C~~~~~  102 (216)
                      +|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (107)
T 1i8k_A           83 VGDYYCLQSFN   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999864

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.20  E-value=1.2e-10  Score=74.55  Aligned_cols=85  Identities=25%  Similarity=0.353  Sum_probs=58.4

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCE--Eec-------------cccCceEEEec------CcEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGH--PID-------------FENSKRLRLVD------GTNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~--~~~-------------~~~~~~~~~~~------~~~l~i~~   86 (216)
                      +..+.+.+|++++|.|.+ ...+   .+.+.||+++.  .+.             ....+++.+..      +.+|.|.+
T Consensus        13 ~~~v~~~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           13 GHPIRALVGDEAELPCRI-SPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             SSCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCEEEEeCCCEEEeeEc-cCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            345789999999999987 3322   36899999764  110             01134555443      24799999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      ++.+|+|.|+|.+.+..+. ....+.|.|..
T Consensus        92 v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~~  121 (139)
T 1pko_A           92 VRFSDEGGYTCFFRDHSYQ-EEAAVELKVED  121 (139)
T ss_dssp             CCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             CCHHHCEEEEEEEEcCCCc-eEEEEEEEEec
Confidence            9999999999999987653 24456777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=1e-12  Score=97.22  Aligned_cols=115  Identities=20%  Similarity=0.265  Sum_probs=87.0

Q ss_pred             CCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeeec
Q psy573           91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLP  168 (216)
Q Consensus        91 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~  168 (216)
                      +.|.|+|...+...     .+.+.+-.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  ......
T Consensus       136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  210 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP  210 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSS
T ss_pred             cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecc
Confidence            45788998655111     12222334677777777888999999999999999999999999988764321  111224


Q ss_pred             CCeEEEecCCCCCCe-EEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          169 SRSLQLSDVRLEDGG-EYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       169 ~~~l~i~~~~~~d~g-~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      .+.|.|.++..+|+| .|+|.+.|..|.....+.|.|..+|.+
T Consensus       211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i  253 (347)
T 2ifg_A          211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV  253 (347)
T ss_dssp             EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE
T ss_pred             cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee
Confidence            467999999999999 999999999999888888888877764

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.20  E-value=1e-10  Score=71.93  Aligned_cols=76  Identities=14%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Eecc-------ccCceEEEec---CcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PIDF-------ENSKRLRLVD---GTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~~~-------~~~~~~~~~~---~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.+ .+.+.+.+.||+...     .+..       ....++....   ..+|+|.+++.+
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   84 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKA-SQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSE   84 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEe-CCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHH
Confidence            45556777889999999999998 455567899998531     1210       1123444331   247999999999


Q ss_pred             CCceEEEEEEcC
Q psy573           91 DDGRYQCVVKNV  102 (216)
Q Consensus        91 d~g~y~C~~~~~  102 (216)
                      |+|.|.|.+.+.
T Consensus        85 DsG~Y~C~~~~~   96 (111)
T 1i3g_L           85 DLADYFCQQYSS   96 (111)
T ss_dssp             GCSEEEEEECSS
T ss_pred             HCEEEEEEEecC
Confidence            999999999865

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.20  E-value=6.6e-11  Score=83.07  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             hhhceeeEEee--ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCC
Q psy573           13 EEKKKLKIEML--REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT   90 (216)
Q Consensus        13 ~~~~~l~v~~~--~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (216)
                      ++.+.|.|...  +|.+...+ ...+.+|++++|.|.+ .+ +.+.+.|+|++..+..   .......+..|.|.+++.+
T Consensus        89 S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~-~~-~~~~~~w~k~g~~~~~---~~~~~~~~~~l~I~~v~~~  162 (242)
T 1p6f_A           89 SNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHV---QRGYGKVQAEFPLGPVTTA  162 (242)
T ss_dssp             CCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEEC-TT-SCSEEEEEECSSSCEE---EEEECSSEEEEEEEECCGG
T ss_pred             CcceEEEeecccCCCceEccC-CCccCCCCcEEEEEec-CC-CCCEEEEEECCCccCc---cccCCCceEEEEeCCCccc
Confidence            45667777643  35555455 4568999999999998 33 4469999999876532   1111223467999999999


Q ss_pred             CCceEEEEEEcCC--CCcccceeEEEEeec
Q psy573           91 DDGRYQCVVKNVA--GTRESTDAVLRVLVK  118 (216)
Q Consensus        91 d~g~y~C~~~~~~--~~~~~~~~~l~v~~~  118 (216)
                      |+|.|+|.+.+..  ....+..+.|.|...
T Consensus       163 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          163 HRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             GCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             cCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            9999999998754  222355667777653

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.20  E-value=9.5e-11  Score=80.01  Aligned_cols=118  Identities=20%  Similarity=0.256  Sum_probs=75.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-c------ccCceEEEec-----CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-F------ENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-~------~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.....+.||+..  .   .+. .      ...+|+....     ..+|.|.+++.
T Consensus         3 v~q~p~~v~v~~G~~v~L~C~~-s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   81 (203)
T 2bnu_A            3 VTQIPAALSVPEGENLVLNCSF-TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (203)
T ss_dssp             EEEECSEEEEETTCCEEEEEEE-SCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cEEcCCEEEEeCCCCEEEEEEE-CCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCc
Confidence            3455777899999999999997 44444589999843  1   111 0      1134444431     24799999999


Q ss_pred             CCCceEEEEEEcCC---C-CcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEE
Q psy573           90 TDDGRYQCVVKNVA---G-TRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTV  150 (216)
Q Consensus        90 ~d~g~y~C~~~~~~---~-~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i  150 (216)
                      +|+|.|+|.+.+..   . ........|.|...     |.+.....     ..+.+.|.|.+.+ +|.+.+
T Consensus        82 ~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A           82 GDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR-----SKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             GGCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC-----SSSSSCEEEEEESCCTTCCC
T ss_pred             ccCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC-----CCCCcEEEEEccccccCccc
Confidence            99999999998642   1 11112346666532     33332111     1247899999987 688877

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.19  E-value=2.1e-10  Score=73.91  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEecc-------ccCceEEEec---CcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPIDF-------ENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~~~-------~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      +.+...|..+.+.+|++++|.|.+ .+.+.+.+.||+..     ..+..       ....++....   ..+|+|.+++.
T Consensus        17 ~~v~q~p~~v~v~~G~sVtL~C~~-s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~   95 (146)
T 2yc1_B           17 IVLTQSPATLSVSPGERATLSCRA-SQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEP   95 (146)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceEEEeCCEEEEecCCCEEEEEEE-CCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCH
Confidence            345556777889999999999997 45556789999953     12211       1123444331   24799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      +|+|.|.|.+.+...........|.|..++
T Consensus        96 ~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~  125 (146)
T 2yc1_B           96 EDFAIYYCQQYRYSPRTFGQGTKVEIKRAA  125 (146)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             HHCEEEEEEEecCCCCeECCCEEEEEeCCc
Confidence            999999999987533222334566665544

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.19  E-value=1e-10  Score=71.62  Aligned_cols=82  Identities=22%  Similarity=0.375  Sum_probs=53.8

Q ss_pred             ceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEE-------e--------ccccCceEEEec-----CcEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHP-------I--------DFENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~-------~--------~~~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      .+.+.+|++++|.|.+ ...+   ...+.|++....       +        ......++....     +.+|.|.+++.
T Consensus         3 ~v~~~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   81 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSY-TLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTL   81 (109)
T ss_dssp             EEEECTTSCEEECCBC-CCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCG
T ss_pred             CEEEEcCCCEEEEEEe-ECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCC
Confidence            4678899999999997 3333   235899995421       1        011233444432     25799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +|+|.|.|.+.+..+.. ...+.|.|.
T Consensus        82 ~D~G~Y~C~v~~~~~~~-~~~~~l~V~  107 (109)
T 2oyp_A           82 DDHGTYCCRIQFPGLMN-DKKLELKLD  107 (109)
T ss_dssp             GGCEEEEEEECCSSTTC-CEEEEEEEE
T ss_pred             hhCeEEEEEEEcCCccc-ceEEEEEEE
Confidence            99999999999865432 334445443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=79.29  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=64.8

Q ss_pred             CCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCC----C---------------CCeeeecCCeEEEecCCCCCCeE
Q psy573          125 PKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMP----E---------------DRMSVLPSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~----~---------------~~~~~~~~~~l~i~~~~~~d~g~  184 (216)
                      +....+.+|+++.|.|.+.+ .+.+.+.|++++..+.    .               .+.....+..|.|.+++.+|+|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            45567889999999999865 4557899999865321    0               12233346789999999999999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEecc
Q psy573          185 YVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       185 y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      |.|.+.|..+.....+.|.|..++
T Consensus        85 Y~C~~~~~~~~~~~~~~L~V~~~~  108 (193)
T 2if7_A           85 YRAQISTKTSAKLSSYTLRILRQL  108 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCC
T ss_pred             EEEEEEecCCCeEEEEEEEEEccC
Confidence            999999998887778888887654

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.19  E-value=3.6e-11  Score=82.72  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec-c------ccC-ceEEEec-----CcEEEEccc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-F------ENS-KRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~-~------~~~-~~~~~~~-----~~~l~i~~~   87 (216)
                      .+...|..+.+.+|+.++|.|.+ .+.....+.||+.  ++   .+. .      ... +|+....     ...|+|.++
T Consensus        11 ~V~Qsp~~v~v~~G~sVtL~C~~-s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~l   89 (226)
T 3tjh_C           11 SVTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   89 (226)
T ss_dssp             EEECSCSEEEEETTSCEEECCEE-EESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSC
T ss_pred             EEEEeCCEEEEEcCCCEEEEEEE-ecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecC
Confidence            45556777889999999999987 3333458999984  22   111 0      112 5555431     236999999


Q ss_pred             CCCCCceEEEEEEcCC--C-CcccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCcc
Q psy573           88 RKTDDGRYQCVVKNVA--G-TRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSA  158 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~~--~-~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~  158 (216)
                      +.+|+|.|+|.+....  . ........|.|...     |.+....     .....+.|.|.+.+. |..++.|.+++..
T Consensus        90 q~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~~P~V~~~~-----~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~  164 (226)
T 3tjh_C           90 HWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQLR-----DSKSSDKSVCLFTDFDSQTNVSQSKDSDV  164 (226)
T ss_dssp             CGGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSCCCEEEEEE-----ECC---CEEEEEESCCTTCCCCCCSCTTE
T ss_pred             CcccCCCEEEEEEecCCccccccCCCeEEEEeCCCCCCCCEEEEcc-----cCCCCeEEEEEcccccCCcEEEeeccCce
Confidence            9999999999987531  1 11122345666542     2222111     111347899999765 5456899999876


Q ss_pred             CCCC
Q psy573          159 MPED  162 (216)
Q Consensus       159 ~~~~  162 (216)
                      +...
T Consensus       165 ~~~~  168 (226)
T 3tjh_C          165 YITD  168 (226)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            6443

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.19  E-value=9e-11  Score=74.53  Aligned_cols=88  Identities=20%  Similarity=0.332  Sum_probs=59.6

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC-----CCCCeeeecC---CeEEEecCCCCCCeEEEEEEE
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM-----PEDRMSVLPS---RSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~-----~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +...+....+.+|+.+.|.|.+.+.  +.+.|+++.  ..+     ...++.....   ..|.|.+++.+|+|.|.|.+.
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~   97 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQK   97 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEES
T ss_pred             eEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEE
Confidence            4445667789999999999999876  889999873  221     1233333222   359999999999999999999


Q ss_pred             cCCcc----eEEEEEEEEEeccee
Q psy573          191 NAVGK----ISASATLTVQSKYLK  210 (216)
Q Consensus       191 n~~~~----~~~~~~l~v~~~p~~  210 (216)
                      |..|.    ......|.|.+.|.+
T Consensus        98 n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           98 CDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             SCC-------CCCEEEEEC-----
T ss_pred             eCCCCcceeECCCEEEEEEecccc
Confidence            98752    234566777775543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.19  E-value=1.5e-10  Score=79.49  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...+ ...+.+|+.+.|.|.+.+.+.+.+.|++..  ...             ...++...   ....|.|.+++.+|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (213)
T 3mj8_L            5 TQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEA   83 (213)
T ss_dssp             BCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCE
Confidence            3444 678899999999999998999999999832  111             11222211   2346999999999999


Q ss_pred             EEEEEEEcCCc---ceEEEEEEEEE
Q psy573          184 EYVCEAENAVG---KISASATLTVQ  205 (216)
Q Consensus       184 ~y~C~~~n~~~---~~~~~~~l~v~  205 (216)
                      .|.|.+.|..+   .....+.|.|.
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           84 DYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             EEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             EEEEEeccCCcceeEEcCceEEEEe
Confidence            99999999887   34556677777

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.19  E-value=7.9e-11  Score=72.33  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-----e-cc-----ccCceEEEec-----CcEEEEcccCCCCCce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----I-DF-----ENSKRLRLVD-----GTNLAIQDSRKTDDGR   94 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-----~-~~-----~~~~~~~~~~-----~~~l~i~~~~~~d~g~   94 (216)
                      |..+.+.+|++++|.|.+........+.||+....     + ..     ...+++....     ..+|+|.+++.+|+|.
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~   82 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGT   82 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEE
Confidence            45678999999999999833333468999985421     1 00     0223444432     2479999999999999


Q ss_pred             EEEEEEcCC-CCcccceeEEEEeecc
Q psy573           95 YQCVVKNVA-GTRESTDAVLRVLVKP  119 (216)
Q Consensus        95 y~C~~~~~~-~~~~~~~~~l~v~~~p  119 (216)
                      |.|.+.+.. +........+.|...|
T Consensus        83 Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           83 YWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             EEEEEecCccCccCCccEEEEEEEec
Confidence            999999864 3112233455554433

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=99.18  E-value=1.5e-12  Score=89.23  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---ec-c------ccCceEEEe-----cCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID-F------ENSKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~-~------~~~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.. ..+.||+..  ..   +. .      ...+|+...     ....|.|.+++.
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~-s~~~-~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   81 (207)
T 1ymm_D            4 GEEDPQALSIQEGENATMNCSY-KTSI-NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA   81 (207)
T ss_dssp             -----CCCCCSSCCCCCBCCBC-SSCE-EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS
T ss_pred             eEECCCEEEEeCCCCEEEEEEe-cCCC-ceEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCc
Confidence            3344667788999999999998 4434 789999853  11   10 0      122333332     124799999999


Q ss_pred             CCCceEEEEEEcCC--CC-cccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccC-
Q psy573           90 TDDGRYQCVVKNVA--GT-RESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAM-  159 (216)
Q Consensus        90 ~d~g~y~C~~~~~~--~~-~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~-  159 (216)
                      +|+|.|+|.+.+..  .. .......|.|...     |.+....     ..++.+.|.|.+.+ .|.+.+....+.... 
T Consensus        82 ~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~-----~~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~  156 (207)
T 1ymm_D           82 ADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQLR-----DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI  156 (207)
T ss_dssp             TTCSCCEEEEEETTSCSCEEECC---------------------------------------------------------
T ss_pred             ccCceEEEEEEcCCCcceeeECCCEEEEEECCCCCCCCEEEecC-----CCCCCeEEEEEccccccCCccccccccceee
Confidence            99999999998742  11 1112234555432     2222111     11247899999977 577766322111100 


Q ss_pred             CCCCeee--ecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          160 PEDRMSV--LPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       160 ~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .......  ...+. .+....+.++++|+|.+.+..
T Consensus       157 t~~~~~~~~~~~S~-t~~~~~w~~~~~~tC~V~~~~  191 (207)
T 1ymm_D          157 TDKTVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN  191 (207)
T ss_dssp             ------------------------------------
T ss_pred             cCCceecccccccc-ccchhhcCCCCceEEEEEeCC
Confidence            0000000  11222 445666677889999997754

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.18  E-value=4.1e-09  Score=76.37  Aligned_cols=153  Identities=17%  Similarity=0.219  Sum_probs=93.7

Q ss_pred             EecccceEEecCCcEEEEeeCCC------CCCCCeeEEeeCCEEeccccCceEEEec--CcEEEEcccCCCCCceEEEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPR------GHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~------~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .+.|.+..+..|++++|.|.+..      +.|.+.+.|++++..+...   ++...+  .+.|.|.++...| |.|.|.+
T Consensus         8 ~i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~---~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a   83 (303)
T 1i1r_A            8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIASLN-IQLTCNI   83 (303)
T ss_dssp             EEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG---GCEEEETTEEEEEECSCCCSE-EEEEEEE
T ss_pred             eEccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh---heeeeCCcEEEEEEcCcCCCc-eEEEEec
Confidence            45677788999999999999831      3477899999999987432   222222  2479999999885 9999999


Q ss_pred             EcCCCCcc-cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-----------
Q psy573          100 KNVAGTRE-STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----------  167 (216)
Q Consensus       100 ~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-----------  167 (216)
                      .+...... .....+.+..+|             +....|.|...+.....+.|......-....+.+.           
T Consensus        84 ~~~g~~~~~~~~~~l~v~~~P-------------~~P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~~  150 (303)
T 1i1r_A           84 LTFGQLEQNVYGITIISGLPP-------------EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADC  150 (303)
T ss_dssp             EETTTEEEEEEEEEEEEECCC-------------CCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCE
T ss_pred             ccCCCcceEEEEEEEeccCCC-------------CCCeeeEEEECCCCcEEEEccCCCCCCCCcCEEEEEEecCCCCccC
Confidence            87422111 111222222222             33455677765555567777643211110111110           


Q ss_pred             -----cCCeEEEecC-CCCCCeEEEEEEEcCCcceE
Q psy573          168 -----PSRSLQLSDV-RLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       168 -----~~~~l~i~~~-~~~d~g~y~C~~~n~~~~~~  197 (216)
                           ......+.++ .....-.|++.|.|..|...
T Consensus       151 ~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~  186 (303)
T 1i1r_A          151 KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT  186 (303)
T ss_dssp             ECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEE
T ss_pred             CCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcc
Confidence                 1134666776 56666678899999988753

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.18  E-value=1.2e-10  Score=68.99  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             ceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCc----cCCCCCe---eee-cC----CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          127 DTTVSAGSIIVFECSVGG-DAVLTVHWKRLGS----AMPEDRM---SVL-PS----RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~----~~~~~~~---~~~-~~----~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ...+..|+.+.|.|.+.+ .+.|+++|.|.+.    .+.....   .-. .+    ..|.+.++..+|+|.|+|.|.+..
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~  102 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS  102 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCC
Confidence            347788999999999955 6899999999663    2221111   000 11    368999999999999999999988


Q ss_pred             cc-eEEEEEEEEEec
Q psy573          194 GK-ISASATLTVQSK  207 (216)
Q Consensus       194 ~~-~~~~~~l~v~~~  207 (216)
                      |. .+.+..|.|.+.
T Consensus       103 g~ieSHs~ti~V~~~  117 (122)
T 1xau_A          103 QVINSHSVTIHVRER  117 (122)
T ss_dssp             EEEECCCEEEEEC--
T ss_pred             CceeeeEEEEEEEee
Confidence            87 444556666653

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.18  E-value=1e-10  Score=73.38  Aligned_cols=90  Identities=20%  Similarity=0.340  Sum_probs=58.1

Q ss_pred             cccceEEecCCcEEEEeeCCCC---CCCCeeEEeeCCE----E--e-c-----------cccCceEEEe-----cCcEEE
Q psy573           30 QPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGH----P--I-D-----------FENSKRLRLV-----DGTNLA   83 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~~~----~--~-~-----------~~~~~~~~~~-----~~~~l~   83 (216)
                      .|..+.+.+|++++|.|.+...   .+...+.|++.+.    .  + .           ....+++.+.     .+.+|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            4556789999999999986222   2467899998532    0  1 0           1113455543     235899


Q ss_pred             EcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecc
Q psy573           84 IQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKP  119 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p  119 (216)
                      |.+++.+|+|.|.|.+.+..+.. ....+.|.|..+|
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             EccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            99999999999999999765542 2445677776654

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.18  E-value=1.2e-10  Score=73.24  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCC----CCeeEEeeCC--E---Eec-------cccCceEEEe---cCcEEEEcc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG--H---PID-------FENSKRLRLV---DGTNLAIQD   86 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~----~~~~~W~~~~--~---~~~-------~~~~~~~~~~---~~~~l~i~~   86 (216)
                      .+...|..+.+.+|++++|.|.+ ...+    ...+.||+..  .   .+.       .....++...   ...+|+|.+
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~   81 (126)
T 4ffy_L            3 VLTQSPASLAVSLGQRATISCRA-SESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDS   81 (126)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             cEEeCCCeEEEeCCCCEEEEEec-CCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECC
Confidence            45556777899999999999998 4444    5679999842  1   111       0112344332   234799999


Q ss_pred             cCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      ++.+|+|.|.|.+.+...........|.|..
T Consensus        82 v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           82 VETDDAATYYCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CCHHHCEEEEEEEecCCCcEECCCEEEEEec
Confidence            9999999999999875433233345566654

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=99.18  E-value=9.4e-11  Score=79.44  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-------cccCceEEEec-----CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.+ .+.....+.||+..  .   .+.       ....+++....     ...|+|.+++.
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~-s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   82 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTY-QSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL   82 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEE-ECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred             cEecCCEEEEecCCCEEEEEEe-CCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCc
Confidence            4455778899999999999987 44445679999853  2   111       01234555431     24799999999


Q ss_pred             CCCceEEEEEEcC---CCC-cccceeEEEEeec-----ceEEeCCCceeEeCCCcEEEEEEeCC-CCCcEE
Q psy573           90 TDDGRYQCVVKNV---AGT-RESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFECSVGG-DAVLTV  150 (216)
Q Consensus        90 ~d~g~y~C~~~~~---~~~-~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i  150 (216)
                      +|+|.|.|.+.+.   ... .......|.|...     |.+....     ...+.+.|.|.+.+ .|.+.+
T Consensus        83 ~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~-----~~~~~~tL~Cl~~gf~P~~~V  148 (194)
T 1lp9_E           83 SDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLK-----DPRSQDSTLCLFTDFDSQINV  148 (194)
T ss_dssp             GGCEEEEEEEEECSSSSCEEEECCCEEEEEECCCSSCCCEEEEEE-----CTTSSSCEEEEEESCCTTSCC
T ss_pred             ccCeeEEEEEecccCCcceeeeccCceEEecCcCCCCCCeeEecC-----CCCCCcEEEEEeecccCCccc
Confidence            9999999999863   111 1112345666532     2222111     11236899999987 577766

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.18  E-value=1.2e-10  Score=81.81  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee--CCEEec----------cccCceEEEec---CcEEEEcccCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPID----------FENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~--~~~~~~----------~~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      +.+...+....+.+|+.++|.|.+ .+.+.+.+.||+  ++..+.          .....++....   ..+|.|.+++.
T Consensus       136 ~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  214 (247)
T 2ghw_B          136 TTLTQSPATLSLSPGERATLSCRA-SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP  214 (247)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG
T ss_pred             eEEEccCCEEEecCCCcEEEEEEe-CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH
Confidence            345556667789999999999998 677778999999  444321          01123343332   23699999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      +|+|.|+|.+.+...........|.|.
T Consensus       215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          215 EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999999999987544333444555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-21
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-20
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-16
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-20
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-19
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-19
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	8e-13
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-18
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-17
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-17
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-16
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-15
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-16
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-16
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-14
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-14
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-14
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-14
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-13
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-14
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-13
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-14
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	9e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-13
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-13
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-13
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-12
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-11
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-12
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	8e-12
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-12
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	5e-12
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-11
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-11
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-11
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-11
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-10
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-10
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-10
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-10
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	1e-07
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-10
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	4e-10
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	0.001
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-09
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-09
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-09
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-09
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	5e-09
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-09
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-07
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	6e-09
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	3e-06
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	8e-09
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	7e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-08
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-08
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-08
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	1e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	2e-08
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	3e-05
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	3e-08
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	3e-08
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	3e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	6e-08
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.001
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	1e-07
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	6e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-07
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	3e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-07
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-07
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	7e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-06
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-06
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	1e-05
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	8e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	2e-05
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	2e-05
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.001
d1vcaa1	109	b.1.1.3 (A:91-199) Vascular cell adhesion molecule	3e-04
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.001
d1nkra1	96	b.1.1.4 (A:6-101) Killer cell inhibitory receptor	0.002
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.004

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.6 bits (203), Expect = 2e-21
 Identities = 30/89 (33%), Positives = 40/89 (44%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           +P  +    DT    GS + + C   G     V W R G  +       +    L+ S +
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 60

Query: 178 RLEDGGEYVCEAENAVGKISASATLTVQS 206
            LED G Y C AEN  G + ASA LTVQ+
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.0 bits (134), Expect = 2e-11
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
           ++           G      C    G P P + W ++G P+    S+    V G  L   
Sbjct: 3   DWLDVITDTEADIGSDLRWSC-VASGKPRPAVRWLRDGQPL---ASQNRIEVSGGELRFS 58

Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
                D G YQCV +N  GT  ++ A L V
Sbjct: 59  KLVLEDSGMYQCVAENKHGTVYAS-AELTV 87

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 4e-20
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQL 174
           P II+ P+D  V AG  +     V G   +T  W +    + E     +        L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
              R E  G Y    EN +G   A   LTV  K
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 1e-16
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGTNLAI 84
           +    P+ Q+V AG++  L      G    T  W K    I      ++    +G+ L I
Sbjct: 2   QIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
             +R+   G Y  +V+N  G+R++    L V+ KP
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKP 94

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 79.2 bits (194), Expect = 5e-20
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMS 165
           A  +  VKPY  +   D  V  GS   F+C V G     V W +  + + E         
Sbjct: 1   AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
              + SL +S+V  +D  +Y C+A N++G+ + +A L V++
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 52.6 bits (125), Expect = 6e-10
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 13  EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK 72
           EEK  +K       F        V  G  A  +C    G+P+P ++W K+ +P+      
Sbjct: 2   EEKPHVK-----PYFTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHF 55

Query: 73  RLRLVDGTNLAI--QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           ++   +  N ++   +    DD +Y C   N  G    T A L V
Sbjct: 56  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT-AELLV 99

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 76.3 bits (187), Expect = 5e-19
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 119 PYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           P   + P+    V  G  +   C V G     V W      +   R +V     L +  V
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-TDSGLVIKGV 61

Query: 178 RLEDGGEYVCEAENAVGKISASATLTV 204
           +  D G Y C A N  G       + V
Sbjct: 62  KNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.2 bits (145), Expect = 7e-13
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 26  EFRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 84
           ++  +P+    V  G    + C    G P P +VW  N  P+          V  + L I
Sbjct: 4   KYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAKPLSGGR----ATVTDSGLVI 58

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           +  +  D G Y C   N  G +     +++V
Sbjct: 59  KGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 88

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.1 bits (186), Expect = 7e-19
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MSVLPSRSLQ 173
           +P  I  P  T V  G    F C V   +   V W +    + +              L 
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           ++ V+ +D GEY   A+N+ G       L V   
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (145), Expect = 8e-13
 Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAI 84
            F V+P    V  G +A   C        P + W K+   +        R       L I
Sbjct: 3   RFIVKPYGTEVGEGQSANFYC-RVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
              +  D G Y    KN  GT+E     L V    
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEI-VFLNVTRHS 95

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.9 bits (183), Expect = 2e-18
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 119 PYII-RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           P I  + P DT    G ++  EC   G+ V  + W++L  +     +S      L + +V
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS--SEPLLHIQNV 62

Query: 178 RLEDGGEYVCEAENAVGKISASATLTVQS 206
             ED G Y CEAEN  G+ +    + + +
Sbjct: 63  DFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 1e-09
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
           P       G    LEC    G+P P + W+K       +            L IQ+    
Sbjct: 12  PADTYALTGQMVTLEC-FAFGNPVPQIKWRKLDGSQTSKWLSSEP-----LLHIQNVDFE 65

Query: 91  DDGRYQCVVKNVAGTRESTDAVLRV 115
           D+G Y+C  +N+ G        + +
Sbjct: 66  DEGTYECEAENIKGRDTYQ-GRIII 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-17
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS----VLPSRSLQLSD 176
           I+  P+  TV  G    F C   G+ V TV W R G  +               + ++S 
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
           V+  D G Y    EN+ GK  A  TLT+Q
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 6e-11
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
              +P+S  V  G++A   C    G P PT+ W + G  +      ++      +     
Sbjct: 2   ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 87  S-RKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           S + +D+G Y  VV+N  G +E+    L +
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAE-FTLTI 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-17
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSL 172
            P I    +  TV  GS   F   V G       W + G  +                 L
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
            + DV  ED    + +A N  G+ S+ A L VQ+K
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 8e-12
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
           +   + +SQ V  G  A        G P+P   W KNG  I+  +       +     + 
Sbjct: 6   KIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64

Query: 86  --DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
             D    D         N+AG   S  A L V  K
Sbjct: 65  IRDVTGEDSASIMVKAINIAGETSSH-AFLLVQAK 98

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 3e-16
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQ 85
           +++ +   V A +T    C P  G+P PT+ W KNG     E+      V   +  L ++
Sbjct: 9   KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 67

Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
               +D G Y CVV+N  G+   T   L V+
Sbjct: 68  SVVPSDKGNYTCVVENEYGSINHT-YHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-15
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 119 PYIIRGPK----DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPS 169
           PY     K       V A + + F C  GG+ + T+ W + G    ++            
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
            SL +  V   D G Y C  EN  G I+ +  L V
Sbjct: 62  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 4e-16
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 118 KPYIIRG-PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-------------- 162
           +P +  G P + +   G  + F C V  DA   + W +                      
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 163 ---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
                +      L + +V  ED GEY C A N++G    SA LTV
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-11
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 16/100 (16%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--------------NSKRLRL 76
           P +     G      C       +P + W K+      +                     
Sbjct: 12  PANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTD 70

Query: 77  VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
            +   L I++    D G Y C+  N  G    + A L VL
Sbjct: 71  KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS-AWLTVL 109

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.4 bits (166), Expect = 6e-16
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 117 VKPYIIRGPK--DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS------VLP 168
           V P +       + T + G  +   C   G    T+ W + G  +  +            
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           S  L + +V   D  EYVC AEN  G+  AS  L V +K
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.0 bits (152), Expect = 7e-14
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID---FENSKRLRLVDGTNL 82
           + R    +     G +  L C    G PEPT+ W K+G PI+    ++ K +   D + L
Sbjct: 7   QARQSIVNATANLGQSVTLVC-DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSEL 65

Query: 83  AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
            I++  K D+  Y C+ +N AG ++++   L+V  K
Sbjct: 66  TIRNVDKNDEAEYVCIAENKAGEQDAS-IHLKVFAK 100

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.0 bits (157), Expect = 1e-14
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLPSRSL 172
           +KP I+   +   + AG     E    G    T  W         A      +   + S+
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
                +  D G Y  + +N +G+  A   + VQ
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (118), Expect = 4e-09
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 23  LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTN 81
           L+ +     +  ++ AG T  LE     G P+PT      +                 T+
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 82  LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
           +    +++ D G Y+  VKN  G  E+      V+V+
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAI---FEVIVQ 93

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 4e-14
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 121 IIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 179
            +   +  +V  G+ + F C+        T+ W RL +     R  +  +  L + +V+ 
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDFNGILTIRNVQP 63

Query: 180 EDGGEYVCEAENAVGKISASATLTVQ 205
            D G YVC   N       +ATL VQ
Sbjct: 64  SDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 2e-12
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
              + +SQ V  G      C      P  TLVW +  +           +     L I++
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNGILTIRN 60

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            + +D G Y C   N+    + T A L V
Sbjct: 61  VQPSDAGTYVCTGSNMFAMDQGT-ATLHV 88

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 5e-14
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM------SVLPSRSLQLSDVR 178
           P   TVS G  +   CSV G     + W + G+ +                  L L  V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 179 LEDGGEYVCEAENAVGK-ISASATLTVQ 205
             D G Y C+ E+     IS    LTV+
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 4e-13
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA---IQD 86
            P    V+ G    L C    G  EP + W K+G  +   +   + + +   +    ++ 
Sbjct: 2   APVKLTVSQGQPVKLNC-SVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 60

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
             ++D GRY C V++   T  S    L V
Sbjct: 61  VERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 5e-14
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           F+  P  Q    G+ A++ C        PT++WK  G  +  +   R  ++    L I+ 
Sbjct: 4   FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117
            +KTD+G Y+C  + +A   E     ++V+V
Sbjct: 63  IKKTDEGTYRCEGRILARG-EINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 4e-13
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQL 174
           K      P       G   V  C V      T+ WK  G       + R  VL +  LQ+
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
             ++  D G Y CE             + V
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 8e-14
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----LPSRSLQLS 175
           + +  +DTT   G  +  EC V  D      +K     +P  +             L + 
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
                D  EY             SA L+V  K
Sbjct: 63  GATKADAAEYSVMTTGGQS----SAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 9e-09
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LA 83
              Q +      G+   LEC       +  + W KNG  I      R R+        L 
Sbjct: 3   VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 84  IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
           I+ + K D   Y  +      +     A L V +K
Sbjct: 61  IEGATKADAAEYSVMTTGGQSS-----AKLSVDLK 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.6 bits (151), Expect = 9e-14
 Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 27  FRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 83
           F  QP       G   +   L C   R +P  T  WK NG  +      R RLV G  + 
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI 65

Query: 84  IQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114
               +  D G YQCV  N  GT  S +A LR
Sbjct: 66  SNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.1 bits (147), Expect = 4e-13
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 118 KPYIIRGPKDTTVSAGSI---IVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPSRS 171
            P     P  T    GS    +   C    +   T  WK  G+ +   P+ R  ++    
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKI-SASATL 202
           +  + V+ +D G Y C A NA G + S  A+L
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 6e-13
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLGSAMPED------------ 162
               +  P+D  V+ G  I F   V G ++L    V W +                    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 163 -RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
            R S +    L ++D +    G Y CE         ++  LTV 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-08
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 15/102 (14%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFENSKRLRLVDGT--- 80
           F ++P+   V  G +         G      P + W K           +   +  +   
Sbjct: 7   FVMRPQDGEVTVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65

Query: 81  -------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
                   L I D++    G Y+C V        S    L V
Sbjct: 66  ASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN-FNLTV 106

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.4 bits (145), Expect = 6e-13
 Identities = 20/89 (22%), Positives = 32/89 (35%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
            + QP        +  +LEC            WKK+G   +++        D  +L    
Sbjct: 5   LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLR 64

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            + +D+G YQC  +  AG   S     R 
Sbjct: 65  PQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.6 bits (135), Expect = 1e-11
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG----SAMPEDRMSVLPSRSLQ 173
            P +   P +      +  V EC + G+     +  +      +    +        SL 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
               +  D G Y C AE   G  S S  ++ +
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVAS-SRVISFR 92

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-12
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR-------LGSAMPEDRMSVLPSRS 171
           P+ +R  ++  V+AG    F+CS  G  V                    +   S     S
Sbjct: 3   PHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 61

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQ 205
             + +    D G+Y C      G   S  A L V+
Sbjct: 62  FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-11
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLAI 84
           ++ ++  V AG  A  +C    G           G  +     K +++        +  +
Sbjct: 6   LRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 64

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            ++ K D G+Y+C+++   G   S  A L V
Sbjct: 65  VNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 118 KPYIIRG--PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 175
            P +     P + T    S     C   G+ +  +   + G+                  
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE---------SV 52

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTVQS 206
            V  +  G Y+C A +  G+++   T+ V S
Sbjct: 53  TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 14/87 (16%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
           P +            C    G+P P L   K+G                         + 
Sbjct: 11  PGNWTWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPIGE------------SVTVTRD 57

Query: 91  DDGRYQCVVKNVAGTRESTDAVLRVLV 117
            +G Y C  ++  G   + +  + VL 
Sbjct: 58  LEGTYLCRARSTQGE-VTREVTVNVLS 83

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 2e-12
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA--- 83
                    V  G+ A+L C    G P     W K+G  +   ++K+ R    ++     
Sbjct: 5   KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 64

Query: 84  ------IQDSRKTDDGRYQCVVKNVAGTRESTDAV 112
                        D G Y C  +N  GT   ++A 
Sbjct: 65  KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 99

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 8e-12
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSR----- 170
           V P        ++V+ G+  V  CS   G       W + G +M         +      
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 171 -------SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV 211
                   L    V   D GEY C+A+N  G    S    + +  L V
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 108

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 4e-12
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
           F V+PK   V       L C         T+VW +    I                 +  
Sbjct: 4   FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------LNV 55

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           +  T    + C   N+ G   S  A + +
Sbjct: 56  TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-10
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           P+    PKD  V   +     C   G    +T+ W R  + +              L+  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 56

Query: 178 RLEDGGEYVCEAENAVGK-ISASATLTVQ 205
            +     + CEA N  G   S +AT+ +Q
Sbjct: 57  GVTQSTMFSCEAHNLKGLASSRTATVHLQ 85

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 5e-12
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--------IDFENSKRLRLV 77
                        G+ A+L C    G P     W K+G            F NS  +   
Sbjct: 4   SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 63

Query: 78  DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112
               L       +D G Y C  +N  GT  +++AV
Sbjct: 64  TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-11
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED-----------RM 164
           V P        ++ + G+  V  CS   G       W + G  MP +            +
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 165 SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
               +  L    +   D GEY CEA N  G    S  + ++
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-11
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------- 170
           P +        ++ G   +  C       +T       +   +  +              
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 171 ---SLQLSDVRLED-GGEYVCEAENAVGKISASATLTV 204
               L + ++ +E   G+Y C   ++ G   A  TL V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 26  EFRVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---D 78
             +    S+ +  G+TA+L C     PP        +       +   +  R  +     
Sbjct: 4   RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 63

Query: 79  GTNLAIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRV 115
            + L I++     D G+Y+C   +  G+ ++    LRV
Sbjct: 64  RSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 100

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-11
 Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 4/95 (4%)

Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGG---DAVLTVHWKRLGSAMPEDRMSVLPSRS- 171
                +   P  +    G  +   C V G    A LTV   R    +  +     P+   
Sbjct: 2   WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
             +   R   G ++ C  E  +            +
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 10/91 (10%), Positives = 19/91 (20%), Gaps = 1/91 (1%)

Query: 25  EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 84
           E   + P       G    L C    G P   L         + +    +         +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
              R     ++ C  +     +         
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLE-LFENT 94

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-11
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 122 IRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLGSAMPE-------------DRMS 165
           I  P+  TV  G  I F   V  + +L   T+ W +                    +R S
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
            + +  +Q+   +    G Y CE        S S  L V   
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 13/105 (12%)

Query: 27  FRVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVW--------KKNGHPIDFENSKRL 74
           F  +P+   V  G+                P              K   H    E  +R 
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 75  RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
             V    + I  ++    G Y+C V         +   L V    
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 5e-11
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 31  PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPID--------FENSKRLRLVDGT 80
           P S ++         C P    G P P+L W  NG  ++        F        V   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 81  NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 122
            L +      ++G Y  +  N  G   ++  +   +  P+  
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNPFEF 104

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 4e-10
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 14/97 (14%)

Query: 125 PKDTTVSAG---SIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-----------SVLPSR 170
           P    +             SV G    ++ W   GS + E                +   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
            L+L+     + G Y   A N  G+ SAS        
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-10
 Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 13/107 (12%)

Query: 113 LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA-----------MPE 161
           L V   P II   +      G     +C +                           +  
Sbjct: 2   LTVNG-PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 162 DRMSVLPSRSLQLSDVRLE-DGGEYVCEAENAVGKISASATLTVQSK 207
                    +L +S++        Y C A N+ G  +    L  Q  
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 1e-06
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----- 81
                ++Q    G+   ++C      P   + W    + ++   S R  +   +      
Sbjct: 9   IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 68

Query: 82  --LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 125
             L I +  R      Y C   N  G+       +R+  +   + GP
Sbjct: 69  STLTISNIVRADFQTIYNCTAWNSFGSDTEI---IRLKEQGSEMSGP 112

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 33/115 (28%)

Query: 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------------ 170
           R P    V AG+ +  +  + GD   TV W++  +   +      P              
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 171 ---------------------SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
                                   +     ED G Y    +N VG+   + T+ V
Sbjct: 74  DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 32/116 (27%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------------------- 67
           P +  V AG+   L+  P  G P PT++W+K     +                       
Sbjct: 16  PDTIVVVAGNKLRLDV-PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 74

Query: 68  ----FENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
                E   R+R+    D +   ++ + K D+G Y   VKN  G  +     ++V+
Sbjct: 75  KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN-LTVKVI 129

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.8 bits (128), Expect = 2e-10
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP------SRSLQLSDVR 178
            KD    AG + +  C  G + +   ++ + G  +  +    +        + L      
Sbjct: 10  SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 69

Query: 179 LEDGGEYVCEAENAVGKI-SASATLTV 204
            ED G Y CE +N VGK    S  LTV
Sbjct: 70  PEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.6 bits (125), Expect = 5e-10
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 31  PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG---HPIDFENSKRLRLVDGTNLAIQDS 87
            K     AGD  ++ C     +P     + KNG   +    +   R     G  L  + +
Sbjct: 10  SKDMMAKAGDVTMIYC-MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 68

Query: 88  RKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
              D+G Y C V N  G  +     L V+
Sbjct: 69  LPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 25  EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNL 82
           +EF  + +   ++  G   +  C PP  +P  +  W  N  P       R  +     NL
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 83  AIQDSRKTDDGRYQCVVKNVAGTREST 109
            I  +  +D G Y C   +       +
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITKS 90

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR----MSVLPSRS 171
           ++ +         ++ G  ++F CS       L+  W                    + +
Sbjct: 3   LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISAS-----ATLTV 204
           L ++     D G Y C A + +  I+ S     + L++
Sbjct: 63  LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 100

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAMPEDRMSVLPSRSL 172
           L++  + +      V  G    FE  +    V     +  + L ++   + +       L
Sbjct: 1   LIE--VEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58

Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
            L + +L   GE   +A NA     ++A L V+
Sbjct: 59  ILHNCQLGMTGEVSFQAANA----KSAANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 8/91 (8%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAI 84
           E         V  G+TA  E       P+    WK  G P+       +      + L +
Sbjct: 3   EVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60

Query: 85  QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            + +    G       N         A L+V
Sbjct: 61  HNCQLGMTGEVSFQAANAKSA-----ANLKV 86

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-10
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           KP +   P    +  G  +   C+      ++              +S   + SL + + 
Sbjct: 1   KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKW-----FHNGSLSEETNSSLNIVNA 55

Query: 178 RLEDGGEYVCEAENAVGKISASATLTVQS 206
           + ED GEY C+ +      S    L V S
Sbjct: 56  KFEDSGEYKCQHQQVNE--SEPVYLEVFS 82

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             + P   R+  G+   L C         +  W  NG   +  N         ++L I +
Sbjct: 4   VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN---------SSLNIVN 54

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
           ++  D G Y+C  + V     S    L V 
Sbjct: 55  AKFEDSGEYKCQHQQVNE---SEPVYLEVF 81

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-09
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 18/106 (16%)

Query: 118 KPYIIRGPKDT-TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------ 170
           +P I+    +T  V  GS I   C+V G      +WK  GS + ED   +          
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 171 ----------SLQLSDVRLED-GGEYVCEAENAVGKISASATLTVQ 205
                      L +S++        + C A+N  G  +A   L   
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 106

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 16/102 (15%)

Query: 30  QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-------- 81
             ++  V  G    L C    G       WK NG  ID ++                   
Sbjct: 8   ANETMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRS 66

Query: 82  -----LAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLV 117
                L I +         + C  KN  G   +    L   V
Sbjct: 67  TLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY-IQLIYPV 107

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 125 PKDTTVSAGSIIVFECSV-GGDAVLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVRL 179
                 SA  I V  C +   +   T+ W     +   +  +          L     ++
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 180 EDGGEYVCEAENAVGKISASATLTVQSK 207
           ED G Y C   N+   +    +      
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKFVEN 96

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-09
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQD 86
           R +      +A +  +  C       + T+ W K+         +  R+      L    
Sbjct: 6   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVP 65

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
           ++  D G Y CVV+N +          + +   
Sbjct: 66  AKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENE 97

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-09
 Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHW-KRLGSAMPEDRMSVLPSRSLQLS 175
            P         T   G  +   C     +   TVHW  R  +A           R L L 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTVQ 205
            V+L D G Y C           +  L V 
Sbjct: 66  SVQLHDSGNYSCYRAGRPA---GTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
              V         GD+  L C         T+ W                   G  L ++
Sbjct: 8   AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP--SRWAGMGRRLLLR 65

Query: 86  DSRKTDDGRYQCVVKN-VAGT 105
             +  D G Y C      AGT
Sbjct: 66  SVQLHDSGNYSCYRAGRPAGT 86

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 2e-09
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM------------S 165
           K  +     D  V     I   C+  G +   V WK +  +                   
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
              S  +  S V  +D GEY C      G+     ++ + 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 11/98 (11%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------ENSKRLRLVDG 79
                 +V   ++  L C    G   P + WK                            
Sbjct: 6   TAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS 64

Query: 80  TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVL 116
           + +      + D+G Y C+V    G      ++ L VL
Sbjct: 65  SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 5e-09
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
           +Q        G+T +L C   +  P   + + +NG    F  S            I  + 
Sbjct: 5   LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFS-------IPQAN 57

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRV 115
            +  G Y C          S    + V
Sbjct: 58  HSHSGDYHCTGNIGYTLYSSKPVTITV 84

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 120 YIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
           +++          G  IV  C       ++ V + +      + +       +  +    
Sbjct: 2   WLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQ----NGKSKKFSRSDPNFSIPQAN 57

Query: 179 LEDGGEYVCEAENAVG-KISASATLTVQ 205
               G+Y C          S   T+TVQ
Sbjct: 58  HSHSGDYHCTGNIGYTLYSSKPVTITVQ 85

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 5e-09
 Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 11/94 (11%)

Query: 118 KPYIIRGPKDT-TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRS 171
                +  +    VS G  I     +       V W + G  +       +       R+
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
           L +S   L D   Y C           S  L V+
Sbjct: 64  LTISQCSLADDAAYQCVVGGE----KCSTELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-07
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 13  EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK 72
           +EKK           +    + +V+ G    L         +  + W KNG  I    SK
Sbjct: 1   DEKKSTAF------QKKLEPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSGSK 52

Query: 73  RLRLVDGTN--LAIQDSRKTDDGRYQCVVKNVAGT 105
            +    G    L I      DD  YQCVV     +
Sbjct: 53  YIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCS 87

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-09
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 125 PKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGG 183
            +      G     +CS   + A +   ++         +  ++  ++L + ++   D G
Sbjct: 4   YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 63

Query: 184 EYVCEAENAVGKISASATLTVQSKYLKVI 212
            Y C +E  V   +    +      +KV+
Sbjct: 64  VYQCLSEERVKNKTVFQVVAKHVLEVKVV 92

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
           +   +      G TA L+C            + K  + +    S +  L+   NL I + 
Sbjct: 1   KGSYRQHFFKHGGTAELKCSQKSNLARV---FWKFQNGVLKAESPKYGLMGRKNLLIFNL 57

Query: 88  RKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117
            + D G YQC+ +     +     V+   V
Sbjct: 58  SEGDSGVYQCLSEERVKNKTVF-QVVAKHV 86

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (116), Expect = 8e-09
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 81
           +  + P    ++ G++    C       +  + W          N +R+ +V    D + 
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 82  LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           L I ++   D G Y+CVV    GT+      +++
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (103), Expect = 7e-07
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRMSVL----PSRSLQLSD 176
           P    +S G    F C V GDA    +          +  + R+SV+     S +L + +
Sbjct: 7   PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 66

Query: 177 VRLEDGGEYVCEAENAVGKIS-ASATLTV 204
             ++D G Y C      G  S A+  + +
Sbjct: 67  ANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 23/98 (23%), Positives = 28/98 (28%), Gaps = 11/98 (11%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS------ 171
              I+   + ++ AG     EC V        V W +L             S        
Sbjct: 4   QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63

Query: 172 ---LQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQ 205
              L    V   D G Y C A      I S S TL V 
Sbjct: 64  FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS------KRLRLVDGT 80
           +  +     + AGD   LEC        P + W K       +        K  + +   
Sbjct: 6   YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF 65

Query: 81  NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
            L  +     D+G Y+C     +   ES    L V 
Sbjct: 66  ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
           +Q  ++ V  G    L C   R      +++ K+G  + +            N++I ++ 
Sbjct: 5   LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------NISITNAT 57

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
             D G Y C  K      ES    + V+  P
Sbjct: 58  VEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 121 IIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 179
           +++      V  G  +   C       V  V + + G A+     +     ++ +++  +
Sbjct: 4   LLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN----HNISITNATV 58

Query: 180 EDGGEYVCEAENAVG-KISASATLTVQ 205
           ED G Y C  +       S    +TV 
Sbjct: 59  EDSGTYYCTGKVWQLDYESEPLNITVI 85

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-08
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 115 VLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--------RMSV 166
           V   P ++   +        I   E  V G+   T+HW   G  + E         +   
Sbjct: 2   VYYPPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 58

Query: 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           +    L  +     + G Y   A+N +G  + +       +
Sbjct: 59  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 31  PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLA 83
           P+   +   +  L  C     RG+P PTL W  NG P+           +   +    L 
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65

Query: 84  IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 122
                  ++G Y  + KN  GT   T      L +P+ +
Sbjct: 66  FNKPTHYNNGNYTLIAKNPLGTANQT-INGHFLKEPFPV 103

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 2/90 (2%)

Query: 26  EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
             +VQ  +  V  GD  LL C            W            K   L         
Sbjct: 4   TLKVQVPNASVDVGDDVLLRCQVEG-RGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
            +   +     C  +N  G  E +   + V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVS-VQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQLS 175
           P +     + +V  G  ++  C V G  +    W        A       +        +
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTV 204
                +     C AEN VG+   S  + V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-08
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 117 VKPYIIRGPK-DTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 174
           VKP  +  P+    V+ G+     C +   D   +V W+           S      L +
Sbjct: 1   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSLGAVQSDTGRSVLTV 59

Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
            +  L   G  VC           +  L V
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 28  RVQPKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 81
              P    + +  +    C P   +G+P+P L W  NG  ++       ++    +    
Sbjct: 2   HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 82  --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 121
             L + +    ++G Y  + KN  G  E        +  P I
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-07
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 125 PKDTTVSAGSI---IVFECSVGGDAVLTVHWKRLGSAMP---------EDRMSVLPSRSL 172
           P  T + + +         +V G+    + W   G+ +                     L
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
           QL +    + G+Y   A+N  GK     +      
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-08
 Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 7/89 (7%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 177
           K  +   P+   V     +   C                       +    ++       
Sbjct: 4   KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQW-----FHNGNLIPTHTQPSYRFKA 58

Query: 178 RLEDGGEYVCEAENAVGKISASATLTVQS 206
              D GEY C+        S    LTV S
Sbjct: 59  NNNDSGEYTCQTGQTSL--SDPVHLTVLS 85

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-05
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
            +++P+   V   D+  L C         ++ W  NG+ I                    
Sbjct: 7   LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPS---------YRFK 57

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
           +   D G Y C     +    S    L VL
Sbjct: 58  ANNNDSGEYTCQTGQTSL---SDPVHLTVL 84

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-08
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 7/87 (8%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
           +Q         D   L C   +      + + +NG    + +             I  + 
Sbjct: 7   LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKAT 59

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRV 115
             D G Y C     +    S    + +
Sbjct: 60  LKDSGSYFCRGLVGSKNVSSETVNITI 86

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 7/89 (7%)

Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 175
           L K  +   P+  +V     +  +C                     + +    + S  + 
Sbjct: 3   LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQW-----FHNESLISSQASSYFID 57

Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTV 204
              + D GEY C+   +    S    L V
Sbjct: 58  AATVNDSGEYRCQTNLSTL--SDPVQLEV 84

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 12/89 (13%)

Query: 27  FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
             ++P+   V   D+  L+C       + +  W  N   I  + S            I  
Sbjct: 8   VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY---------FIDA 58

Query: 87  SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           +   D G Y+C          S    L V
Sbjct: 59  ATVNDSGEYRCQTNLSTL---SDPVQLEV 84

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.4 bits (111), Expect = 6e-08
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 8/95 (8%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGT 80
            +   +    G    L+C  P  +P+P + WKK     D                  +  
Sbjct: 7   AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 66

Query: 81  NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
              +     +D  +Y C  KN A   E       +
Sbjct: 67  FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 101

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 16/103 (15%)

Query: 120 YIIRGP---KDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR--------MSVL 167
           Y+I  P    + T   G     +C +        + WK+  S    +         ++  
Sbjct: 1   YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 60

Query: 168 PSRSLQLSDVRLE---DGGEYVCEAENAVGKISAS-ATLTVQS 206
           P  +L  + V  E   D  +YVC A+NA            ++ 
Sbjct: 61  PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 103

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 1e-07
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 29  VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
           +Q  +  V   D+  L C           +             +     + + L I   +
Sbjct: 8   LQVTNTTVKELDSVTLTC--LSNDIGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIK 64

Query: 89  KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
           + D G YQC + N    R S    L ++  P
Sbjct: 65  REDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 6e-07
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQL 174
           + +P++     +TTV     +   C                S    +RM++  +   L++
Sbjct: 3   VTQPFLQ--VTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRI 60

Query: 175 SDVRLEDGGEYVCEAENAVGKI-SASATLTVQ 205
             ++ ED GEY CE  N V    S S  L + 
Sbjct: 61  DPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 27/125 (21%)

Query: 26  EFRVQPKSQRVAA--GDTALLEC--GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN 81
           +FRV      + A  GD A L C   P +      + W ++         +  +  D   
Sbjct: 2   QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQ 61

Query: 82  ---------------------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 120
                                L IQ+ R +D+G Y C  ++ +   E+    L+V   P+
Sbjct: 62  APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVED-PF 119

Query: 121 IIRGP 125
               P
Sbjct: 120 YWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 27/118 (22%)

Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLT--------------VHWKRLGSAMPEDRMSV 166
           +I          G      C +      T              VH  R G     ++   
Sbjct: 5   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 167 LPSR-------------SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV 211
              R             +L++ +VR  D G Y C   +   +  A+  L V+  +  +
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI 122

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 9/96 (9%)

Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGG---DAVLTVHWKRLG------SAMPEDRMSVLPS 169
             +I   + T V+ G     EC V        LT+   R        +           +
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
            +   +  R +    + C A   +     +      
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 98

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 12/103 (11%)

Query: 25  EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV--WKKNGHPIDFENSKRLRLVDGTN- 81
            +  +  +   VA G +  +EC  P   P  +L     +    + +E   +         
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 82  --LAIQDSRKTDDGRYQCVVKNVAGTRE-------STDAVLRV 115
                   R+     + C+      +R        S   +L +
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEI 105

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 12/100 (12%)

Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK------------RLGSAMPEDRMS 165
              +     +  +   + +   C+  G +   V WK                    +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
                 +    V  ED G Y C      G       + + 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-06
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 28  RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---------VD 78
                  R+   +   L C    G   P + WK +            ++           
Sbjct: 8   HSSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66

Query: 79  GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117
            T +  +   + D G Y C+V    G        ++++V
Sbjct: 67  PTGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKLIV 104

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 9/84 (10%), Positives = 21/84 (25%), Gaps = 7/84 (8%)

Query: 129 TVSAGSIIVFEC------SVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLED 181
            +         C          + +  + W +    +   +         L + +V  + 
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH 69

Query: 182 GGEYVCEAENAVGKISASATLTVQ 205
            G Y C A           T  ++
Sbjct: 70  RGNYTCHASYTYLGKQYPITRVIE 93

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-07
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 160 PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
                 +L +  L++ ++  +D G Y     +  G    +  L ++
Sbjct: 50  KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 95

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 33  SQRV--AAGDTALLEC-GPPRGHPEPTLVWKKNGHPIDFEN--------SKRLRLVDGTN 81
           S  V  A G    L             + W++    +            S    ++   +
Sbjct: 2   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 61

Query: 82  LAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVL 116
           L I++  + D G Y   V +  GTR    A+ LR+L
Sbjct: 62  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 97

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 15/93 (16%)

Query: 125 PKDTTVSAGSIIVFECSVG--GDAVLTVHWKRLGSAMPEDRMSVLPSR-----------S 171
            +         + F          VL    K   + +         S            S
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
           L + ++   D  EY  E+ N     +    L V
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 18/97 (18%)

Query: 33  SQRVAA--GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---------LVDGTN 81
           SQ++              P   P   ++WKK    +    +   R          +D  +
Sbjct: 2   SQQIYGVVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59

Query: 82  --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
             L I +   +D+  Y+    N+  T +     L VL
Sbjct: 60  GSLTIYNLTSSDEDEYEMESPNITDTMKFF---LYVL 93

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 2e-06
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 113 LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS- 171
            ++   P             G  +   CS  G       W+    +    +++   + S 
Sbjct: 1   FKIETTP-----ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTST 55

Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
           L ++ V   +   Y+C A     K+     + + S
Sbjct: 56  LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS 90

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 1e-05
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 179
           + +    DT +  G  +         +  +V              ++   ++L +S + L
Sbjct: 1   FGLTANSDTHLLQGQSLTLTLESPPGSSPSVQC------RSPRGKNIQGGKTLSVSQLEL 54

Query: 180 EDGGEYVCEAENAVGKISASATLTVQ 205
           +D G + C       K+     + V 
Sbjct: 55  QDSGTWTCTVLQNQKKVEFKIDIVVL 80

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 8e-04
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 12/94 (12%)

Query: 27  FRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 85
           F +   S   +  G +  L    P G           G  I    +            + 
Sbjct: 1   FGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS----------VS 50

Query: 86  DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
                D G + C V       E     + VL   
Sbjct: 51  QLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQ 83

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 16/103 (15%)

Query: 29  VQPKSQRVAAGDTALLEC--------------GPPRGHPEPTLVWKKNGHPIDFEN--SK 72
           ++    +VA  +  LL                G      +    +  N +        S 
Sbjct: 4   IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63

Query: 73  RLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
           R  +    +L  Q     D G Y   + +    R        V
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 161 EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTV 204
             R  +  + SL    + ++D G Y  +  +   +   A+    V
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
           S+ +++++L D G Y C+ + A G  +    L V
Sbjct: 89  SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 29/117 (24%)

Query: 29  VQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKK---------------------NGH 64
              +    A G+TA L C     P       + W                       + +
Sbjct: 9   TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDY 68

Query: 65  PIDFENSKRLRLVDGTN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117
             D +        D  +    + + + + +D G YQC VK   G        L VLV
Sbjct: 69  YPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-IHLVVLV 124

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 36  VAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT--- 90
           + AG    ++C     +P     +   K  H +  +                +   T   
Sbjct: 13  LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 72

Query: 91  -DDGR-YQCVVKNVAGTRES------TDAVLRVLVKP 119
            D G+   C  K      +S          L+V + P
Sbjct: 73  EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 109

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 6/35 (17%), Positives = 18/35 (51%)

Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
           S+ + ++   D G + C+ +N    +  ++ +T+ 
Sbjct: 82  SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
              P    V + +T +L+C          L  +   +       +    V   N +I  
Sbjct: 5  LLAHP-GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 63

Query: 87 SRKTDDGRYQC 97
            +   G Y+C
Sbjct: 64 MTQDLAGTYRC 74

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 36  VAAGDTALLEC--GPPRGHPEPTLVWKKNGHP-------------IDFENSKRLRLVDGT 80
               + A L C           T ++ +                  +++N     + +  
Sbjct: 6   KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65

Query: 81  NLAIQDSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLVK 118
           ++ I   R +D+G Y+CVV        +    A + + VK
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.7
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.7
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.69
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.69
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.68
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.68
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.68
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.68
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.68
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.67
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.66
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.66
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.66
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.66
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.65
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.65
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.63
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.63
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.63
d2avga1	110	Cardiac myosin binding protein C, different domain	99.62
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.62
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.61
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.61
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.61
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.61
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.61
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.61
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.6
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.6
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.59
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.59
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.59
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.58
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.58
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.58
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.56
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.56
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.56
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.55
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.54
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.54
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.54
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.54
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.53
d2avga1	110	Cardiac myosin binding protein C, different domain	99.53
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.51
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.49
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.48
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.48
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.48
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.48
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.47
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.47
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.46
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.46
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.45
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.45
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.43
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.41
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.4
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.38
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.36
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.36
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.36
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.35
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.34
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.34
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.32
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.32
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.31
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.29
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.28
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.18
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.17
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.16
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.11
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	99.07
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.04
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.04
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	99.03
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.02
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.01
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.0
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.0
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	99.0
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.99
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.99
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.96
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.96
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.95
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.94
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.93
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.92
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.91
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.91
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.9
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.89
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.89
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.87
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.86
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.86
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.86
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.86
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.85
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.85
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.85
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.85
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.84
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.84
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.84
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.82
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.82
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.81
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.81
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.8
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.8
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.8
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.79
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.79
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.79
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.77
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.77
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.77
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.76
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.76
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.75
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.75
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.74
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.73
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.73
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.73
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.73
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.72
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.72
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.72
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.71
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.71
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.7
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.69
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.69
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.69
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.68
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.68
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.68
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.67
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.66
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.63
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.62
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.61
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.61
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.6
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.6
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.59
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.59
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.59
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.58
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.58
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.57
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.57
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.57
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.57
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.56
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.56
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.55
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.55
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.55
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.55
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.54
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.53
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.5
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.5
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.5
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.49
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.49
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.49
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.48
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.48
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.48
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.47
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.46
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.45
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.45
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.44
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.44
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.43
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.42
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.42
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.42
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.41
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	98.4
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.4
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.38
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.37
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.37
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.36
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.36
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.36
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.36
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.36
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.35
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.35
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.33
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.33
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.32
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.32
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.31
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.31
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.3
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.28
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.27
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.26
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.26
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.26
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.23
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.23
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.23
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.23
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.22
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.21
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.21
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.19
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.19
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.19
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.19
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.17
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.15
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.15
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.15
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.14
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.14
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.14
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.12
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.12
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.11
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.11
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.09
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.08
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.08
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.08
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.07
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.06
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.05
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.02
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.02
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.02
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.01
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.01
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.01
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.01
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.01
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.01
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.0
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.99
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.99
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.98
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.97
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.97
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.96
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.95
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.95
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.94
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.94
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.94
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.93
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.93
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.92
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.92
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.92
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.91
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.9
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.9
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.89
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.89
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.88
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.87
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.87
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.85
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.84
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.83
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.82
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.82
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.82
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.81
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.8
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.79
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.78
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.77
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.77
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.77
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.77
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.77
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.77
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.76
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.76
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.75
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.75
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.74
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.73
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.72
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.71
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.69
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.69
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.68
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.67
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.67
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.66
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.65
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.65
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.64
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.63
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.61
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.6
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.59
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.58
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.58
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.57
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.57
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.55
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.55
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.54
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.51
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.49
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.49
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.48
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.48
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.48
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.46
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.44
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.42
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.42
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.42
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.41
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.4
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.4
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.39
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.38
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.37
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.35
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.34
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.34
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.31
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.31
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.3
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.3
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.29
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.29
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.28
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.28
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.27
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.25
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.23
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.22
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.19
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.19
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.18
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.13
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.11

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=2.5e-19  Score=104.70  Aligned_cols=88  Identities=34%  Similarity=0.512  Sum_probs=78.6

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      |.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|.|.|+|.+.|..|....
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYA   81 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEE
Confidence            66777888899999999999999999999999999999988766555556788999999999999999999999999888


Q ss_pred             EEEEEEEe
Q psy573          199 SATLTVQS  206 (216)
Q Consensus       199 ~~~l~v~~  206 (216)
                      ++.|.|++
T Consensus        82 ~~~l~V~A   89 (89)
T d1cs6a4          82 SAELTVQA   89 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99988864

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.5e-18  Score=101.16  Aligned_cols=93  Identities=30%  Similarity=0.386  Sum_probs=78.4

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... +....   ...+|.|.++..+|+|.|+|.+.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            44556677889999999999999999999999999999988654 33332   224699999999999999999999999


Q ss_pred             ceEEEEEEEEEecceee
Q psy573          195 KISASATLTVQSKYLKV  211 (216)
Q Consensus       195 ~~~~~~~l~v~~~p~~~  211 (216)
                      ..+.++.|.|.+.|..+
T Consensus        81 ~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          81 SRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             EEECCEEEEEECSCSCC
T ss_pred             EEEEEEEEEEEecCCCc
Confidence            99999999999887644

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.76  E-value=6.9e-18  Score=98.53  Aligned_cols=86  Identities=24%  Similarity=0.397  Sum_probs=73.5

Q ss_pred             cceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          118 KPYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       118 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      +|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+.... ...|.|.++..+|.|.|.|.+.|..|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEe-eeeEEECCCChhhCEEEEEEEEECCCEE
Confidence            4666665544 4678999999999999999999999999999877665543 5679999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy573          197 SASATLTV  204 (216)
Q Consensus       197 ~~~~~l~v  204 (216)
                      ...+.|.|
T Consensus        81 ~~~~~l~V   88 (89)
T d1biha4          81 YFETLVQV   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=4.8e-18  Score=101.00  Aligned_cols=91  Identities=24%  Similarity=0.336  Sum_probs=76.6

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....   ....|.|.++..+|.|.|+|.+.|..|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            667777888899999999999999999999999999999876432 2222   123699999999999999999999999


Q ss_pred             ceEEEEEEEEEecce
Q psy573          195 KISASATLTVQSKYL  209 (216)
Q Consensus       195 ~~~~~~~l~v~~~p~  209 (216)
                      ..+.++.|.|...+.
T Consensus        82 ~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          82 TKEEIVFLNVTRHSE   96 (97)
T ss_dssp             EEEEEECCEEECSCC
T ss_pred             EEEEEEEEEEeecCC
Confidence            999999999986553

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=2e-17  Score=98.43  Aligned_cols=90  Identities=28%  Similarity=0.331  Sum_probs=76.7

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee--cC--CeEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL--PS--RSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~--~~--~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... +....  .+  ..|.|.++..+|.|.|+|.+.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            3577777888889999999999999999999999999999988654 22221  22  3699999999999999999999


Q ss_pred             CCcceEEEEEEEEEe
Q psy573          192 AVGKISASATLTVQS  206 (216)
Q Consensus       192 ~~~~~~~~~~l~v~~  206 (216)
                      ..|....++.|.|++
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998875

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=1.6e-17  Score=97.48  Aligned_cols=88  Identities=27%  Similarity=0.518  Sum_probs=72.6

Q ss_pred             ecceEEe-CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          117 VKPYIIR-GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       117 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++......  ....++.|.|.++..+|+|.|+|.+.|..|.
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGR   80 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence            3565554 367778999999999999999999999999977654322  2235678999999999999999999999999


Q ss_pred             eEEEEEEEEEe
Q psy573          196 ISASATLTVQS  206 (216)
Q Consensus       196 ~~~~~~l~v~~  206 (216)
                      ....+.|.|.+
T Consensus        81 ~~~~~~l~V~A   91 (91)
T d1cs6a3          81 DTYQGRIIIHA   91 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEC
Confidence            99898888863

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.74  E-value=2.1e-17  Score=99.12  Aligned_cols=89  Identities=31%  Similarity=0.532  Sum_probs=76.3

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee--c--CCeEEEecCCCCCCeEEEEEEEcC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--P--SRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~--~--~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      +|.+...+.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+.... ....  .  ..+|.|.++..+|.|.|+|.+.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            5677777888899999999999999999999999999999886543 3322  1  246999999999999999999999


Q ss_pred             CcceEEEEEEEEEe
Q psy573          193 VGKISASATLTVQS  206 (216)
Q Consensus       193 ~~~~~~~~~l~v~~  206 (216)
                      .|..+.++.|.|++
T Consensus        88 ~G~~~~~~~L~V~s  101 (102)
T d1fhga_          88 LGEATCTAELLVET  101 (102)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEEE
Confidence            99999999998875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=1.1e-17  Score=98.62  Aligned_cols=88  Identities=23%  Similarity=0.301  Sum_probs=74.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+... +....   ....|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            466777778889999999999999999999999999999877543 22222   22469999999999999999999999


Q ss_pred             cceEEEEEEEEE
Q psy573          194 GKISASATLTVQ  205 (216)
Q Consensus       194 ~~~~~~~~l~v~  205 (216)
                      |..+..+.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999999888874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.1e-17  Score=96.85  Aligned_cols=93  Identities=26%  Similarity=0.360  Sum_probs=74.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-cEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.|...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+............+ ..|.|.++..+|+|.|+|.+.|..
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            456667788899999999999998 788999999999999885443333333333 369999999999999999999988


Q ss_pred             CCcccceeEEEEeecc
Q psy573          104 GTRESTDAVLRVLVKP  119 (216)
Q Consensus       104 ~~~~~~~~~l~v~~~p  119 (216)
                      |.. ...+.|.|...|
T Consensus        80 G~~-~~~~~l~V~~~P   94 (101)
T d2cqva1          80 GSR-QAQVNLTVVDKP   94 (101)
T ss_dssp             CEE-ECCEEEEEECSC
T ss_pred             CEE-EEEEEEEEEecC
Confidence            875 556788887765

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=5.3e-17  Score=94.65  Aligned_cols=87  Identities=26%  Similarity=0.500  Sum_probs=72.4

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |.|...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ..++.. .++.|.|.++..+|+|.|+|.+.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~--~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLAS--QNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEE-EEESCCEEEEEETTEECCC--CSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEE-EEEcCCEEEEEEeeccccc--cceeee-eeeeEEEEeecccCCEEEEEEEEeCCC
Confidence            678888999999999999999998 7889999999999998843  334444 356899999999999999999999888


Q ss_pred             CcccceeEEEEe
Q psy573          105 TRESTDAVLRVL  116 (216)
Q Consensus       105 ~~~~~~~~l~v~  116 (216)
                      .. .....|.|.
T Consensus        78 ~~-~~~~~l~V~   88 (89)
T d1cs6a4          78 TV-YASAELTVQ   88 (89)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             EE-EEEEEEEEE
Confidence            65 345666654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.70  E-value=5e-17  Score=94.46  Aligned_cols=85  Identities=19%  Similarity=0.333  Sum_probs=66.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +++.+....+.+|++++|.|.+..+.|.+.+.|||++..+...       ..+..|.|.+++.+|+|.|.|.+.|..+..
T Consensus         3 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------RSDPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             EEEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------SSCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------ccccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            3455556678999999999988445677799999999877321       234679999999999999999999987765


Q ss_pred             ccceeEEEEeec
Q psy573          107 ESTDAVLRVLVK  118 (216)
Q Consensus       107 ~~~~~~l~v~~~  118 (216)
                      .+..+.|.|..+
T Consensus        76 ~S~~v~l~V~~P   87 (88)
T d2fcba2          76 SSKPVTITVQAP   87 (88)
T ss_dssp             ECCCEEEEECCC
T ss_pred             EeeeEEEEEeCC
Confidence            566677777654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=8.8e-17  Score=95.99  Aligned_cols=89  Identities=27%  Similarity=0.414  Sum_probs=70.9

Q ss_pred             cceEEeCCCce--eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC----e-ee-ecCCeEEEecCCCCCCeEEEEEE
Q psy573          118 KPYIIRGPKDT--TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----M-SV-LPSRSLQLSDVRLEDGGEYVCEA  189 (216)
Q Consensus       118 ~p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~----~-~~-~~~~~l~i~~~~~~d~g~y~C~~  189 (216)
                      +|.+...+...  .+..|+++.|.|.+.|.|.|.+.|++++..+....    . .. ...+.|.|.++..+|.|.|.|.+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            55555544433  45679999999999999999999999998775321    1 11 23467999999999999999999


Q ss_pred             EcCCcceEEEEEEEEEe
Q psy573          190 ENAVGKISASATLTVQS  206 (216)
Q Consensus       190 ~n~~~~~~~~~~l~v~~  206 (216)
                      .|..|.....+.|.|.+
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.70  E-value=9.9e-17  Score=93.33  Aligned_cols=85  Identities=14%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      .+.+.++...+.+|++++|.|.+..+.|.+.+.||+++..+..       ...+..|.|.+++.+|+|.|.|.+.+..+.
T Consensus         4 ~Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2           4 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             SEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-------eccccccEECccceeccceEEEEEEeCCCC
Confidence            3455666677899999999998744667779999999987732       223457999999999999999999987766


Q ss_pred             cccceeEEEEee
Q psy573          106 RESTDAVLRVLV  117 (216)
Q Consensus       106 ~~~~~~~l~v~~  117 (216)
                      ..+..+.|.|..
T Consensus        77 ~~S~~v~itV~E   88 (89)
T d1fnla2          77 VSSETVNITITQ   88 (89)
T ss_dssp             EECCCEEEEEEC
T ss_pred             eEEeeEEEEEEe
Confidence            555666676653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=95.33  Aligned_cols=92  Identities=26%  Similarity=0.326  Sum_probs=73.5

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .+|.|...+.+..+.+|+.+.|.|.+ .+.|.+.+.||+++..+............+  ..|.|.++...|+|.|+|.+.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            36888888999999999999999998 788999999999999985433322222222  379999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..|.. .....|.|.
T Consensus        82 N~~G~~-~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGET-SSHAFLLVQ   96 (98)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ECCcEE-EEEEEEEEE
Confidence            988875 445666664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-16  Score=91.22  Aligned_cols=82  Identities=24%  Similarity=0.372  Sum_probs=66.5

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-e
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-I  196 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~  196 (216)
                      |.+...|.+..+..|+.+.|.|.+.|.|.| ++.|++++..+....     .+.+.|.....+|+|.|+|.|.|..|. .
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~   76 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLAS   76 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcEE
Confidence            567777888899999999999999999987 899999998876432     234566677778999999999999996 4


Q ss_pred             EEEEEEEEE
Q psy573          197 SASATLTVQ  205 (216)
Q Consensus       197 ~~~~~l~v~  205 (216)
                      ++.+.|.|+
T Consensus        77 S~~~~v~Vk   85 (85)
T d1rhfa2          77 SRTATVHLQ   85 (85)
T ss_dssp             CCCEEEEEC
T ss_pred             EEEEEEEEC
Confidence            456666653

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.9e-16  Score=90.67  Aligned_cols=81  Identities=27%  Similarity=0.441  Sum_probs=69.1

Q ss_pred             CCCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          124 GPKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+...+.. ..++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l   86 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL   86 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-eeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            35566888999999999996 6788999999998887665543 346789999999999999999999999999988888


Q ss_pred             EEE
Q psy573          203 TVQ  205 (216)
Q Consensus       203 ~v~  205 (216)
                      .|+
T Consensus        87 ~V~   89 (89)
T d1gl4b_          87 HVQ   89 (89)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            774

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=3.6e-17  Score=96.61  Aligned_cols=89  Identities=22%  Similarity=0.423  Sum_probs=71.1

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .|.|...|.++.+.+|+.+.|.|.+ .+.|.+ .+.|+++|..+............+++|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEe-cCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence            4677788888999999999999998 666655 79999999988654444444445678999999999999999999998


Q ss_pred             CCCcccceeEE
Q psy573          103 AGTRESTDAVL  113 (216)
Q Consensus       103 ~~~~~~~~~~l  113 (216)
                      .|...+..+.|
T Consensus        81 ~G~~~s~~v~l   91 (94)
T d1biha1          81 AGVASSRVISF   91 (94)
T ss_dssp             TEEEECCCEEE
T ss_pred             CCEEEEEEEEE
Confidence            88654444443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.68  E-value=1.3e-16  Score=95.59  Aligned_cols=91  Identities=24%  Similarity=0.452  Sum_probs=73.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEc
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.|...+.+..+.+|+++.|.|.+ .+.|.+.+.|++++..+............+  .+|.|.++..+|+|.|+|.+.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            5778888889999999999999998 788999999999999985444333333332  4799999999999999999999


Q ss_pred             CCCCcccceeEEEEe
Q psy573          102 VAGTRESTDAVLRVL  116 (216)
Q Consensus       102 ~~~~~~~~~~~l~v~  116 (216)
                      ..|.. ..++.|.|.
T Consensus        87 ~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEA-TCTAELLVE  100 (102)
T ss_dssp             TTEEE-EEEEEEEEE
T ss_pred             CCcEE-EEEEEEEEE
Confidence            88865 445666654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=91.62  Aligned_cols=77  Identities=16%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+      ......|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~   81 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA   81 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCE------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccc------eeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEe
Confidence            346889999999999999999999999976543      23457799999999999999999999999999999999987


Q ss_pred             cce
Q psy573          207 KYL  209 (216)
Q Consensus       207 ~p~  209 (216)
                      .|+
T Consensus        82 ~~k   84 (84)
T d2nxyb2          82 FQK   84 (84)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            663

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.68  E-value=2.3e-17  Score=96.81  Aligned_cols=83  Identities=34%  Similarity=0.538  Sum_probs=69.9

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      ..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....   ....|.|.++..+|+|.|.|.+.|..|..+.
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   83 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE
Confidence            45677889999999999999999999999999998876432 2222   3367999999999999999999999999888


Q ss_pred             EEEEEEE
Q psy573          199 SATLTVQ  205 (216)
Q Consensus       199 ~~~l~v~  205 (216)
                      .+.|.|+
T Consensus        84 ~~~l~V~   90 (91)
T d1tnna_          84 EFTLTIQ   90 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            8888775

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.6e-16  Score=91.37  Aligned_cols=80  Identities=15%  Similarity=0.285  Sum_probs=66.8

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+....... ...+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            3456789999999999999999999999887665443332 234679999999999999999999999999999998875


Q ss_pred             e
Q psy573          206 S  206 (216)
Q Consensus       206 ~  206 (216)
                      +
T Consensus        90 s   90 (90)
T d1vcaa2          90 S   90 (90)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=5.6e-17  Score=96.30  Aligned_cols=91  Identities=24%  Similarity=0.375  Sum_probs=71.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.|...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+............ ...|.|.++..+|+|.|.|.+.|..
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            678888999999999999999998 78899999999999988543322221111 2369999999999999999999988


Q ss_pred             CCcccceeEEEEee
Q psy573          104 GTRESTDAVLRVLV  117 (216)
Q Consensus       104 ~~~~~~~~~l~v~~  117 (216)
                      |.. ...+.|.|..
T Consensus        81 G~~-~~~~~l~V~~   93 (97)
T d1koaa1          81 GTK-EEIVFLNVTR   93 (97)
T ss_dssp             EEE-EEEECCEEEC
T ss_pred             CEE-EEEEEEEEee
Confidence            764 4455666654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.3e-16  Score=93.64  Aligned_cols=80  Identities=26%  Similarity=0.549  Sum_probs=69.4

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      +.|...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+.....+++|.|.+++..|+|.|+|.+.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            356677888999999999999998 7889999999999999877766667777777899999999999999999998654


Q ss_pred             C
Q psy573          105 T  105 (216)
Q Consensus       105 ~  105 (216)
                      .
T Consensus        81 ~   81 (92)
T d1epfa2          81 G   81 (92)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.8e-16  Score=90.16  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             CCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          125 PKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      +....+..|+++.|.|.+. +.|.+.+.|++.+..+.. .......+.|.|.++..+|+|.|+|.+.|..|....++.|.
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~   88 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   88 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEE
Confidence            3446788999999999884 788999999998876532 22233457799999999999999999999999999998887


Q ss_pred             E
Q psy573          204 V  204 (216)
Q Consensus       204 v  204 (216)
                      |
T Consensus        89 V   89 (90)
T d1gsma1          89 V   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-16  Score=92.59  Aligned_cols=86  Identities=26%  Similarity=0.452  Sum_probs=68.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      .|.++.+.+|+++.|.|.+ .+.|.+.+.|++++..+............+   ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             cCeeEEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            4667899999999999998 788999999999999885433323333332   369999999999999999999988875


Q ss_pred             ccceeEEEEe
Q psy573          107 ESTDAVLRVL  116 (216)
Q Consensus       107 ~~~~~~l~v~  116 (216)
                      .+..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5666777764

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=92.61  Aligned_cols=86  Identities=22%  Similarity=0.370  Sum_probs=68.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      +++++....+.+|++++|.|.+..+.+..++.||++|..+....       ....|.|.+++.+|+|.|.|.+.+..+..
T Consensus         3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2           3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------ENHNISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence            34556667789999999999884445667999999999874321       24579999999999999999999977766


Q ss_pred             ccceeEEEEeecc
Q psy573          107 ESTDAVLRVLVKP  119 (216)
Q Consensus       107 ~~~~~~l~v~~~p  119 (216)
                      .+..+.|.|..+|
T Consensus        76 ~S~~v~i~V~~~P   88 (89)
T d1f2qa2          76 ESEPLNITVIKAP   88 (89)
T ss_dssp             ECCCEEEEEECSC
T ss_pred             EeeeEEEEEEeCC
Confidence            6777888888776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=6.8e-16  Score=90.49  Aligned_cols=86  Identities=23%  Similarity=0.343  Sum_probs=70.4

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      .+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ......++.|.|.++...|+|.|+|.+.|..+..
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~   82 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE   82 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE
Confidence            4556678889999999999999999999999999999876432   3344456789999999999999999999988876


Q ss_pred             EEEEEEEEE
Q psy573          197 SASATLTVQ  205 (216)
Q Consensus       197 ~~~~~l~v~  205 (216)
                      .....+.|.
T Consensus        83 ~~~~~i~Vi   91 (92)
T d1epfa2          83 INFKDIQVI   91 (92)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666666553

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.9e-16  Score=91.59  Aligned_cols=88  Identities=22%  Similarity=0.392  Sum_probs=69.6

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES  108 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  108 (216)
                      +.+.+..+.+|+.++|.|.+ .+ +.+.+.|++++..+...... .....++.|.|.++..+|+|.|+|.+.|..+...+
T Consensus         8 i~~~~~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~~~~-~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2           8 LQVTNTTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLTERM-TLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             EECSCSEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCCTTE-EEETTTTEEEECSCCGGGCEEEEEEEESSSCCEEC
T ss_pred             EEcCceEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeecccccce-eccCCceEEEEeccchhhceEEEEEEEeCCCCeEE
Confidence            34566789999999999987 44 56799999999988443322 22334568999999999999999999998887666


Q ss_pred             ceeEEEEeecc
Q psy573          109 TDAVLRVLVKP  119 (216)
Q Consensus       109 ~~~~l~v~~~p  119 (216)
                      ..+.|.|..+|
T Consensus        85 ~~~~L~V~~~P   95 (96)
T d1l6za2          85 NSIKLDIIFDP   95 (96)
T ss_dssp             CCCEEEECCSC
T ss_pred             EeEEEEEEcCC
Confidence            67889988776

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=2.8e-16  Score=91.55  Aligned_cols=86  Identities=24%  Similarity=0.577  Sum_probs=68.2

Q ss_pred             ccceEecccc-eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~-~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.|...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.   ..+.... +..|.|.++...|+|.|.|.+.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~---~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLS---GGRATVT-DSGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECC---SSSEEEE-TTEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCc---cccEEEe-eeeEEECCCChhhCEEEEEEEEEC
Confidence            4778777755 578899999999998 788999999999999883   2334443 457999999999999999999998


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .|.. ...+.|.|
T Consensus        77 ~G~~-~~~~~l~V   88 (89)
T d1biha4          77 HGDK-YFETLVQV   88 (89)
T ss_dssp             TEEE-EEEEEEEE
T ss_pred             CCEE-EEEEEEEE
Confidence            8764 33445544

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=3.8e-16  Score=92.56  Aligned_cols=85  Identities=25%  Similarity=0.376  Sum_probs=68.3

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      .+++..+.+|+++.|.|.+ .+.|.+.+.||+++..+......++...   ...+|.|.+++.+|+|.|+|.+.|..|..
T Consensus         9 ~~~~~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   87 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP   87 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             CCCCEEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcE
Confidence            3567899999999999998 7889999999999998865444433322   23589999999999999999999988876


Q ss_pred             ccceeEEEE
Q psy573          107 ESTDAVLRV  115 (216)
Q Consensus       107 ~~~~~~l~v  115 (216)
                      .+.++.|.|
T Consensus        88 ~s~s~~L~V   96 (97)
T d1biha3          88 QKHSLKLTV   96 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            555666665

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.5e-16  Score=90.09  Aligned_cols=82  Identities=26%  Similarity=0.427  Sum_probs=66.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.|...|.+..+.+|+++.|.|.+ .+.|.| ++.||+++..+....        ...+.|.....+|+|.|+|.+.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~--------~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPA--------PSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSE--------ESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCC--------CcceEEecCCccccEEEEEEEEcCC
Confidence            678889999999999999999998 788887 899999999884322        1235566667789999999999998


Q ss_pred             CCcccceeEEEE
Q psy573          104 GTRESTDAVLRV  115 (216)
Q Consensus       104 ~~~~~~~~~l~v  115 (216)
                      |...+..+.|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            876566666665

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=1.6e-16  Score=93.56  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=72.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.|...+.+..+.+|+++.|.|.+ .+.|.+.+.|++++..+............ ...|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            4777777888999999999999999 88999999999999887554444443333 347999999999999999999998


Q ss_pred             CCCcccceeEEEE
Q psy573          103 AGTRESTDAVLRV  115 (216)
Q Consensus       103 ~~~~~~~~~~l~v  115 (216)
                      .|.. ...+.|.|
T Consensus        81 ~G~~-~~~~~l~V   92 (93)
T d1wiua_          81 LGED-EAIFEVIV   92 (93)
T ss_dssp             TEEE-EEEEEEEE
T ss_pred             CCEE-EEEEEEEE
Confidence            8865 44555554

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.65  E-value=1.1e-16  Score=93.85  Aligned_cols=88  Identities=24%  Similarity=0.535  Sum_probs=69.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      |...|.++.+.+|+++.|.|.+ .+.|.+.+.|++++..+........... ..+.|.|.++..+|+|.|.|.+.|..|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEEC-CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEE-EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            4456778899999999999998 7889999999999988754444333333 3457999999999999999999998887


Q ss_pred             cccceeEEEEe
Q psy573          106 RESTDAVLRVL  116 (216)
Q Consensus       106 ~~~~~~~l~v~  116 (216)
                      . ...+.|.|.
T Consensus        81 ~-~~~~~l~V~   90 (91)
T d1tnna_          81 Q-EAEFTLTIQ   90 (91)
T ss_dssp             C-CEEEEEECC
T ss_pred             E-EEEEEEEEE
Confidence            5 445566553

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=5.5e-16  Score=91.86  Aligned_cols=77  Identities=29%  Similarity=0.539  Sum_probs=65.2

Q ss_pred             eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC----ee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~----~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+....    .. .....+|.|.++..+|+|.|+|.+.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            367789999999999999999999999998875321    11 1234689999999999999999999999999988888


Q ss_pred             EE
Q psy573          203 TV  204 (216)
Q Consensus       203 ~v  204 (216)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.65  E-value=1.1e-15  Score=90.51  Aligned_cols=81  Identities=27%  Similarity=0.429  Sum_probs=66.2

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eee-----ecCCeEEEecCCCCCCeEEEEEEEcCCcce-E
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSV-----LPSRSLQLSDVRLEDGGEYVCEAENAVGKI-S  197 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~-----~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~  197 (216)
                      +.+..+..|+++.|.|.+.+.|.+.+.|++++..+.... ...     .....|.|.+++.+|+|.|+|.+.|..|.. +
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            467889999999999999999999999999999875431 111     133579999999999999999999999974 5


Q ss_pred             EEEEEEEE
Q psy573          198 ASATLTVQ  205 (216)
Q Consensus       198 ~~~~l~v~  205 (216)
                      .++.|.|.
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            57778763

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=1.6e-16  Score=94.25  Aligned_cols=89  Identities=34%  Similarity=0.571  Sum_probs=73.9

Q ss_pred             ccceEecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.|...|.+..+.+|   +.+.|.|.+ .+.|.+.+.|++++..+............+..|.|..+..+|+|.|.|.+.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            5788888988888776   789999998 788999999999999987666666666667778889899999999999999


Q ss_pred             cCCCCcccceeEE
Q psy573          101 NVAGTRESTDAVL  113 (216)
Q Consensus       101 ~~~~~~~~~~~~l  113 (216)
                      |..|...+..+.|
T Consensus        83 N~~G~~~S~~a~L   95 (97)
T d1cs6a1          83 NARGTVVSREASL   95 (97)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9988755555554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.6e-17  Score=92.76  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         +.+..++.+|+|.|.|.|.|..|..+..+.|.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~---------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~   80 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------GESVTVTRDLEGTYLCRARSTQGEVTREVTVN   80 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee---------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence            356678889999999999999999999999998764322         22456788999999999999999999999998


Q ss_pred             EEec
Q psy573          204 VQSK  207 (216)
Q Consensus       204 v~~~  207 (216)
                      |.++
T Consensus        81 V~~P   84 (84)
T d2oz4a3          81 VLSP   84 (84)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-15  Score=91.64  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=71.3

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCccC----CCCCeeee---------cCCeEEEecCCCCCCeEE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSAM----PEDRMSVL---------PSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~----~~~~~~~~---------~~~~l~i~~~~~~d~g~y  185 (216)
                      ...|.+..+.+|+++.|.|.+.+.|   .|.+.|+|++...    ...+....         ....|.|.++..+|+|.|
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            3456778999999999999999887   5799999986432    11122111         113599999999999999


Q ss_pred             EEEEEcCCcceEEEEEEEEEecceeee
Q psy573          186 VCEAENAVGKISASATLTVQSKYLKVI  212 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l~v~~~p~~~~  212 (216)
                      +|.|.|..|..+..+.|.|.+++....
T Consensus        84 ~C~a~N~~G~~~~~~~L~V~~~~~~~p  110 (113)
T d2dava1          84 RCEVTYKDKFDSCSFDLEVHESTGTTP  110 (113)
T ss_dssp             EEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence            999999999999999999987765544

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.2e-16  Score=90.60  Aligned_cols=81  Identities=30%  Similarity=0.447  Sum_probs=66.2

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-ee--c---CCeEEEecCCCCCCeEEEEEEEcCCcc-eE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VL--P---SRSLQLSDVRLEDGGEYVCEAENAVGK-IS  197 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~--~---~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~  197 (216)
                      |.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+...... ..  .   ...|.|.+++.+|.|.|+|.|.|..|. .+
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            45678899999999999999999999999999987654321 11  1   246999999999999999999999997 45


Q ss_pred             EEEEEEEE
Q psy573          198 ASATLTVQ  205 (216)
Q Consensus       198 ~~~~l~v~  205 (216)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777775

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-15  Score=90.10  Aligned_cols=88  Identities=22%  Similarity=0.297  Sum_probs=70.1

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCccCCC----CCeeee---------cCCeEEEecCCCCCCe
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSAMPE----DRMSVL---------PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~~~----~~~~~~---------~~~~l~i~~~~~~d~g  183 (216)
                      .+...|....+..|+++.|.|.+.+.|   .|.+.|++++.....    .+....         ....|.|.+++.+|+|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            455667888999999999999999888   578999998754321    111111         1146999999999999


Q ss_pred             EEEEEEEcCCcceEEEEEEEEEec
Q psy573          184 EYVCEAENAVGKISASATLTVQSK  207 (216)
Q Consensus       184 ~y~C~~~n~~~~~~~~~~l~v~~~  207 (216)
                      .|+|.+.|..|..+.++.|.|.+.
T Consensus        86 ~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          86 GYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEEEECCCeEEEEEEEEEEec
Confidence            999999999999999999999853

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7e-17  Score=94.86  Aligned_cols=87  Identities=25%  Similarity=0.387  Sum_probs=70.9

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe--eeecCCeEEEecCCCCCCe-EEEEEEEcCCc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM--SVLPSRSLQLSDVRLEDGG-EYVCEAENAVG  194 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~~  194 (216)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .......|.|.++..+|.| .|+|.|.|..|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            46677777788899999999999999999999999999876643211  1123357999999999998 79999999999


Q ss_pred             ceEEEEEEEE
Q psy573          195 KISASATLTV  204 (216)
Q Consensus       195 ~~~~~~~l~v  204 (216)
                      ....++.|.|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            9888877655

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.6e-15  Score=88.94  Aligned_cols=88  Identities=20%  Similarity=0.523  Sum_probs=64.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeC-CEEeccccCceEEE--e--cCcEEEEcccCCCCCceEEEEEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKN-GHPIDFENSKRLRL--V--DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~-~~~~~~~~~~~~~~--~--~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +.+.|....+..|+++.|.|.+ .+.| .+.+.|+++ +..+... ..++..  .  ..+.|.|.+++.+|+|.|+|.+.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v-~g~p~~~~v~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   80 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT   80 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCB-SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEE-EeccCCCEEEEEEeeeeeeeec-cccEEEEeecCcceEEEcccCchhhceEEEEEEE
Confidence            4556777889999999999998 6666 479999994 4544332 222222  1  23579999999999999999999


Q ss_pred             cCCCCcccceeEEEEe
Q psy573          101 NVAGTRESTDAVLRVL  116 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~  116 (216)
                      |..|.....++.|.|.
T Consensus        81 N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          81 AEDGTQSEATVNVKIF   96 (97)
T ss_dssp             ETTTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEEE
Confidence            9887654555666653

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=9.4e-16  Score=89.72  Aligned_cols=86  Identities=23%  Similarity=0.444  Sum_probs=66.8

Q ss_pred             ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+... |....+.+|+.++|.|.+ .+.|.+.+.|++++......     ....++.|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSK-----WLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCC-----CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEE-EEccCCEEEEEecccccceE-----eeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            4666654 678899999999999998 78899999999976543211     1234568999999999999999999998


Q ss_pred             CCCcccceeEEEEe
Q psy573          103 AGTRESTDAVLRVL  116 (216)
Q Consensus       103 ~~~~~~~~~~l~v~  116 (216)
                      .|.. ...+.|.|.
T Consensus        78 ~G~~-~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRD-TYQGRIIIH   90 (91)
T ss_dssp             TEEE-EEEEEEEEE
T ss_pred             CCEE-EEEEEEEEE
Confidence            8865 445566553

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=1.2e-15  Score=89.88  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=66.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCC--eee-ecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDR--MSV-LPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~--~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      .|.+...+.+..+.+|+.+.|.|.+.+.|.| .+.|++++..+....  ... ...++|.|.++..+|.|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            4667777788899999999999999999866 799999998876432  222 245789999999999999999999999


Q ss_pred             cceE
Q psy573          194 GKIS  197 (216)
Q Consensus       194 ~~~~  197 (216)
                      |...
T Consensus        82 G~~~   85 (94)
T d1biha1          82 GVAS   85 (94)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9743

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=91.12  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             eCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee--------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          131 SAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ..++...+.|.+.|.|.|++.|++++..+.... ....        ....|.|.+++.+|.|.|+|.|.|..|..+..+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            356778899999999999999999999886542 2111        1146999999999999999999999999999999


Q ss_pred             EEEEeccee
Q psy573          202 LTVQSKYLK  210 (216)
Q Consensus       202 l~v~~~p~~  210 (216)
                      |.|.+.|.+
T Consensus        94 v~V~~~P~i  102 (103)
T d1wwbx_          94 AHFMGWPGI  102 (103)
T ss_dssp             ECCSCCCCC
T ss_pred             EEEEeCCCC
Confidence            999888753

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=87.59  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=61.4

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      +..+.+|++++|.|.+ .+.|.|.+.|++++..+         ...+..|.|.++..+|+|.|.|.+.|..|.. ...+.
T Consensus         8 ~~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~~---------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~   76 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKID   76 (84)
T ss_dssp             SSCEETTCCEEEEEEC-CTTCCCEEEEECTTCCE---------EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             CeEEECCCeEEEEEEe-EcCCchheEEEeecccc---------eeeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEE
Confidence            3468899999999998 88999999999976654         2335679999999999999999999987765 44566


Q ss_pred             EEEeecc
Q psy573          113 LRVLVKP  119 (216)
Q Consensus       113 l~v~~~p  119 (216)
                      |.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            6666544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=88.55  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA  111 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  111 (216)
                      ....+.+|+++.|.|.+..+.|.+.+.|++.+..+    .........+.|.|.+++.+|+|.|.|.+.|..+.. ..++
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~-~~s~   85 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSL----GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTV   85 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT----CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee----eeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcE-EEEE
Confidence            34778899999999987457788999999876654    122223345679999999999999999999977653 4455


Q ss_pred             EEEE
Q psy573          112 VLRV  115 (216)
Q Consensus       112 ~l~v  115 (216)
                      .|.|
T Consensus        86 ~l~V   89 (90)
T d1gsma1          86 QLLV   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.7e-15  Score=88.33  Aligned_cols=85  Identities=26%  Similarity=0.354  Sum_probs=65.0

Q ss_pred             ceEe-cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           26 EFRV-QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        26 ~~~~-~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .+.+ .|....+.+|+++.|.|.+..+.|.+.+.|++++..+...   +. ...++.|+|.++..+|+|.|.|.+.|..|
T Consensus         3 ~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RA-MDFNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             EEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---TE-EEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---cc-EeeceEEEEecCCcccCEEEEEEEEECCC
Confidence            3444 3556789999999999998446788899999988766322   12 23467899999999999999999999888


Q ss_pred             CcccceeEEEE
Q psy573          105 TRESTDAVLRV  115 (216)
Q Consensus       105 ~~~~~~~~l~v  115 (216)
                      .. ...+.|.|
T Consensus        79 ~~-~~~~~l~V   88 (89)
T d1gl4b_          79 MD-QGTATLHV   88 (89)
T ss_dssp             EE-EEEEEEEE
T ss_pred             EE-EEEEEEEE
Confidence            65 44556655

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=89.49  Aligned_cols=89  Identities=19%  Similarity=0.340  Sum_probs=69.4

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCC-------CCCeeee---cCCeEEEecCC-CCCCeE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMP-------EDRMSVL---PSRSLQLSDVR-LEDGGE  184 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~-------~~~~~~~---~~~~l~i~~~~-~~d~g~  184 (216)
                      +||.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++....       ..++...   ....|.|.++. .+|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            36777777788889999999999999999877 699999764332       1122222   22469999998 479999


Q ss_pred             EEEEEEcCCcceEEEEEEEEE
Q psy573          185 YVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       185 y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      |.|.|.|..|..+..+.|.|+
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999888874

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.61  E-value=4.3e-15  Score=90.00  Aligned_cols=87  Identities=31%  Similarity=0.468  Sum_probs=66.5

Q ss_pred             cceEEe-CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC----C---Ceee----------ecCCeEEEecCCC
Q psy573          118 KPYIIR-GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE----D---RMSV----------LPSRSLQLSDVRL  179 (216)
Q Consensus       118 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~----~---~~~~----------~~~~~l~i~~~~~  179 (216)
                      .|.+.. .|.+..+..|+++.|.|.+.+.|.|.+.|++++.....    .   ....          .....|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            355543 36788999999999999999999999999987643211    0   0000          0125699999999


Q ss_pred             CCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          180 EDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       180 ~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      +|.|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999998877

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=91.23  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eee--e-----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573          132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSV--L-----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT  203 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~--~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .+....|.|.+.|.|.|++.|++++..+.... ...  .     ....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            34556788999999999999999999876442 211  1     124599999999999999999999999999999999


Q ss_pred             EEeccee
Q psy573          204 VQSKYLK  210 (216)
Q Consensus       204 v~~~p~~  210 (216)
                      |.++|.+
T Consensus        96 V~~~P~P  102 (105)
T d1wwca_          96 FLKEPFP  102 (105)
T ss_dssp             CSCCCCC
T ss_pred             EEeCCCC
Confidence            9887754

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.4e-16  Score=89.94  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +|.+...+..+.+.+|+.+.|.|.+ .+.+ .+++.|+|++..+.  ...+.....+..|.|.+++.+|+|.|+|.+.+.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~-~g~~~~~~i~W~k~~~~l~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPG-VEPEDNATVHWVLRKPAAG--SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTT-SCTTCCSEEEEEEECSSSS--CCCEEEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEe-ecCCCCceEEEEEcccccc--ceeeEEecCCCEEEECCCChhcCEEEEEEECCc
Confidence            4677777888899999999999998 5544 56899999988773  334455556778999999999999999998754


Q ss_pred             C
Q psy573          103 A  103 (216)
Q Consensus       103 ~  103 (216)
                      .
T Consensus        83 ~   83 (93)
T d1n26a1          83 P   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.7e-15  Score=90.34  Aligned_cols=91  Identities=29%  Similarity=0.610  Sum_probs=68.1

Q ss_pred             ccceEecccc--eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC--ceEEE-ecCcEEEEcccCCCCCceEEEE
Q psy573           24 REEFRVQPKS--QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRL-VDGTNLAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        24 ~~~~~~~~~~--~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~d~g~y~C~   98 (216)
                      ||.+...+..  ..+..|+++.|.|.+ .+.|.+.+.|++++..+.....  ..... ...+.|.|.+++.+|+|.|.|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEE-EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            5666665554  355679999999998 7889999999999998853322  12222 2356899999999999999999


Q ss_pred             EEcCCCCcccceeEEEEe
Q psy573           99 VKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        99 ~~~~~~~~~~~~~~l~v~  116 (216)
                      +.|..|.. ...+.|.|.
T Consensus        82 a~N~~G~~-~~~~~l~V~   98 (100)
T d1qz1a3          82 AENKAGEQ-DASIHLKVF   98 (100)
T ss_dssp             EEETTEEE-EEEEEEEEE
T ss_pred             EEECCCEE-EEEEEEEEE
Confidence            99988765 445666664

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-15  Score=86.79  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             ecccc-eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           29 VQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        29 ~~~~~-~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      +.|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++....  ..........+.|.|.++..+|+|.|.|.+.|..|.. 
T Consensus         5 i~P~~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-   80 (90)
T d1vcaa2           5 TTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-   80 (90)
T ss_dssp             EESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-
T ss_pred             EECCCcEEEECCCEEEEEEec-cCCCCceEEEEecCccce--eeeeeeecCCcEEEEecccccccceEEEEEEeCCCEE-
Confidence            34443 456789999999999 789999999999876542  2222223344679999999999999999999988764 


Q ss_pred             cceeEEEEe
Q psy573          108 STDAVLRVL  116 (216)
Q Consensus       108 ~~~~~l~v~  116 (216)
                      ...+.|.|.
T Consensus        81 ~~~~~v~V~   89 (90)
T d1vcaa2          81 EKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            455666654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-15  Score=86.36  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             CceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLT  203 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~  203 (216)
                      ....+.+|+.+.|.|.+.+. +...+.|+|++..+...    .....|.|.+++.+|+|.|.|.+.|..+. .+..+.|.
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~   83 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT   83 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc----cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEE
Confidence            44568899999999999665 55689999999877532    13467999999999999999999998877 45678899


Q ss_pred             EEecc
Q psy573          204 VQSKY  208 (216)
Q Consensus       204 v~~~p  208 (216)
                      |.++|
T Consensus        84 V~~~P   88 (89)
T d1f2qa2          84 VIKAP   88 (89)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            98877

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-15  Score=93.60  Aligned_cols=82  Identities=23%  Similarity=0.369  Sum_probs=65.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC------------------------------eeee---cCCe
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR------------------------------MSVL---PSRS  171 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~------------------------------~~~~---~~~~  171 (216)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+....                              ....   ....
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            456688899999999999999999999999765442110                              0000   1135


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573          172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS  206 (216)
Q Consensus       172 l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~  206 (216)
                      |.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            99999999999999999999999999999988753

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=4.5e-15  Score=87.69  Aligned_cols=82  Identities=23%  Similarity=0.360  Sum_probs=66.9

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATL  202 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l  202 (216)
                      .+..+.+|+.+.|.|.+.+ +.+.+.|++++..+.... .... ..++|.|.++..+|.|.|+|.|.|..|.. +..+.|
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L   89 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL   89 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence            4567889999999999865 567999999999886543 3222 44689999999999999999999999875 457888


Q ss_pred             EEEecc
Q psy573          203 TVQSKY  208 (216)
Q Consensus       203 ~v~~~p  208 (216)
                      .|..+|
T Consensus        90 ~V~~~P   95 (96)
T d1l6za2          90 DIIFDP   95 (96)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            888776

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.58  E-value=6.6e-15  Score=85.30  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=62.2

Q ss_pred             CceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLT  203 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~  203 (216)
                      ....+.+|+.+.|.|.+.+ .|.+.+.|+|++..+..    ......|.|.++..+|+|.|.|.+.|..|.. +..+.|.
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            3456889999999999964 46678999999976531    1245679999999999999999999998874 4677888


Q ss_pred             EEec
Q psy573          204 VQSK  207 (216)
Q Consensus       204 v~~~  207 (216)
                      |+++
T Consensus        84 V~~P   87 (88)
T d2fcba2          84 VQAP   87 (88)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=2.5e-15  Score=88.98  Aligned_cols=86  Identities=26%  Similarity=0.461  Sum_probs=66.9

Q ss_pred             ecceEEeCCCceeEeCC---CcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAG---SIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+...|.+..+..|   +.+.|.|.+.|.|.|.+.|++++..+...   ......+..|.|..+..+|.|.|+|.|.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            35667777777776665   78999999999999999999999887532   2333345667888888999999999999


Q ss_pred             cCCcce-EEEEEE
Q psy573          191 NAVGKI-SASATL  202 (216)
Q Consensus       191 n~~~~~-~~~~~l  202 (216)
                      |..|.. ++.+.|
T Consensus        83 N~~G~~~S~~a~L   95 (97)
T d1cs6a1          83 NARGTVVSREASL   95 (97)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            999974 345554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.4e-14  Score=85.71  Aligned_cols=84  Identities=25%  Similarity=0.458  Sum_probs=63.2

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCC-ccCCC--CCeeee----cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLG-SAMPE--DRMSVL----PSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~-~~~~~--~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ...|....+..|+.+.|.|.+.+.|+ +.+.|++++ ..+..  .+....    ...+|.|.++..+|+|.|+|.+.|..
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            34456778899999999999999875 799999854 33322  222222    22579999999999999999999999


Q ss_pred             cc-eEEEEEEEEE
Q psy573          194 GK-ISASATLTVQ  205 (216)
Q Consensus       194 ~~-~~~~~~l~v~  205 (216)
                      |. .+.++.|.|.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            97 4456777664

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.57  E-value=3.5e-15  Score=88.31  Aligned_cols=81  Identities=30%  Similarity=0.464  Sum_probs=63.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc-e-EEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-R-LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...... . ......++|.|.++..+|+|.|+|.+.|..|.. ...
T Consensus        14 ~~~v~~G~~v~l~C~~-~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~   91 (97)
T d3dara1          14 LHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHT   91 (97)
T ss_dssp             EEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             cEEECCCCcEEEEEEE-eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEE
Confidence            3567899999999998 78899999999999988543322 1 222345689999999999999999999988764 445


Q ss_pred             eEEEE
Q psy573          111 AVLRV  115 (216)
Q Consensus       111 ~~l~v  115 (216)
                      +.|.|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66655

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=84.42  Aligned_cols=77  Identities=16%  Similarity=0.279  Sum_probs=61.5

Q ss_pred             CceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEE
Q psy573          126 KDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLT  203 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~  203 (216)
                      ....+.+|+++.|.|.+. +.|.+.+.|++++..+..    ......|.|.++..+|+|.|+|.+.|..+.. +..+.|.
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~it   85 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNIT   85 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce----eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEE
Confidence            345688999999999986 456678999999876532    2245679999999999999999999998874 4577888


Q ss_pred             EEe
Q psy573          204 VQS  206 (216)
Q Consensus       204 v~~  206 (216)
                      |++
T Consensus        86 V~E   88 (89)
T d1fnla2          86 ITQ   88 (89)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.9e-14  Score=85.95  Aligned_cols=87  Identities=20%  Similarity=0.362  Sum_probs=66.2

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC------------CCeeeecCCeEEEecCCCCCCeEEE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE------------DRMSVLPSRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d~g~y~  186 (216)
                      |.+...+....+.+|+++.|.|.+.+.|.|.+.|++++.....            ........++|.|.++..+|+|.|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            3455566677899999999999999999999999986543211            1111223467999999999999999


Q ss_pred             EEEEcCCcceEEEEEEEEE
Q psy573          187 CEAENAVGKISASATLTVQ  205 (216)
Q Consensus       187 C~~~n~~~~~~~~~~l~v~  205 (216)
                      |.+.|..|.....+.+.|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999987666555553

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-14  Score=84.83  Aligned_cols=90  Identities=22%  Similarity=0.388  Sum_probs=65.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEe----ccccCceEEEe---cCcEEEEcccC-CCCCce
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPI----DFENSKRLRLV---DGTNLAIQDSR-KTDDGR   94 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~----~~~~~~~~~~~---~~~~l~i~~~~-~~d~g~   94 (216)
                      ||.+...+.+..+.+|+.+.|.|.+ .+.|.+ .+.||+++...    ......++...   ....|.|.++. .+|+|.
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v-~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEE-EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            6788888888999999999999999 677766 79999865322    11222233322   22479999998 579999


Q ss_pred             EEEEEEcCCCCcccceeEEEE
Q psy573           95 YQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        95 y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      |.|.+.|..|.. ...+.|.|
T Consensus        81 Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEECCCEE-EEEEEEEE
Confidence            999999988765 44556655

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.3e-15  Score=86.14  Aligned_cols=77  Identities=23%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCCCee-eecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ..|.+...+....+.+|+.+.|.|.+.+.|. ++|.|+|++..+...+.. ...+.+|.|.+++.+|+|.|+|.+.|..
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            3466666677778889999999999988765 589999999888655433 3456789999999999999999997754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.3e-15  Score=88.34  Aligned_cols=86  Identities=14%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------------CeeeecCCeEEEecCCCCCCeEEEE
Q psy573          120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------------RMSVLPSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------------~~~~~~~~~l~i~~~~~~d~g~y~C  187 (216)
                      .+...+....+.+|+++.|.|.+.+.|.|.+.|++++..+...            .......++|.|.++..+|.|.|.|
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence            3444556678899999999999999999999999976543211            1111234679999999999999999


Q ss_pred             EEEcCCcceEEEEEEEEE
Q psy573          188 EAENAVGKISASATLTVQ  205 (216)
Q Consensus       188 ~~~n~~~~~~~~~~l~v~  205 (216)
                      .+.|..|.....+.|.+.
T Consensus        86 ~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          86 MVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEETTSSCEECCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            999999997776665543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.7e-15  Score=89.40  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCc-eEEE-ecC----cEEEEcccCCCCCceEEEEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSK-RLRL-VDG----TNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~~-~~~----~~l~i~~~~~~d~g~y~C~~   99 (216)
                      +...+....+.+|+++.|.|.+ .+.| .|.+.|++++..+...... .... ..+    ..|.|.++..+|+|.|+|.+
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v-~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPV-KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEE-ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEE-EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            4455667889999999999999 6767 5899999987655322221 1111 111    25999999999999999999


Q ss_pred             EcCCCCcccceeEEEEe
Q psy573          100 KNVAGTRESTDAVLRVL  116 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v~  116 (216)
                      .|..|...+.++.|.|.
T Consensus        85 ~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EETTEEEECCCEEEEEE
T ss_pred             EcCCCeEEEEEEEEEEE
Confidence            99887654555666654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3e-14  Score=86.31  Aligned_cols=84  Identities=24%  Similarity=0.439  Sum_probs=61.0

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC--------ceEEE-ecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--------KRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ...+.+|+.+.|.|.+..+.|.+.+.|++++..+.....        ..... ...+.|.|.+++.+|+|.|+|.+.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            346889999999999855789999999999887632211        11111 123479999999999999999999988


Q ss_pred             CCcc-cceeEEEEe
Q psy573          104 GTRE-STDAVLRVL  116 (216)
Q Consensus       104 ~~~~-~~~~~l~v~  116 (216)
                      |... +..+.+.|.
T Consensus        91 G~~~~s~~v~l~V~  104 (110)
T d1f97a2          91 GTAMRSEAAHMDAV  104 (110)
T ss_dssp             SCCEECCCEEEEEE
T ss_pred             CcEEEEEEEEEEEE
Confidence            7653 344555554

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-14  Score=86.01  Aligned_cols=84  Identities=27%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCC----CCeeeecC-----CeEEEecCCCCCCeEEEEEEEcC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPE----DRMSVLPS-----RSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~----~~~~~~~~-----~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ..+....+..|+++.|.|.+.+.| .|.+.|+|++..+..    ........     ..|.|.++..+|.|.|.|.|.|.
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            344556889999999999999998 589999998876521    11111111     24999999999999999999999


Q ss_pred             Ccce-EEEEEEEEEe
Q psy573          193 VGKI-SASATLTVQS  206 (216)
Q Consensus       193 ~~~~-~~~~~l~v~~  206 (216)
                      .|.. +.++.|.|.+
T Consensus        88 ~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          88 SNLIESHSTTLYVTD  102 (104)
T ss_dssp             TEEEECCCEEEEEEC
T ss_pred             CCeEEEEEEEEEEEE
Confidence            9974 4567777764

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-14  Score=88.10  Aligned_cols=79  Identities=27%  Similarity=0.437  Sum_probs=59.9

Q ss_pred             eeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCe-----------ee-ecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          128 TTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRM-----------SV-LPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~-----------~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.....           .. .....|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            467899999999998 4789999999999876532211           11 1235799999999999999999999999


Q ss_pred             ceEE--EEEEEEEe
Q psy573          195 KISA--SATLTVQS  206 (216)
Q Consensus       195 ~~~~--~~~l~v~~  206 (216)
                      +..+  .+.|.|.+
T Consensus        92 ~~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 TAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEECCCEEEEEES
T ss_pred             cEEEEEEEEEEEEe
Confidence            8655  45555543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=83.57  Aligned_cols=77  Identities=17%  Similarity=0.348  Sum_probs=61.9

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV  204 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v  204 (216)
                      ...+.+|+++.|.|.+.+ +.|.+.|++++..+...  +.....++.|.|.++..+|+|.|+|.+.|..+.......|.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            357889999999999987 67899999999887543  333446678999999999999999999999887665544433

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=87.09  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee-e--c--------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-L--P--------SRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~--~--------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ++...+.|.+.|.|.|.+.|++++..+....... .  .        ...|.|.++..+|.|.|+|.+.|..|....++.
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~   94 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEE
Confidence            3444566689999999999999999876443211 1  1        135999999999999999999999999999999


Q ss_pred             EEEEecce
Q psy573          202 LTVQSKYL  209 (216)
Q Consensus       202 l~v~~~p~  209 (216)
                      |.|..+|.
T Consensus        95 v~v~~~P~  102 (107)
T d1he7a_          95 AAFMDNPF  102 (107)
T ss_dssp             ECCCSCTT
T ss_pred             EEEEcCCC
Confidence            99998883

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.7e-15  Score=89.51  Aligned_cols=87  Identities=25%  Similarity=0.387  Sum_probs=64.8

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCee-----------eecCCeEEEecCCCCCCeEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMS-----------VLPSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~g~y  185 (216)
                      +|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+......           ....+.|.|.++..+|.|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            3433334445578899999999998 57899999999998876432111           11235799999999999999


Q ss_pred             EEEEEcCCcceEEEEEEEE
Q psy573          186 VCEAENAVGKISASATLTV  204 (216)
Q Consensus       186 ~C~~~n~~~~~~~~~~l~v  204 (216)
                      +|.+.|..|....+..+.+
T Consensus        82 ~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEECSSSCCEECCCBCC
T ss_pred             EEEEEECCCceEEEEEEEE
Confidence            9999999998766554443

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=86.76  Aligned_cols=91  Identities=21%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEEecc-ccCceEEEe---------cCcEEEEcccCCCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDF-ENSKRLRLV---------DGTNLAIQDSRKTD   91 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~-~~~~~~~~~---------~~~~l~i~~~~~~d   91 (216)
                      +.|...|.+..+.+|++++|.|.+ .+.|   .+.+.|++++..... ....++...         ....|.|.+++.+|
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEE-ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CEeEECCCeEEEECCCCEEEEEee-cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            457778888999999999999998 6666   578999998754321 111222111         11369999999999


Q ss_pred             CceEEEEEEcCCCCcccceeEEEEee
Q psy573           92 DGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        92 ~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      +|.|+|.+.|..|.. ...+.|.|..
T Consensus        84 ~G~Y~C~a~N~~G~~-~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFD-CSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEES
T ss_pred             CcEEEEEEEECCCeE-EEEEEEEEEe
Confidence            999999999988876 5567777654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.4e-14  Score=82.24  Aligned_cols=71  Identities=24%  Similarity=0.361  Sum_probs=57.1

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEEc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ..+.+..+.+|+.+.|.|.+  +.|.+.+.||+++..+......++....   ...|.|.++..+|+|.|+|.+.+
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC--SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             cCCCCEEEeCCCcEEEEEEE--CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            45667899999999999998  4577899999999988655544444332   23799999999999999999866

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=87.96  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=66.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEEecc-ccCceEEEe----c-----CcEEEEcccCCCCCc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDF-ENSKRLRLV----D-----GTNLAIQDSRKTDDG   93 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~-~~~~~~~~~----~-----~~~l~i~~~~~~d~g   93 (216)
                      |...|.++.+.+|++++|.|.+ .+.|   .|.+.|++++..... ....++...    .     ...|.|.+++.+|+|
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EeECCceEEEeCCCEEEEEEEE-ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            4567888999999999999998 6666   579999998653311 111111111    1     135999999999999


Q ss_pred             eEEEEEEcCCCCcccceeEEEEeecc
Q psy573           94 RYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        94 ~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      .|+|.+.|..|.. ...+.|.|..++
T Consensus        82 ~Y~C~a~N~~G~~-~~~~~L~V~~~~  106 (113)
T d2dava1          82 NYRCEVTYKDKFD-SCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEECSSCEE-EECCEEEEECCC
T ss_pred             EEEEEEEeCCCEE-EEEEEEEEEcCC
Confidence            9999999988875 556788876544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.2e-14  Score=87.23  Aligned_cols=80  Identities=21%  Similarity=0.367  Sum_probs=62.4

Q ss_pred             eEecc-cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceE-EEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573           27 FRVQP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL-RLVDGTNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        27 ~~~~~-~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |...+ ..+.+.+|+.+.|.|.+..+.|.+.+.|++++..+......+. ....+++|.|.+++.+|+|.|+|.+.|..+
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCC
Confidence            44444 4578999999999998756788899999999887644443433 334567899999999999999999998766


Q ss_pred             Cc
Q psy573          105 TR  106 (216)
Q Consensus       105 ~~  106 (216)
                      ..
T Consensus        86 ~~   87 (105)
T d1cs6a2          86 FI   87 (105)
T ss_dssp             TE
T ss_pred             CE
Confidence            53

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.7e-16  Score=90.07  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc-eEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~  103 (216)
                      |.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... .........|.|.++..+|.| .|+|.+.|..
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeeeee-eeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            677888888899999999999998 7899999999999876532111 111223357999999999999 6999999988


Q ss_pred             CCc
Q psy573          104 GTR  106 (216)
Q Consensus       104 ~~~  106 (216)
                      |..
T Consensus        81 G~~   83 (92)
T d2ifga1          81 GRA   83 (92)
T ss_dssp             EEC
T ss_pred             CEE
Confidence            765

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6e-14  Score=83.28  Aligned_cols=83  Identities=19%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             CCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCC----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          125 PKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPED----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      +......+|+.+.|.|.+. +.|.+++.|++++..+...    ......++.|.|.+++.+|+|.|+|.+.|..|....+
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            3445677899999999884 6789999999998755321    1223356789999999999999999999999999999


Q ss_pred             EEEEEEec
Q psy573          200 ATLTVQSK  207 (216)
Q Consensus       200 ~~l~v~~~  207 (216)
                      +.|.|...
T Consensus        89 ~~L~V~~~   96 (101)
T d1iray1          89 ISAKFVEN   96 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99999854

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.50  E-value=9.1e-14  Score=79.69  Aligned_cols=78  Identities=23%  Similarity=0.346  Sum_probs=59.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+.+.|....+.+|++++|.|.+ .+.+.+ .+.||+++..+.         ..+..|.|.+++.+|+|.|+|.+.+..
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLIS---------SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEE---------SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEe-ccCCCCeEEEEeeeceeee---------ecceeeEecCCcccCCEEEEEEccCCC
Confidence            456677888899999999999998 566655 567788887662         234579999999999999999987543


Q ss_pred             CCcccceeEEEE
Q psy573          104 GTRESTDAVLRV  115 (216)
Q Consensus       104 ~~~~~~~~~l~v  115 (216)
                      .   +..+.|.|
T Consensus        76 ~---S~~v~L~V   84 (84)
T d1fnla1          76 L---SDPVQLEV   84 (84)
T ss_dssp             C---CCCEEEEE
T ss_pred             c---cccEEEEC
Confidence            2   33445543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9e-14  Score=81.99  Aligned_cols=87  Identities=24%  Similarity=0.336  Sum_probs=61.8

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEE-ee--CCccCCCCCeee-ec---CCeEEEecCCCCCCeEEEEEEE
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-KR--LGSAMPEDRMSV-LP---SRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W-~~--~~~~~~~~~~~~-~~---~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.| .+  ++.......... ..   ..+|.|.++..+|.|.|+|.+.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            46665 47788999999999999999998775433 22  222222222211 11   2469999999999999999999


Q ss_pred             cCCcce-EEEEEEEEE
Q psy573          191 NAVGKI-SASATLTVQ  205 (216)
Q Consensus       191 n~~~~~-~~~~~l~v~  205 (216)
                      |..|.. +....|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            999985 444677764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.50  E-value=3.1e-14  Score=86.14  Aligned_cols=89  Identities=20%  Similarity=0.334  Sum_probs=62.2

Q ss_pred             cceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc----ccCceEEE-------e---cCcEEEEcccCC
Q psy573           25 EEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----ENSKRLRL-------V---DGTNLAIQDSRK   89 (216)
Q Consensus        25 ~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~-------~---~~~~l~i~~~~~   89 (216)
                      |.+... |.+..+.+|+++.|.|.+ .+.|.+.+.|++++.....    ........       .   ....|.|.++..
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEE-ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            445443 678999999999999999 7899999999997643211    00000110       1   124699999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEE
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v  115 (216)
                      +|+|.|+|.+.|..|.. ...+.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGIS-FHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEE-EEEEEEEE
Confidence            99999999999988875 34566655

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=86.94  Aligned_cols=83  Identities=20%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE--------EecCcEEEEcccCCCCCceE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR--------LVDGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y   95 (216)
                      ||.+........+.+|+.++|.|.+..+.|.+.+.|++++..+.........        ....+.|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            3444444445678899999999988557899999999998876432211111        11235799999999999999


Q ss_pred             EEEEEcCCCCc
Q psy573           96 QCVVKNVAGTR  106 (216)
Q Consensus        96 ~C~~~~~~~~~  106 (216)
                      +|.+.|..|..
T Consensus        82 ~C~a~N~~G~~   92 (104)
T d1nbqa2          82 SCEARNGYGTP   92 (104)
T ss_dssp             EEEEECSSSCC
T ss_pred             EEEEEECCCce
Confidence            99999988765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=85.45  Aligned_cols=94  Identities=14%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCC-CCCc--EEEEeeCCccCCCCCeee-ecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .++.+.+.+....+.+|+.+.|.|.+.| .|.+  ++.|++++..+....... ...++|.|.....+|+|.|+|.|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            3556667777778999999999999976 4544  688999988764321111 12356899999999999999999999


Q ss_pred             CcceEEEEEEEEEeccee
Q psy573          193 VGKISASATLTVQSKYLK  210 (216)
Q Consensus       193 ~~~~~~~~~l~v~~~p~~  210 (216)
                      .|.....+.+.+.+++.+
T Consensus        83 ~g~~~~~~~~~~s~p~~L  100 (103)
T d1iama1          83 LRPQGLELFENTSAPYQL  100 (103)
T ss_dssp             CGGGTSCEEEEECCCEEC
T ss_pred             CCCccCeEeeeEcCCCEE
Confidence            998777777777765544

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=83.37  Aligned_cols=85  Identities=27%  Similarity=0.369  Sum_probs=64.7

Q ss_pred             ceEEeCCCc-eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee------e----------cCCeEEEecCCCCC
Q psy573          119 PYIIRGPKD-TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV------L----------PSRSLQLSDVRLED  181 (216)
Q Consensus       119 p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~------~----------~~~~l~i~~~~~~d  181 (216)
                      |.+...... ..+..|+.+.|.|.+.+.|.|.+.|++++..+.......      .          ..+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            444443332 356789999999999999999999999988765321110      0          01369999999999


Q ss_pred             Ce-EEEEEEEcCCcceEEEEEEE
Q psy573          182 GG-EYVCEAENAVGKISASATLT  203 (216)
Q Consensus       182 ~g-~y~C~~~n~~~~~~~~~~l~  203 (216)
                      .| .|+|.|.|..|..+..+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999998888775

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.3e-14  Score=79.71  Aligned_cols=79  Identities=24%  Similarity=0.443  Sum_probs=59.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+.+.|....+.+|+.++|.|.+ .+.+.+ .+.|++++..+..         .+..|.|.+++.+|+|.|.|.+.+..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEE-eeeeeecceeeeeeeeeeec---------ccceeEECCCChhhCCcEEEEecCCC
Confidence            667788888899999999999998 566655 5667888887632         24579999999999999999987643


Q ss_pred             CCcccceeEEEEe
Q psy573          104 GTRESTDAVLRVL  116 (216)
Q Consensus       104 ~~~~~~~~~l~v~  116 (216)
                      .   +..+.|.|.
T Consensus        72 ~---S~~v~l~V~   81 (82)
T d1f2qa1          72 E---SEPVYLEVF   81 (82)
T ss_dssp             C---CCCEEEEEE
T ss_pred             C---cccEEEEEE
Confidence            2   445566553

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=85.23  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             eccceEecccceEEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE
Q psy573           23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .|+.+.+.+....+.+|+.++|.|.+..+.|.+  .+.|++++..+.......  ....+.|.|.....+|.|.|+|.+.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~--~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG--EPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--TTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc--ccceEEEEEeeehhHCCCEEEEEEE
Confidence            367888888888899999999999985555655  578999998874321110  0112469999999999999999999


Q ss_pred             cCCCCcccceeEEEEeec
Q psy573          101 NVAGTRESTDAVLRVLVK  118 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~  118 (216)
                      |..+.. .....+.+..+
T Consensus        81 n~~g~~-~~~~~~~~s~p   97 (103)
T d1iama1          81 LDLRPQ-GLELFENTSAP   97 (103)
T ss_dssp             EECGGG-TSCEEEEECCC
T ss_pred             eCCCCc-cCeEeeeEcCC
Confidence            987654 33445555443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-13  Score=79.84  Aligned_cols=76  Identities=25%  Similarity=0.430  Sum_probs=56.8

Q ss_pred             ccceEeccc-ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceEEEec-CcEEEEcccCCCCCceEEEEEE
Q psy573           24 REEFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLVD-GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        24 ~~~~~~~~~-~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +|.|..... ...+.+|+.+.|.|.+ . .|.+.+.||+++..+..... ......+ ...|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-S-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE-C-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            345554444 3578999999999998 4 48889999999998854332 2233222 2479999999999999999986


Q ss_pred             c
Q psy573          101 N  101 (216)
Q Consensus       101 ~  101 (216)
                      +
T Consensus        83 n   83 (94)
T d1pd6a_          83 G   83 (94)
T ss_dssp             T
T ss_pred             e
Confidence            6

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-15  Score=85.14  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      |....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...            +.+.+++.+|+|.|.|.+.|..|.. +..
T Consensus        11 p~~~~~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~-~~~   76 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEV-TRE   76 (84)
T ss_dssp             CSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             CccEEEeCCCEEEEEEEE-eEcCccEEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEE-EEE
Confidence            566889999999999998 89999999999998876321            2245678899999999999988765 556


Q ss_pred             eEEEEee
Q psy573          111 AVLRVLV  117 (216)
Q Consensus       111 ~~l~v~~  117 (216)
                      +.|.|..
T Consensus        77 ~~l~V~~   83 (84)
T d2oz4a3          77 VTVNVLS   83 (84)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            6777654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=82.22  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             eeEeCCCcEEEEE------EeCCCCCcEEEEeeCCccCCCCC-eeeecCCeEEEecCCCCCCeEEEEEEEcCCcc----e
Q psy573          128 TTVSAGSIIVFEC------SVGGDAVLTVHWKRLGSAMPEDR-MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK----I  196 (216)
Q Consensus       128 ~~~~~g~~~~l~C------~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~----~  196 (216)
                      ..+..|....|.|      .+.+.|.|.+.|++++..+.... .....++.|.|.++..+|+|.|+|.|.|..+.    .
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~v   88 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI   88 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEE
Confidence            3577899999999      56788999999999999886543 33445678999999999999999999987764    3


Q ss_pred             EEEEEEEEEec
Q psy573          197 SASATLTVQSK  207 (216)
Q Consensus       197 ~~~~~l~v~~~  207 (216)
                      ++.+.+.+...
T Consensus        89 t~~i~~~v~~~   99 (103)
T d1iray2          89 TRVIEFITLEE   99 (103)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEECCC
Confidence            44555555443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=7e-14  Score=80.39  Aligned_cols=79  Identities=24%  Similarity=0.397  Sum_probs=60.3

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+.+.|....+.+|+.++|.|.+ .+.+. ..+.|++++..+..         .+..|.|.++..+|+|.|.|.+.+..
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~-~~~~~~~~~~w~~~g~~~~~---------~~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRG-THSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEEC-SSCCCTTCCEEEETTEECTT---------CCSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEE-eeccceeEEEeecccccccc---------cccceEEeeccccCCcEEEEECCCCc
Confidence            456677888899999999999998 55554 47899999988732         23569999999999999999987643


Q ss_pred             CCcccceeEEEEe
Q psy573          104 GTRESTDAVLRVL  116 (216)
Q Consensus       104 ~~~~~~~~~l~v~  116 (216)
                         .+..+.|.|.
T Consensus        75 ---~S~~v~l~V~   84 (85)
T d2fcba1          75 ---LSDPVHLTVL   84 (85)
T ss_dssp             ---CCCCEEEEEE
T ss_pred             ---ccccEEEEEE
Confidence               2445556553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=4.9e-14  Score=84.45  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCC---CCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          126 KDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPE---DRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~---~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..   .+... ...+.|.|.++..+|.|.|+|.+.|..|..+.++
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            45689999999999997 6789999999999876532   22222 3457899999999999999999999999876654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=7.1e-14  Score=83.41  Aligned_cols=80  Identities=18%  Similarity=0.401  Sum_probs=59.9

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------ccccCceEEEecCcEEEEcccCCCCCce
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   94 (216)
                      |.+...+....+.+|++++|.|.+ .+.|.+.+.|++.+...          ......+.. ..+++|.|.+++.+|+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT-FSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE-EETTEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeeccccccccceeeEEE-ecCCEEEEeECCccCCEE
Confidence            345556667889999999999998 77888999999854321          111122222 234679999999999999


Q ss_pred             EEEEEEcCCCCc
Q psy573           95 YQCVVKNVAGTR  106 (216)
Q Consensus        95 y~C~~~~~~~~~  106 (216)
                      |.|.+.+..+..
T Consensus        80 Y~C~a~n~~g~~   91 (102)
T d1f97a1          80 YTCMVSEEGGQN   91 (102)
T ss_dssp             EEEEEEETTSSS
T ss_pred             EEEEEEECCCCE
Confidence            999999988765

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.7e-14  Score=82.84  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~   99 (216)
                      .|.|. .+.+..+.+|+++.|.|.+ .+.|.|.+.|++ +................   .++|.|.++..+|+|.|+|.+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~-~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEE-ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEE-eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            46675 5788999999999999998 777777555433 22111111111122222   246999999999999999999


Q ss_pred             EcCCCCcccceeEEEE
Q psy573          100 KNVAGTRESTDAVLRV  115 (216)
Q Consensus       100 ~~~~~~~~~~~~~l~v  115 (216)
                      .|..|...+....|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9988876555456655

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=78.91  Aligned_cols=78  Identities=18%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      |.+...|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+..      ....|.|..+..+|+|.|+|.+.|..++..
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~------~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~   78 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT------HTQPSYRFKANNNDSGEYTCQTGQTSLSDP   78 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT------CCSSEEEEECCGGGCEEEEEECTTSBCCCC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc------cccceEEeeccccCCcEEEEECCCCccccc
Confidence            445666677789999999999999888765 5889999887654      346799999999999999999988766554


Q ss_pred             EEEEEEE
Q psy573          198 ASATLTV  204 (216)
Q Consensus       198 ~~~~l~v  204 (216)
                      .  .|.|
T Consensus        79 v--~l~V   83 (85)
T d2fcba1          79 V--HLTV   83 (85)
T ss_dssp             E--EEEE
T ss_pred             E--EEEE
Confidence            3  4444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.1e-14  Score=81.24  Aligned_cols=71  Identities=25%  Similarity=0.432  Sum_probs=57.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR  106 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  106 (216)
                      ...+.+|+++.|.|.+ .+ +.+.+.|++++..+... ..++....+++|.|.+++.+|+|.|.|.+.+..+..
T Consensus         6 ~~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1           6 QHFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKAE-SPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCCC-SSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             heeEeCCCEEEEEEEe-ec-cCCceeeecCcccceee-eeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            4678999999999998 55 66799999999887543 334445566789999999999999999999876643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8e-14  Score=86.98  Aligned_cols=85  Identities=26%  Similarity=0.477  Sum_probs=62.6

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc---------------------------cCceEE--Eec-C
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---------------------------NSKRLR--LVD-G   79 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------------------~~~~~~--~~~-~   79 (216)
                      .+..+.+.+|+.++|.|.+ .+.|.+.+.|++++..+...                           ...++.  ... .
T Consensus        15 ~~~~v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   93 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR   93 (130)
T ss_dssp             CCCEEEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred             CCCCEEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCE
Confidence            4567889999999999999 78999999999976543110                           011111  111 2


Q ss_pred             cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           80 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        80 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      ..|.|.++..+|+|.|+|.+.|..|.. ...+.|.|.
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            469999999999999999999998875 445666653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.45  E-value=3.1e-14  Score=82.60  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      +...+.+..+.+|+++.|.|.+  +.|.+.+.||++|..+.......+...+ ...|.|.+++.+|+|.|+|.+.+.
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence            3445677899999999999997  4688899999999988554443333322 247999999999999999998653

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.8e-14  Score=82.77  Aligned_cols=86  Identities=16%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc--cCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE  107 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  107 (216)
                      .|....+.+|+.+.|.|.+..+.+.+.+.||+++..+...  ...++. ..+++|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-   85 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH-QHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-   85 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEE-EETTEEEETTCCGGGCEEEEEEEEETTEEE-
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEe-ccCCEEEeccceecCCEEEEEEEECCCCeE-
Confidence            4455678899999999988556788999999988655322  222222 346789999999999999999999987765 


Q ss_pred             cceeEEEEee
Q psy573          108 STDAVLRVLV  117 (216)
Q Consensus       108 ~~~~~l~v~~  117 (216)
                      ...+.|.|..
T Consensus        86 ~~~~~L~V~~   95 (101)
T d1iray1          86 RIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEe
Confidence            4456777654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=78.68  Aligned_cols=75  Identities=16%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+|.+...|....+.+|+.+.|.|.+.+.+.+. +.|++++..+..      ....|.|.++..+|+|.|+|.+.|...+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------cceeeEecCCcccCCEEEEEEccCCCcc
Confidence            345566667778899999999999999888775 667787765432      3567999999999999999999887665


Q ss_pred             eE
Q psy573          196 IS  197 (216)
Q Consensus       196 ~~  197 (216)
                      ..
T Consensus        78 ~~   79 (84)
T d1fnla1          78 DP   79 (84)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=85.03  Aligned_cols=78  Identities=19%  Similarity=0.399  Sum_probs=58.0

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc----------ccCceEEEecCcEEEEcccCCCCCceEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLVDGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   97 (216)
                      ...++.+.+.+|++++|.|.+ .+.|.+.+.|++++..+..          ....+.. ..++.|.|.+++.+|+|.|.|
T Consensus         8 ~~~~~~v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           8 HSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT-FLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             ECSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE-EETTEEECSCCCTTSCSEEEE
T ss_pred             ECCCCeEEEeCCCeEEEEEEe-CCCCCCeeEEEeeeeceeeeeeccceeeccccceee-ecCceEEEecccccceeeEEE
Confidence            334455678999999999998 7889999999997543311          1111111 224579999999999999999


Q ss_pred             EEEcCCCCcc
Q psy573           98 VVKNVAGTRE  107 (216)
Q Consensus        98 ~~~~~~~~~~  107 (216)
                      .+.|..|...
T Consensus        86 ~a~n~~G~~~   95 (105)
T d1nbqa1          86 MVSEEGGNSY   95 (105)
T ss_dssp             EEEETTSSCE
T ss_pred             EEEECCCCEE
Confidence            9999887753

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.4e-14  Score=79.24  Aligned_cols=79  Identities=23%  Similarity=0.394  Sum_probs=58.7

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      |.+...|....+.+|+.+.|.|.+.+.|.+. +.|++++..+..      ....|.|.+++.+|+|.|.|.+.|..++..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~   75 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNESEP   75 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSCCCC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec------ccceeEECCCChhhCCcEEEEecCCCCccc
Confidence            4455566777899999999999999888775 667888876643      346799999999999999999988766554


Q ss_pred             EEEEEEEE
Q psy573          198 ASATLTVQ  205 (216)
Q Consensus       198 ~~~~l~v~  205 (216)
                        +.|.|.
T Consensus        76 --v~l~V~   81 (82)
T d1f2qa1          76 --VYLEVF   81 (82)
T ss_dssp             --EEEEEE
T ss_pred             --EEEEEE
Confidence              445553

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=78.82  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=60.4

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeeec---CCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP---SRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ..+.+..+..|+.+.|.|.+. .|.+.+.|++++..+...   +.....   ...|.|.++..+|+|.|+|.+.|    .
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----c
Confidence            445778899999999999984 688899999999876432   222222   24799999999999999999966    3


Q ss_pred             EEEEEEEEEe
Q psy573          197 SASATLTVQS  206 (216)
Q Consensus       197 ~~~~~l~v~~  206 (216)
                      ..+..|.|..
T Consensus        80 ~~~a~l~V~~   89 (90)
T d1x44a1          80 QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEE
Confidence            4556666654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.4e-15  Score=91.35  Aligned_cols=95  Identities=20%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             EEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCC---Ceeee----c---CCeEEEecCCCCC
Q psy573          113 LRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPED---RMSVL----P---SRSLQLSDVRLED  181 (216)
Q Consensus       113 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~---~~~~~----~---~~~l~i~~~~~~d  181 (216)
                      |.|..+|.+.. +....+.+|+.+.|.|.+.+.+ .+.+.|++++..+...   +....    .   ...|.|.++...|
T Consensus         2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            45666776654 4556778999999999998864 5679999998876532   12211    1   1359999999998


Q ss_pred             -CeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          182 -GGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       182 -~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                       +|.|+|.|.|..|..+..+.|.|.+.+
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence             799999999999999999999887654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.2e-13  Score=81.09  Aligned_cols=86  Identities=17%  Similarity=0.282  Sum_probs=62.7

Q ss_pred             cceEEecCCcEEEE---eeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--------cEEEEcccCCCCCceEEEEEE
Q psy573           32 KSQRVAAGDTALLE---CGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        32 ~~~~~~~G~~~~l~---C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--------~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .++.+.+|....+.   |.+ .+.|.+.+.|++++..+.............        ..|.|.++...|+|.|.|.+.
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            34455556665555   477 899999999999999885433333332221        359999999999999999999


Q ss_pred             cCCCCcccceeEEEEeecc
Q psy573          101 NVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus       101 ~~~~~~~~~~~~l~v~~~p  119 (216)
                      |..|.. ...+.|.|..+|
T Consensus        84 N~~G~~-~~~i~v~v~~~P  101 (107)
T d1he7a_          84 NPFGQA-SASIMAAFMDNP  101 (107)
T ss_dssp             ETTEEE-EEEEEECCCSCT
T ss_pred             eCCCEE-EEEEEEEEEcCC
Confidence            998875 556777777666

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=77.65  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             eEEecCCcEEEEeeC-----CCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           34 QRVAAGDTALLECGP-----PRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~-----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      +.+..|....|.|..     ..+.|.|.+.|+++++.+...  .......++.|.|.++..+|+|.|+|.+.+..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCC--SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCC--CcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            567899999999942     157788999999999998542  2223444678999999999999999999876543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.7e-13  Score=78.94  Aligned_cols=80  Identities=25%  Similarity=0.387  Sum_probs=59.3

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-----CcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV  112 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  112 (216)
                      .+....|.|.+ .+.|.+.+.|++++..+............     .+.|.|.+++.+|+|.|+|.+.|..|.. ...+.
T Consensus        16 ~~~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   93 (105)
T d1wwca_          16 LRLEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTIN   93 (105)
T ss_dssp             CCCEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             EEEEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEE
Confidence            44556688888 78999999999999988544333322221     1359999999999999999999988765 45567


Q ss_pred             EEEeecc
Q psy573          113 LRVLVKP  119 (216)
Q Consensus       113 l~v~~~p  119 (216)
                      |.|..+|
T Consensus        94 v~V~~~P  100 (105)
T d1wwca_          94 GHFLKEP  100 (105)
T ss_dssp             ECCSCCC
T ss_pred             EEEEeCC
Confidence            7666554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.5e-14  Score=87.39  Aligned_cols=96  Identities=18%  Similarity=0.309  Sum_probs=69.2

Q ss_pred             eeEEeeccceEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEe----cC---cEEEEcccCC
Q psy573           18 LKIEMLREEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLV----DG---TNLAIQDSRK   89 (216)
Q Consensus        18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~----~~---~~l~i~~~~~   89 (216)
                      |+|.. ||.+ ..+..+.+.+|+.+.|.|.+ .+ .|.+.+.|++++..+......++...    .+   ..|.|.++..
T Consensus         2 L~V~~-Pp~i-~~~~~~~~~~G~~~~l~C~v-~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNG-PPII-SSTQTQHALHGEKGQIKCFI-RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCS-SCCE-EEECCCCCCTTSCCCCCEEE-CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEec-CCEE-ecCCCEEEecCCEEEEEEEe-ecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            45543 3444 55667788999999999998 55 56678999999988854433333222    11   3599999999


Q ss_pred             CC-CceEEEEEEcCCCCcccceeEEEEee
Q psy573           90 TD-DGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        90 ~d-~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      .| +|.|+|.+.|..|.. ...+.|.|..
T Consensus        79 ~D~~G~Y~C~A~N~~G~~-~~~~~L~V~~  106 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSD-TEIIRLKEQG  106 (115)
T ss_dssp             HHHHSCEEEEEECSSCEE-EEEECCCCSC
T ss_pred             hcCCeEEEEEEEECCCeE-EEEEEEEEEC
Confidence            99 699999999998875 5556666654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=75.83  Aligned_cols=74  Identities=24%  Similarity=0.364  Sum_probs=56.3

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee-c--CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-P--SRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~-~--~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ...+.+|+.+.|.|.+. .|.+.+.|++++..+...  ..... .  ...|.|.++..+|+|.|+|.|.|    ...+..
T Consensus        15 ~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~   89 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTE   89 (94)
T ss_dssp             EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCE
T ss_pred             CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEE
Confidence            34788999999999985 588899999999987543  22222 2  24699999999999999999965    344556


Q ss_pred             EEEE
Q psy573          202 LTVQ  205 (216)
Q Consensus       202 l~v~  205 (216)
                      |.|.
T Consensus        90 l~V~   93 (94)
T d1pd6a_          90 LFVK   93 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.2e-12  Score=78.33  Aligned_cols=81  Identities=20%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-----e------------ccccCceEEEecCcEEEEcccCCCCCceEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----I------------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-----~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   96 (216)
                      ..+.+|++|.|.|.. .......+.|++....     +            .....+|..+..+++|.|.+++.+|+|.|.
T Consensus         9 ~~v~~G~~V~L~c~~-~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1           9 PQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             SSCCTTCCEEEEEES-CCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             CcccCCCCEEEEecC-CCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEE
Confidence            346799999999985 3334568999985321     1            122456788888899999999999999999


Q ss_pred             EEEEcCCCCcccceeEEEE
Q psy573           97 CVVKNVAGTRESTDAVLRV  115 (216)
Q Consensus        97 C~~~~~~~~~~~~~~~l~v  115 (216)
                      |.+.+..+......+.|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9998766544344455543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.35  E-value=1.6e-13  Score=79.52  Aligned_cols=80  Identities=23%  Similarity=0.312  Sum_probs=61.2

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      ..++.+..+.+|+++.|.|.+ +.|.+.+.|++++..+... +....   ....|.|.++..+|+|.|+|.+.|..+   
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~---   80 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS---   80 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC---
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE---
Confidence            345677899999999999998 4788999999999987543 33332   224699999999999999999876543   


Q ss_pred             EEEEEEEEe
Q psy573          198 ASATLTVQS  206 (216)
Q Consensus       198 ~~~~l~v~~  206 (216)
                       ++.|.|.+
T Consensus        81 -sa~l~V~e   88 (89)
T d1tiua_          81 -AANLKVKE   88 (89)
T ss_dssp             -CEEEEEEC
T ss_pred             -EEEEEEEE
Confidence             34565553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.34  E-value=1e-12  Score=79.17  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             eeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCC--------CCeeeecCCeEEEecCCCCCCe---EEEEEEEcCCcc
Q psy573          128 TTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDVRLEDGG---EYVCEAENAVGK  195 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~n~~~~  195 (216)
                      .++.+|+.+.|.|.+ .|.|.|.+.|++++..+..        .+......++|.|.+++..|+|   .|.|.|.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            356789999999997 8999999999998765421        2334445678999999988766   899999999998


Q ss_pred             eEEEEEEEE
Q psy573          196 ISASATLTV  204 (216)
Q Consensus       196 ~~~~~~l~v  204 (216)
                      ....+.+.+
T Consensus        92 ~~~~~~~~~  100 (111)
T d1biha2          92 EEVVLVEYE  100 (111)
T ss_dssp             SCEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            776654443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=77.60  Aligned_cols=82  Identities=17%  Similarity=0.307  Sum_probs=63.1

Q ss_pred             ecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--c----CcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573           37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--D----GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD  110 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  110 (216)
                      ..++...|.|.+ .+.|.+.+.|++++..+...........  .    .+.|.|.+++..|+|.|+|.+.|..|.. +..
T Consensus        14 ~~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~   91 (103)
T d1wwbx_          14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQ   91 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred             ccceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEE
Confidence            367788899998 8999999999999999854333332221  1    2369999999999999999999998876 556


Q ss_pred             eEEEEeecce
Q psy573          111 AVLRVLVKPY  120 (216)
Q Consensus       111 ~~l~v~~~p~  120 (216)
                      +.|.|...|.
T Consensus        92 ~~v~V~~~P~  101 (103)
T d1wwbx_          92 ISAHFMGWPG  101 (103)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEEEeCCC
Confidence            7777766653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.1e-12  Score=74.21  Aligned_cols=71  Identities=15%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc----------ccCceEEEe-cCcEEEEcccCCCCCceEEEEEE
Q psy573           32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      +.+....|++|+|.|.+  +.|.+.+.|++++..+..          ....+.... .+++|+|.+++.+|+|.|.|.+.
T Consensus         3 ~~v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             cEEEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence            34678899999999976  568889999998876531          122233332 24589999999999999999987


Q ss_pred             cCCC
Q psy573          101 NVAG  104 (216)
Q Consensus       101 ~~~~  104 (216)
                      +..+
T Consensus        81 n~~~   84 (93)
T d1ccza1          81 NITD   84 (93)
T ss_dssp             TCCS
T ss_pred             CCCc
Confidence            6543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=8e-12  Score=73.47  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             ceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEecc--------ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           33 SQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+....|++|+|.|..... .....+.|++++..+..        ....+.....+++|+|.+++.+|+|.|+|.+.+..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            4567899999999964222 23357999998876621        22334555667899999999999999999999887


Q ss_pred             CCcc-cceeEEEEe
Q psy573          104 GTRE-STDAVLRVL  116 (216)
Q Consensus       104 ~~~~-~~~~~l~v~  116 (216)
                      +... ...+.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            7642 445666654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.1e-12  Score=76.24  Aligned_cols=72  Identities=26%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE---ec----------CcEEEEcccCCCCCce-EEEEE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VD----------GTNLAIQDSRKTDDGR-YQCVV   99 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~----------~~~l~i~~~~~~d~g~-y~C~~   99 (216)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+..........   ..          .+.|.|.+++.+|.|. |.|.+
T Consensus        12 i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A   90 (107)
T d1iray3          12 MEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA   90 (107)
T ss_dssp             EECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred             EEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence            557789999999999 788999999999998875433222111   10          1369999999999995 99999


Q ss_pred             EcCCCCc
Q psy573          100 KNVAGTR  106 (216)
Q Consensus       100 ~~~~~~~  106 (216)
                      .|..|..
T Consensus        91 ~N~~G~~   97 (107)
T d1iray3          91 KNTHGID   97 (107)
T ss_dssp             ECSSCEE
T ss_pred             EeCCCeE
Confidence            9998865

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=1.2e-12  Score=78.88  Aligned_cols=73  Identities=27%  Similarity=0.407  Sum_probs=57.3

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc-----cCceEEEecCcEEEEcccCCCCCc---eEEEEEEcCCCC
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE-----NSKRLRLVDGTNLAIQDSRKTDDG---RYQCVVKNVAGT  105 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~  105 (216)
                      .++.+|+++.|.|.+..+.|.|.+.|++++..+...     ...+.....++.|.|.+++..|+|   .|.|.+.|..+.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            356799999999987578899999999986654221     223345566788999999999887   699999998876


Q ss_pred             c
Q psy573          106 R  106 (216)
Q Consensus       106 ~  106 (216)
                      .
T Consensus        92 ~   92 (111)
T d1biha2          92 E   92 (111)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=77.10  Aligned_cols=80  Identities=15%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      .+.+.+....+.+|+.++|.|.+..+.|  .+.+.||+++..+............   ...|.+.....+|.|.|+|++.
T Consensus         4 ~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           4 QVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             CCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            3445666678899999999999954444  4589999999988432211111011   1247777788888889999999


Q ss_pred             cCCCC
Q psy573          101 NVAGT  105 (216)
Q Consensus       101 ~~~~~  105 (216)
                      |..+.
T Consensus        84 n~~~~   88 (106)
T d1zxqa1          84 LDLMS   88 (106)
T ss_dssp             EECGG
T ss_pred             ecCCC
Confidence            87654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.4e-13  Score=78.79  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             CceeEeCCCcEEEEEEeCC-C--CCcEEEEeeCCccCCCCCeeee------cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          126 KDTTVSAGSIIVFECSVGG-D--AVLTVHWKRLGSAMPEDRMSVL------PSRSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~-~--p~~~i~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ....+.+|+.+.|.|.+.| .  |.+.+.|++++..+........      ....|.+.....+|+|.|+|.|.|..+..
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            3457889999999999976 3  4558999999987642211110      11347777777778889999999998876


Q ss_pred             EEEEEEEEEe
Q psy573          197 SASATLTVQS  206 (216)
Q Consensus       197 ~~~~~l~v~~  206 (216)
                      ...+.+.+..
T Consensus        90 ~~~~~~~~s~   99 (106)
T d1zxqa1          90 GGNIFHKHSA   99 (106)
T ss_dssp             TCCEEEEECC
T ss_pred             CCeeEecccC
Confidence            5555555543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=8.4e-11  Score=68.99  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=57.4

Q ss_pred             eeEeCCCcEEEEEEeC-CC-CCcEEEEeeCCccCC-----------CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          128 TTVSAGSIIVFECSVG-GD-AVLTVHWKRLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~-~~-p~~~i~W~~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .....|+++.|.|... .. ....|.|++++..+.           ..+.....+++|.|.+++.+|+|.|.|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            3556799999999642 22 334699999875441           2233444567899999999999999999999988


Q ss_pred             ce--EEEEEEEEE
Q psy573          195 KI--SASATLTVQ  205 (216)
Q Consensus       195 ~~--~~~~~l~v~  205 (216)
                      ..  .+.+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            75  567777764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=5.7e-10  Score=68.65  Aligned_cols=87  Identities=20%  Similarity=0.321  Sum_probs=61.9

Q ss_pred             CCCceeEeCCCcEEEEEEeCCC---CCcEEEEeeCCccCC------------------CCCeeeec------CCeEEEec
Q psy573          124 GPKDTTVSAGSIIVFECSVGGD---AVLTVHWKRLGSAMP------------------EDRMSVLP------SRSLQLSD  176 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~~~~------------------~~~~~~~~------~~~l~i~~  176 (216)
                      +.....+..|+++.|.|.....   ....+.|++.+....                  ..+.....      +.+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            3445788899999999987432   244689988643110                  01111111      24699999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEEeccee
Q psy573          177 VRLEDGGEYVCEAENAVGKISASATLTVQSKYLK  210 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~  210 (216)
                      ++.+|+|.|.|.+.+..+.....+.|.|.+++.+
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            9999999999999999888888999999886543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.5e-10  Score=71.31  Aligned_cols=86  Identities=24%  Similarity=0.353  Sum_probs=57.1

Q ss_pred             ceEEecCCcEEEEeeCC--CCCCCCeeEEeeCCEEe-----------c----cccCceEEEec------CcEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPI-----------D----FENSKRLRLVD------GTNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~--~~~~~~~~~W~~~~~~~-----------~----~~~~~~~~~~~------~~~l~i~~~~~   89 (216)
                      .+.+..|++++|.|.+.  .+.....+.|++.+...           .    .....+..+..      +.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            47889999999999852  22334578999864310           0    11222333321      34799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEeecc
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKP  119 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p  119 (216)
                      +|+|.|+|.+.+..+.. ...+.|.|..++
T Consensus        91 ~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~  119 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQE-EAAVELKVEDPF  119 (126)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEECTT
T ss_pred             hHCeEEEEEEEECCCEE-EEEEEEEEeCCC
Confidence            99999999999865543 455677776644

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.6e-11  Score=69.23  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC-------------CCCeeee-cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-------------~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      ......|++++|.|.+. .|.+.+.|++++..+.             ..+.... .++.|.|.+++.+|+|.|.|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            34677899999999864 5778999999876431             0111111 3467999999999999999999887


Q ss_pred             CcceEEEEEEEE
Q psy573          193 VGKISASATLTV  204 (216)
Q Consensus       193 ~~~~~~~~~l~v  204 (216)
                      .++..  +.|.|
T Consensus        83 ~~t~~--~~l~V   92 (93)
T d1ccza1          83 TDTMK--FFLYV   92 (93)
T ss_dssp             CSCEE--EEEEE
T ss_pred             CcEEE--EEEEE
Confidence            66554  44444

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.9e-10  Score=65.11  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+...|.. .+..|++|+|.|..  ......+.|++++..................+.|.+++.+|+|.|+|...+..
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeeCCC-cccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            555566644 57899999999986  34556889999886542111110001112469999999999999999987643

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=2.2e-10  Score=68.25  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccC--------------------CCCCeeeecCCeEEEecCCCCCCeEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      .+.+|+++.|.|.........+.|+|.....                    -.++.....+++|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            4679999999998554456689999854311                    01244455668899999999999999999


Q ss_pred             EEcCCcc-eEEEEEEEE
Q psy573          189 AENAVGK-ISASATLTV  204 (216)
Q Consensus       189 ~~n~~~~-~~~~~~l~v  204 (216)
                      +.+..+. ...++.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            9877643 544555543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.04  E-value=1.6e-09  Score=64.35  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=51.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-------ccccCceEEEec---CcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVD---GTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~~---~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.. .+.....+.||+.  +.   .+       ......++....   ...|.|.+++.+|
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKA-SEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEec-CCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            4556888899999999999987 3334446899983  11   11       112233444332   2479999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-09  Score=64.12  Aligned_cols=77  Identities=10%  Similarity=0.094  Sum_probs=51.8

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |.+...|.. .|..|++|+|.|..  ..+...+.|++++.........  .........+.|.+++..|+|.|+|...+.
T Consensus         8 PsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           8 PFISAKSSP-VIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCEEESSCS-EEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEecCCC-ceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            556666654 58899999999986  3456688999876422111111  111123457999999999999999998875


Q ss_pred             CC
Q psy573          103 AG  104 (216)
Q Consensus       103 ~~  104 (216)
                      ..
T Consensus        85 ~~   86 (99)
T d1ucta1          85 HY   86 (99)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=3.3e-09  Score=62.95  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEec---CcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLVD---GTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~~---~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.. .......+.||+..  +   .+       .......+....   ...|+|.+++.+
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   81 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRA-SKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE   81 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred             cEEccCCeEEecCCCCEEEEEEc-cCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec
Confidence            35567888899999999999987 33344578999831  1   11       011111222221   137999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|....
T Consensus        82 Dsa~YyCA~~~   92 (108)
T d1jhll_          82 DFAMYICQQHN   92 (108)
T ss_dssp             CCSEEEEEECS
T ss_pred             cceEEEEeeCC
Confidence            99999997654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.01  E-value=2e-09  Score=63.77  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=51.0

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe----------ccccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI----------DFENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~----------~~~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|.++.+.+|++++|.|.. .......+.||+.  |+..          ......++...   .+..|.|.+++.+
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~-s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRT-SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE   81 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CEEccCCEEEECCCCCEEEEEEe-CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc
Confidence            34567888899999999999987 4445556899983  2211          01111222221   2347999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999998654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.00  E-value=2.1e-09  Score=63.92  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEe----------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      ++..|..+.+.+|++++|.|.. .......+.||+..  +..          ......++...   .+..|+|.+++.+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCeEEECCCCCEEEEEEe-cCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            4567788899999999999986 33445578999842  111          01112233222   12479999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|.|...+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1j1pl_          83 FGMYFCQQAN   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEcCC
Confidence            9999997653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.00  E-value=1.3e-09  Score=64.56  Aligned_cols=74  Identities=20%  Similarity=0.383  Sum_probs=50.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe----------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI----------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~----------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.. .......+.||+.  ++..          ......++...   ....|.|.+++.+|
T Consensus         4 ltQsP~slsv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMT-STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEe-CCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            4567888889999999999986 3444457899973  2111          11222233322   22479999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|+|....
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.00  E-value=2.3e-09  Score=63.64  Aligned_cols=75  Identities=19%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|.++.+.+|+.++|.|.. .......+.||+..  +   .+       ......++...   ....|+|.+++.+
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRA-SQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE   81 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEE-CCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence            45677888999999999999987 44445688999831  1   11       11112223222   1236999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|....
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999997553

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=5e-09  Score=62.98  Aligned_cols=76  Identities=20%  Similarity=0.405  Sum_probs=52.5

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE-E--e--------ccccCceEEEec--C---cEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH-P--I--------DFENSKRLRLVD--G---TNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~-~--~--------~~~~~~~~~~~~--~---~~l~i~~~~   88 (216)
                      +.+.|..+.+.+|++++|.|.+........+.||+.  ++ +  +        ......++....  +   ..|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            456788899999999999998733444557899983  21 1  1        112233343321  1   359999999


Q ss_pred             CCCCceEEEEEEcC
Q psy573           89 KTDDGRYQCVVKNV  102 (216)
Q Consensus        89 ~~d~g~y~C~~~~~  102 (216)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.99  E-value=3.3e-09  Score=63.03  Aligned_cols=74  Identities=20%  Similarity=0.363  Sum_probs=50.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++|+|.|.. .......+.||+.  ++   .+       ......++...   ....|+|.+++.+|
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKA-SENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCEEeECCCCCEEEEEEe-cCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            4567888899999999999987 3444457999983  11   11       01112222222   23469999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|+|....
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.99  E-value=3.2e-09  Score=64.11  Aligned_cols=78  Identities=21%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---e----------ccccCceEEEec---C--cEEEEc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---I----------DFENSKRLRLVD---G--TNLAIQ   85 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~----------~~~~~~~~~~~~---~--~~l~i~   85 (216)
                      ++...|..+.+.+|++++|.|..........+.||+.  ++.   +          ......++....   +  ..|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            3556788889999999999997633445568899972  111   1          011223443321   1  369999


Q ss_pred             ccCCCCCceEEEEEEcCC
Q psy573           86 DSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~  103 (216)
                      +++.+|+|.|.|.+....
T Consensus        82 ~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             SCCGGGCEEEEEEEECTT
T ss_pred             CccccccccceeeEecCC
Confidence            999999999999887543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-09  Score=63.77  Aligned_cols=67  Identities=21%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe--c----------cccCceEEEe------cCcEEEEcccCCCCCceE
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--D----------FENSKRLRLV------DGTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~--~----------~~~~~~~~~~------~~~~l~i~~~~~~d~g~y   95 (216)
                      +...+|++++|+|.. .......+.||+.....  .          ....+++...      .+.+|.|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~-s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEE-ecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            567899999999987 55566689999853311  0          1112233221      123699999999999999


Q ss_pred             EEEEEc
Q psy573           96 QCVVKN  101 (216)
Q Consensus        96 ~C~~~~  101 (216)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.96  E-value=3.7e-09  Score=62.63  Aligned_cols=74  Identities=16%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E-E-e--------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H-P-I--------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~-~-~--------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.. .......+.||+..  . . +        ......++...   ...+|+|.+++.+|
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKA-SQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             eECcCCEEEECCCCCEEEEEEc-CCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            4567888899999999999986 34444468999831  1 1 1        01112223222   22479999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|.|....
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.95  E-value=4.7e-09  Score=62.15  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEe-------ccccCceEEEe---cCcEEEEcccCCCCC
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPI-------DFENSKRLRLV---DGTNLAIQDSRKTDD   92 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d~   92 (216)
                      ...|.++.+.+|++++|.|.. .......+.||+..     +.+       ......++...   ....|.|.+++.+|+
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~-~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRA-SQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEe-CCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            456888899999999999987 44445568999842     111       11112233222   123699999999999


Q ss_pred             ceEEEEEEc
Q psy573           93 GRYQCVVKN  101 (216)
Q Consensus        93 g~y~C~~~~  101 (216)
                      |.|.|....
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.4e-09  Score=65.23  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=53.5

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE------ec-c-------------ccCceEEEe--cC
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP------ID-F-------------ENSKRLRLV--DG   79 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~------~~-~-------------~~~~~~~~~--~~   79 (216)
                      +|.+.+.|....+.+|++++|.|.+ .+.....+.||+.  +..      +. .             ....++...  .+
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEV-LGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEE-ESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEE-cCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            3678888999999999999999987 4555667999982  111      10 0             001122111  11


Q ss_pred             --cEEEEcccCCCCCceEEEEEEc
Q psy573           80 --TNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        80 --~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                        ..|+|.+++.+|+|.|.|.+..
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEeC
Confidence              3699999999999999998764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=5.1e-09  Score=62.08  Aligned_cols=74  Identities=16%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      ++..|..+.+.+|++++|.|.. .......+.||+.  ++   .+       ......++...   ....|.|.+++.+|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKA-SQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEe-CCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            4556777889999999999986 3334457899983  11   11       11112233322   22469999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      ++.|.|....
T Consensus        83 sA~YyCa~~~   92 (107)
T d1mexl1          83 LAEYFCQQYN   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             ceeEEEeECC
Confidence            9999998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.92  E-value=1.5e-08  Score=60.85  Aligned_cols=77  Identities=23%  Similarity=0.432  Sum_probs=52.9

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-------cccCceEEEe-----cCcEEEEcccC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLV-----DGTNLAIQDSR   88 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~-----~~~~l~i~~~~   88 (216)
                      ++...|..+.+.+|++++|.|.. .......+.||+..  .   .+.       .....++...     ...+|+|.+++
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   80 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEE-CCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEE-cCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence            45677888999999999999987 44456689999732  1   110       0111122221     12369999999


Q ss_pred             CCCCceEEEEEEcCC
Q psy573           89 KTDDGRYQCVVKNVA  103 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~  103 (216)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          81 LSDSASYICVVSDRG   95 (114)
T ss_dssp             GGGCSEEEEEEECSC
T ss_pred             hhhCcccceeeecCC
Confidence            999999999987643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=6.7e-09  Score=61.53  Aligned_cols=72  Identities=17%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEec-------cccCceEEEec---CcEEEEcccCCCCCc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID-------FENSKRLRLVD---GTNLAIQDSRKTDDG   93 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~~-------~~~~~~~~~~~---~~~l~i~~~~~~d~g   93 (216)
                      .+|+++.+.+|++++|.|.. .......+.||+..     ..+.       .....++....   ...|.|.+++.+|+|
T Consensus         5 tQp~s~~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eeCCeEEECCCCCEEEEEEe-CCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence            34567889999999999987 44445578999731     1110       11122332221   247999999999999


Q ss_pred             eEEEEEEc
Q psy573           94 RYQCVVKN  101 (216)
Q Consensus        94 ~y~C~~~~  101 (216)
                      .|+|....
T Consensus        84 ~YyCa~~~   91 (106)
T d1lk3l1          84 IYFCQQSW   91 (106)
T ss_dssp             EEEEEECS
T ss_pred             Cccccccc
Confidence            99997543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.91  E-value=8.4e-09  Score=61.15  Aligned_cols=75  Identities=17%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|.++.+.+|++++|.|.. .......+.||+..  .   .+       ......++...   ....|.|.+++.+
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~-s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~   81 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKA-SQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYE   81 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEc-CCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCc
Confidence            34567778899999999999987 34444568899731  1   11       01112233222   2247999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|+|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.90  E-value=1.7e-08  Score=60.71  Aligned_cols=74  Identities=19%  Similarity=0.314  Sum_probs=50.1

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC-----CEEec----c-----------ccCceEEEe--c---CcEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-----GHPID----F-----------ENSKRLRLV--D---GTNL   82 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-----~~~~~----~-----------~~~~~~~~~--~---~~~l   82 (216)
                      ...|....+.+|+.++|.|.+........+.||+.     .+.+.    .           ....++...  .   ...|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            45677889999999999999833345567899974     22210    0           011122211  1   2369


Q ss_pred             EEcccCCCCCceEEEEEEc
Q psy573           83 AIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~  101 (216)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=5.3e-09  Score=63.50  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             EecccceEEecCCcEEEEeeCCC---CCCCCeeEEeeCC--E----Ee------------ccccCceEEEec-----CcE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPR---GHPEPTLVWKKNG--H----PI------------DFENSKRLRLVD-----GTN   81 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~---~~~~~~~~W~~~~--~----~~------------~~~~~~~~~~~~-----~~~   81 (216)
                      ...|..+.+..|++++|+|.+..   ......+.|++..  .    .+            .....+|+.+..     +.+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            34677788999999999997521   1234588998721  1    11            011234554432     247


Q ss_pred             EEEcccCCCCCceEEEEEEcCCC
Q psy573           82 LAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        82 l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      |.|.+++.+|+|.|.|.+.+..+
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC---
T ss_pred             EEECCCChHHCEEEEEEEEECCC
Confidence            99999999999999999987543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.3e-09  Score=64.35  Aligned_cols=80  Identities=19%  Similarity=0.336  Sum_probs=56.1

Q ss_pred             CceeEeCCCcEEEEEEeCCCC----CcEEEEeeCCccCC----------------------CCCeeee------cCCeEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDA----VLTVHWKRLGSAMP----------------------EDRMSVL------PSRSLQ  173 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~----------------------~~~~~~~------~~~~l~  173 (216)
                      ....+.+|+++.|.|.....+    ...+.|++......                      .++....      ....|.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            335778999999999975432    23588986322110                      0111211      123699


Q ss_pred             EecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573          174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQ  205 (216)
Q Consensus       174 i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~  205 (216)
                      |.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999998888888888775

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.7e-09  Score=63.59  Aligned_cols=76  Identities=25%  Similarity=0.437  Sum_probs=51.8

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------------ccccCceEEEe---cCcEEEE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------------DFENSKRLRLV---DGTNLAI   84 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------------~~~~~~~~~~~---~~~~l~i   84 (216)
                      .+.+.|.+.++.+|++++|.|.+........+.||+..  .   .+             ......++...   ....|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            46678888999999999999987444444578999832  1   01             00111222222   1236999


Q ss_pred             cccCCCCCceEEEEEEc
Q psy573           85 QDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~  101 (216)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.87  E-value=1.3e-08  Score=60.61  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEe-------ccccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPI-------DFENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~-------~~~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.. .+.....+.||+..     +.+       ......++...   ....|+|.+++.+
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~   83 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQA-SQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE   83 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEeeCCEEEECCCCCEEEEEEe-cCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC
Confidence            34556778899999999999987 44444578899831     111       01112222221   1236999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|....
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.86  E-value=1.2e-08  Score=61.22  Aligned_cols=77  Identities=26%  Similarity=0.462  Sum_probs=51.9

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec----c------ccCceEE--Eec---CcEEEEcccC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----F------ENSKRLR--LVD---GTNLAIQDSR   88 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~----~------~~~~~~~--~~~---~~~l~i~~~~   88 (216)
                      .+...|..+.+.+|+.++|.|.. .......+.||+.  ++...    .      ....++.  ...   ...|.|.+++
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~-s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSF-TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ   80 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEE-SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEE-ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence            35677888999999999999987 4444557889983  21110    0      0011111  111   2379999999


Q ss_pred             CCCCceEEEEEEcCC
Q psy573           89 KTDDGRYQCVVKNVA  103 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~  103 (216)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          81 PGDSATYLCAVRPTS   95 (113)
T ss_dssp             GGGCEEEEEEEEESS
T ss_pred             CCCCcEEeEeEecCC
Confidence            999999999987544

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.86  E-value=1.4e-08  Score=61.09  Aligned_cols=76  Identities=16%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec----------cccCceEEEec---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID----------FENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~----------~~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      +...|..+.+.+|++|+|.|..........+.||+.  ++.   +.          .....+.....   ...|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            456677888999999999997533334456889983  211   10          00111122222   2369999999


Q ss_pred             CCCCceEEEEEEcC
Q psy573           89 KTDDGRYQCVVKNV  102 (216)
Q Consensus        89 ~~d~g~y~C~~~~~  102 (216)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999987654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.86  E-value=4.6e-09  Score=62.51  Aligned_cols=75  Identities=20%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec-------cccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~-------~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|+.++|.|..........+.||+.  ++   .+.       .....++...   ....|.|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            345677889999999999998622223446889984  21   110       1112222221   12369999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|.|....
T Consensus        84 sa~YyCa~~~   93 (108)
T d2fx7l1          84 FAVYYCQQYG   93 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             cEEEeeecCC
Confidence            9999998653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-08  Score=60.37  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=48.0

Q ss_pred             ccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCC--EE---e-------ccccCceEEEec-----CcEEEEcccCCCCC
Q psy573           31 PKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG--HP---I-------DFENSKRLRLVD-----GTNLAIQDSRKTDD   92 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~--~~---~-------~~~~~~~~~~~~-----~~~l~i~~~~~~d~   92 (216)
                      ++.+.+.+|++++|.|...... ....+.||+..  ..   +       .....++..+..     ..+|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            3457889999999999873232 23457899832  11   1       111223333321     13699999999999


Q ss_pred             ceEEEEEEcCCC
Q psy573           93 GRYQCVVKNVAG  104 (216)
Q Consensus        93 g~y~C~~~~~~~  104 (216)
                      |.|.|.+.....
T Consensus        83 G~Y~C~v~~~~~   94 (108)
T d1hkfa_          83 GHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEEECTTT
T ss_pred             EEEEEEEecCCC
Confidence            999999886544

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.85  E-value=3.6e-09  Score=62.42  Aligned_cols=71  Identities=23%  Similarity=0.406  Sum_probs=46.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---ec-------cccCceEEE--e-cCcEEEEcccCCCCCce
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID-------FENSKRLRL--V-DGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~-------~~~~~~~~~--~-~~~~l~i~~~~~~d~g~   94 (216)
                      +|.++.+.+|++++|.|.. .......+.||+..  ..   +.       .....++..  . ....|.|.+++.+|+|.
T Consensus         4 Qp~sl~~~~G~svtl~C~~-~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   82 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSA-NALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEAD   82 (103)
T ss_dssp             CCSEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEE
T ss_pred             CCCeEEECCCCCEEEEEEe-CCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCce
Confidence            3557889999999999987 44444578999831  11   10       011112211  1 12479999999999999


Q ss_pred             EEEEEEc
Q psy573           95 YQCVVKN  101 (216)
Q Consensus        95 y~C~~~~  101 (216)
                      |.|....
T Consensus        83 YyCA~~~   89 (103)
T d8faba1          83 YYCQAWD   89 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecC
Confidence            9998654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.85  E-value=2.5e-08  Score=59.42  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=47.7

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec-------cccCceEEEec---CcEEEEcccCCCCCceE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVD---GTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~~---~~~l~i~~~~~~d~g~y   95 (216)
                      |.++.+.+|++++|.|..........+.||+.  ++.   +.       .....++....   ...|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            56789999999999998733334456889983  211   10       01112222221   23699999999999999


Q ss_pred             EEEEEcC
Q psy573           96 QCVVKNV  102 (216)
Q Consensus        96 ~C~~~~~  102 (216)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.85  E-value=1.9e-08  Score=59.78  Aligned_cols=75  Identities=21%  Similarity=0.312  Sum_probs=50.8

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-------ccccCceEEEe---cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLV---DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.. .......+.||+.  ++   .+       ......++...   ....|.|.+++.+
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~-s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRA-SENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE   81 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CEECcCCEEEECCCCCEEEEEEe-CCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence            34567888899999999999987 3344556899983  11   11       01112222222   1246999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCA~~~   92 (109)
T d1mqkl_          82 DFGSYYCQHHY   92 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeeEEEeeeC
Confidence            99999998754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.85  E-value=1.6e-08  Score=60.45  Aligned_cols=74  Identities=24%  Similarity=0.388  Sum_probs=49.0

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec---------cccCceEEEec---CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID---------FENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~---------~~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|++++|.|.. .......+.||+.  +.   .+.         ...........   ...|.|.+++.
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSY-ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP   80 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEE-CCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT
T ss_pred             cEecCCEEEEcCCCCEEEEEEe-cCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC
Confidence            4566888899999999999987 3334456899984  11   110         00011111111   23699999999


Q ss_pred             CCCceEEEEEEc
Q psy573           90 TDDGRYQCVVKN  101 (216)
Q Consensus        90 ~d~g~y~C~~~~  101 (216)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (110)
T d1u3ha1          81 GDSATYFCAASA   92 (110)
T ss_dssp             TSCSEEEECCEE
T ss_pred             CCceeEeeeecC
Confidence            999999998764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.7e-08  Score=58.40  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=51.8

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      |.+...|.. .+..|++|+|.|.. .......+.|+|+|.....   ..........+.|.+++.+|+|.|+|......
T Consensus         6 P~Lsa~P~~-~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~~~~---~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2           6 PFLSADRGL-VLMPGENISLTCSS-AHIPFDRFSLAKEGELSLP---QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             CEEEESSCS-EECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCC---SEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CEEEEeCCC-ccCCCCeEEEEEeC-CCCCceEEEEEECCcccce---EEcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence            556666644 68999999999975 2234457889998864311   11111234579999999999999999987543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.84  E-value=6.7e-09  Score=62.02  Aligned_cols=75  Identities=15%  Similarity=0.365  Sum_probs=50.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec----------cccCceEEE----ecCcEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID----------FENSKRLRL----VDGTNLAIQ   85 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~----------~~~~~~~~~----~~~~~l~i~   85 (216)
                      ..+...|....+.+|++++|.|.. .+ ....+.||+.  |+.   +.          .....++..    .....|+|.
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~-s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   79 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQ-TN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILE   79 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEE-SS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEES
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEE-CC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEEC
Confidence            356677888999999999999986 32 3457999983  211   10          000111111    122469999


Q ss_pred             ccCCCCCceEEEEEEc
Q psy573           86 DSRKTDDGRYQCVVKN  101 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~  101 (216)
                      +++.+|+|.|.|....
T Consensus        80 ~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          80 SATPSQTSVYFCASGG   95 (110)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             CCCHhhCEEEEEeeCC
Confidence            9999999999998764

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.3e-09  Score=63.63  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=53.8

Q ss_pred             ecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCCEE-----e-------ccccCceEEEec-----CcEEEEcccCC
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNGHP-----I-------DFENSKRLRLVD-----GTNLAIQDSRK   89 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~~~-----~-------~~~~~~~~~~~~-----~~~l~i~~~~~   89 (216)
                      ..|+.+.+.+|++++|.|....+.  ....+.||+....     +       .....++..+..     ..+|.|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            467788999999999999873221  2346789884211     1       111222332221     13799999999


Q ss_pred             CCCceEEEEEEcCCCCcccceeEEEEee
Q psy573           90 TDDGRYQCVVKNVAGTRESTDAVLRVLV  117 (216)
Q Consensus        90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~  117 (216)
                      +|+|.|.|.+....... ...+.|.|..
T Consensus        84 ~DsG~Y~C~v~~~~~~~-~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGL-SFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCC-EEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCc-eEeEEEEEEC
Confidence            99999999986433222 2234555543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.82  E-value=2.8e-08  Score=59.30  Aligned_cols=76  Identities=18%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             eEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeC--CE--EeccccCceEEE--ec---CcEEEEcccCCCCCceEE
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKN--GH--PIDFENSKRLRL--VD---GTNLAIQDSRKTDDGRYQ   96 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~--~~--~~~~~~~~~~~~--~~---~~~l~i~~~~~~d~g~y~   96 (216)
                      +...|..+.+.+|+.++|.|..... .....+.||+.  ++  .......+++..  ..   ...|+|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            5567888899999999999976222 24467899983  11  111122222222  22   137999999999999999


Q ss_pred             EEEEcC
Q psy573           97 CVVKNV  102 (216)
Q Consensus        97 C~~~~~  102 (216)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            987654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-09  Score=65.24  Aligned_cols=83  Identities=23%  Similarity=0.332  Sum_probs=53.0

Q ss_pred             ceEEecCCcEEEEeeCCCC---CCCCeeEEeeCCE----------------Ee---ccccCceEEEec------CcEEEE
Q psy573           33 SQRVAAGDTALLECGPPRG---HPEPTLVWKKNGH----------------PI---DFENSKRLRLVD------GTNLAI   84 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~~~----------------~~---~~~~~~~~~~~~------~~~l~i   84 (216)
                      .+.+.+|++++|+|.+...   .....+.|++...                ..   .....++..+..      +.+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            3678899999999986211   1224688987311                00   012233444432      247999


Q ss_pred             cccCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573           85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL  116 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~  116 (216)
                      .+++.+|+|.|.|.+.+..+.. ...+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            9999999999999998765533 444555553

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.81  E-value=1.3e-08  Score=59.37  Aligned_cols=75  Identities=16%  Similarity=0.229  Sum_probs=50.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |.+...|. ..+..|++|+|.|..  ..+...+.|||+|..................+.|..+...|+|.|+|.....
T Consensus         7 PsLsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           7 PSLSAQPG-PTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CEEEEESC-SEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CEEEEeCC-CcccCCCeEEEEECC--CCCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            55556664 467899999999986  4456689999987643211111111112235788888899999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.81  E-value=2.8e-08  Score=59.80  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEe----cc-------ccCceEEEe--c---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----DF-------ENSKRLRLV--D---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~----~~-------~~~~~~~~~--~---~~~l~i~~~~   88 (216)
                      +...|..+.+.+|++|+|.|..........+.||+..  +..    ..       ....++...  .   ...|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            4566778899999999999976334444568899831  111    00       011122221  1   2369999999


Q ss_pred             CCCCceEEEEEEcCC
Q psy573           89 KTDDGRYQCVVKNVA  103 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~  103 (216)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999987543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.80  E-value=3.8e-09  Score=62.70  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EEe----------ccccCceEE--Ee-cCcEEEEcccCCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----------DFENSKRLR--LV-DGTNLAIQDSRKT   90 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~~----------~~~~~~~~~--~~-~~~~l~i~~~~~~   90 (216)
                      .+...|..+.+.+|++++|.|.. .......+.||+..  +..          ......++.  .. ....|.|.+++.+
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   81 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRA-SQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE   81 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC
T ss_pred             CEECcCCEEEECCCCCEEEEEEc-CCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec
Confidence            34567888889999999999986 44445568999831  111          001111111  11 2247999999999


Q ss_pred             CCceEEEEEE
Q psy573           91 DDGRYQCVVK  100 (216)
Q Consensus        91 d~g~y~C~~~  100 (216)
                      |+|.|.|...
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.80  E-value=3e-08  Score=59.36  Aligned_cols=76  Identities=20%  Similarity=0.335  Sum_probs=51.4

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeC--CEE--eccccCceEEEe--cC---cEEEEcccCCCCCceE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKN--GHP--IDFENSKRLRLV--DG---TNLAIQDSRKTDDGRY   95 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~--~~~--~~~~~~~~~~~~--~~---~~l~i~~~~~~d~g~y   95 (216)
                      .+...|.++.+.+|++++|.|.+... .....+.||+.  +..  ......+++...  ..   ..|+|.+++.+|+|.|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            45677888999999999999976222 24457899973  211  111222222222  11   3699999999999999


Q ss_pred             EEEEEc
Q psy573           96 QCVVKN  101 (216)
Q Consensus        96 ~C~~~~  101 (216)
                      +|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            999864

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.80  E-value=4.7e-08  Score=58.22  Aligned_cols=75  Identities=20%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCC---CCCCeeEEeeC--CE---Ee-------ccccCceEEEe---cCcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKN--GH---PI-------DFENSKRLRLV---DGTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~~~--~~---~~-------~~~~~~~~~~~---~~~~l~i~~~~   88 (216)
                      +...|..+.+.+|++|+|.|....+   .....+.||+.  +.   .+       ......++...   ....|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            4567888899999999999975222   22234889984  11   11       01112233322   22479999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|.|....
T Consensus        84 ~~DsA~YyCa~~~   96 (111)
T d2gsia1          84 EEDAATYYCSHIR   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCceEEEEECC
Confidence            9999999998654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.79  E-value=2.4e-08  Score=59.61  Aligned_cols=75  Identities=23%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCC---CCCeeEEeeC--CEE---e-------ccccCceEEEec---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGH---PEPTLVWKKN--GHP---I-------DFENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~---~~~~~~W~~~--~~~---~-------~~~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      +...|..+.+.+|+.++|.|....+.   ....+.||+.  ++.   +       ......++....   ...|.|.+++
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   83 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence            34667788899999999999752221   2335899983  221   1       011122233222   2379999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|+|.|.|....
T Consensus        84 ~~Dsa~YyCa~~~   96 (111)
T d1j05a_          84 ADDVATYYCQQTN   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCccEEEeecC
Confidence            9999999998654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.9e-08  Score=58.14  Aligned_cols=73  Identities=22%  Similarity=0.387  Sum_probs=49.7

Q ss_pred             ceEEecCCcEEEEeeCCCCCC---CCeeEEeeCCEEecc----------ccCceEEEe--cCcEEEEcccCCCCCceEEE
Q psy573           33 SQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDF----------ENSKRLRLV--DGTNLAIQDSRKTDDGRYQC   97 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~----------~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C   97 (216)
                      .+.+..|+.++|+|.......   ...+.|.+++..+..          ...++....  ++.+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            357889999999998732221   146788887765411          122233333  24589999999999999999


Q ss_pred             EEEcCCCC
Q psy573           98 VVKNVAGT  105 (216)
Q Consensus        98 ~~~~~~~~  105 (216)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            99865443

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.79  E-value=1.3e-08  Score=61.17  Aligned_cols=75  Identities=13%  Similarity=0.215  Sum_probs=50.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec-------cccCceEEEe-----cCcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~-------~~~~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      +.+.|..+.+.+|++++|.|.. .......+.||+..  +   .+.       .....++...     ....|.|.+++.
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~-~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTY-QSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL   82 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEE-ECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEE-eCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc
Confidence            4566777899999999999987 44455679999842  1   110       0111222222     123599999999


Q ss_pred             CCCceEEEEEEcC
Q psy573           90 TDDGRYQCVVKNV  102 (216)
Q Consensus        90 ~d~g~y~C~~~~~  102 (216)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          83 SDSALYYCALFLA   95 (115)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             ccCccceEEEEcC
Confidence            9999999987654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6e-09  Score=60.43  Aligned_cols=74  Identities=16%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+...|. ..+..|++|+|.|..  ..+...+.+|+++..................+.|.+++.+|+|.|+|....
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeECC-CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            44555554 457899999999986  345567888998764321111111112346899999999999999998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.77  E-value=8.3e-08  Score=57.23  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec-------cccCceEEE--ec---CcEEEEcccC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRL--VD---GTNLAIQDSR   88 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~-------~~~~~~~~~--~~---~~~l~i~~~~   88 (216)
                      .+...|.++.+.+|+.++|.|.. .......+.||+.  ++   .+.       .....++..  ..   ...|.|.+++
T Consensus         2 ~v~Q~p~s~~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (111)
T d1bd2d1           2 QVKQNSPSLSVQEGRISILNCDY-TNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ   80 (111)
T ss_dssp             CEECCCSEEEEETTSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             ceEccCCEEEEcCCCCEEEEEEe-CCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc
Confidence            35567888899999999999986 4444557889983  21   110       001111211  11   2379999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999998764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.1e-08  Score=57.30  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      .+|.+...+. ..+..|++++|.|.........+.|+|++...............+.|.++..+|+|.|.|.....
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            3566666654 47899999999998644444579999998654433222223356899999999999999987643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.76  E-value=2.6e-08  Score=59.91  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec----------cccCceEEEec---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID----------FENSKRLRLVD---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~----------~~~~~~~~~~~---~~~l~i~~~~   88 (216)
                      +...|..+.+.+|++++|.|.. .......+.||+.  ++   .+.          .....+.....   ...|.|.+++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~-~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH   81 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEE-cCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence            4455667899999999999986 3334557889972  21   110          01111111111   2369999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          82 WSDSAVYFCAVSG   94 (115)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccceecccccC
Confidence            9999999998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=9e-08  Score=57.38  Aligned_cols=74  Identities=18%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---e---------ccccCceEEEec---CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---I---------DFENSKRLRLVD---GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~---------~~~~~~~~~~~~---~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|++++|.|.. .+ ....+.||+.  |+.   +         ............   ...|.|.+++.
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~-s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNS-SS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP   80 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEEC-SS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred             eEeCCCeEEECCCCCEEEEEEE-CC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence            4456778899999999999987 33 3457899983  111   1         001111112221   23699999999


Q ss_pred             CCCceEEEEEEcC
Q psy573           90 TDDGRYQCVVKNV  102 (216)
Q Consensus        90 ~d~g~y~C~~~~~  102 (216)
                      +|+|.|+|.....
T Consensus        81 ~Dsa~YyCa~~~~   93 (115)
T d1ogad1          81 GDTGLYLCAGAGS   93 (115)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             cceeeEcccccCC
Confidence            9999999987643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.8e-08  Score=61.27  Aligned_cols=73  Identities=25%  Similarity=0.383  Sum_probs=48.8

Q ss_pred             ccceEEecCCcEEEEeeCCC--C----CCCCeeEEeeCCEEe---------------ccccCceEEEec-----CcEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPR--G----HPEPTLVWKKNGHPI---------------DFENSKRLRLVD-----GTNLAI   84 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~--~----~~~~~~~W~~~~~~~---------------~~~~~~~~~~~~-----~~~l~i   84 (216)
                      |.++++.+|+.|+|+|....  .    .....+.||+....-               .....+++.+..     +.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            55789999999999997511  1    122467899853211               112234555543     347999


Q ss_pred             cccCCCCCceEEEEEEcCC
Q psy573           85 QDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+++.+|+|.|.|.+....
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCChHHCEEEEEEEEeCC
Confidence            9999999999999997543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=3.7e-08  Score=59.21  Aligned_cols=75  Identities=17%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Eec-c-------ccCceEEE--ec---CcEEEEcccC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-F-------ENSKRLRL--VD---GTNLAIQDSR   88 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~~-~-------~~~~~~~~--~~---~~~l~i~~~~   88 (216)
                      +...|..+.+.+|+.++|.|.. .......+.||+.  ++   .+. .       ....++..  ..   ...|.|.+++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNY-SSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH   81 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEe-CCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence            4556778899999999999987 3444557999983  11   110 0       00111111  11   2369999999


Q ss_pred             CCCCceEEEEEEcC
Q psy573           89 KTDDGRYQCVVKNV  102 (216)
Q Consensus        89 ~~d~g~y~C~~~~~  102 (216)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          82 MSDAAEYFCAVSES   95 (115)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             ccCCccceeeecCC
Confidence            99999999998754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.75  E-value=7.3e-08  Score=57.48  Aligned_cols=74  Identities=18%  Similarity=0.305  Sum_probs=47.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCC----CCCCeeEEeeCC--E---Ee-------ccccCceEEEec---CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNG--H---PI-------DFENSKRLRLVD---GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~~---~~~l~i~~~   87 (216)
                      ++..|.++.+.+|+.|+|.|....+    .....+.||+..  +   .+       ......++....   ...|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            3455778889999999999975221    224568999732  1   11       111122232221   236999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|++.|.|...
T Consensus        84 ~~~DsAvYyCa~~   96 (112)
T d1mjul1          84 EAEDVGVYYCLQH   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCceEEEEeC
Confidence            9999999999654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.75  E-value=4.8e-08  Score=58.36  Aligned_cols=72  Identities=21%  Similarity=0.369  Sum_probs=47.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d~g   93 (216)
                      +|+++.+.+|++++|.|...... ....+.||+..  .   .+       ......++...   ....|.|.+++.+|++
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence            34468899999999999873222 34578999842  1   11       01112222222   1247999999999999


Q ss_pred             eEEEEEEc
Q psy573           94 RYQCVVKN  101 (216)
Q Consensus        94 ~y~C~~~~  101 (216)
                      .|+|....
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.74  E-value=8.8e-08  Score=57.19  Aligned_cols=74  Identities=20%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCC----CCCCeeEEeeCC--E---Ee-------ccccCceEEEec---CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNG--H---PI-------DFENSKRLRLVD---GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~~---~~~l~i~~~   87 (216)
                      +...|..+.+.+|++++|.|....+    .....+.||+..  +   .+       ......++....   ...|+|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4566778899999999999975222    223468999831  1   11       111222332221   247999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|+|.|.|...
T Consensus        85 ~~~DsavYyCa~~   97 (113)
T d1n4xl_          85 EAEDLGIYYCFQG   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCEEEEEEEC
Confidence            9999999999654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.4e-08  Score=57.80  Aligned_cols=86  Identities=20%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee---eecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS---VLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      +|.+...+.. .+..|++|+|.|... .....+.|++++.........   ......+.|.++...|+|.|.|...+...
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            4556555544 578999999999974 345678999987542211000   11224699999999999999999877654


Q ss_pred             c--eEEEEEEEEE
Q psy573          195 K--ISASATLTVQ  205 (216)
Q Consensus       195 ~--~~~~~~l~v~  205 (216)
                      .  .+..+.|.|.
T Consensus        82 ~S~~Sd~leL~VT   94 (95)
T d1olla1          82 WSEPSNLLDLVVT   94 (95)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             ccCCCCCEEEEEe
Confidence            3  3444555553

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.73  E-value=1.1e-07  Score=56.68  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=49.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-----------ccccCceEEEec----CcEEEEcc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-----------DFENSKRLRLVD----GTNLAIQD   86 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-----------~~~~~~~~~~~~----~~~l~i~~   86 (216)
                      +...|....+.+|++++|.|.. .+ ....+.||+.  ++   .+           ......++....    ...|+|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~-~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   79 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDP-IS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQP   79 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEEC-CT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESS
T ss_pred             cEECCCEEEECCCCCEEEEEEE-CC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECC
Confidence            4566778899999999999986 32 3458999973  11   11           011122333322    14799999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|+|.|.|....
T Consensus        80 ~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          80 AELEDSGVYFCASSQ   94 (111)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             cccCCCceEEEeeeC
Confidence            999999999998653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.73  E-value=2.1e-07  Score=55.55  Aligned_cols=76  Identities=17%  Similarity=0.349  Sum_probs=50.0

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec--c-cc------CceEEEe-----cCcEEEEcccCC
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID--F-EN------SKRLRLV-----DGTNLAIQDSRK   89 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~--~-~~------~~~~~~~-----~~~~l~i~~~~~   89 (216)
                      .+...|..+.+.+|++++|.|.. .. ....+.||+.  +....  . ..      .......     ....|+|.+++.
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~-~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNF-TT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL   80 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEE-SS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEE-ec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH
Confidence            35667888899999999999987 33 3457899983  11110  0 00      0000111     113699999999


Q ss_pred             CCCceEEEEEEcCC
Q psy573           90 TDDGRYQCVVKNVA  103 (216)
Q Consensus        90 ~d~g~y~C~~~~~~  103 (216)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          81 EDSGTYFCAAEASS   94 (113)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             hHCEEEEEEecCCC
Confidence            99999999987543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.73  E-value=1e-07  Score=56.76  Aligned_cols=74  Identities=23%  Similarity=0.376  Sum_probs=47.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCC----CCCCCeeEEeeC--CEE---e-------ccccCceEEEe---cCcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPR----GHPEPTLVWKKN--GHP---I-------DFENSKRLRLV---DGTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~----~~~~~~~~W~~~--~~~---~-------~~~~~~~~~~~---~~~~l~i~~~   87 (216)
                      +...|.++.+.+|+.++|.|....    ......+.||+.  |+.   +       ......++...   .+..|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            446688889999999999997421    122346889974  111   1       11112223221   2236999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|+|.|+|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=4e-08  Score=58.34  Aligned_cols=71  Identities=17%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCC--CeeEEeeC---CEEe---------ccccCceEEEe---cCcEEEEcccCCCCCc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN---GHPI---------DFENSKRLRLV---DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~---~~~~---------~~~~~~~~~~~---~~~~l~i~~~~~~d~g   93 (216)
                      |.++.+.+|+.++|.|....+...  ..+.||+.   ..+.         ......++...   .+..|.|.+++.+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            447789999999999987323222  23889982   2211         01112233222   2347999999999999


Q ss_pred             eEEEEEEc
Q psy573           94 RYQCVVKN  101 (216)
Q Consensus        94 ~y~C~~~~  101 (216)
                      .|.|....
T Consensus        87 ~YyCa~~~   94 (110)
T d1oaql_          87 IYFCALWY   94 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEccc
Confidence            99998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.72  E-value=5.7e-08  Score=57.22  Aligned_cols=72  Identities=14%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      ++..|..+.+.+|++++|.|.. . .....+.||+..  .   .+       ......++...   ....|.|.+++.+|
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~-s-~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   80 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSA-S-SSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED   80 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEE-S-SCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEe-C-CCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence            3466788899999999999986 3 234467899842  1   11       01111222221   22479999999999


Q ss_pred             CceEEEEEE
Q psy573           92 DGRYQCVVK  100 (216)
Q Consensus        92 ~g~y~C~~~  100 (216)
                      +|.|.|...
T Consensus        81 sa~YyCa~~   89 (104)
T d1yqvl1          81 AATYYCQQW   89 (104)
T ss_dssp             CEEEEEEEC
T ss_pred             CCeEEEEec
Confidence            999999754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.1e-08  Score=57.86  Aligned_cols=76  Identities=8%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-----eeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-----SVLPSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      +|.+...+.. .+..|++++|.|.+. .+...+.|++++........     .......+.|.++...|+|.|.|...+.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            4666666654 688999999999875 44568999987753211110     0112356999999999999999999887


Q ss_pred             Ccc
Q psy573          193 VGK  195 (216)
Q Consensus       193 ~~~  195 (216)
                      ...
T Consensus        85 ~~~   87 (99)
T d1ucta1          85 HYR   87 (99)
T ss_dssp             TTE
T ss_pred             Ccc
Confidence            653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.71  E-value=2.2e-07  Score=55.43  Aligned_cols=73  Identities=22%  Similarity=0.365  Sum_probs=49.7

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CE---Ee-----------ccccCceEEEec----CcEEEEcc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-----------DFENSKRLRLVD----GTNLAIQD   86 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~---~~-----------~~~~~~~~~~~~----~~~l~i~~   86 (216)
                      +...|....+.+|++++|.|..  ......+.||+.  ++   .+           ......++....    ...|+|.+
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~--~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   79 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDP--ISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQR   79 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEEC--CTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESS
T ss_pred             eEECCCeEEECCCCCEEEEEEE--CCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECC
Confidence            4566778889999999999986  234468999983  11   11           011122232221    24699999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|+|.|.|....
T Consensus        80 ~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          80 TQQEDSAVYLCASSL   94 (112)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             CCcCCCEEEEEeeeC
Confidence            999999999998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.71  E-value=1e-07  Score=57.49  Aligned_cols=76  Identities=16%  Similarity=0.321  Sum_probs=51.9

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe---------------ccccCceEEEec--C--cEEEEc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI---------------DFENSKRLRLVD--G--TNLAIQ   85 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~--~--~~l~i~   85 (216)
                      +...|....+.+|++++|.|.. .+.....+.||+.  ++..               ......++....  +  ..|.|.
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRS-LDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEE-CSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             EEEcCCeEEEcCCCCEEEEEEE-cCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            5566777889999999999986 4445568999983  2211               001122333321  1  369999


Q ss_pred             ccCCCCCceEEEEEEcCC
Q psy573           86 DSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~~~  103 (216)
                      +++.+|+|.|.|......
T Consensus        83 ~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             SCCGGGCEEEEEEEECSS
T ss_pred             ccccccCceEEEEEecCC
Confidence            999999999999986543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=8.4e-08  Score=57.98  Aligned_cols=83  Identities=17%  Similarity=0.344  Sum_probs=52.4

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCC----CCcEEEEeeCCccC---------------------CCCCeeee-----cCCeE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGD----AVLTVHWKRLGSAM---------------------PEDRMSVL-----PSRSL  172 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~~~~---------------------~~~~~~~~-----~~~~l  172 (216)
                      ..+....+..|+++.|.|.....    ....+.|++....-                     ..++....     .+..|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            44566788899999999986322    23478998632100                     00122221     12469


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy573          173 QLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQ  205 (216)
Q Consensus       173 ~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~  205 (216)
                      .|.+++..|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999986543  4445666664

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=1e-07  Score=57.12  Aligned_cols=73  Identities=15%  Similarity=0.382  Sum_probs=51.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc--CC-------------CCCeeee-----cCCeEEEecCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--MP-------------EDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~--~~-------------~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      +...|....+.+|+.++|.|.........+.|++....  ..             ..+....     ...+|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            34456777899999999999987666667999974321  10             0111111     1235999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy573          181 DGGEYVCEAENAV  193 (216)
Q Consensus       181 d~g~y~C~~~n~~  193 (216)
                      |+|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.69  E-value=4.9e-08  Score=57.85  Aligned_cols=73  Identities=25%  Similarity=0.389  Sum_probs=48.3

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee-------ccccCceEEEe---cCcEEEEcccCCCCCc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI-------DFENSKRLRLV---DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d~g   93 (216)
                      .+|+++.+.+|++++|.|.. .......+.||+..  +   .+       ......++...   ....|.|.+++.+|+|
T Consensus         5 tQp~sl~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           5 TQPPSVSVAPGQTARITCGG-NNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             BCCSEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eeCCeEEECCCCCEEEEEEc-CCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE
Confidence            34557889999999999986 34344578999741  1   11       01112222221   1236999999999999


Q ss_pred             eEEEEEEcC
Q psy573           94 RYQCVVKNV  102 (216)
Q Consensus        94 ~y~C~~~~~  102 (216)
                      .|.|.....
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999987643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=9.4e-08  Score=57.95  Aligned_cols=74  Identities=23%  Similarity=0.391  Sum_probs=52.6

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccCCC-----------C------------Ceeee--cC-
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAMPE-----------D------------RMSVL--PS-  169 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~~-----------~------------~~~~~--~~-  169 (216)
                      +|.+...|....+.+|+++.|.|.+.+.....+.|++.  +..+..           .            +....  .+ 
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            36677778888999999999999987776777999872  221110           0            00000  11 


Q ss_pred             -CeEEEecCCCCCCeEEEEEEEc
Q psy573          170 -RSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       170 -~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                       .+|.|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence             2599999999999999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.69  E-value=2e-07  Score=55.73  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=49.6

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe-------------ccccCceEEEe-c---CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI-------------DFENSKRLRLV-D---GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~-------------~~~~~~~~~~~-~---~~~l~i~~~   87 (216)
                      +...|....+.+|++++|.|.. .+ ....+.||+.  ++..             ......++... .   ...|+|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~-~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSP-IS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTL   79 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEEC-ST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             eEeCCCeEEECCCCCEEEEEEE-CC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCC
Confidence            3456778899999999999986 33 3457899982  2211             01111222221 1   236999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          80 ELGDSALYLCASSLA   94 (113)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CcccceeeeeeeeCC
Confidence            999999999987643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.7e-07  Score=55.78  Aligned_cols=70  Identities=20%  Similarity=0.370  Sum_probs=43.7

Q ss_pred             eEEecCCcEEEEeeCCCCC--CCCee--EEeeCCEEe--------------ccccCceEEE-ecCcEEEEcccCCCCCce
Q psy573           34 QRVAAGDTALLECGPPRGH--PEPTL--VWKKNGHPI--------------DFENSKRLRL-VDGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~--~~~~~--~W~~~~~~~--------------~~~~~~~~~~-~~~~~l~i~~~~~~d~g~   94 (216)
                      +.+..|++++|+|.+....  +...+  .|.++....              ......+... .++.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            5678999999999873221  11223  344432211              0112223333 245689999999999999


Q ss_pred             EEEEEEcCC
Q psy573           95 YQCVVKNVA  103 (216)
Q Consensus        95 y~C~~~~~~  103 (216)
                      |.|.+....
T Consensus        84 Y~C~V~~~~   92 (110)
T d1ncna_          84 YQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999997443

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.4e-08  Score=58.59  Aligned_cols=85  Identities=18%  Similarity=0.316  Sum_probs=54.9

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCccC---------------CCCCeeee-----cCCeEEEecCCCC
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSAM---------------PEDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~---------------~~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      .|....+.+|+++.|.|......   ...+.|++....-               ...+....     ....|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45667888999999999864332   2357898743211               01122221     1136999999999


Q ss_pred             CCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573          181 DGGEYVCEAENAVGKISASATLTVQSKY  208 (216)
Q Consensus       181 d~g~y~C~~~n~~~~~~~~~~l~v~~~p  208 (216)
                      |+|.|.|.+..........+.|.|.+.+
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999999987554445556777777543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.5e-08  Score=56.18  Aligned_cols=70  Identities=16%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK  100 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  100 (216)
                      |.+...|. ..|..|++|+|.|..  ......+.|||+|......   .........+.|.+++.+|+|.|+|...
T Consensus         5 PsLsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~~---~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           5 PTLSVHPG-PEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ---RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CEEEEESC-SEEETTCEEEEEEEC--SSSCSEEEEEEESSSCEEE---EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CEEEEeCC-CcccCCCcEEEEECC--CCCCCEEEEEECCCcccee---ecCCCceeEEEecccChhcCceEEEEeE
Confidence            55556664 458899999999986  4456688999986533111   1111123579999999999999999744

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.67  E-value=2.3e-07  Score=55.49  Aligned_cols=74  Identities=16%  Similarity=0.311  Sum_probs=49.3

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec----------cccCceEEEe----cCcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID----------FENSKRLRLV----DGTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~----------~~~~~~~~~~----~~~~l~i~~~   87 (216)
                      +...|..+.+.+|++++|.|.. . .....+.||+.  ++.   +.          .....++...    ....|+|.++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~-s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   79 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEE-e-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcC
Confidence            3456778899999999999987 3 34558999983  111   10          0011111111    1236999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      ..+|+|.|.|.....
T Consensus        80 ~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          80 QKNPTAFYLCASSSR   94 (114)
T ss_dssp             CSCCCEEEEEEEESS
T ss_pred             CcCCceeEEEeeccC
Confidence            999999999987644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.66  E-value=8.6e-08  Score=57.28  Aligned_cols=75  Identities=20%  Similarity=0.374  Sum_probs=48.1

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCC-----CCCCeeEEeeC--CEE---e-------ccccCceEEEe---cCcEEEEc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRG-----HPEPTLVWKKN--GHP---I-------DFENSKRLRLV---DGTNLAIQ   85 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~-----~~~~~~~W~~~--~~~---~-------~~~~~~~~~~~---~~~~l~i~   85 (216)
                      .++..|..+.+.+|++++|.|.....     .....+.||+.  ++.   +       ......++...   ....|.|.
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~   82 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT   82 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence            34567888899999999999975221     11235889983  211   1       11111222221   12369999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|+|.|.|...
T Consensus        83 ~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQS   97 (113)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCCCeEEEeccc
Confidence            999999999999864

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.63  E-value=1.6e-07  Score=55.91  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCC-----EEec-------cccCceEEEe---cCcEEEEcccCCCCCc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG-----HPID-------FENSKRLRLV---DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~-----~~~~-------~~~~~~~~~~---~~~~l~i~~~~~~d~g   93 (216)
                      +|.++.+.+|+.++|.|....+. ....+.||+..     ..+.       .....++...   ....|.|.+++.+|+|
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            45578999999999999873222 23468999731     1110       1112222222   1247999999999999


Q ss_pred             eEEEEEEcC
Q psy573           94 RYQCVVKNV  102 (216)
Q Consensus        94 ~y~C~~~~~  102 (216)
                      .|.|.....
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.62  E-value=7.9e-08  Score=57.31  Aligned_cols=73  Identities=19%  Similarity=0.341  Sum_probs=47.2

Q ss_pred             ecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCC--EEe----------ccccCceEEEe--c---CcEEEEcccCCC
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG--HPI----------DFENSKRLRLV--D---GTNLAIQDSRKT   90 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~--~~~----------~~~~~~~~~~~--~---~~~l~i~~~~~~   90 (216)
                      .+|.++.+.+|++++|.|...... ....+.||+..  +..          .....+++...  .   ...|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            347778999999999999862222 22358999842  111          01122233222  1   237999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|....
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999998654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.61  E-value=1.5e-07  Score=56.38  Aligned_cols=73  Identities=19%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee-----cCCeEEEecCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      +...+....+.+|++++|.|.........+.|++...  .+             ...+....     ....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            3455667789999999999998666666799987421  11             01111111     1235999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy573          181 DGGEYVCEAENAV  193 (216)
Q Consensus       181 d~g~y~C~~~n~~  193 (216)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999886543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.61  E-value=4.7e-07  Score=53.92  Aligned_cols=73  Identities=16%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEe-------------ccccCceEEEe-c---CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI-------------DFENSKRLRLV-D---GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~-------------~~~~~~~~~~~-~---~~~l~i~~~   87 (216)
                      +...|....+.+|++++|.|.. . .....+.||+.  ++..             ......++... .   +..|.|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~-s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQ-D-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSA   79 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEE-S-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEE-E-CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCC
Confidence            4566777889999999999986 2 23457999983  2111             00111111111 1   236999999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      ..+|+|.|.|....
T Consensus        80 ~~~DsavYyCA~~~   93 (112)
T d2bnub1          80 APSQTSVYFCASSY   93 (112)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHHHCEEEEEeecC
Confidence            99999999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.5e-07  Score=53.61  Aligned_cols=76  Identities=13%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE---ecCcEEEEcccCCCCCceEEEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+...|.. .+..|++|+|.|..  ......+.+||++.............   .....+.|.++..+|+|.|+|....
T Consensus         5 PsLsa~P~~-~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           5 PTLSAQPSP-VVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CEEEeeCCC-ccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            555566644 58899999999986  44566888888876542111100000   1124699999999999999998865


Q ss_pred             CC
Q psy573          102 VA  103 (216)
Q Consensus       102 ~~  103 (216)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.8e-08  Score=58.09  Aligned_cols=71  Identities=11%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             EEecCCcEEEEeeCCCCCCCC--eeEEeeCCEEeccccCceEE-----EecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           35 RVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLR-----LVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      .+.+|+.++|.|.+..+.|..  .+.|++++..+.........     ......|.+.....++...|+|++.+..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            478999999999986666754  68999998877421111000     011134666655555555799999977543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.59  E-value=2.3e-07  Score=55.41  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=50.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--E---Ee----------ccccCceEEEe----cCcEEEEc
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PI----------DFENSKRLRLV----DGTNLAIQ   85 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~----------~~~~~~~~~~~----~~~~l~i~   85 (216)
                      +.+...|..+.+.+|+.++|.|.. .. ....+.||+..  +   .+          ......++...    ....|+|.
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~-~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   79 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS   79 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEEC-CT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECC
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEe-CC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEec
Confidence            456677888899999999999986 22 34579999842  1   11          00011111111    12369999


Q ss_pred             ccCCCCCceEEEEEEc
Q psy573           86 DSRKTDDGRYQCVVKN  101 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~  101 (216)
                      +++.+|+|.|.|....
T Consensus        80 ~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          80 ALELEDSAMYFCASSL   95 (113)
T ss_dssp             SCCGGGCEEECEEEES
T ss_pred             ccCcCCceeEEEEeec
Confidence            9999999999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=2.5e-07  Score=54.68  Aligned_cols=70  Identities=21%  Similarity=0.433  Sum_probs=49.2

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            455677789999999999998766556799997421  11             01111111   2245999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99998754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.59  E-value=1.1e-07  Score=56.25  Aligned_cols=71  Identities=21%  Similarity=0.390  Sum_probs=47.8

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec-------cccCceEEEe---cCcEEEEcccCCCCCce
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLV---DGTNLAIQDSRKTDDGR   94 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~-------~~~~~~~~~~---~~~~l~i~~~~~~d~g~   94 (216)
                      +|.++.+.+|++++|.|.. .......+.||+.  |+.   +.       .....++...   ....|.|.+++.+|+|.
T Consensus         5 QP~s~~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CCCeeEECCCCCEEEEEEC-CCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence            4777889999999999986 3334446889983  211   10       1112233222   12479999999999999


Q ss_pred             EEEEEEc
Q psy573           95 YQCVVKN  101 (216)
Q Consensus        95 y~C~~~~  101 (216)
                      |.|....
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.2e-08  Score=56.67  Aligned_cols=63  Identities=22%  Similarity=0.504  Sum_probs=44.5

Q ss_pred             eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---------------CCCeeee------cCCeEEEecCCCCCCeEEEE
Q psy573          129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVL------PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---------------~~~~~~~------~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ...+|+++.|.|.........+.|++......               ..+....      .+.+|.|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            56689999999998766667899987543110               0011110      12369999999999999999


Q ss_pred             EEEc
Q psy573          188 EAEN  191 (216)
Q Consensus       188 ~~~n  191 (216)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            9965

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.58  E-value=1.1e-07  Score=56.70  Aligned_cols=73  Identities=15%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec----------cccCceEEEecC---cEEEEcccCCCCCc
Q psy573           29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDG---TNLAIQDSRKTDDG   93 (216)
Q Consensus        29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~g   93 (216)
                      ..|..+.+.+|++++|.|..........+.||+.  ++...          .....++....+   ..|+|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            4577788999999999998632333445899983  21110          111223333222   36999999999999


Q ss_pred             eEEEEEEc
Q psy573           94 RYQCVVKN  101 (216)
Q Consensus        94 ~y~C~~~~  101 (216)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.57  E-value=6.6e-07  Score=53.37  Aligned_cols=74  Identities=12%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec-------------cccCceEEEec----CcEEEEccc
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID-------------FENSKRLRLVD----GTNLAIQDS   87 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~-------------~~~~~~~~~~~----~~~l~i~~~   87 (216)
                      +...|..+.+.+|++++|.|.. . .....+.||+.  |+...             .....+.....    ...|.|.++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~-~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQ-D-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEE-S-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEE-c-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC
Confidence            5567888899999999999975 2 33457899983  21110             01111222211    236999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          81 STNQTSMYLCASSST   95 (113)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCcccEEeeEccC
Confidence            999999999998643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.4e-07  Score=56.74  Aligned_cols=74  Identities=22%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             cccceEEecCCcEEEEeeCCC--C---CCCCeeEEeeCCE----Ee---------ccccCceEEEec-----CcEEEEcc
Q psy573           30 QPKSQRVAAGDTALLECGPPR--G---HPEPTLVWKKNGH----PI---------DFENSKRLRLVD-----GTNLAIQD   86 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~--~---~~~~~~~W~~~~~----~~---------~~~~~~~~~~~~-----~~~l~i~~   86 (216)
                      .|..+.+.+|+.|+|+|.+..  .   .....+.|++...    .+         ......++.+..     +.+|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            466788999999999998521  1   1123456776421    11         112334444432     34799999


Q ss_pred             cCCCCCceEEEEEEcCC
Q psy573           87 SRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~~~  103 (216)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997644

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.8e-08  Score=58.52  Aligned_cols=70  Identities=20%  Similarity=0.346  Sum_probs=44.9

Q ss_pred             eEEecCCcEEEEeeCCCC-CCCCeeEEeeC--CE---Eec----------cccCceEEEec---C--cEEEEcccCCCCC
Q psy573           34 QRVAAGDTALLECGPPRG-HPEPTLVWKKN--GH---PID----------FENSKRLRLVD---G--TNLAIQDSRKTDD   92 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~--~~---~~~----------~~~~~~~~~~~---~--~~l~i~~~~~~d~   92 (216)
                      ..+.+|++++|.|.+... .....+.||+.  +.   .+.          ....+++.+..   .  ..|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            567899999999987211 23456889983  11   110          01112333322   1  3599999999999


Q ss_pred             ceEEEEEEcCC
Q psy573           93 GRYQCVVKNVA  103 (216)
Q Consensus        93 g~y~C~~~~~~  103 (216)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999986543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.57  E-value=2.8e-07  Score=54.95  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC--E---Eec-------cccCceEEEe---cCcEEEEcccCCCCCc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-------FENSKRLRLV---DGTNLAIQDSRKTDDG   93 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~--~---~~~-------~~~~~~~~~~---~~~~l~i~~~~~~d~g   93 (216)
                      |.++.+.+|++++|.|....+.  ....+.||+..  +   .+.       .....++...   ....|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            6778999999999999873322  23458999832  1   110       0111122111   2346999999999999


Q ss_pred             eEEEEEEcC
Q psy573           94 RYQCVVKNV  102 (216)
Q Consensus        94 ~y~C~~~~~  102 (216)
                      .|+|.....
T Consensus        87 ~YyCa~~~~   95 (112)
T d1lgva1          87 DYYCSSYDG   95 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecC
Confidence            999987653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=3.7e-07  Score=53.84  Aligned_cols=71  Identities=20%  Similarity=0.333  Sum_probs=49.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            455677889999999999998765555799998421  11             01122222   2246999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (107)
T d1ospl1          85 TYFCQQYWS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             cEEEeeccC
Confidence            999987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=1e-07  Score=56.20  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.++..+|+|
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence            445667788999999999998655555699987421  10             01122221   2246999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|.+.+.
T Consensus        84 ~YyCa~~~~   92 (106)
T d1a0ql1          84 TYYCLQYYN   92 (106)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEEeCC
Confidence            999987643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.56  E-value=2.6e-07  Score=54.89  Aligned_cols=75  Identities=15%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEE---ec-c------ccCceEEEe--c---CcEEEEcccCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-F------ENSKRLRLV--D---GTNLAIQDSRK   89 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~---~~-~------~~~~~~~~~--~---~~~l~i~~~~~   89 (216)
                      +...|..+.+.+|+.++|.|.. .......+.||+.  |+.   +. .      ....++...  .   ...|.|.++..
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNY-SASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEE-ECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             eEeCCCeEEECCCCCEEEEEEe-cCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            5567788899999999999976 3334457999983  211   10 0      011122221  1   23699999999


Q ss_pred             CCCceEEEEEEcC
Q psy573           90 TDDGRYQCVVKNV  102 (216)
Q Consensus        90 ~d~g~y~C~~~~~  102 (216)
                      +|+|.|.|.....
T Consensus        82 ~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          82 SDSAVYYCALSGG   94 (110)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCcccceeecCC
Confidence            9999999987643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.55  E-value=2.5e-07  Score=55.29  Aligned_cols=73  Identities=19%  Similarity=0.452  Sum_probs=51.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------------CCCeeee-----cCCeEEEecCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------------EDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------------~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      +...|....+.+|+.+.|.|...+.....+.|++..  ..+.             ..+....     ....|.|.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            445667788999999999999876666679999843  1110             0111111     1136999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy573          181 DGGEYVCEAENAV  193 (216)
Q Consensus       181 d~g~y~C~~~n~~  193 (216)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987544

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=1.1e-07  Score=56.06  Aligned_cols=70  Identities=20%  Similarity=0.350  Sum_probs=48.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|++++|.|.........+.|++..  ..+             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            34566678889999999999876666679999742  211             01111111   2246999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99998754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9.5e-08  Score=54.80  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEE
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  190 (216)
                      .+|.+...|. ..+..|++++|.|... .....+.|+|++...............+.|.++...|+|.|+|...
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            3455655554 4688999999999974 3456799999876533221111123569999999999999999743

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.55  E-value=2.8e-07  Score=53.13  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=49.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE--ecCcEEEEcccCCCCCceEEEEEEcC
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--VDGTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |.+...| ...+..|++|+|.|..  ......+.+||++.............  .....+.|.+++.+|+|.|+|.....
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeC-CCccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4444555 4568899999999986  44556888999765321000000000  11246999999999999999987654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=6.3e-07  Score=48.72  Aligned_cols=82  Identities=17%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             eEEecCCcEEEEeeCCCCCCCCeeEEeeCCE----EeccccCceEEEecC-----cEEEEcccCCCCCceEEEEEEcCCC
Q psy573           34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGH----PIDFENSKRLRLVDG-----TNLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      ..+..|+.+.|.|.+..-...|+++|-|-+.    ++............+     ..|++..+..+|.|.|+|.+.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            5788999999999986556778999987432    221111111111111     2599999999999999999987666


Q ss_pred             CcccceeEEEE
Q psy573          105 TRESTDAVLRV  115 (216)
Q Consensus       105 ~~~~~~~~l~v  115 (216)
                      ...+.++++.|
T Consensus        93 vieSHSvti~V  103 (104)
T d1xaua_          93 VINSHSVTIHV  103 (104)
T ss_dssp             EEECCCEEEEE
T ss_pred             heecceEEEEe
Confidence            55455555443

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.5e-07  Score=56.63  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC-----EEe-------ccccCceEEEe---cCcEEEEcccCCCC
Q psy573           27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPI-------DFENSKRLRLV---DGTNLAIQDSRKTD   91 (216)
Q Consensus        27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~-----~~~-------~~~~~~~~~~~---~~~~l~i~~~~~~d   91 (216)
                      +...|..+.+.+|++++|.|.. .......+.||+..     ..+       ......++...   ....|.|.+++.+|
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED   82 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred             EEccCCEEEECCCCCEEEEEEe-CCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence            4456777889999999999987 44344568999841     111       01112222211   12369999999999


Q ss_pred             CceEEEEEEc
Q psy573           92 DGRYQCVVKN  101 (216)
Q Consensus        92 ~g~y~C~~~~  101 (216)
                      +|.|+|....
T Consensus        83 savYyCa~~~   92 (119)
T d1f3rb2          83 VATYFCYQYN   92 (119)
T ss_dssp             CSEEEEEEES
T ss_pred             CeEEEeeccC
Confidence            9999997653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.50  E-value=3.2e-07  Score=54.11  Aligned_cols=71  Identities=23%  Similarity=0.387  Sum_probs=49.3

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDG  182 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~  182 (216)
                      +...|..+.+.+|+.++|.|.........+.|++...  .+             ...+....   ....|.|.+++++|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            3455677788999999999998765566788987432  11             01122221   123599999999999


Q ss_pred             eEEEEEEEc
Q psy573          183 GEYVCEAEN  191 (216)
Q Consensus       183 g~y~C~~~n  191 (216)
                      |.|.|...+
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999997654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=6.8e-07  Score=53.38  Aligned_cols=72  Identities=28%  Similarity=0.470  Sum_probs=49.2

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCC--ccC--------------CCCCeeeec-----CCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLG--SAM--------------PEDRMSVLP-----SRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~--~~~--------------~~~~~~~~~-----~~~l~i~~~~~  179 (216)
                      ...|..+.+.+|+++.|.|..... ....+.|++..  ..+              ...+.....     ...|.|.+++.
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence            445677889999999999998543 34568999732  111              111222221     13499999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy573          180 EDGGEYVCEAENAV  193 (216)
Q Consensus       180 ~d~g~y~C~~~n~~  193 (216)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          83 NDSGIYLCGAISLH   96 (114)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             CCCeEEEEEEEeCC
Confidence            99999999987543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.5e-06  Score=51.38  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             ceeEeCCCcEEEEEEeCCC--CCcEEEEeeCCc--c-------------CCCCCeeee-----cCCeEEEecCCCCCCeE
Q psy573          127 DTTVSAGSIIVFECSVGGD--AVLTVHWKRLGS--A-------------MPEDRMSVL-----PSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~--~-------------~~~~~~~~~-----~~~~l~i~~~~~~d~g~  184 (216)
                      .+.+.+|+++.|.|.....  ....+.|++...  .             ....+....     ....|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            3577899999999986433  234578987321  0             011222221     11359999999999999


Q ss_pred             EEEEEEcCCc
Q psy573          185 YVCEAENAVG  194 (216)
Q Consensus       185 y~C~~~n~~~  194 (216)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9999875543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=4.3e-07  Score=53.61  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=49.1

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            345667789999999999998655556799987432  11             00111111   2246999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1j1pl_          85 MYFCQQANS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEcCCC
Confidence            999977543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.49  E-value=5.4e-07  Score=53.96  Aligned_cols=70  Identities=20%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCc-----c------------------CCCCCeeee-----cCCeEE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGS-----A------------------MPEDRMSVL-----PSRSLQ  173 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~-----~------------------~~~~~~~~~-----~~~~l~  173 (216)
                      ..|....+.+|+.+.|.|...+. ....+.|++...     .                  +...+....     ....|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            34566789999999999998653 445689987421     0                  111121111     124699


Q ss_pred             EecCCCCCCeEEEEEEEcC
Q psy573          174 LSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       174 i~~~~~~d~g~y~C~~~n~  192 (216)
                      |.+++.+|+|.|.|.+...
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             ECSCCGGGCEEEEEEEECS
T ss_pred             ecccCCCCCcEEEEeEcCC
Confidence            9999999999999987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.49  E-value=8e-07  Score=53.23  Aligned_cols=74  Identities=27%  Similarity=0.436  Sum_probs=50.2

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeC--CccC----------------CCCCeeee---cC--CeEEEec
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRL--GSAM----------------PEDRMSVL---PS--RSLQLSD  176 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~--~~~~----------------~~~~~~~~---~~--~~l~i~~  176 (216)
                      +...+....+.+|++++|.|..... ....+.|++.  +..+                ...+....   ..  ..|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            4556777889999999999987433 4567899872  2111                01122221   11  3589999


Q ss_pred             CCCCCCeEEEEEEEcCCc
Q psy573          177 VRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       177 ~~~~d~g~y~C~~~n~~~  194 (216)
                      ++.+|+|.|.|.+....+
T Consensus        83 ~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             CCGGGCEEEEEEEECTTT
T ss_pred             ccccccccceeeEecCCC
Confidence            999999999998876543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.48  E-value=6e-07  Score=54.07  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=50.5

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC-CCCeeEEeeC--CEE---e-------ccccCceEEEec-----CcEEEEccc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--GHP---I-------DFENSKRLRLVD-----GTNLAIQDS   87 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~--~~~---~-------~~~~~~~~~~~~-----~~~l~i~~~   87 (216)
                      .+..++..+.+.+|++++|.|.+.... ....+.||+.  |+.   +       .....+++....     ...|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            345566778899999999999873222 2356899983  211   1       111123333221     147999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      +.+|+|.|.|.....
T Consensus        83 ~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          83 SERDEGSYYCACDTL   97 (120)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             cccCCceeecCcccC
Confidence            999999999987653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.9e-07  Score=54.05  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             eEeCCCcEEEEEEeCC-CCC--cEEEEeeCCccCCCCCe--------eeecCCeEEEecCCCCCCeEEEEEEEcCCcc--
Q psy573          129 TVSAGSIIVFECSVGG-DAV--LTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDGGEYVCEAENAVGK--  195 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~-~p~--~~i~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~--  195 (216)
                      .+.+|+.+.|.|.+.+ .|.  +.+.|++++..+.....        .....+.|.+.....+++..|+|.|.|..+.  
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence            4678999999999854 564  36999998875431100        0111234555544444455999999988643  


Q ss_pred             -----eEEEEEEEEEecc
Q psy573          196 -----ISASATLTVQSKY  208 (216)
Q Consensus       196 -----~~~~~~l~v~~~p  208 (216)
                           ...+..|.|...|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                 2334556666554

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=6.6e-07  Score=52.77  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=48.6

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---------------CCCeeeec---CCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVLP---SRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---------------~~~~~~~~---~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|+++.|.|.........+.|++....-.               ........   ...|.|.+++.+|+|
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence            445667788999999999998765556789987421100               01111111   136999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|...+.
T Consensus        85 ~YyCA~~~~   93 (108)
T d1jhll_          85 MYICQQHNE   93 (108)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEeeCCC
Confidence            999976654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=4.6e-07  Score=53.34  Aligned_cols=71  Identities=20%  Similarity=0.370  Sum_probs=48.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|++++|.|.........+.|++.  +..+             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            3456667888999999999886555557999974  2211             01122211   1246999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (106)
T d1i8ka_          85 DYYCLQSFN   93 (106)
T ss_dssp             EEEEEECSS
T ss_pred             EEeEecCcc
Confidence            999987543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=8.7e-07  Score=53.01  Aligned_cols=72  Identities=15%  Similarity=0.355  Sum_probs=49.9

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------C-------CCeeee-----cCCeEEEecCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------E-------DRMSVL-----PSRSLQLSDVRL  179 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------~-------~~~~~~-----~~~~l~i~~~~~  179 (216)
                      +...+....+.+|+.+.|.|.........+.|++..  ..+.       .       .+....     ....|.|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            445567788999999999999865555679999732  1110       0       011111     113599999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=9.2e-07  Score=52.89  Aligned_cols=71  Identities=20%  Similarity=0.335  Sum_probs=48.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccCC-------CC-------Ceee--e---cCCeEEEecCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAMP-------ED-------RMSV--L---PSRSLQLSDVRL  179 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~-------~~-------~~~~--~---~~~~l~i~~~~~  179 (216)
                      +...+....+.+|++++|.|.........+.|++.  +..+.       ..       ....  .   ....|.|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            34556677899999999999986555567889873  21110       00       0000  0   124699999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|+|.|.|.+..
T Consensus        83 ~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 SDSAVYFCAVSG   94 (115)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceecccccC
Confidence            999999998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.46  E-value=3.6e-07  Score=53.78  Aligned_cols=69  Identities=20%  Similarity=0.348  Sum_probs=48.4

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCeE
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~  184 (216)
                      ..|....+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            45677889999999999998665556689987431  11             01122211   12359999999999999


Q ss_pred             EEEEEEc
Q psy573          185 YVCEAEN  191 (216)
Q Consensus       185 y~C~~~n  191 (216)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=6.1e-07  Score=52.88  Aligned_cols=71  Identities=23%  Similarity=0.370  Sum_probs=48.8

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDG  182 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~  182 (216)
                      +...|....+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            3455667788999999999997655455699997421  11             01122221   224599999999999


Q ss_pred             eEEEEEEEc
Q psy573          183 GEYVCEAEN  191 (216)
Q Consensus       183 g~y~C~~~n  191 (216)
                      +.|.|.+..
T Consensus        84 A~YyCa~~~   92 (107)
T d1mexl1          84 AEYFCQQYN   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eeEEEeECC
Confidence            999998654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.45  E-value=4.5e-07  Score=54.00  Aligned_cols=74  Identities=16%  Similarity=0.319  Sum_probs=48.6

Q ss_pred             EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---ec----------cccCceEEEe----cCcEEEEcccC
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID----------FENSKRLRLV----DGTNLAIQDSR   88 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~~----------~~~~~~~~~~----~~~~l~i~~~~   88 (216)
                      ...|....+.+|+.++|.|.. .. ....+.||+..  +.   +.          ..........    ....|.|.+++
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~-~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQ-TM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEE-TT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             EECCCEEEECCCCCEEEEEEE-eC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            456777899999999999986 22 34578999831  11   10          0111111111    12369999999


Q ss_pred             CCCCceEEEEEEcCC
Q psy573           89 KTDDGRYQCVVKNVA  103 (216)
Q Consensus        89 ~~d~g~y~C~~~~~~  103 (216)
                      .+|+|.|.|.+....
T Consensus        80 ~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          80 PSHTSQYLCASSENI   94 (112)
T ss_dssp             TTTCSEEEEEEECSS
T ss_pred             ccccccEEEEEecCC
Confidence            999999999876543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.6e-07  Score=53.99  Aligned_cols=71  Identities=18%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             cceEEecCCcEEEEeeCCCC--CCCCeeEEeeC--CE----Eecc---------ccCceEEEecC-----cEEEEcccCC
Q psy573           32 KSQRVAAGDTALLECGPPRG--HPEPTLVWKKN--GH----PIDF---------ENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~--~~----~~~~---------~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      +...+.+|++++|.|.+ .+  .......|++.  ++    .+..         ...+++.+.++     ..|+|.+++.
T Consensus         3 ~~~~~~eG~svtl~C~y-s~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPF-NIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEEEECTTCCEEEEEEC-CHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCcCCCCCCEEEEEEE-CCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            45678999999999987 32  23446789983  22    1100         11234444332     2599999999


Q ss_pred             CCCceEEEEEEcCC
Q psy573           90 TDDGRYQCVVKNVA  103 (216)
Q Consensus        90 ~d~g~y~C~~~~~~  103 (216)
                      +|+|.|.|......
T Consensus        82 eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          82 TDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEeCCC
Confidence            99999999986544

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.44  E-value=7.6e-07  Score=52.83  Aligned_cols=70  Identities=23%  Similarity=0.404  Sum_probs=48.1

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------C------CCeeee-----cCCeEEEecCCCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------E------DRMSVL-----PSRSLQLSDVRLED  181 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------~------~~~~~~-----~~~~l~i~~~~~~d  181 (216)
                      ...|....+.+|+.++|.|.........+.|++..  ..+.       .      .+....     ....|.|.++..+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            44567778899999999999865555569999742  1110       0      011111     11359999999999


Q ss_pred             CeEEEEEEEc
Q psy573          182 GGEYVCEAEN  191 (216)
Q Consensus       182 ~g~y~C~~~n  191 (216)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (110)
T d1u3ha1          83 SATYFCAASA   92 (110)
T ss_dssp             CSEEEECCEE
T ss_pred             ceeEeeeecC
Confidence            9999998763

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.44  E-value=1.7e-06  Score=49.70  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=41.1

Q ss_pred             CCcEEEEeeCCCCCCCCeeEEeeCC--E---Eec------cccCceEEEe--c---CcEEEEcccCCCCCceEEEEEEcC
Q psy573           39 GDTALLECGPPRGHPEPTLVWKKNG--H---PID------FENSKRLRLV--D---GTNLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~~~~~W~~~~--~---~~~------~~~~~~~~~~--~---~~~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      |++++|.|.. .......+.||+..  .   .+.      .....++...  .   ..+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~-~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTY-SDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEE-ccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999986 44556689999831  1   110      0111122221  1   136999999999999999998653

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=3.9e-07  Score=53.76  Aligned_cols=70  Identities=21%  Similarity=0.357  Sum_probs=48.3

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC-------------CCCeee---ecCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP-------------EDRMSV---LPSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~-------------~~~~~~---~~~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|++++|.|.........+.|++...  .+.             ..+...   .....|.|.+++.+|+|
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence            445677788999999999998766666799997421  100             011111   12246999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|....
T Consensus        85 ~YyCa~~~   92 (107)
T d3cx5k1          85 TYFCQHHI   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEeeeCC
Confidence            99997643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=7.9e-07  Score=52.38  Aligned_cols=71  Identities=23%  Similarity=0.340  Sum_probs=48.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc--C-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--M-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~--~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|++++|.|.........+.|++....  +             ...+....   ....|.|.+++.+|+|
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            3446667888999999999986665666889874211  0             01122111   2246999999999999


Q ss_pred             EEEEEEEcC
Q psy573          184 EYVCEAENA  192 (216)
Q Consensus       184 ~y~C~~~n~  192 (216)
                      .|.|.....
T Consensus        85 ~YyCa~~~~   93 (107)
T d1d5il1          85 IYYCLQYDE   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeeccC
Confidence            999976543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-06  Score=51.92  Aligned_cols=78  Identities=19%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             eeEeCCCcEEEEEEeCCCC---CcE--EEEeeCCccC----------C---C----CCeee-ecCCeEEEecCCCCCCeE
Q psy573          128 TTVSAGSIIVFECSVGGDA---VLT--VHWKRLGSAM----------P---E----DRMSV-LPSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p---~~~--i~W~~~~~~~----------~---~----~~~~~-~~~~~l~i~~~~~~d~g~  184 (216)
                      ..+..|+++.|.|.....+   ...  +.|.++....          .   .    .+... ..+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            3567899999999874332   222  3444433211          0   0    01111 134579999999999999


Q ss_pred             EEEEEEcCC--cc---eEEEEEEEEE
Q psy573          185 YVCEAENAV--GK---ISASATLTVQ  205 (216)
Q Consensus       185 y~C~~~n~~--~~---~~~~~~l~v~  205 (216)
                      |.|.+....  +.   ....+.|.|.
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEEE
Confidence            999997443  32   2444555554

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.42  E-value=8.5e-07  Score=53.36  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=48.7

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeCC-----EEec-----------cccCceEEEec--C---cEE
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG-----HPID-----------FENSKRLRLVD--G---TNL   82 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~-----~~~~-----------~~~~~~~~~~~--~---~~l   82 (216)
                      ++...+..+...+|++++|.|.+ .+.  ....+.||+..     +.+.           .....++....  .   ..|
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~-~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L   81 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSIL   81 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEE-ecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccc
Confidence            34455567788899999999986 332  23468999831     1110           11223333322  1   259


Q ss_pred             EEcccCCCCCceEEEEEEc
Q psy573           83 AIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        83 ~i~~~~~~d~g~y~C~~~~  101 (216)
                      .|.+++.+|+|.|.|....
T Consensus        82 ~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          82 TIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EECSCCGGGCSEEEEEECC
T ss_pred             cccccccccceeEEEEEcC
Confidence            9999999999999998754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.8e-06  Score=49.56  Aligned_cols=67  Identities=13%  Similarity=0.281  Sum_probs=46.9

Q ss_pred             CCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCeeee---cCC------eEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          132 AGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVL---PSR------SLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       132 ~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~---~~~------~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      .++.+.|.|.+.| +|.+.+.|.+++..+........   .++      .|.+.   ..+...|+|.+.+........+.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~~~   91 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQTFN   91 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEEEE
Confidence            4677899999976 58889999999987754433222   122      34443   45678999999998877665544

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.3e-07  Score=49.08  Aligned_cols=64  Identities=20%  Similarity=0.451  Sum_probs=45.9

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCC-CCCceEEEEEEcC
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQCVVKNV  102 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~  102 (216)
                      -..|..|+|+|.-  . ....+.|.+++..+...............|.+.+.+. +++|.|.|.+...
T Consensus         7 sISGTtV~LTCP~--~-~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           7 SISGTTVILTCPQ--Y-PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EEETTEEEEECSS--C-TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             EEeCCEEEEECCC--C-CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCC
Confidence            3579999999963  2 3457999999988855433333334455788888766 7999999998543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.2e-06  Score=52.60  Aligned_cols=71  Identities=21%  Similarity=0.317  Sum_probs=44.7

Q ss_pred             ccceEEecCCcEEEEeeCCCCCCC--CeeEEeeC--CEEec-----cccCc----------eEEEec-CcEEEEcccCCC
Q psy573           31 PKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN--GHPID-----FENSK----------RLRLVD-GTNLAIQDSRKT   90 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~--~~~~~-----~~~~~----------~~~~~~-~~~l~i~~~~~~   90 (216)
                      |..+.+.+|+.++|.|....+...  ..+.||+.  ++...     .....          ...... ...|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            556778899999999986333222  24789983  22110     00000          111111 247999999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998763

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.38  E-value=1.2e-06  Score=50.78  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             EeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCee----eecCCeEE---EecCCCCCCeEEEEEEEcCCcceE
Q psy573          130 VSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMS----VLPSRSLQ---LSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~----~~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      +..|+..+|.|.+.++.  ...+.|.++|..+..+...    ...++++.   ...+..++.+.|+|.|.+......
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~~p   90 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGLEEP   90 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTSSSC
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCCCCc
Confidence            45678899999998873  4579999999877543111    11222211   123344567789999999765433

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.37  E-value=9.6e-07  Score=52.60  Aligned_cols=70  Identities=29%  Similarity=0.467  Sum_probs=47.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC--CCcEEEEeeCC--ccC----C-CCCeeee---c--CCeEEEecCCCCCCeEEEE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD--AVLTVHWKRLG--SAM----P-EDRMSVL---P--SRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~~~----~-~~~~~~~---~--~~~l~i~~~~~~d~g~y~C  187 (216)
                      ...|....+.+|+++.|.|...+.  ....+.|++..  ...    . ..+....   .  ...|.|.+++.+|+|.|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            445677788899999999988543  34568999732  211    1 1222221   1  1369999999999999999


Q ss_pred             EEEc
Q psy573          188 EAEN  191 (216)
Q Consensus       188 ~~~n  191 (216)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9854

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-06  Score=53.13  Aligned_cols=69  Identities=26%  Similarity=0.473  Sum_probs=45.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCC-------CCcEEEEeeCCccCC------------------CCCeeee-----cCCeEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGD-------AVLTVHWKRLGSAMP------------------EDRMSVL-----PSRSLQL  174 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~-------p~~~i~W~~~~~~~~------------------~~~~~~~-----~~~~l~i  174 (216)
                      +...++.+|+.+.|.|.....       ....+.|++......                  ..+....     .+.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456788899999999986311       123578987532110                  1122222     1246999


Q ss_pred             ecCCCCCCeEEEEEEEcCC
Q psy573          175 SDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n~~  193 (216)
                      .+++.+|+|.|.|.+....
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCChHHCEEEEEEEEeCC
Confidence            9999999999999997543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=1.6e-06  Score=51.75  Aligned_cols=74  Identities=14%  Similarity=0.327  Sum_probs=48.7

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCC--ccCC--------CC------Ceee--ec---CCeEEEecCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLG--SAMP--------ED------RMSV--LP---SRSLQLSDVR  178 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~--~~~~--------~~------~~~~--~~---~~~l~i~~~~  178 (216)
                      +...+....+.+|++++|.|.... .....+.|++..  ..+.        ..      +...  ..   ...|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            445667778999999999998643 334568898732  2110        00      1111  11   1359999999


Q ss_pred             CCCCeEEEEEEEcCCc
Q psy573          179 LEDGGEYVCEAENAVG  194 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~~  194 (216)
                      .+|+|.|.|.+....+
T Consensus        83 ~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGGCEEEEEEEECSBT
T ss_pred             cccCCCceEeCCCCCC
Confidence            9999999998765543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.1e-07  Score=53.53  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             eeEeCCCcEEEEEEeCCCC----CcEEEEeeCCccCC-------------CCCeeee--cCCeEEEecCCCCCCeEEEEE
Q psy573          128 TTVSAGSIIVFECSVGGDA----VLTVHWKRLGSAMP-------------EDRMSVL--PSRSLQLSDVRLEDGGEYVCE  188 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~-------------~~~~~~~--~~~~l~i~~~~~~d~g~y~C~  188 (216)
                      .+...|+.+.|.|......    ...+.|.+++..+.             ..+....  .+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            4677899999999864322    23578887664321             0122222  235799999999999999999


Q ss_pred             EEcCCc
Q psy573          189 AENAVG  194 (216)
Q Consensus       189 ~~n~~~  194 (216)
                      +.+..+
T Consensus        84 V~~~~~   89 (105)
T d1dr9a1          84 VLKYEK   89 (105)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            986543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=7.9e-07  Score=52.31  Aligned_cols=66  Identities=21%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ....+.+|++++|.|.........+.|++...  .+.             ..+....   ....|.|.+++.+|+|.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            45788899999999998765556799987421  110             1111111   12469999999999999999


Q ss_pred             EEEc
Q psy573          188 EAEN  191 (216)
Q Consensus       188 ~~~n  191 (216)
                      ....
T Consensus        88 a~~~   91 (106)
T d1lk3l1          88 QQSW   91 (106)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            7643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.36  E-value=2.4e-06  Score=51.21  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=49.5

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC------------------CCCCeeeec----CCeEEEecC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM------------------PEDRMSVLP----SRSLQLSDV  177 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~------------------~~~~~~~~~----~~~l~i~~~  177 (216)
                      ...|....+.+|+++.|.|...+.....+.|++..  ..+                  ...+.....    ...|.|.++
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   84 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA   84 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence            44456678889999999999866666679998842  110                  011222211    135999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy573          178 RLEDGGEYVCEAENAV  193 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~  193 (216)
                      ..+|+|.|.|.+....
T Consensus        85 ~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          85 HPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             ccccCceEEEEEecCC
Confidence            9999999999986543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.4e-06  Score=50.46  Aligned_cols=65  Identities=17%  Similarity=0.278  Sum_probs=42.6

Q ss_pred             eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCeee---ecCCe---EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSV---LPSRS---LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~---~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..|+.++|.|.+.++.  ...+.|.++|..+.......   ..+++   .....+..++.+.|+|.|.+....
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCC
Confidence            4577899999998863  34799999998776543221   12222   112233455677899999987654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.36  E-value=3.6e-06  Score=49.98  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=50.4

Q ss_pred             ceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec--------------cccCceEEE--ecCcEEEEccc
Q psy573           26 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID--------------FENSKRLRL--VDGTNLAIQDS   87 (216)
Q Consensus        26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~--------------~~~~~~~~~--~~~~~l~i~~~   87 (216)
                      .+...|....+.+|++++|.|.. .......+.||+.  |+.+.              .....++..  ..+..|.|...
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~   81 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA   81 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEE-SCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEE-ecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecC
Confidence            35567778889999999999986 3334457899984  22110              001122222  23457999999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      ..+|++.|.|....
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            99999999998653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.4e-06  Score=51.97  Aligned_cols=71  Identities=28%  Similarity=0.353  Sum_probs=48.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCc--cCC-------------------CCCeeee---cCCeEEEe
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGS--AMP-------------------EDRMSVL---PSRSLQLS  175 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~--~~~-------------------~~~~~~~---~~~~l~i~  175 (216)
                      +...|...++.+|++++|.|...... ...+.|++...  .+.                   ..+....   ....|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            34556778899999999999975443 34589988431  110                   0111111   11359999


Q ss_pred             cCCCCCCeEEEEEEEc
Q psy573          176 DVRLEDGGEYVCEAEN  191 (216)
Q Consensus       176 ~~~~~d~g~y~C~~~n  191 (216)
                      +++.+|+|.|.|.+..
T Consensus        83 ~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          83 DFRRENEGYYFCSALS   98 (114)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCCCCCCEEEeEeEcC
Confidence            9999999999999864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.2e-06  Score=50.87  Aligned_cols=66  Identities=17%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             EeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCC---eeeecCCeE---EEecCCCCCCeEEEEEEEcCCcc
Q psy573          130 VSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDR---MSVLPSRSL---QLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~---~~~~~~~~l---~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...|+.+.|.|.+.|+.  ...+.|.+||..+....   .....++++   ....+..++.+.|+|.|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   89 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS   89 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCS
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCCC
Confidence            35678899999998874  33689999998775421   112233332   22234456677999999997654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.2e-06  Score=50.01  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .|+.+.+.+|+.+.+.|.+  ..|..++..++ .+..+. .....+.......+.|.+.+..+.|.|.|.+....
T Consensus        11 ~p~~V~v~eg~~~vIPC~v--T~P~~~VtL~~~~~~~~~-p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          11 IPEIIHMTEGRELVIPCRV--TSPNITVTLKKFPLDTLI-PDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             SCEEEEECTTSCEEECCCB--SCTTSCCEEEETTTEEEC-CCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEEeCCCCEEEEccC--CCCCceeEEEeccCCccC-CCCCEEEECCCCCEEEeCCCcccCeEEEEEEEECC
Confidence            3455789999999999998  45777765544 555552 23344555666679999999999999999998653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.3e-06  Score=51.57  Aligned_cols=70  Identities=20%  Similarity=0.355  Sum_probs=48.1

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|++++|.|.........+.|++...  .+.             ..+....   ....|.|.+++.+|+|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            344667788899999999998655555699998421  110             0111111   1246999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998763

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.33  E-value=2.7e-06  Score=50.56  Aligned_cols=82  Identities=24%  Similarity=0.341  Sum_probs=51.9

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCC---------------CCCeeee---cCCeEEEecCCCCCCeEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMP---------------EDRMSVL---PSRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~---------------~~~~~~~---~~~~l~i~~~~~~d~g~y~  186 (216)
                      ...+.+|++++|.|...+..  ...+.|++....-.               ..+....   ....|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            56888999999999976543  45689997532110               1122221   1246999999999999999


Q ss_pred             EEEEcCCcce---EEEEEEEEEecc
Q psy573          187 CEAENAVGKI---SASATLTVQSKY  208 (216)
Q Consensus       187 C~~~n~~~~~---~~~~~l~v~~~p  208 (216)
                      |.........   ..-..|.|.+.|
T Consensus        89 CA~~~~~~~~~~FG~GT~LtVlg~p  113 (114)
T d2rhea_          89 CAAWNDSLDEPGFGGGTKLTVLGQP  113 (114)
T ss_dssp             EEEEETTTTEEEECCCEEEEECSCC
T ss_pred             EeecCCCCCCCEECCCeEEEECCCc
Confidence            9876432221   122456665544

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.32  E-value=2.9e-06  Score=50.28  Aligned_cols=71  Identities=18%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------------CCCeeee-----cCCeEEEecCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------------EDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------------~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      +...|....+.+|+.++|.|.........+.|++..  ..+.             ..+....     ....|.|.++..+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            345566778899999999998766555678898742  1110             0111111     1236999999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.32  E-value=2.1e-06  Score=50.74  Aligned_cols=70  Identities=20%  Similarity=0.388  Sum_probs=48.4

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|..+.+.+|+++.|.|...+.....+.|++...  .+             ...+....   ....|.|.+++.+|+|
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence            344666788999999999998766556788987421  11             01122111   1135999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.31  E-value=1.7e-06  Score=51.02  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=47.2

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCcc--C-------------CCCCeeee---cCCeEEEecCCCCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGSA--M-------------PEDRMSVL---PSRSLQLSDVRLEDG  182 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~--~-------------~~~~~~~~---~~~~l~i~~~~~~d~  182 (216)
                      ...|....+.+|+++.|.|..... ....+.|++....  +             ...+....   ....|.|.+++.+|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            345667788999999999997544 3446889874321  1             01111111   123599999999999


Q ss_pred             eEEEEEEEc
Q psy573          183 GEYVCEAEN  191 (216)
Q Consensus       183 g~y~C~~~n  191 (216)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (108)
T d2fx7l1          85 AVYYCQQYG   93 (108)
T ss_dssp             SEEEEEECS
T ss_pred             EEEeeecCC
Confidence            999998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.31  E-value=1.7e-06  Score=51.33  Aligned_cols=71  Identities=27%  Similarity=0.451  Sum_probs=47.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC--CCcEEEEeeCC--ccC----C-CCCeeee-----cCCeEEEecCCCCCCeEEEE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD--AVLTVHWKRLG--SAM----P-EDRMSVL-----PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~~~----~-~~~~~~~-----~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ...|....+..|+.++|.|...+.  ....+.|++..  ...    . ..+....     ....|.|.+++.+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            345566788899999999987543  34579999742  111    1 1122111     11369999999999999999


Q ss_pred             EEEcC
Q psy573          188 EAENA  192 (216)
Q Consensus       188 ~~~n~  192 (216)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            87644

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.30  E-value=1.6e-06  Score=51.37  Aligned_cols=71  Identities=20%  Similarity=0.333  Sum_probs=46.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC----CCcEEEEeeCC--ccCC-------------CCCeeee---cCCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD----AVLTVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~--~~~~-------------~~~~~~~---~~~~l~i~~~~~  179 (216)
                      ...|....+.+|++++|.|.....    ....+.|++..  ..+.             ..+....   ....|.|.+++.
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            345667788999999999987532    12248998742  1110             1122221   124699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|++.|.|.+...
T Consensus        85 ~DsA~YyCa~~~~   97 (111)
T d2gsia1          85 EDAATYYCSHIRE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             cCCceEEEEECCC
Confidence            9999999987544

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.28  E-value=6.9e-08  Score=55.88  Aligned_cols=70  Identities=26%  Similarity=0.504  Sum_probs=45.2

Q ss_pred             ceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEec----------cccCceEEEec-----CcEEEEcccCCCCCceE
Q psy573           33 SQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVD-----GTNLAIQDSRKTDDGRY   95 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~----------~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y   95 (216)
                      +..|.+|++++|.|.. .. ....+.||+.  ++...          ....+++....     ...|.|.+++.+|+|.|
T Consensus         2 slsV~eG~~vtL~C~~-~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSY-KT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBC-SS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             CceECCCCCEEEEEEE-eC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            3467899999999987 33 3457999983  22110          11122222211     13699999999999999


Q ss_pred             EEEEEcCCC
Q psy573           96 QCVVKNVAG  104 (216)
Q Consensus        96 ~C~~~~~~~  104 (216)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998765433

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=3.8e-06  Score=49.64  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------------CCCeeee-----cCCeEEEecCCCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------------EDRMSVL-----PSRSLQLSDVRLE  180 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------------~~~~~~~-----~~~~l~i~~~~~~  180 (216)
                      +...+....+.+|+.+.|.|.........+.|++..  ..+.             ..+....     ....|.|.++..+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            345667778999999999998755444569999843  1110             0111111     1245999999999


Q ss_pred             CCeEEEEEEEcC
Q psy573          181 DGGEYVCEAENA  192 (216)
Q Consensus       181 d~g~y~C~~~n~  192 (216)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.27  E-value=3.6e-06  Score=50.02  Aligned_cols=72  Identities=26%  Similarity=0.527  Sum_probs=47.9

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC------C-----CCeee--e----cCCeEEEecCCCCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP------E-----DRMSV--L----PSRSLQLSDVRLEDG  182 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~------~-----~~~~~--~----~~~~l~i~~~~~~d~  182 (216)
                      ...|....+.+|+.+.|.|..... ...+.|++...  .+.      .     .....  .    ....|.|.+++.+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            345667788999999999997643 34689988421  110      0     00000  0    113599999999999


Q ss_pred             eEEEEEEEcCCc
Q psy573          183 GEYVCEAENAVG  194 (216)
Q Consensus       183 g~y~C~~~n~~~  194 (216)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999999875443

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=3.9e-06  Score=49.61  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=45.2

Q ss_pred             CCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCC--ccCC-----------CCC--eeee---cCCeEEEecCCCCCCeEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLG--SAMP-----------EDR--MSVL---PSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~--~~~~-----------~~~--~~~~---~~~~l~i~~~~~~d~g~y  185 (216)
                      |..+.+.+|++++|.|..... ....+.|++..  ..+.           ..+  ....   ....|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345788899999999997543 34568999842  2110           000  1111   113599999999999999


Q ss_pred             EEEEEcC
Q psy573          186 VCEAENA  192 (216)
Q Consensus       186 ~C~~~n~  192 (216)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.7e-06  Score=48.94  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCC---CCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      +|.+...|. ..+..|++++|.|... .+...+.++|++.....   ..........+.|.++...|+|.|.|....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            455555544 4678999999999964 34557888898753211   111112346799999999999999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.26  E-value=2.7e-06  Score=49.81  Aligned_cols=69  Identities=26%  Similarity=0.395  Sum_probs=45.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC---------------CCCeeee---cCCeEEEecCCCCCCe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---------------~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      ...|....+.+|++++|.|..... ...+.|++....-.               ..+....   ....|.|.+++.+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            345667788999999999987433 33578987432100               0111111   1246999999999999


Q ss_pred             EEEEEEEc
Q psy573          184 EYVCEAEN  191 (216)
Q Consensus       184 ~y~C~~~n  191 (216)
                      .|.|....
T Consensus        83 ~YyCa~~~   90 (104)
T d1yqvl1          83 TYYCQQWG   90 (104)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99997643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.26  E-value=1.7e-06  Score=50.56  Aligned_cols=67  Identities=25%  Similarity=0.372  Sum_probs=45.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ..+.+.+|++++|.|.........+.|++...  .+.             ..+....   ....|.|.+++.+|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            36778899999999998655555689997422  110             0111111   12469999999999999999


Q ss_pred             EEEcC
Q psy573          188 EAENA  192 (216)
Q Consensus       188 ~~~n~  192 (216)
                      .+...
T Consensus        86 A~~~~   90 (103)
T d8faba1          86 QAWDN   90 (103)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            87543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=2.8e-06  Score=50.75  Aligned_cols=72  Identities=15%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCc--cCC--------------CCCeeee-----cCCeEEEecCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGS--AMP--------------EDRMSVL-----PSRSLQLSDVR  178 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~--~~~--------------~~~~~~~-----~~~~l~i~~~~  178 (216)
                      +...+....+.+|++++|.|.... .....+.|++...  .+.              ..+....     ....|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            345667788999999999998743 3445688997421  110              0111111     11359999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy573          179 LEDGGEYVCEAENA  192 (216)
Q Consensus       179 ~~d~g~y~C~~~n~  192 (216)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          82 IEDSAVYFCAMRGD   95 (115)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccccccccceeecC
Confidence            99999999998744

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.23  E-value=3.7e-06  Score=48.61  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             ecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee--ee-cCCeEEEecCCCCCCeEEEEEEEc
Q psy573          117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL-PSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       117 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~-~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .+|.+...|. ..+..|++|+|.|... .+...+.|+|++.........  .. ....+.|..+...|+|.|+|....
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            4566665554 4788999999999875 345679999998654322111  11 123467788888899999997653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.3e-06  Score=52.04  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             eeEeCCCcEEEEEEeCCC--CCcEEEEeeCCcc--C-----------C-----CCCeeee---cC--CeEEEecCCCCCC
Q psy573          128 TTVSAGSIIVFECSVGGD--AVLTVHWKRLGSA--M-----------P-----EDRMSVL---PS--RSLQLSDVRLEDG  182 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~~--~-----------~-----~~~~~~~---~~--~~l~i~~~~~~d~  182 (216)
                      ..+.+|+++.|.|...+.  ....+.|++....  .           .     ..+....   ..  .+|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            467789999999987532  3446889874221  0           0     0122221   11  3589999999999


Q ss_pred             eEEEEEEEcCC
Q psy573          183 GEYVCEAENAV  193 (216)
Q Consensus       183 g~y~C~~~n~~  193 (216)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999986543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=4.4e-06  Score=47.86  Aligned_cols=60  Identities=22%  Similarity=0.417  Sum_probs=41.2

Q ss_pred             CCcEEEEEEeCCCCCcEEEEeeCCcc--C------C------CCCeeee-----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          133 GSIIVFECSVGGDAVLTVHWKRLGSA--M------P------EDRMSVL-----PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       133 g~~~~l~C~~~~~p~~~i~W~~~~~~--~------~------~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      |++++|.|.........+.|++....  +      .      ..+....     ....|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78899999987666678999973321  1      0      0111111     1136999999999999999988754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=5.6e-06  Score=49.29  Aligned_cols=82  Identities=18%  Similarity=0.419  Sum_probs=51.6

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC-------C------CCeeee-----cCCeEEEecCCCCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP-------E------DRMSVL-----PSRSLQLSDVRLEDG  182 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~-------~------~~~~~~-----~~~~l~i~~~~~~d~  182 (216)
                      ..|....+.+|+++.|.|...+. ...+.|++...  .+.       .      .+....     ....|.|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            44566789999999999997643 34689987421  110       0      111111     123699999999999


Q ss_pred             eEEEEEEEcCCcc--eEEEEEEEEE
Q psy573          183 GEYVCEAENAVGK--ISASATLTVQ  205 (216)
Q Consensus       183 g~y~C~~~n~~~~--~~~~~~l~v~  205 (216)
                      |.|.|.+....+.  -..-..|+|+
T Consensus        84 a~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          84 GLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             eeEcccccCCCCCcEECCCEEEEEe
Confidence            9999988754432  1222445555

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.23  E-value=3.1e-06  Score=51.05  Aligned_cols=73  Identities=22%  Similarity=0.343  Sum_probs=47.5

Q ss_pred             EecccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CE---Ee-----------c-cccCceEEEec---C--cEEE
Q psy573           28 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GH---PI-----------D-FENSKRLRLVD---G--TNLA   83 (216)
Q Consensus        28 ~~~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~---~~-----------~-~~~~~~~~~~~---~--~~l~   83 (216)
                      ...+.++...+|++++|.|.+ .+.  ....+.||+.  ++   .+           . ....+++....   .  ..|.
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~-sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEE-cCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            334456788899999999987 332  2346889983  11   11           0 01123444431   1  2599


Q ss_pred             EcccCCCCCceEEEEEEc
Q psy573           84 IQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+++.+|+|.|+|....
T Consensus        84 i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccccccCcEEEEeeeC
Confidence            999999999999998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.22  E-value=2.6e-06  Score=50.47  Aligned_cols=70  Identities=26%  Similarity=0.440  Sum_probs=45.9

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCC----CCcEEEEeeC--CccCC-------------CCCeeee---cCCeEEEecCCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGD----AVLTVHWKRL--GSAMP-------------EDRMSVL---PSRSLQLSDVRLE  180 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~--~~~~~-------------~~~~~~~---~~~~l~i~~~~~~  180 (216)
                      ..|..+.+.+|+.++|.|.....    ....+.|++.  +..+.             ..+....   ....|.|.+++.+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            44566778899999999987432    2234899874  22110             0111111   1246999999999


Q ss_pred             CCeEEEEEEEcC
Q psy573          181 DGGEYVCEAENA  192 (216)
Q Consensus       181 d~g~y~C~~~n~  192 (216)
                      |+|.|.|.+.+.
T Consensus        86 Dsa~YyCa~~~~   97 (111)
T d1j05a_          86 DVATYYCQQTNE   97 (111)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCccEEEeecCC
Confidence            999999987643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=6.7e-06  Score=44.66  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=51.4

Q ss_pred             ceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCcc----CCCCCe-e-ee-cC-----CeEEEecCCCCCCeEEEEEEEcCC
Q psy573          127 DTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSA----MPEDRM-S-VL-PS-----RSLQLSDVRLEDGGEYVCEAENAV  193 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~----~~~~~~-~-~~-~~-----~~l~i~~~~~~d~g~y~C~~~n~~  193 (216)
                      ...+..|+.+.|.|.+.- ...|.++|-|-++.    +..... . .. ..     ..|.+.++..+|.|.|+|.+.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            347788999999999954 46889999874432    221111 1 11 11     247788999999999999997655


Q ss_pred             cc-eEEEEEEEE
Q psy573          194 GK-ISASATLTV  204 (216)
Q Consensus       194 ~~-~~~~~~l~v  204 (216)
                      +- .+.++++.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            43 444455443

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=5e-06  Score=49.63  Aligned_cols=70  Identities=24%  Similarity=0.297  Sum_probs=45.5

Q ss_pred             CCceeEeCCCcEEEEEEeCC---CC---CcEEEEeeCCccC----------------CCCCeeee-----cCCeEEEecC
Q psy573          125 PKDTTVSAGSIIVFECSVGG---DA---VLTVHWKRLGSAM----------------PEDRMSVL-----PSRSLQLSDV  177 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~---~p---~~~i~W~~~~~~~----------------~~~~~~~~-----~~~~l~i~~~  177 (216)
                      |....+.+|+.+.|.|....   .+   ...+.|++.....                ...+....     ...+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            46678899999999998631   11   2246677643211                01122222     2346999999


Q ss_pred             CCCCCeEEEEEEEcCCc
Q psy573          178 RLEDGGEYVCEAENAVG  194 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~~~  194 (216)
                      +.+|+|.|.|.+....+
T Consensus        87 ~~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISDS  103 (118)
T ss_dssp             CGGGCEEEEEEEECC-C
T ss_pred             ChhHCEEEEEEEEeCCC
Confidence            99999999999976543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.20  E-value=8.5e-06  Score=47.89  Aligned_cols=67  Identities=16%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEec---C--cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVD---G--TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~---~--~~l~i~~~~   88 (216)
                      ...+.+|+.++|.|.+ .+.  ....+.||+.  |+.+               .....+|+.+..   .  ..|+|.+++
T Consensus         9 ~~~~kPG~sl~LsC~~-SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~   87 (115)
T d1f3dh1           9 PELVKPGASVKVSCKA-SGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT   87 (115)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-ccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence            4568899999999987 332  2346889873  2211               111233554432   1  249999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|...
T Consensus        88 ~eDtAvYYCAr~   99 (115)
T d1f3dh1          88 FEDSAVYYCAND   99 (115)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCcEEEEEecc
Confidence            999999999753

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.9e-06  Score=51.69  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=44.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCC--EE---e--ccccCc------eE----EE-ecCcEEEEcccCC
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNG--HP---I--DFENSK------RL----RL-VDGTNLAIQDSRK   89 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~--~~---~--~~~~~~------~~----~~-~~~~~l~i~~~~~   89 (216)
                      +|..+.+.+|+.++|.|....+...  ..+.||+..  +.   +  ......      +.    .. .....|+|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3566778899999999987333222  258899842  11   1  000000      00    00 0123699999999


Q ss_pred             CCCceEEEEEEc
Q psy573           90 TDDGRYQCVVKN  101 (216)
Q Consensus        90 ~d~g~y~C~~~~  101 (216)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.19  E-value=5.1e-06  Score=49.31  Aligned_cols=71  Identities=21%  Similarity=0.363  Sum_probs=46.5

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC------CCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD------AVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDV  177 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~------p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~  177 (216)
                      ...|....+.+|+++.|.|...+.      ....+.|++...  .+.             ..+....   ....|.|.++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            345667788999999999987542      123489998421  110             0111111   1236999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy573          178 RLEDGGEYVCEAENA  192 (216)
Q Consensus       178 ~~~d~g~y~C~~~n~  192 (216)
                      +.+|+|.|.|.....
T Consensus        85 ~~~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          85 QAEDLAVYYCKQSYN   99 (113)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccCCCeEEEecccCC
Confidence            999999999987543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-06  Score=50.62  Aligned_cols=67  Identities=18%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             CCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCee----eecC------CeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          132 AGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .++.+.|.|.+.++.  ...|.|.++|..+......    ...+      +.|.|..-.......|+|.|.+......+
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK   97 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence            456789999997763  3479999998765432111    1112      34666555555677999999987654433

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.19  E-value=6.3e-06  Score=48.67  Aligned_cols=70  Identities=16%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------C---------CCCeee----ecCCeEEEecCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------P---------EDRMSV----LPSRSLQLSDVR  178 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------~---------~~~~~~----~~~~~l~i~~~~  178 (216)
                      +...|....+.+|++++|.|..... ...+.|++...  .+       .         ..+...    .....|.|.+++
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            3455677788999999999987543 45799998421  10       0         001111    012458899999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=1.5e-05  Score=47.13  Aligned_cols=68  Identities=21%  Similarity=0.450  Sum_probs=45.6

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC-----------------CCCCeeeec----CCeEEEecCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM-----------------PEDRMSVLP----SRSLQLSDVRL  179 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~-----------------~~~~~~~~~----~~~l~i~~~~~  179 (216)
                      ..|....+.+|++++|.|..... ...+.|++..  ..+                 ...+.....    ...|.|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            34566788899999999985433 3478998742  110                 111222211    13699999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.17  E-value=5.4e-06  Score=49.08  Aligned_cols=70  Identities=23%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC-----CcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA-----VLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVR  178 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~  178 (216)
                      ...|..+.+.+|+.++|.|......     ..-+.|++...  .+             ...+....   ....|.|.+++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            3446677899999999999865432     23488987421  10             01122111   12359999999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|+|.|.|...+
T Consensus        85 ~eDsAvYYC~~~~   97 (112)
T d1ncwl1          85 AEDLGVYYCWQGT   97 (112)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCcCEeEEEEcCC
Confidence            9999999996543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=9.1e-06  Score=48.30  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc--C-------C---------CCCeeee----cCCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--M-------P---------EDRMSVL----PSRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~--~-------~---------~~~~~~~----~~~~l~i~~~~~  179 (216)
                      ...|....+.+|++++|.|... .....+.|++....  +       .         ..+....    ....|.|.++..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            3456677899999999999975 33457899874321  0       0         0011111    124699999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy573          180 EDGGEYVCEAENAV  193 (216)
Q Consensus       180 ~d~g~y~C~~~n~~  193 (216)
                      +|+|.|.|.+....
T Consensus        82 ~DSa~YyCa~~~~~   95 (114)
T d1ogae1          82 NPTAFYLCASSSRS   95 (114)
T ss_dssp             CCCEEEEEEEESST
T ss_pred             CCceeEEEeeccCC
Confidence            99999999876543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.2e-06  Score=49.70  Aligned_cols=79  Identities=22%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcE---EEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+.+.+.. .+..|+.++|.|.+....| ...+.|.++|..+............+++   .....+..++.+.|+|.+
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V   83 (100)
T d1k5nb_           5 TPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV   83 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEE
T ss_pred             CCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEE
Confidence            3454443222 2457899999999843344 4589999999987432222223333433   222334456677899999


Q ss_pred             EcCC
Q psy573          100 KNVA  103 (216)
Q Consensus       100 ~~~~  103 (216)
                      ....
T Consensus        84 ~H~s   87 (100)
T d1k5nb_          84 NHVT   87 (100)
T ss_dssp             ECTT
T ss_pred             EeCC
Confidence            8753

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=9.3e-07  Score=53.05  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCeEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~y  185 (216)
                      .|....+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|.|
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY   86 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence            3456678899999999997655455689997422  11             01111111   123699999999999999


Q ss_pred             EEEEEc
Q psy573          186 VCEAEN  191 (216)
Q Consensus       186 ~C~~~n  191 (216)
                      .|....
T Consensus        87 yCa~~~   92 (119)
T d1f3rb2          87 FCYQYN   92 (119)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            998764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.15  E-value=9.6e-06  Score=47.99  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCC-----CCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGD-----AVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVR  178 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~  178 (216)
                      ...|..+.+.+|++++|.|...+.     ....+.|++...  .+.             ..+....   ....|.|.+++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~   84 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE   84 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence            345667788899999999987553     234589987431  110             0111111   11359999999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|++.|.|...
T Consensus        85 ~~DsAvYyCa~~   96 (112)
T d1mjul1          85 AEDVGVYYCLQH   96 (112)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccCCceEEEEeC
Confidence            999999999654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-05  Score=45.49  Aligned_cols=73  Identities=16%  Similarity=0.203  Sum_probs=47.2

Q ss_pred             cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeee------ecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .|.+...+. ..+..|++++|.|... .....+.++|++..........      .....+.|.++...|+|.|+|....
T Consensus         4 kPsLsa~P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPS-PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCC-CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            455555554 3688999999999964 3445788888876543221111      1124699999999999999998754


Q ss_pred             C
Q psy573          192 A  192 (216)
Q Consensus       192 ~  192 (216)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.6e-07  Score=52.53  Aligned_cols=66  Identities=17%  Similarity=0.360  Sum_probs=43.1

Q ss_pred             EeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee-----eecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          130 VSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS-----VLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~-----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...++.++|.|.+.+. | ...|.|.++|..+......     ...+      +.|.|..-....+..|+|.|.+....
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            3346689999999775 3 3579999999876543211     1122      34555554445566899999987654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.14  E-value=7.1e-06  Score=48.61  Aligned_cols=70  Identities=27%  Similarity=0.396  Sum_probs=46.9

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCe
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGG  183 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g  183 (216)
                      |....+.+|++++|.|...+..   ...+.|++...  .+             ...+....   ....|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4567888999999999976542   23589997421  11             01111111   2246999999999999


Q ss_pred             EEEEEEEcCCc
Q psy573          184 EYVCEAENAVG  194 (216)
Q Consensus       184 ~y~C~~~n~~~  194 (216)
                      .|.|...+..+
T Consensus        87 ~YyCa~~~~~~   97 (112)
T d1lgva1          87 DYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEeeecCCC
Confidence            99998865443

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=4.3e-06  Score=48.37  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcE---EEEcccCCCCCceEEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~   99 (216)
                      +|.+.+.+.. ....|+.++|.|.+....| ...+.|+++|..+............+++   .....+..++.+.|+|.+
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V   82 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRV   82 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEE
Confidence            3444443322 2346888999999844344 3589999999987433222222233332   222233455667899999


Q ss_pred             EcCC
Q psy573          100 KNVA  103 (216)
Q Consensus       100 ~~~~  103 (216)
                      ....
T Consensus        83 ~H~s   86 (99)
T d1lk2b_          83 KHDS   86 (99)
T ss_dssp             ECTT
T ss_pred             EeCC
Confidence            8643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.12  E-value=7.2e-06  Score=47.25  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----eeecCCe---EEEecCCCCCCeEEEEEEEcCCcce
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----SVLPSRS---LQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~~~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      .++...|.|.+.++.+  ..+.|.++|..+..+..    ....+++   +....+...+...|+|.|.+.....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            3556689999988643  47999999887654311    1112222   2223456777889999999976543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=46.43  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=42.8

Q ss_pred             EeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCC----eeeecCCeEEE---ecCCCCCCeEEEEEEEcCCcce
Q psy573          130 VSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDR----MSVLPSRSLQL---SDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~----~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ...++.+.|.|.+.++.  ...+.|.+||..+..+.    .....++++.+   -.+..++...|+|.|.+.....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~~   89 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPE   89 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCCC
Confidence            34567899999998873  45799999998764321    11112222211   2344556668999999976553

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.11  E-value=4.7e-06  Score=49.04  Aligned_cols=67  Identities=22%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCeEEEE
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGGEYVC  187 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~y~C  187 (216)
                      ....+.+|++++|.|.........+.|++...  .+             ...+....   ....|.|.+++.+|+|.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            35678899999999997654445689987421  11             01111111   12368999999999999999


Q ss_pred             EEEcC
Q psy573          188 EAENA  192 (216)
Q Consensus       188 ~~~n~  192 (216)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            88654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.10  E-value=8.9e-06  Score=46.61  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=49.0

Q ss_pred             ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee--ee---cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573          119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL---PSRSLQLSDVRLEDGGEYVCEAENA  192 (216)
Q Consensus       119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~---~~~~l~i~~~~~~d~g~y~C~~~n~  192 (216)
                      |.+...+ ...+..|++++|.|... .....+.++|++.........  ..   ....+.|.++...|+|.|.|.....
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4454444 35788999999999975 334578899987643211111  11   1245999999999999999987543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=1.8e-05  Score=46.81  Aligned_cols=68  Identities=18%  Similarity=0.416  Sum_probs=45.7

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-----------------CCCCeeee----cCCeEEEecCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-----------------PEDRMSVL----PSRSLQLSDVRL  179 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-----------------~~~~~~~~----~~~~l~i~~~~~  179 (216)
                      ..|....+.+|++++|.|.... ....+.|++...  .+                 ...+....    ....|.|.++++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            3456677889999999998643 335689987421  10                 11122111    124699999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.09  E-value=2.2e-05  Score=46.58  Aligned_cols=67  Identities=18%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             eEEecCCcEEEEeeCC---CCCCCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccCC
Q psy573           34 QRVAAGDTALLECGPP---RGHPEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~---~~~~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ..+.+|+.++|.|.+.   .......+.||+.  ++.+              .....+++....+     ..|+|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4567899999999852   1223346789973  2211              0112345555432     2599999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.08  E-value=2e-06  Score=49.76  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=46.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCcE---EEEcccCCCCCceEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGTN---LAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---l~i~~~~~~d~g~y~C~   98 (216)
                      +|.+.+.+.. .+..|+.++|.|.+....| ...+.|+++|..+.... ........+++   .....+..++.+.|+|.
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK   81 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEE
Confidence            4555555433 3457899999999844444 56999999998773211 11111122222   22223344566789999


Q ss_pred             EEcCC
Q psy573           99 VKNVA  103 (216)
Q Consensus        99 ~~~~~  103 (216)
                      +....
T Consensus        82 V~H~s   86 (100)
T d1muja1          82 VEHWG   86 (100)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            98753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.2e-07  Score=52.11  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             CCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          132 AGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      .++.+.|.|.+.++.  ...+.|.++|..+.....    ....++      .|.+..-.......|+|.|.+......
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   96 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE   96 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccEE
Confidence            456789999998753  347999999987654321    111222      344443333345579999999754433

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.08  E-value=1.8e-05  Score=45.90  Aligned_cols=72  Identities=18%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCee---eecCCeEEEe---cCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573          131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMS---VLPSRSLQLS---DVRLEDGGEYVCEAENAVGKISASATL  202 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~---~~~~~~l~i~---~~~~~d~g~y~C~~~n~~~~~~~~~~l  202 (216)
                      ..|+..+|.|.+.++.  ...+.|.+++..+......   ...++++.+.   .+..++...|+|.|.+..........+
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l~~p~~~~w   95 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYTAIAYW   95 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCCCCCEEEEe
Confidence            4577889999998864  3469999999876533221   1233332221   234455667999999986655544443

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=1.4e-05  Score=47.09  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=44.0

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC---cEEEEeeCC--ccC-------------CCCCeeee---cCCeEEEecCCCCCCeEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAV---LTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~--~~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~y  185 (216)
                      ...+.+|++++|.|.......   .-+.|++..  ..+             ...++...   ....|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            567889999999999864332   238898732  111             01122211   224699999999999999


Q ss_pred             EEEEEcC
Q psy573          186 VCEAENA  192 (216)
Q Consensus       186 ~C~~~n~  192 (216)
                      .|.....
T Consensus        89 yCa~~~~   95 (110)
T d1oaql_          89 FCALWYS   95 (110)
T ss_dssp             EEEEEET
T ss_pred             EEEcccC
Confidence            9987643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=47.23  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCC--ccCC-----------CC--Ceeeec---CCeEEEecCCCCCCeEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLG--SAMP-----------ED--RMSVLP---SRSLQLSDVRLEDGGEY  185 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~--~~~~-----------~~--~~~~~~---~~~l~i~~~~~~d~g~y  185 (216)
                      |....+.+|++++|.|...+.. ...+.|++..  ..+.           ..  +.....   ...|.|.++..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            4567888999999999976543 3458999842  1111           00  111111   13599999999999999


Q ss_pred             EEEEEc
Q psy573          186 VCEAEN  191 (216)
Q Consensus       186 ~C~~~n  191 (216)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.05  E-value=2.4e-05  Score=47.01  Aligned_cols=70  Identities=21%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--cc------------------CCCCCeeeec---C--CeEEE
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SA------------------MPEDRMSVLP---S--RSLQL  174 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~------------------~~~~~~~~~~---~--~~l~i  174 (216)
                      ..++......+|+++.|.|.+.+..  ...+.|++..  +.                  ....+.....   .  ..|.|
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i   84 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecc
Confidence            3444556778899999999987653  3458898732  11                  1112333321   1  35999


Q ss_pred             ecCCCCCCeEEEEEEEc
Q psy573          175 SDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n  191 (216)
                      .+++.+|+|.|.|....
T Consensus        85 ~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          85 HNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccccccCcEEEEeeeC
Confidence            99999999999998753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.04  E-value=1.5e-05  Score=46.85  Aligned_cols=70  Identities=17%  Similarity=0.365  Sum_probs=46.4

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC---c--EEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG---T--NLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~---~--~l~i~~~   87 (216)
                      ....+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+   .  .|+|.++
T Consensus         8 g~~~~kPg~sv~LsC~~-SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L   86 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKV-SGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEE-cCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc
Confidence            34568899999999987 432  2346788873  2211               1223445554422   1  4999999


Q ss_pred             CCCCCceEEEEEEcC
Q psy573           88 RKTDDGRYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g~y~C~~~~~  102 (216)
                      +.+|++.|+|.....
T Consensus        87 ~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          87 RSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcCcceEEEEeEcCC
Confidence            999999999986543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=1.1e-05  Score=47.85  Aligned_cols=68  Identities=19%  Similarity=0.384  Sum_probs=44.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE---e---c---------cccCceEEEec---C--cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I---D---------FENSKRLRLVD---G--TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~---~---~---------~~~~~~~~~~~---~--~~l~i~~~~   88 (216)
                      ...+.+|+.++|.|.+ .+.  ....+.||+.  |+.   +   .         ....+|+.+..   .  ..|+|.+++
T Consensus         9 ~~~~kpG~Sv~LsC~~-SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           9 AELVKPGASVKMSCKA-SGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCEECTTEEEEEEEEE-ETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-eccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            3467899999999986 332  2346889983  221   1   0         11233444432   1  249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDsAvYYCA~~~  100 (119)
T d1qnzh_          88 SDDSAVYYCAIHY  100 (119)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccceeEEEEEEec
Confidence            9999999997543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.02  E-value=1.3e-05  Score=47.51  Aligned_cols=70  Identities=24%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC-----CcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA-----VLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVR  178 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~  178 (216)
                      ...|....+.+|++++|.|...+..     ...+.|++...  .+.             ..+....   ....|.|.+++
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            4456677889999999999975432     24589987421  110             1122111   12469999999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|+|.|.|...+
T Consensus        86 ~~DsavYyCa~~~   98 (113)
T d1n4xl_          86 AEDLGIYYCFQGS   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEEEEECC
Confidence            9999999997554

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=3.1e-06  Score=49.80  Aligned_cols=64  Identities=20%  Similarity=0.314  Sum_probs=41.7

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCeee-----ecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMSV-----LPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~-----~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++.+.|.|.+.+. | ...|.|.++|..+.......     ..+      +.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            46678999999776 3 34799999987665432111     112      24555544444567899999987654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.02  E-value=1.3e-05  Score=47.41  Aligned_cols=70  Identities=20%  Similarity=0.386  Sum_probs=46.6

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCC------------------CCCeeee----cCCeEEEecCCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP------------------EDRMSVL----PSRSLQLSDVRLE  180 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~------------------~~~~~~~----~~~~l~i~~~~~~  180 (216)
                      ..|....+.+|+.++|.|..... ...+.|++....-.                  .......    ....|.|.+++.+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            34566788899999999997533 35689998432100                  0011111    1245999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy573          181 DGGEYVCEAENAV  193 (216)
Q Consensus       181 d~g~y~C~~~n~~  193 (216)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          82 HTSQYLCASSENI   94 (112)
T ss_dssp             TCSEEEEEEECSS
T ss_pred             ccccEEEEEecCC
Confidence            9999999887543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.01  E-value=1.1e-05  Score=47.67  Aligned_cols=68  Identities=21%  Similarity=0.366  Sum_probs=45.5

Q ss_pred             CCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCc--cC-------------CCCCeeee---cCCeEEEecCCCCCCeE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDGGE  184 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~  184 (216)
                      |....+.+|+++.|.|...+..  ...+.|++...  .+             ...+....   ....|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            3457888999999999875432  34599987421  10             01111111   12469999999999999


Q ss_pred             EEEEEEcC
Q psy573          185 YVCEAENA  192 (216)
Q Consensus       185 y~C~~~n~  192 (216)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.8e-05  Score=45.11  Aligned_cols=66  Identities=20%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc--CceEEEecCcE---EEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN--SKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .++.++|.|.+....| ...+.|.++|+.+....  ........+++   .....+...+...|+|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            5678999999844345 45999999999875322  22222233322   2333445566677999998753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.01  E-value=1.4e-05  Score=46.94  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=45.8

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC-------------CCCCeeee---cCCeEEEecCCCCCCeEEE
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~-------------~~~~~~~~---~~~~l~i~~~~~~d~g~y~  186 (216)
                      |....+.+|++++|.|.........+.|++..  ..+             -.++....   ....|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            45678889999999998754444468898732  111             01122221   1246999999999999999


Q ss_pred             EEEEcC
Q psy573          187 CEAENA  192 (216)
Q Consensus       187 C~~~n~  192 (216)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.01  E-value=1.2e-05  Score=47.18  Aligned_cols=69  Identities=19%  Similarity=0.317  Sum_probs=45.8

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccC
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ....+.+|+.++|.|.+ .+.  ....+.|++.  |+.+              .....+|+.+..+     ..|+|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTV-SGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVT   86 (116)
T ss_dssp             CCSEECTTSCEEEEEEE-ESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEE-eeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccc
Confidence            34568899999999987 432  3347889873  2111              1222345544421     259999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        87 ~eDtAvYyCAr~~   99 (116)
T d7fabh1          87 AADTAVYYCARNL   99 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEeeeec
Confidence            9999999998643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.2e-05  Score=44.84  Aligned_cols=65  Identities=17%  Similarity=0.250  Sum_probs=41.8

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCeee---ecCCe---EEEecCCCCCCeEEEEEEEcCCcce
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMSV---LPSRS---LQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~---~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      .|+.+.|.|.+.++.+  ..+.|.+++..+.......   ..+++   .....+...+...|+|.|.+.....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~~   86 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQ   86 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCCC
Confidence            4778999999988643  4699999998765432211   11222   2222344556668999999876543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=1.6e-05  Score=46.55  Aligned_cols=67  Identities=21%  Similarity=0.374  Sum_probs=45.2

Q ss_pred             ceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEE--------------eccccCceEEEecC-----cEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP--------------IDFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~--------------~~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ...+.+|+.++|.|.+ .+..  ...+.|++.  |+.              ......+|+.+..+     ..|+|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~-SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CSEECTTSCEEEEEEE-CSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEE-cCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            4568899999999998 4322  346788873  221              11223445555432     2599999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=2.4e-05  Score=46.30  Aligned_cols=71  Identities=17%  Similarity=0.298  Sum_probs=47.1

Q ss_pred             EEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccC----------------CCCCeeee----cCCeEEEecCC
Q psy573          121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAM----------------PEDRMSVL----PSRSLQLSDVR  178 (216)
Q Consensus       121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~----------------~~~~~~~~----~~~~l~i~~~~  178 (216)
                      +...|....+.+|+++.|.|.... ....+.|++..  ..+                ...+....    ....|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            345566778889999999998643 33568898732  100                00111111    12469999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy573          179 LEDGGEYVCEAENA  192 (216)
Q Consensus       179 ~~d~g~y~C~~~n~  192 (216)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999988643

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=2e-05  Score=46.32  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=46.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+.+|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.
T Consensus         5 esg~~~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKA-SEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEE-SSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-ccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            3445678899999999998 443  2347889873  2211               1122345554322     249999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|++.|+|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.00  E-value=2.5e-05  Score=45.16  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=40.8

Q ss_pred             EeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          130 VSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      ...|+..+|.|.+.++ | ...+.|.+||..+..+..    ....++      .|.+   ...+...|+|.|.+.....
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~sl~~   91 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHWGLEE   91 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTCSS
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEECCCCC
Confidence            3456778999999887 3 347999999987653211    111222      2433   3345568999999976543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=1.1e-05  Score=47.43  Aligned_cols=68  Identities=18%  Similarity=0.367  Sum_probs=44.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------e---------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------I---------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~---------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +....+.+|+.+.|.|.+ .+.  ....+.|++.  |+.      +         .....+|+.+..+     ..|+|.+
T Consensus         7 sg~~~~kPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKA-SGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-cCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            334568999999999987 432  2346788873  211      1         1122345555432     2499999


Q ss_pred             cCCCCCceEEEEE
Q psy573           87 SRKTDDGRYQCVV   99 (216)
Q Consensus        87 ~~~~d~g~y~C~~   99 (216)
                      ++.+|++.|+|.-
T Consensus        86 L~~eDtAvYYCAr   98 (118)
T d1nlbh1          86 LKNEDTATYFCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEee
Confidence            9999999999964

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=2.7e-05  Score=46.07  Aligned_cols=69  Identities=22%  Similarity=0.399  Sum_probs=46.1

Q ss_pred             eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccC----------------CCCCeeee----cCCeEEEecCCCC
Q psy573          123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAM----------------PEDRMSVL----PSRSLQLSDVRLE  180 (216)
Q Consensus       123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~----------------~~~~~~~~----~~~~l~i~~~~~~  180 (216)
                      ..|....+.+|+.+.|.|..... ...+.|++.  +..+                ...+....    ....|.|.+++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            34556788899999999996443 356899883  2111                01111111    1236999999999


Q ss_pred             CCeEEEEEEEcC
Q psy573          181 DGGEYVCEAENA  192 (216)
Q Consensus       181 d~g~y~C~~~n~  192 (216)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999988643

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.5e-06  Score=46.29  Aligned_cols=64  Identities=14%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCC-----eeeecCCe---EEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR-----MSVLPSRS---LQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~-----~~~~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++.++|.|.+.++ | ...+.|.+||..+....     .....+++   ...-.+...+...|+|.|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLD   87 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            45678999999886 4 34799999998764321     11112222   122234445667899999987543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.99  E-value=2.7e-05  Score=46.60  Aligned_cols=71  Identities=24%  Similarity=0.422  Sum_probs=48.0

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeC--CccC-------------CCCCeeee-----cCCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRL--GSAM-------------PEDRMSVL-----PSRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~~-------------~~~~~~~~-----~~~~l~i~~~~~  179 (216)
                      ...+....+.+|++++|.|...+..  ...+.|++.  +..+             ..++....     ....|.|.+++.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3445566788999999999987553  346899873  2111             01222222     124699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999987653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.98  E-value=1.1e-05  Score=47.39  Aligned_cols=69  Identities=14%  Similarity=0.302  Sum_probs=45.0

Q ss_pred             cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+++|+.+.|.|.+ .+..  ...+.|++.  |+.+               .....+|+.+..+     ..|+|.
T Consensus         6 esg~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKG-SGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-cCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            3445678899999999987 4322  346788873  2211               1112345444432     249999


Q ss_pred             ccCCCCCceEEEEE
Q psy573           86 DSRKTDDGRYQCVV   99 (216)
Q Consensus        86 ~~~~~d~g~y~C~~   99 (216)
                      +++.+|++.|+|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999954

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.97  E-value=1.1e-05  Score=47.25  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE---------------eccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---------------IDFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~---------------~~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+++|+.+.|.|.+ .+.  ....+.|++.  |+.               ......+|+.+..+     ..|++.+++
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAA-SGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            4578899999999998 443  2347788873  211               11223445554432     249999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|.-.
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jpth1          88 AEDTAVYYCARD   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEeec
Confidence            999999999754

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.4e-05  Score=45.30  Aligned_cols=61  Identities=20%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             CCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCeeee--cC------CeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573          133 GSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMSVL--PS------RSLQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       133 g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~--~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      +..+.|.|.+.|+ | ...+.|.+++..+........  .+      +.|.+.   ..+...|+|.|.+.....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            4578999999886 3 347999999987654322221  22      234443   345568999999876543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=1.4e-06  Score=50.14  Aligned_cols=68  Identities=22%  Similarity=0.476  Sum_probs=45.3

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-------------CCCeeee-----cCCeEEEecCCCCCCeEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-------------EDRMSVL-----PSRSLQLSDVRLEDGGEYV  186 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-------------~~~~~~~-----~~~~l~i~~~~~~d~g~y~  186 (216)
                      .+.+.+|++++|.|.... ....+.|++..  ..+.             ..+....     ....|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            356789999999998753 34569998732  2111             1111111     1135999999999999999


Q ss_pred             EEEEcCCcc
Q psy573          187 CEAENAVGK  195 (216)
Q Consensus       187 C~~~n~~~~  195 (216)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            988765553

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.96  E-value=4.8e-05  Score=44.84  Aligned_cols=68  Identities=21%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE---e-----------ccccCceEEEecCc-----EEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I-----------DFENSKRLRLVDGT-----NLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~---~-----------~~~~~~~~~~~~~~-----~l~i~~~~~   89 (216)
                      ...+.+|++++|.|.+ .+.  ....+.|++.  |+.   +           .....+|+.+..+.     .|+|.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~-SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAA-SGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CEEECTTCCEEEEEEE-ESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEE-cCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            3568899999999987 432  2346789884  111   1           11223456554332     599999999


Q ss_pred             CCCceEEEEEEc
Q psy573           90 TDDGRYQCVVKN  101 (216)
Q Consensus        90 ~d~g~y~C~~~~  101 (216)
                      +|++.|+|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999997654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=1.3e-05  Score=47.39  Aligned_cols=70  Identities=17%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +....+.+|+.++|.|.+ .+.  ....+.||+.  |+.+               .....+|+.+..+     ..|+|.+
T Consensus         7 sg~~~vkpG~sl~LsC~~-SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           7 SGPELVKPGASVKISCKA-SGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCcEECCCCCEEEEEEE-ccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            334568899999999987 332  2346789873  2211               0112335544321     1499999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        86 l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          86 LTSNDSAVYYCARED  100 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEeeecC
Confidence            999999999998653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2e-05  Score=44.97  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             ecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCcE---EEEcccCCCCCceEEEEEEcCC
Q psy573           37 AAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..|+.++|.|.+....|. ..+.|.++|..+............++.   .....+...+...|+|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            358899999998444554 589999999877432222222222322   2333345566678999998754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.95  E-value=2.3e-05  Score=45.25  Aligned_cols=65  Identities=20%  Similarity=0.364  Sum_probs=42.5

Q ss_pred             EEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccCCCC
Q psy573           35 RVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSRKTD   91 (216)
Q Consensus        35 ~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~~~d   91 (216)
                      .+++|+.+.|.|.+ .+.  ....+.|++.  |+.+              .....+|+.+..+     ..|+|.+++.+|
T Consensus         4 lvkPG~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAA-SGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCTTCCEEEEECC-CC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             EecCCCCcEEEEEE-CCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCccc
Confidence            35789999999988 432  2346789874  1111              1222345555432     259999999999


Q ss_pred             CceEEEEEE
Q psy573           92 DGRYQCVVK  100 (216)
Q Consensus        92 ~g~y~C~~~  100 (216)
                      ++.|+|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=3.4e-05  Score=45.54  Aligned_cols=70  Identities=17%  Similarity=0.364  Sum_probs=46.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe---------------ccccCceEEEecC---c--EEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDG---T--NLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~---~--~l~i~~   86 (216)
                      +....+.+|+++.|.|.+ .+..  ...+.|++.  |+.+               .....+|+.+..+   .  .|+|.+
T Consensus         8 sg~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEE-CSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCcEECCCCCEEEEEEE-cCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            445678999999999998 4432  346789873  2111               1122345544422   1  499999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        87 L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          87 LRPEDTAVYYCARDP  101 (122)
T ss_dssp             CCGGGCEEEEEEEET
T ss_pred             cCCCcceEEEEeecC
Confidence            999999999997653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.8e-05  Score=44.96  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             EEEEcccCCCCCceEEEEEEc
Q psy573           81 NLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        81 ~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      .|+|.+++.+|+|.|.|.+..
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEec
Confidence            699999999999999998764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.94  E-value=1.8e-05  Score=46.91  Aligned_cols=70  Identities=21%  Similarity=0.372  Sum_probs=46.6

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc--C----------------CCCCeeee----cCCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--M----------------PEDRMSVL----PSRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~--~----------------~~~~~~~~----~~~~l~i~~~~~  179 (216)
                      ...|....+.+|+.+.|.|..... ...+.|++....  +                ...+....    ....|.|.+++.
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL   83 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc
Confidence            345667788899999999986433 346899874321  1                01111111    123689999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|+|.|.|.+...
T Consensus        84 ~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          84 EDSAMYFCASSLR   96 (113)
T ss_dssp             GGCEEECEEEESS
T ss_pred             CCceeEEEEeecC
Confidence            9999999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.94  E-value=1.9e-05  Score=46.61  Aligned_cols=68  Identities=26%  Similarity=0.492  Sum_probs=45.6

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCc--cC-------------CCCCeeee-----cCCeEEEecCCCCCC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGS--AM-------------PEDRMSVL-----PSRSLQLSDVRLEDG  182 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~--~~-------------~~~~~~~~-----~~~~l~i~~~~~~d~  182 (216)
                      |....+.+|++++|.|...+...  .-+.|++...  .+             ..++....     ....|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            45678899999999999865432  3488987421  10             01122221     123699999999999


Q ss_pred             eEEEEEEEcC
Q psy573          183 GEYVCEAENA  192 (216)
Q Consensus       183 g~y~C~~~n~  192 (216)
                      |.|.|.....
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999987543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.94  E-value=1.8e-05  Score=46.67  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=44.6

Q ss_pred             ceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ...+.+|+++.|.|.+ .+..  ...+.|++.  |+.+              .....+|+.+..+     ..|+|.+++.
T Consensus         9 ~~~vkPG~sl~LsC~~-SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEE-ccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            3468899999999987 4432  346789873  2211              1122345555432     2499999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|...
T Consensus        88 eDtA~YYCAr~   98 (120)
T d1dn0b1          88 ADTAVYYCARP   98 (120)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccccEEEEEee
Confidence            99999999543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=6.9e-05  Score=43.05  Aligned_cols=63  Identities=17%  Similarity=0.322  Sum_probs=38.6

Q ss_pred             cCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecCc-----EEEEcccCCCCCc
Q psy573           38 AGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDGT-----NLAIQDSRKTDDG   93 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~~-----~l~i~~~~~~d~g   93 (216)
                      +|++++|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+.     .|+|.+++.+|++
T Consensus         1 PG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEEC-CSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEE-ECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            58999999998 443  3347889873  2211               12234556555332     4999999999999


Q ss_pred             eEEEEEEc
Q psy573           94 RYQCVVKN  101 (216)
Q Consensus        94 ~y~C~~~~  101 (216)
                      .|+|....
T Consensus        80 vYYCAr~~   87 (103)
T d1oari_          80 VYYCARMW   87 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeEEEC
Confidence            99997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.93  E-value=2e-05  Score=46.15  Aligned_cols=67  Identities=19%  Similarity=0.382  Sum_probs=44.7

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+              .....+|+.+..+     ..|+|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTV-SGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CSEECTTSCEEEEEEE-ESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEE-cccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            3567899999999987 432  3346789873  2211              1122334444422     2499999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999854

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.3e-06  Score=47.23  Aligned_cols=64  Identities=22%  Similarity=0.434  Sum_probs=40.9

Q ss_pred             cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573           38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .|+.++|.|.+....|.+.+.|++++..+............++      .|.+.   ..+...|.|.+....-
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence            5778999999955678889999999887743221111111122      34443   3455689999987543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.92  E-value=1.3e-05  Score=47.15  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             cceEEecCCcEEEEeeCCCCCCC---CeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHPE---PTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~~---~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ....+++|+.+.|.|.+ .+...   ..+.|++.  |+.+              .....+|+.+..+     ..|+|.++
T Consensus         8 G~~~vkPg~sl~LsC~~-SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL   86 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTV-TGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSV   86 (119)
T ss_dssp             SCSEECTTSCEEEEEEE-ESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCcEECCCCCEEEEEEE-ccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccc
Confidence            34568899999999987 44322   35689873  2221              1122344544422     24999999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      +.+|++.|+|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          87 TTEDTATYYCAGLL  100 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCceEEEEeEec
Confidence            99999999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=3.2e-05  Score=46.20  Aligned_cols=71  Identities=17%  Similarity=0.365  Sum_probs=47.0

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+++|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.
T Consensus         5 esg~~~~kPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKA-SGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEE-TTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ccCCceECCCCCeEEEEEE-eCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            4455678899999999998 432  3346788873  2211               1112335544422     149999


Q ss_pred             ccCCCCCceEEEEEEc
Q psy573           86 DSRKTDDGRYQCVVKN  101 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~  101 (216)
                      +++.+|++.|+|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999998654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=5.2e-05  Score=44.75  Aligned_cols=69  Identities=16%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cCC----------------CCCeeee----cCCeEEEecCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMP----------------EDRMSVL----PSRSLQLSDVRL  179 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~~----------------~~~~~~~----~~~~l~i~~~~~  179 (216)
                      ...|....+.+|+++.|.|..... ...+.|++...  .+.                ..+....    ....|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            344566788999999999987533 45699987321  110                0111111    123699999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.92  E-value=3.8e-05  Score=44.20  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             EeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCC----eeeecCCeEEE---ecCCCCCCeEEEEEEEcCCcc
Q psy573          130 VSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDR----MSVLPSRSLQL---SDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~----~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...|+..+|.|.+.++.  ...+.|.++|..+..+.    .....++++.+   ..+..++...|+|.|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   90 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLD   90 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            34577889999998873  34699999998765321    11112222111   233445566899999987544

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.9e-05  Score=45.59  Aligned_cols=68  Identities=19%  Similarity=0.383  Sum_probs=45.0

Q ss_pred             ceeEeCCCcEEEEEEeCCC--CCcEEEEeeCC--ccC--------C--------CCCeeeecC-----CeEEEecCCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGD--AVLTVHWKRLG--SAM--------P--------EDRMSVLPS-----RSLQLSDVRLED  181 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~--p~~~i~W~~~~--~~~--------~--------~~~~~~~~~-----~~l~i~~~~~~d  181 (216)
                      ...+.+|++++|.|...+.  ....+.|++..  ...        .        .++..+..+     .+|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3467899999999998653  34468898742  210        0        012222211     248999999999


Q ss_pred             CeEEEEEEEcCCc
Q psy573          182 GGEYVCEAENAVG  194 (216)
Q Consensus       182 ~g~y~C~~~n~~~  194 (216)
                      +|.|.|.+.+...
T Consensus        84 sa~YyCa~~~~~~   96 (110)
T d1u9ka_          84 SGLYRCVIYHPPN   96 (110)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             CEEEEEEEeCCCC
Confidence            9999999865443

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=8.5e-06  Score=47.36  Aligned_cols=69  Identities=14%  Similarity=0.237  Sum_probs=39.7

Q ss_pred             eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCC--Ce-----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573          131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPED--RM-----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA  200 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~--~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~  200 (216)
                      ..++.+.|.|.+.++.  ...|.|..++......  ..     .....+.|.|..-... .+.|+|.|.|..+......
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~~   95 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTKVDK   95 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEEEEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEEEEE
Confidence            4567899999998764  3479997766432110  00     1111234666655553 5689999999876654433

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=9.9e-06  Score=46.97  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             eCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCC---CCe----eeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573          131 SAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPE---DRM----SVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS  199 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~---~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~  199 (216)
                      ..++.+.|.|.+.++ | ...|.|.+++.....   ...    .....+.|.|..-... .|.|+|.|.+........
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTAAD   94 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCeeeE
Confidence            457889999999875 3 347999887754311   000    1111244666655553 568999999987664433

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.5e-06  Score=47.82  Aligned_cols=64  Identities=19%  Similarity=0.220  Sum_probs=42.0

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCeee-----------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMSV-----------LPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++.+.|.|.+.+. | ...|.|.+++..........           ...+.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            45689999999776 4 34799999987665432211           11234555544445566899999997654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.90  E-value=2.6e-05  Score=45.18  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=43.4

Q ss_pred             EecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEc---ccCCCCCceEEEEEEcCC
Q psy573           36 VAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~y~C~~~~~~  103 (216)
                      +..|+..+|.|.+....| ...+.|.++|..+...........+++++.+.   .+..++...|+|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            356888999999844445 45899999998765433333333444432222   234455567999998753

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=1.7e-05  Score=46.55  Aligned_cols=69  Identities=16%  Similarity=0.341  Sum_probs=45.1

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+.+|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+++.+..+     ..|+|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~-SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKA-SGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-cccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            4445678899999999987 432  2346788873  2211               1112234444321     249999


Q ss_pred             ccCCCCCceEEEEE
Q psy573           86 DSRKTDDGRYQCVV   99 (216)
Q Consensus        86 ~~~~~d~g~y~C~~   99 (216)
                      +++.+|++.|+|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999974

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=3.5e-05  Score=44.98  Aligned_cols=70  Identities=21%  Similarity=0.400  Sum_probs=46.0

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|++.
T Consensus         6 esg~~~~kPg~sl~LsC~~-SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCcEECCCCCEEEEEEE-ccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            4455678999999999998 432  2346788872  2111               1122335554422     248999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|++.|+|.-.
T Consensus        85 sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          85 SLTSDDSAVYYCANK   99 (116)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEccc
Confidence            999999999999743

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=1.5e-05  Score=46.72  Aligned_cols=68  Identities=16%  Similarity=0.328  Sum_probs=45.1

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ....+.+|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     .-|+|.++
T Consensus         8 G~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L   86 (117)
T d1jnhb1           8 GAELARPGASVKLSCRT-SGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL   86 (117)
T ss_dssp             CCEECCTTCCEEEEEEE-ESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEE-cCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence            34567899999999998 432  3356789873  2111               1122345555432     24999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|++.|+|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.89  E-value=2.9e-05  Score=45.64  Aligned_cols=70  Identities=19%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      .....+++|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+++.+..+     ..|.|.+
T Consensus         7 sG~~~~kPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~   85 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKT-SGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-ccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence            345678899999999987 332  2346788873  2211               1122334444322     2489999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|.-..
T Consensus        86 L~~eDtAvYYCAr~~  100 (118)
T d1ct8b1          86 LTTEDSAIYYCARYR  100 (118)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEEeeec
Confidence            999999999997543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.89  E-value=3.8e-05  Score=45.92  Aligned_cols=70  Identities=19%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccCC-----------------CCCeeeec--C---CeEEEe
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAMP-----------------EDRMSVLP--S---RSLQLS  175 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~--~---~~l~i~  175 (216)
                      ..++......+|+++.|.|.+.+..  ...+.|++..  ..+.                 ..+.....  .   ..|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3445566777899999999986543  3458998742  1110                 01111211  1   249999


Q ss_pred             cCCCCCCeEEEEEEEc
Q psy573          176 DVRLEDGGEYVCEAEN  191 (216)
Q Consensus       176 ~~~~~d~g~y~C~~~n  191 (216)
                      +++.+|+|.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999998753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.89  E-value=3.3e-05  Score=46.23  Aligned_cols=68  Identities=16%  Similarity=0.365  Sum_probs=45.6

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~lvkPG~Sl~LsC~~-SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~   87 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAA-SGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK   87 (135)
T ss_dssp             CCEECTTCEEEEEEEE-ESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred             CceECCCCCeEEEEEE-cCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence            4568899999999997 432  2346788873  2111               1122345555432     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999997653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.2e-05  Score=45.07  Aligned_cols=72  Identities=14%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             EeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee---------eecCCeEEEecCCCC--CCeEEEEEEEcCCcce
Q psy573          130 VSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---------VLPSRSLQLSDVRLE--DGGEYVCEAENAVGKI  196 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~--d~g~y~C~~~n~~~~~  196 (216)
                      ......+.|.|.+.++ | ...|.|.+++.........         ....+.|.|..-...  ....|+|.|.+..++.
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            3446789999999876 4 3579999988755332111         111234555544443  2348999999988776


Q ss_pred             EEEEE
Q psy573          197 SASAT  201 (216)
Q Consensus       197 ~~~~~  201 (216)
                      ...+.
T Consensus        98 ~~~v~  102 (105)
T d1dn0b2          98 EKNVP  102 (105)
T ss_dssp             EEEEE
T ss_pred             EeEEe
Confidence            66553

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.88  E-value=2.3e-05  Score=46.94  Aligned_cols=66  Identities=20%  Similarity=0.368  Sum_probs=42.6

Q ss_pred             eEEecCCcEEEEeeCCCC----CCCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccC
Q psy573           34 QRVAAGDTALLECGPPRG----HPEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ..+.+|+.++|.|.+ .+    .....+.||+.  ++.+              .....+++.+..+     ..|+|.+++
T Consensus        10 ~lvkPg~sv~LsC~~-SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~   88 (126)
T d1etzb1          10 GILQPSQTLSLTCSF-SGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD   88 (126)
T ss_dssp             SEECTTCCEEEEEEE-ESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEE-eCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence            467889999999986 32    22335679873  1111              1112334544321     259999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|...
T Consensus        89 ~eDtAvYyCAr~  100 (126)
T d1etzb1          89 TSDTATYHCARR  100 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceEEEEEe
Confidence            999999999854

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.88  E-value=4.2e-05  Score=45.17  Aligned_cols=67  Identities=13%  Similarity=0.235  Sum_probs=43.7

Q ss_pred             ceEEecCCcEEEEeeCCCCC----CCCeeEEeeC--CEEe------c--------cccCceEEEecC-----cEEEEccc
Q psy573           33 SQRVAAGDTALLECGPPRGH----PEPTLVWKKN--GHPI------D--------FENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~----~~~~~~W~~~--~~~~------~--------~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ...+.+|++++|.|.+ .+.    ....+.|++.  |+.+      .        ....+|+.+..+     ..|+|.++
T Consensus         9 ~~~vkPg~sl~LsC~~-SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIV-SGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CSEECSSSCEEEEEEE-ESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CceECCCCCEEEEEEE-cccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            4567899999999987 332    2235789883  2211      1        111234444322     24999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|++.|+|.-.
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.87  E-value=2.3e-05  Score=45.33  Aligned_cols=68  Identities=19%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe-----------------ccccCceEEEecC-----cEEEEc
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI-----------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~-----------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ....+.+|+++.|.|.+ .+.  ....+.|++.  |+.+                 .....+|+.+..+     ..|+|.
T Consensus         8 G~~~vkPG~Sl~LsC~~-SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~   86 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAA-SGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMN   86 (109)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCeECCCCCeEEEEEE-CCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEeccc
Confidence            34578899999999987 332  2346788873  2111                 1112335554432     249999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|++.|+|.-.
T Consensus        87 sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          87 NLKTEDTGIYYCVRG  101 (109)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEc
Confidence            999999999999854

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.87  E-value=3.8e-05  Score=45.29  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------e---------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------I---------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~---------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  ++.      +         .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~-SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAA-SGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             CEEEETTCCEEEEEEE-ESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-cCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            3568899999999987 332  3446788873  111      1         1122345655543     149999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999854

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.87  E-value=3.2e-05  Score=44.35  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             CCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe----eeecCCe---EEEecCCCCCCeEEEEEEEcCCcce
Q psy573          132 AGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM----SVLPSRS---LQLSDVRLEDGGEYVCEAENAVGKI  196 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~----~~~~~~~---l~i~~~~~~d~g~y~C~~~n~~~~~  196 (216)
                      .++...|.|.+.++.  ...+.|.++|..+..+..    ....+++   ...-.+...+...|+|.|.+.....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            456678999998764  347999999876543211    1112222   2222345667779999999976554

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=2.4e-05  Score=46.07  Aligned_cols=69  Identities=14%  Similarity=0.325  Sum_probs=45.0

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe------c---------cccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI------D---------FENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~------~---------~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +-...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+      .         ....+|+.+..+     ..|+|.+
T Consensus         7 sG~~~~kPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           7 SGTELVKPGASVKISCKA-SGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-ccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            334567899999999998 443  2346788873  2211      1         112335544422     2499999


Q ss_pred             cCCCCCceEEEEEE
Q psy573           87 SRKTDDGRYQCVVK  100 (216)
Q Consensus        87 ~~~~d~g~y~C~~~  100 (216)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1eapb1          86 LTSEDSAVYFCKRS   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccCCcceEEEEEEe
Confidence            99999999999743

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.85  E-value=2.8e-05  Score=46.48  Aligned_cols=70  Identities=14%  Similarity=0.371  Sum_probs=45.7

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC---c--EEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG---T--NLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~---~--~l~i~   85 (216)
                      ++....+.+|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+   .  .|+|.
T Consensus         6 esg~~~~kPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKA-SGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEC-CSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-cCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            3445668899999999998 442  2346788873  2111               1122344544422   2  38999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|++.|+|.-.
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999854

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.85  E-value=2.6e-05  Score=45.46  Aligned_cols=67  Identities=19%  Similarity=0.417  Sum_probs=44.3

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~~vkpG~sl~LsC~~-SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           9 GDSVKPGGSLKLSCAA-SGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-CccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            3568899999999987 432  2346788873  2211               1122345555422     149999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|...
T Consensus        88 ~eDtAvYYCA~~   99 (114)
T d1indh1          88 SEDTALYFCASH   99 (114)
T ss_dssp             GGGCEEEEEECG
T ss_pred             cCcccEEEECCC
Confidence            999999999743

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.85  E-value=8.4e-05  Score=43.71  Aligned_cols=68  Identities=19%  Similarity=0.377  Sum_probs=44.8

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEec-----------------cccCceEEEecC-----cEEEEcc
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPID-----------------FENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~~-----------------~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  |+.+.                 ....+|+.+..+     ..|+|.+
T Consensus         9 ~~~vkpG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCAT-SGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEE-CCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            3467899999999987 332  3457789873  22210                 111235554421     2499999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.85  E-value=2.3e-05  Score=46.55  Aligned_cols=67  Identities=18%  Similarity=0.316  Sum_probs=43.3

Q ss_pred             ceEEecCCcEEEEeeCCCC----CCCCeeEEeeC--CEE---e-----------ccccCceEEEecC-----cEEEEccc
Q psy573           33 SQRVAAGDTALLECGPPRG----HPEPTLVWKKN--GHP---I-----------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~--~~~---~-----------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ...+.+|+.++|.|.+ .+    .....+.||+.  ++.   +           .....+|+.+..+     ..|+|.++
T Consensus         9 ~~~vkpg~sv~LsC~~-SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl   87 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTF-SGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTV   87 (123)
T ss_dssp             CSEECTTCCEEEEEEE-ESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEE-cCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeec
Confidence            3567899999999986 32    22235789973  211   1           0112235544322     24999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|++.|+|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=1.8e-05  Score=46.88  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=45.6

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE---e---c---------cccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I---D---------FENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~---~---~---------~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +....+.+|+.++|.|.+ .+.  ....+.||+.  |+.   +   .         ....+|+.+..+     ..|+|.+
T Consensus         7 sg~~~~kpG~sv~LsC~~-SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTA-SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-ecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            344678899999999987 332  2346789873  221   1   0         112335544321     2499999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          86 LTSEDTAVYYCAPFG  100 (121)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             cCcCcceEEEeEeec
Confidence            999999999998653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.84  E-value=7.4e-05  Score=43.84  Aligned_cols=68  Identities=18%  Similarity=0.355  Sum_probs=45.4

Q ss_pred             ceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+++|+++.|.|.+ .+..  ...+.|++.  |+.+               .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-CCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            4568899999999987 4432  236788873  2211               1122345555432     149999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDtAvYYCAr~~  100 (118)
T d2fbjh1          88 SEDTALYYCARLH  100 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEeeEec
Confidence            9999999998654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.84  E-value=6.5e-05  Score=44.73  Aligned_cols=68  Identities=24%  Similarity=0.426  Sum_probs=44.5

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------ec---------cccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------ID---------FENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~~---------~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+++|+.+.|.|.+ .+.  ....+.|++.  |+.      +.         ....+++.+..+     ..|+|.+++
T Consensus         8 ~~lvkPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~   86 (126)
T d1rjca1           8 GGSVQAGQSLRLSCAT-SGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK   86 (126)
T ss_dssp             CEEECTTCCEEEEEEC-C-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-CCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence            4568899999999998 432  3346789873  221      11         112334544421     139999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        87 ~eDTAvYYCAr~~   99 (126)
T d1rjca1          87 PEDTAMYYCAADT   99 (126)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceeEEEeec
Confidence            9999999998553

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.83  E-value=8.9e-05  Score=43.68  Aligned_cols=70  Identities=13%  Similarity=0.295  Sum_probs=47.4

Q ss_pred             EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--ccCC-----------------CCCeee--ecCCeEEEecCCCC
Q psy573          122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMP-----------------EDRMSV--LPSRSLQLSDVRLE  180 (216)
Q Consensus       122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~-----------------~~~~~~--~~~~~l~i~~~~~~  180 (216)
                      ...|....+.+|+.+.|.|.........+.|++..  ..+.                 ..+...  .....|.|.....+
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~   84 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCC
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCcc
Confidence            34456667889999999999865555679999852  2110                 001111  12356888889999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |++.|.|.+..
T Consensus        85 dsa~Y~Ca~~~   95 (112)
T d1fo0b_          85 QGRTLYCTCSA   95 (112)
T ss_dssp             SCEEEEEEEES
T ss_pred             CCccEEEEEec
Confidence            99999998754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.1e-05  Score=40.94  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             EecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573           36 VAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  101 (216)
                      ...|..+.|.|....+.. ..--.|.|+|+.+........    ...+.+..  .+++|.|.|.+..
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~----~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----KTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----EEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC----ceEEEEec--CCCCceEEEEEcC
Confidence            357889999998733322 335679999999964322211    12355654  7899999999763

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=2.9e-05  Score=46.15  Aligned_cols=69  Identities=16%  Similarity=0.388  Sum_probs=45.5

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+++|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+++.+..+     ..|+|.
T Consensus         6 esg~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQA-SGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-cCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            3445678999999999998 442  2346788873  2111               1122345555432     249999


Q ss_pred             ccCCCCCceEEEEE
Q psy573           86 DSRKTDDGRYQCVV   99 (216)
Q Consensus        86 ~~~~~d~g~y~C~~   99 (216)
                      +++.+|++.|+|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999974

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=3e-05  Score=46.19  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCcc--C-------C-------CCCee--e--e-cCCeEEEecCCCC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSA--M-------P-------EDRMS--V--L-PSRSLQLSDVRLE  180 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~--~-------~-------~~~~~--~--~-~~~~l~i~~~~~~  180 (216)
                      |....+..|+.+.|.|.......   ..+.|++....  +       .       ..+..  .  . ....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            44567778999999999743322   24789984211  0       0       00000  0  0 1246999999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998763

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.82  E-value=2e-05  Score=46.68  Aligned_cols=68  Identities=21%  Similarity=0.403  Sum_probs=44.8

Q ss_pred             ceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEE------ec---------cccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------ID---------FENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~------~~---------~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+..  ...+.|++.  |+.      +.         ....+|+.+..+     ..|+|.+++
T Consensus         9 ~~lvkPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAA-SGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-CcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            3568899999999987 4422  345788873  221      11         112345554422     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDtAvYYCAr~~  100 (123)
T d1mqkh_          88 SEDTAMYYCVRHE  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcccceeEEecC
Confidence            9999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=7.1e-05  Score=44.05  Aligned_cols=68  Identities=18%  Similarity=0.377  Sum_probs=44.9

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ....+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.++
T Consensus         8 g~~~~kpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL   86 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKA-SGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEE-cCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence            34567899999999997 442  2346788873  2111               1122345554421     24999999


Q ss_pred             CCCCCceEEEEEE
Q psy573           88 RKTDDGRYQCVVK  100 (216)
Q Consensus        88 ~~~d~g~y~C~~~  100 (216)
                      +.+|++.|+|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1rz7h1          87 RSEDTAVYYCAAD   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccceEEEEeec
Confidence            9999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.82  E-value=2.7e-05  Score=46.15  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=45.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~-SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAA-SGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-cCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            3467899999999998 442  2346788873  2111               1122345555432     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.82  E-value=2.2e-05  Score=45.37  Aligned_cols=76  Identities=24%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRY   95 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y   95 (216)
                      +|.+.+.+.. .+..|+..+|.|.+....| ...+.|.++|+.+.... ........++      .|.+   ...+...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~y   80 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFY   80 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEE
Confidence            3455443322 2446788999999844445 45999999998874311 1111112222      2443   33455679


Q ss_pred             EEEEEcCC
Q psy573           96 QCVVKNVA  103 (216)
Q Consensus        96 ~C~~~~~~  103 (216)
                      +|.+....
T Consensus        81 tC~V~H~s   88 (101)
T d1fnga1          81 DCEVDHWG   88 (101)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.81  E-value=2.2e-05  Score=46.84  Aligned_cols=71  Identities=14%  Similarity=0.288  Sum_probs=45.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+++|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.
T Consensus         6 esg~~l~kPg~sl~LsC~~-SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRA-SGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEE-ccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            3445678899999999987 432  2346788873  2211               1122344444321     249999


Q ss_pred             ccCCCCCceEEEEEEc
Q psy573           86 DSRKTDDGRYQCVVKN  101 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~~  101 (216)
                      +++.+|++.|+|....
T Consensus        85 sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          85 SLTSEDSAVYYCARES  100 (125)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCcccceEEEEeeeC
Confidence            9999999999998653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.81  E-value=2.9e-05  Score=44.58  Aligned_cols=79  Identities=19%  Similarity=0.299  Sum_probs=45.3

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCcEE---EEcccCCCCCceEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGTNL---AIQDSRKTDDGRYQCV   98 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~l---~i~~~~~~d~g~y~C~   98 (216)
                      ||.+.+.+.. ....++.++|.|.+....| ...+.|+++|..+.... ........++++   ....+..++...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            3444443322 2456788999999843334 56999999998774321 111222223221   1123345555679999


Q ss_pred             EEcCC
Q psy573           99 VKNVA  103 (216)
Q Consensus        99 ~~~~~  103 (216)
                      +....
T Consensus        82 V~H~s   86 (98)
T d1hdmb1          82 VEHIG   86 (98)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=47.13  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             CCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCCCeee---ec------CCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          132 AGSIIVFECSVGGD-AVL-TVHWKRLGSAMPEDRMSV---LP------SRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~---~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .+..+.|.|.+.+. |.. .+.|.++|..+.......   ..      .+.|.|..-.......|+|.|.+......+
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            45678999999775 433 699999998775432111   11      234666554444567899999998654443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.8e-05  Score=44.67  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=43.2

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCCcc--CC-------------C-CCee--ee---cCCeEEEecCCCC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLGSA--MP-------------E-DRMS--VL---PSRSLQLSDVRLE  180 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~~~--~~-------------~-~~~~--~~---~~~~l~i~~~~~~  180 (216)
                      |....+..|+.+.|.|........   .+.|++....  +.             . .+..  ..   ....|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            445567789999999997443322   4889875321  10             0 0000  00   1135999999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.78  E-value=3.5e-05  Score=44.33  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCcE---EEEcccCCCCCceEEEE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGTN---LAIQDSRKTDDGRYQCV   98 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---l~i~~~~~~d~g~y~C~   98 (216)
                      +|.+.+.+.. .+..|+..+|.|.+....| ...+.|.++|..+.... ........+++   .....+..++...|+|.
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   83 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK   83 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEE
Confidence            4555544322 2456788999999844444 46899999999874211 11111222322   11223344556679999


Q ss_pred             EEcC
Q psy573           99 VKNV  102 (216)
Q Consensus        99 ~~~~  102 (216)
                      +...
T Consensus        84 V~H~   87 (99)
T d1uvqa1          84 VEHW   87 (99)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            9864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.78  E-value=2.9e-05  Score=46.25  Aligned_cols=69  Identities=16%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             cceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEE---------------eccccCceEEEecC-----cEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP---------------IDFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~---------------~~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ....+.+|+++.|.|.+ .+..  ...+.|++.  ++.               ......+|+.+..+     ..|+|.++
T Consensus         8 G~~~~kpg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL   86 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKA-SGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNL   86 (128)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEE-cCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeec
Confidence            34568899999999998 4432  235678763  111               11223445555432     24899999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      +.+|++.|+|....
T Consensus        87 ~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          87 RSDDTAVYFCAGVY  100 (128)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccCceEEEEeEEe
Confidence            99999999998654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.78  E-value=3.4e-05  Score=45.90  Aligned_cols=69  Identities=17%  Similarity=0.386  Sum_probs=45.4

Q ss_pred             cceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEccc
Q psy573           32 KSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        32 ~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ....+++|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.++
T Consensus         8 g~~~~kPg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL   86 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKA-SGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL   86 (127)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEE-cCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence            34567899999999998 432  3346788873  2211               1122345554432     24999999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      +.+|++.|+|.-..
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999998653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=3.9e-05  Score=45.58  Aligned_cols=70  Identities=16%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             cccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEc
Q psy573           30 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQ   85 (216)
Q Consensus        30 ~~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~   85 (216)
                      ++....+++|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.
T Consensus         5 esG~~~~kPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKT-TGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEE-ESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCeEEEEEE-ccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            3445678899999999997 442  2346788872  2111               1122345555421     259999


Q ss_pred             ccCCCCCceEEEEEE
Q psy573           86 DSRKTDDGRYQCVVK  100 (216)
Q Consensus        86 ~~~~~d~g~y~C~~~  100 (216)
                      +++.+|++.|+|.-.
T Consensus        84 ~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          84 SLTSEDSAVYYCARG   98 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999743

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.77  E-value=0.0001  Score=44.35  Aligned_cols=68  Identities=19%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             ceEEecCCcEEEEeeCCCC----CCCCeeEEeeC--CEE---e-----------ccccCceEEEecC-----cEEEEccc
Q psy573           33 SQRVAAGDTALLECGPPRG----HPEPTLVWKKN--GHP---I-----------DFENSKRLRLVDG-----TNLAIQDS   87 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~--~~~---~-----------~~~~~~~~~~~~~-----~~l~i~~~   87 (216)
                      ...+.+|+.++|.|.+ .+    .....+.||+.  ++.   +           .....+|+.+..+     ..|+|.++
T Consensus         9 ~~~vkpg~Sl~LsC~~-SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l   87 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSF-SGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV   87 (132)
T ss_dssp             CSEECTTCCEEEEEEE-ESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CeeECCCCCeEEEEEE-eCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence            3568899999999986 32    22236789973  111   1           1122345544321     24999999


Q ss_pred             CCCCCceEEEEEEc
Q psy573           88 RKTDDGRYQCVVKN  101 (216)
Q Consensus        88 ~~~d~g~y~C~~~~  101 (216)
                      +.+|++.|+|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999998653

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.77  E-value=2.7e-05  Score=44.75  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=41.1

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCcE---EEEcccCCCCCceEEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGTN---LAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~   99 (216)
                      |.+.+.+.. ....|+..+|.|.+....| ...+.|+++|..+.... ........+++   +....+...+...|+|.+
T Consensus         5 P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V   83 (98)
T d1d5mb1           5 PEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQV   83 (98)
T ss_dssp             CEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEE
T ss_pred             CEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEE
Confidence            444443332 2334677789999844344 45999999998773221 11111122322   333445667777899999


Q ss_pred             EcCC
Q psy573          100 KNVA  103 (216)
Q Consensus       100 ~~~~  103 (216)
                      ....
T Consensus        84 ~H~s   87 (98)
T d1d5mb1          84 EHPS   87 (98)
T ss_dssp             ECTT
T ss_pred             EECC
Confidence            8754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=5.6e-05  Score=42.55  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCee----eecC------CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .++.+.|.|.+.++.+  ..+.|.++|..+..+...    ...+      +.|.+.   ..+...|+|.|.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~L   85 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQGL   85 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSSC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECCC
Confidence            4568999999988743  368999999876543221    1122      234444   3344479999988753

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=7.4e-06  Score=47.54  Aligned_cols=63  Identities=16%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCC---eeeecC------CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR---MSVLPS------RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~---~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      ..+.+.|.|.+.+. | ...+.|.+++..+....   .....+      +.|.+..-....+..|+|.|.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            45678999999875 4 44799999987654211   011122      3455554444456789999998753

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.77  E-value=2.4e-05  Score=46.38  Aligned_cols=69  Identities=13%  Similarity=0.315  Sum_probs=44.6

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +....+.+|+.+.|.|.+ .+..  ...+.|++.  |+.+               .....+|+.+..+     ..|+|.+
T Consensus         7 sg~~~~kpg~sl~LsC~~-SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~   85 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQT-SGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS   85 (124)
T ss_dssp             CCCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred             ECCceECCCCCEEEEEEE-cCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence            444678999999999998 4422  235788873  2111               1112344444322     2499999


Q ss_pred             cCCCCCceEEEEEE
Q psy573           87 SRKTDDGRYQCVVK  100 (216)
Q Consensus        87 ~~~~d~g~y~C~~~  100 (216)
                      ++.+|++.|+|.-.
T Consensus        86 L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          86 LKPSDTALYYCARL   99 (124)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEEEeec
Confidence            99999999999644

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.77  E-value=7e-06  Score=47.76  Aligned_cols=63  Identities=14%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCC---------eeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR---------MSVLPSRSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .++.+.|.|.+.+. | ...+.|.++|.......         ..+...+.|.|..-....+..|+|.|.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999775 4 35799999987543210         0111123455554444456689999998753

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.76  E-value=3.4e-05  Score=45.84  Aligned_cols=68  Identities=22%  Similarity=0.389  Sum_probs=44.7

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------e---------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------I---------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~---------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  |+.      +         .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAA-SGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-CCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            3568899999999987 432  2346788873  211      1         1122345554432     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=4.5e-05  Score=45.10  Aligned_cols=66  Identities=20%  Similarity=0.372  Sum_probs=43.7

Q ss_pred             eEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccCC
Q psy573           34 QRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ..+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+++.
T Consensus        10 ~~vkpg~sl~LsC~~-SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAA-SGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             EEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEE-cCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            467899999999987 432  2335788873  2211               1122345544432     2599999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.75  E-value=3.1e-05  Score=46.01  Aligned_cols=68  Identities=19%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------e---------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------I---------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~---------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  ++.      +         .....+|+.+..+     ..|++.+++
T Consensus         8 ~~lvkpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAA-SGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CEECCTTCCEEEEEEE-ESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-cCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            3467899999999998 432  3346789873  111      1         1122345555432     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        87 ~eDtAvYYCAr~~   99 (124)
T d1zvya1          87 SEDTAIYTCGATR   99 (124)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CCcceEEEEeecc
Confidence            9999999998643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.7e-05  Score=46.27  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=45.2

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC--ceEEEecCc------EEEEcccCCCCCceE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS--KRLRLVDGT------NLAIQDSRKTDDGRY   95 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~--~~~~~~~~~------~l~i~~~~~~d~g~y   95 (216)
                      |.+.+-+.+.....++.++|.|.+....| ...+.|+++|..+.....  .......++      .|.+..-.......|
T Consensus         5 P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~y   84 (105)
T d1fp5a2           5 PEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEF   84 (105)
T ss_dssp             CEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGE
T ss_pred             CEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEE
Confidence            44433333333345778999999844344 469999999987743211  001111222      355555444445569


Q ss_pred             EEEEEcCC
Q psy573           96 QCVVKNVA  103 (216)
Q Consensus        96 ~C~~~~~~  103 (216)
                      +|.+....
T Consensus        85 tC~V~H~~   92 (105)
T d1fp5a2          85 ICRAVHEA   92 (105)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.6e-06  Score=48.42  Aligned_cols=67  Identities=12%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             eeEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee--------------eecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          128 TTVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS--------------VLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~--------------~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      .....++.+.|.|.+.++ | ...|.|.++|..+......              +...+.|.|..-....+..|+|.|.+
T Consensus        15 ~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H   94 (108)
T d1ow0a2          15 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGH   94 (108)
T ss_dssp             TTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEEC
T ss_pred             HHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEe
Confidence            345567889999999775 4 3379999998876532111              11112355554444446799999998


Q ss_pred             CCc
Q psy573          192 AVG  194 (216)
Q Consensus       192 ~~~  194 (216)
                      ...
T Consensus        95 ~sl   97 (108)
T d1ow0a2          95 EAL   97 (108)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            653

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.73  E-value=8.8e-07  Score=51.91  Aligned_cols=66  Identities=15%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee---eecC------CeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---VLPS------RSLQLSDVRLEDGGEYVCEAENAVGKIS  197 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~---~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~  197 (216)
                      .++.+.|.|.+.+. | ...|.|.+++..+......   ...+      +.|.+..-...+...|+|.|.+......
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~   95 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE   95 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEE
Confidence            45678999999875 4 3479999998866532111   1122      2344443344456689999999765543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=3.2e-05  Score=45.71  Aligned_cols=69  Identities=17%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      +....+++|+++.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|++.+
T Consensus         7 sG~~~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKT-SGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             CCCEEECTTCEEEEEEEE-ESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eCCceECCCCCEEEEEEE-cCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            344568899999999998 443  2346788873  1111               1122345554422     2499999


Q ss_pred             cCCCCCceEEEEEE
Q psy573           87 SRKTDDGRYQCVVK  100 (216)
Q Consensus        87 ~~~~d~g~y~C~~~  100 (216)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            99999999999754

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.72  E-value=5.6e-05  Score=44.43  Aligned_cols=69  Identities=16%  Similarity=0.346  Sum_probs=45.3

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      .....+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+
T Consensus         7 sg~~~vkpg~sl~LsC~v-SG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           7 SGAEVKKPGSSVKVSCKA-SGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             CCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-cCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            334568899999999998 432  2346788873  2111               1122345554422     2489999


Q ss_pred             cCCCCCceEEEEEE
Q psy573           87 SRKTDDGRYQCVVK  100 (216)
Q Consensus        87 ~~~~d~g~y~C~~~  100 (216)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.72  E-value=4.3e-05  Score=44.81  Aligned_cols=67  Identities=18%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe--------------ccccCceEEEecC-----cEEEEcccCC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~--------------~~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  |+.+              .....+|+.+..+     ..|+|.+++.
T Consensus         9 ~~~vkPG~Sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEA-SGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEE-CCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            3467899999999987 432  3447789873  2211              1122334444321     2499999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|.-.
T Consensus        88 eDtA~YyCAr~   98 (118)
T d1lo4h1          88 EDTAIYYCARG   98 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeccc
Confidence            99999999754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00013  Score=38.93  Aligned_cols=58  Identities=26%  Similarity=0.464  Sum_probs=39.4

Q ss_pred             eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573          131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  191 (216)
                      ..|..+.|.|.....+  ...-.|.|++..+..++... ....+.|..  .+++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-CceEEEEec--CCCCceEEEEEcC
Confidence            4577889999985543  33578999999887553221 122355554  6689999999764

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=1.1e-05  Score=46.96  Aligned_cols=64  Identities=16%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEeCCCC--CcEEEEeeCCccCCCC---CeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGDA--VLTVHWKRLGSAMPED---RMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~---~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .+..+.|.|.+.+..  ...+.|.+++......   ......+      +.|.|..-....+..|+|.|.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            356789999997764  3479999998765321   1111122      23555554445566899999986543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.5e-06  Score=47.17  Aligned_cols=63  Identities=16%  Similarity=0.327  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCC---eeeecC------CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR---MSVLPS------RSLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~---~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .++.+.|.|.+.++ | ...+.|.+++.......   .....+      +.|.+..-....+..|+|.|.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46778999999875 3 34799999987644211   111122      3355554444445689999999754

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.68  E-value=7.6e-05  Score=44.23  Aligned_cols=68  Identities=24%  Similarity=0.426  Sum_probs=44.9

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  |+.+               .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~lvkpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           9 GGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEeE-CCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            3568899999999987 332  2346788873  2111               1122345555432     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999998653

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.3e-05  Score=46.63  Aligned_cols=66  Identities=21%  Similarity=0.337  Sum_probs=39.6

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .++.++|.|.+....| ...+.|.++|...............++      .|.+..-.......|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678999999844344 459999999987643211111222232      35554443333346999998754

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.67  E-value=2.4e-05  Score=44.82  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             cCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .++.++|.|.+....|.. .+.|++++...............++      .|.+.   .++...|+|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            456899999985545654 8999999887643222222223333      24443   345567999998643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.66  E-value=2.1e-05  Score=46.32  Aligned_cols=69  Identities=17%  Similarity=0.357  Sum_probs=44.0

Q ss_pred             ccceEEecCCcEEEEeeCCCCCC--CCeeEEeeC--CEEe------c-----------cccCceEEEecC-----cEEEE
Q psy573           31 PKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI------D-----------FENSKRLRLVDG-----TNLAI   84 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~--~~~~------~-----------~~~~~~~~~~~~-----~~l~i   84 (216)
                      .....+.+|+++.|.|.+ .+..  ...+.|++.  |+.+      .           ....+|+.+..+     ..|++
T Consensus         7 SG~~~vkPG~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAA-SGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             ECCEEECTTCEEEEEEEE-ESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             ECCceECCCCCEEEEEEE-cCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            334678999999999998 4432  235688873  2211      1           111223333322     13999


Q ss_pred             cccCCCCCceEEEEEE
Q psy573           85 QDSRKTDDGRYQCVVK  100 (216)
Q Consensus        85 ~~~~~~d~g~y~C~~~  100 (216)
                      .+++.+|++.|+|...
T Consensus        86 ~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ESCCGGGCEECEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            9999999999999754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=0.00017  Score=43.15  Aligned_cols=70  Identities=16%  Similarity=0.381  Sum_probs=45.8

Q ss_pred             ccceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcc
Q psy573           31 PKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        31 ~~~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      .....+.+|+++.|.|.+ .+.  ....+.|++.  ++.+               .....+|+.+..+     ..|++.+
T Consensus         6 sG~~~vkPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           6 SGAEVNKPGSSVKVSCQA-SGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             CCCEEECTTCCEEEEEEE-SSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEE-cCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            334568899999999998 432  2336788873  2111               1122345555432     2489999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        85 L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          85 LRSDDTAVYYCASNS   99 (133)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEEeeecc
Confidence            999999999997653

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=5.9e-05  Score=41.72  Aligned_cols=53  Identities=28%  Similarity=0.692  Sum_probs=39.4

Q ss_pred             EeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecC-CCCCCeEEEEEE
Q psy573          130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV-RLEDGGEYVCEA  189 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~  189 (216)
                      .-.|.+|.|+|+..+.  ..|.|.+++..++..     .+..|.+.+. ..+++|.|.|..
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~-----~~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEEC
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCC-----CCcEEEEccccccccCcceEEec
Confidence            3468999999997543  469999999887654     2345777764 357999999974

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.65  E-value=9.4e-05  Score=44.05  Aligned_cols=68  Identities=21%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe---------------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI---------------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~---------------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+.+.|.|.+ .+.  ....+.|++.  ++.+               .....+|+.+..+     .-|+|.+++
T Consensus         9 ~~~~kpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~   87 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSS-SGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR   87 (127)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-CCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence            3567899999999987 432  2346778873  1111               1122345554422     249999999


Q ss_pred             CCCCceEEEEEEc
Q psy573           89 KTDDGRYQCVVKN  101 (216)
Q Consensus        89 ~~d~g~y~C~~~~  101 (216)
                      .+|++.|+|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999998654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.65  E-value=6.6e-05  Score=44.34  Aligned_cols=68  Identities=21%  Similarity=0.424  Sum_probs=44.6

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------ec-----------cccCceEEEecC-----cEEEEcc
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------ID-----------FENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~~-----------~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      ...+++|+.+.|.|.+ .+.  ....+.|++.  |+.      +.           ....+|+.+..+     ..|+|.+
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            3568899999999997 332  2336789873  221      10           112245555422     2499999


Q ss_pred             cCCCCCceEEEEEEc
Q psy573           87 SRKTDDGRYQCVVKN  101 (216)
Q Consensus        87 ~~~~d~g~y~C~~~~  101 (216)
                      ++.+|++.|+|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998643

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=8e-05  Score=40.66  Aligned_cols=73  Identities=16%  Similarity=0.294  Sum_probs=47.3

Q ss_pred             eCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCC-CCCeEEEEEEEcCC-cceEEEEEEEEE
Q psy573          131 SAGSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRL-EDGGEYVCEAENAV-GKISASATLTVQ  205 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~-~~~~~~~~l~v~  205 (216)
                      -.|..|.|+|+-  .....|.|.+++..+...   .........|.+.+-.. +++|.|.|.+.... ......+.|.++
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR   85 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR   85 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence            368899999974  344679999998776542   12223345677777654 68999999985432 233444555443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00014  Score=40.14  Aligned_cols=53  Identities=28%  Similarity=0.588  Sum_probs=38.1

Q ss_pred             EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCC-CCCceEEEEE
Q psy573           36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQCVV   99 (216)
Q Consensus        36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~   99 (216)
                      -..|..|+|+|+. .+  ...+.|.+++..+....        +..|.+.+.+. +++|.|.|..
T Consensus        11 SISGTtV~LTCP~-~~--~~~I~Wkkn~~~i~g~~--------~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          11 SISGTSVELTCPL-DS--DENLKWEKNGQELPQKH--------DKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EEETTEEEEECSS-CC--CTTCEEEETTEEECSCC--------CSEEEEESCCTTTSCEEEEEEC
T ss_pred             EEeCCEEEEECCC-CC--CCceEEeeccccCCCCC--------CcEEEEccccccccCcceEEec
Confidence            3579999999976 33  24699999998874222        23566777544 7999999964

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.0001  Score=41.41  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=37.6

Q ss_pred             ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcC
Q psy573           37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      ..++.++|.|.+....| ...+.|.++|+.+..... .......++      .|.+.   ..+...|+|.+...
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            34678999999844344 458899999988742211 111122222      34443   34455799999764

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.62  E-value=3.5e-05  Score=45.90  Aligned_cols=66  Identities=18%  Similarity=0.311  Sum_probs=42.4

Q ss_pred             eEEecCCcEEEEeeCCCCCC---CCeeEEeeC--CEEec--------------cccCceEEEecC-----cEEEEcccCC
Q psy573           34 QRVAAGDTALLECGPPRGHP---EPTLVWKKN--GHPID--------------FENSKRLRLVDG-----TNLAIQDSRK   89 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~--------------~~~~~~~~~~~~-----~~l~i~~~~~   89 (216)
                      ..+.+|+.+.|.|.+ .+..   ...+.|++.  |+.+.              ....+|+.+..+     ..|+|.+++.
T Consensus        10 ~lvkPg~sl~LsC~~-SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSV-TGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             SEECTTSCEEEEEEE-ESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEE-ecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            467899999999987 3322   246789883  32221              111223322211     2499999999


Q ss_pred             CCCceEEEEEE
Q psy573           90 TDDGRYQCVVK  100 (216)
Q Consensus        90 ~d~g~y~C~~~  100 (216)
                      +|++.|+|...
T Consensus        89 eDtAvYyCAr~   99 (127)
T d3cx5j1          89 EDTATYYCARS   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999743

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00017  Score=42.22  Aligned_cols=68  Identities=22%  Similarity=0.480  Sum_probs=44.8

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC------------------CCCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM------------------PEDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~------------------~~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|...  -.+.|++..  +.+                  ...+..+..   .  ..|.|.+++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3356788999999999987643  347787632  110                  012333331   1  238999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy573          179 LEDGGEYVCEAENAV  193 (216)
Q Consensus       179 ~~d~g~y~C~~~n~~  193 (216)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          88 SDDTAVYYCAVPDPD  102 (117)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             cCcceEEEEeEcCCC
Confidence            999999999876543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.61  E-value=5.6e-05  Score=45.20  Aligned_cols=68  Identities=24%  Similarity=0.418  Sum_probs=44.4

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CE---Ee-----------------ccccCceEEEecC-----cEEE
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GH---PI-----------------DFENSKRLRLVDG-----TNLA   83 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~---~~-----------------~~~~~~~~~~~~~-----~~l~   83 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  |+   .+                 .....+|+.+..+     ..|+
T Consensus         9 ~~lvkpg~sl~LsC~~-SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEA-SGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             CEECCTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CceECCCCCeEEEEEE-cCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            3457889999999997 432  2346789973  11   11                 0112234444321     2599


Q ss_pred             EcccCCCCCceEEEEEEc
Q psy573           84 IQDSRKTDDGRYQCVVKN  101 (216)
Q Consensus        84 i~~~~~~d~g~y~C~~~~  101 (216)
                      |.+++.+|++.|+|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.9e-05  Score=42.72  Aligned_cols=65  Identities=23%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCce-EEEecCc---EEEEcccCCCCCceEEEEEEcC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKR-LRLVDGT---NLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+..++|.|.+....| ...++|.++|+.+....... ....+++   ......+...+...|+|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            3568999999843344 45889999998774322111 1111222   1222233445556799999864

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.59  E-value=0.00026  Score=41.62  Aligned_cols=65  Identities=22%  Similarity=0.494  Sum_probs=44.0

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCc--cC------C-----------CCCeeeecC-----CeEEEecCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLGS--AM------P-----------EDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~--~~------~-----------~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ...+.+|+++.|.|.+.+...  ..+.|++...  .+      .           ..+..+..+     ..|.|.+++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            346788999999999987653  3478877421  00      0           123333322     24899999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997654

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=6.9e-05  Score=42.32  Aligned_cols=65  Identities=18%  Similarity=0.319  Sum_probs=38.2

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEE---EEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNL---AIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..++|.|.+....| ...+.|.++|..+.... .......++++   ....+...+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence            4567999999844344 45999999998764321 11222223221   111233455667999998643

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.8e-05  Score=45.98  Aligned_cols=65  Identities=20%  Similarity=0.297  Sum_probs=39.6

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+..++|.|.+....| ...|.|+++|..+..... .......++      .|.+..-.......|+|.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHE   91 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEET
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            4667899999844444 358999999987743211 111112222      3555554444556799999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.57  E-value=1.5e-05  Score=46.28  Aligned_cols=66  Identities=17%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..++|.|.+....| ...+.|.++|...............+      +.|.+..-.......|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            5778999999843344 46899999987653211111111222      235554443333456999998644

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.57  E-value=0.00012  Score=41.60  Aligned_cols=63  Identities=16%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             CCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCeee-----ecCCeEE---EecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSV-----LPSRSLQ---LSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~-----~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +..+.|.|.+.++.  ...+.|.+++..+.......     ..++++.   .-.+...+...|+|.|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   87 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNH   87 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETTEE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECCCC
Confidence            45689999998863  34799999998765432111     1122211   1123334445799999987543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.55  E-value=7e-05  Score=43.79  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=44.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEE------e---------ccccCceEEEecC-----cEEEEcccC
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------I---------DFENSKRLRLVDG-----TNLAIQDSR   88 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~------~---------~~~~~~~~~~~~~-----~~l~i~~~~   88 (216)
                      ...+.+|+++.|.|.+ .+.  ....+.|++.  |+.      +         .....+|+.+..+     ..|+|.+++
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~   87 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLA-SGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR   87 (117)
T ss_dssp             CCEECTTSCEEEEEEC-CHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-CCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence            4568899999999988 431  3346778873  211      1         1111235555532     249999999


Q ss_pred             CCCCceEEEEEE
Q psy573           89 KTDDGRYQCVVK  100 (216)
Q Consensus        89 ~~d~g~y~C~~~  100 (216)
                      .+|++.|+|.-.
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1b2wh1          88 PEDTAVYYCARG   99 (117)
T ss_dssp             GGGCEEEECCEE
T ss_pred             CCcceEEEEccc
Confidence            999999999643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.55  E-value=9.4e-05  Score=42.31  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             cceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCcE---EEEcccCCCCCceEEEEE
Q psy573           25 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGTN---LAIQDSRKTDDGRYQCVV   99 (216)
Q Consensus        25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---l~i~~~~~~d~g~y~C~~   99 (216)
                      |.+.+.+... ...|+..+|.|.+....| ...+.|.++|..+.... ........+++   .....+...+...|+|.+
T Consensus         3 P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V   81 (97)
T d1uvqb1           3 PTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHV   81 (97)
T ss_dssp             CEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEE
T ss_pred             CEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEE
Confidence            4444443332 345777899999844444 46999999998764211 11111122222   223344566667899999


Q ss_pred             EcCC
Q psy573          100 KNVA  103 (216)
Q Consensus       100 ~~~~  103 (216)
                      ....
T Consensus        82 ~H~s   85 (97)
T d1uvqb1          82 EHPS   85 (97)
T ss_dssp             ECTT
T ss_pred             EeCC
Confidence            8653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.8e-05  Score=44.62  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             CCCcEEEEEEeCCCC--CcEEEEeeCCccCCC--------CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573          132 AGSIIVFECSVGGDA--VLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA  198 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~  198 (216)
                      .+..+.|.|.+.++.  ...|.|.+++.....        .+......+.|.|..-... ...|+|.|.|..+....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v   94 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTKV   94 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEEE
Confidence            467799999997763  346999877643211        0111111234666544442 45799999998766543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00023  Score=42.23  Aligned_cols=64  Identities=11%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             eeEeCCCcEEEEEEeCCCCC--c-EEEEeeCCcc-CC----------------CCCeeee---c--CCeEEEecCCCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDAV--L-TVHWKRLGSA-MP----------------EDRMSVL---P--SRSLQLSDVRLEDG  182 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~--~-~i~W~~~~~~-~~----------------~~~~~~~---~--~~~l~i~~~~~~d~  182 (216)
                      ..+..|+.+.|.|.......  . .+.|++.... ++                ..+....   .  ...|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            35667899999999854432  2 2456553221 10                0111111   1  12599999999999


Q ss_pred             eEEEEEEEc
Q psy573          183 GEYVCEAEN  191 (216)
Q Consensus       183 g~y~C~~~n  191 (216)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.52  E-value=9.7e-05  Score=44.20  Aligned_cols=67  Identities=19%  Similarity=0.394  Sum_probs=44.1

Q ss_pred             ceEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe-----------------ccccCceEEEecC-----cEEEEcc
Q psy573           33 SQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI-----------------DFENSKRLRLVDG-----TNLAIQD   86 (216)
Q Consensus        33 ~~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~-----------------~~~~~~~~~~~~~-----~~l~i~~   86 (216)
                      ...+++|+.++|.|.+ .+.  ....+.|++.  |+.+                 .....+|+.+..+     ..|+|.+
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~   87 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVA-SGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS   87 (131)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEE-CCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence            3567899999999987 332  2346778873  2211                 1122345555432     2499999


Q ss_pred             cCCCCCceEEEEEE
Q psy573           87 SRKTDDGRYQCVVK  100 (216)
Q Consensus        87 ~~~~d~g~y~C~~~  100 (216)
                      ++.+|++.|+|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999854

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00057  Score=40.33  Aligned_cols=64  Identities=22%  Similarity=0.415  Sum_probs=42.6

Q ss_pred             eeEeCCCcEEEEEEeCCCC----CcEEEEeeCC--ccCC-----------------CCCeeeecC-----CeEEEecCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA----VLTVHWKRLG--SAMP-----------------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ..+.+|+++.|.|.+.|..    ...+.|++..  +.+.                 ..+.....+     ..|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4577899999999986642    2458898742  1110                 123333221     2499999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|++.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999997543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.52  E-value=0.00019  Score=42.20  Aligned_cols=63  Identities=22%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC-----------------CCCCeeeecC-----CeEEEecCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM-----------------PEDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ...+++|+++.|.|.+.|....  .+.|++..  +.+                 ...+..+..+     ..|.|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            3467889999999999876533  47887742  111                 0123333321     23899999999


Q ss_pred             CCeEEEEEE
Q psy573          181 DGGEYVCEA  189 (216)
Q Consensus       181 d~g~y~C~~  189 (216)
                      |++.|.|..
T Consensus        89 DtA~YYCAr   97 (120)
T d1dn0b1          89 DTAVYYCAR   97 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cccEEEEEe
Confidence            999999954

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=2.5e-05  Score=45.87  Aligned_cols=67  Identities=21%  Similarity=0.371  Sum_probs=42.2

Q ss_pred             eEEecCCcEEEEeeCCCCC--CCCeeEEeeC--CEEe------cc--------ccCceEEEecC-----cEEEEcccCCC
Q psy573           34 QRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI------DF--------ENSKRLRLVDG-----TNLAIQDSRKT   90 (216)
Q Consensus        34 ~~~~~G~~~~l~C~~~~~~--~~~~~~W~~~--~~~~------~~--------~~~~~~~~~~~-----~~l~i~~~~~~   90 (216)
                      ..+++|++++|.|.+ .+.  ....+.|++.  |+.+      ..        ...+|+.+..+     ..|++.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1          10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             SBCCTTSEECCEEEC-CSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             ceECCCCCeEEEEEE-eCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            356789999999998 432  2346889873  2211      10        00122222211     14889999999


Q ss_pred             CCceEEEEEEc
Q psy573           91 DDGRYQCVVKN  101 (216)
Q Consensus        91 d~g~y~C~~~~  101 (216)
                      |++.|+|....
T Consensus        89 DTAvYyCAr~~   99 (116)
T d1fn4b1          89 DTGTYYCTRDL   99 (116)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CCEEEEEEeec
Confidence            99999997554

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=2.2e-05  Score=45.46  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=38.9

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      ..+.++|.|.+....| ...+.|+++|..+............++      .|.+..-.......|+|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3567899999843334 468999999987643221111222232      35554433334456999998653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.49  E-value=4.7e-05  Score=43.51  Aligned_cols=60  Identities=13%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEeCCC-CCc-EEEEeeCCccCCCCCe---eeecCC------eEEEecCCCCCCeEEEEEEEcCCc
Q psy573          132 AGSIIVFECSVGGD-AVL-TVHWKRLGSAMPEDRM---SVLPSR------SLQLSDVRLEDGGEYVCEAENAVG  194 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~  194 (216)
                      .+..+.|.|.+.++ |.. .+.|.+++........   ....++      .|.+.   .++...|+|.|.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCCC
Confidence            34578999999876 433 7999998876543211   111222      34444   3455679999998764

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=2.3e-05  Score=45.44  Aligned_cols=65  Identities=15%  Similarity=0.249  Sum_probs=39.2

Q ss_pred             CCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           39 GDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        39 G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      +..++|.|.+....|. ..+.|+++|...............++      .|.|..........|+|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            5678999998444443 58999999987642222212222232      35555544344456999998753

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00022  Score=41.63  Aligned_cols=66  Identities=24%  Similarity=0.507  Sum_probs=43.6

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCc--c------CC------------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGS--A------MP------------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~------~~------------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|..  .-.+.|.+...  .      +.            ..+..+..+     ..|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            345678899999999998765  33578876421  0      10            122333211     238888999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999997544

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.48  E-value=0.00053  Score=40.12  Aligned_cols=67  Identities=24%  Similarity=0.398  Sum_probs=44.5

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+++|+++.|.|.+.|....  .+.|.+..  +.      +.            ..+..+..+     ..|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3467889999999999887533  47787631  10      00            123333322     2388899999


Q ss_pred             CCCeEEEEEEEcCC
Q psy573          180 EDGGEYVCEAENAV  193 (216)
Q Consensus       180 ~d~g~y~C~~~n~~  193 (216)
                      +|++.|.|......
T Consensus        89 eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          89 EDTALYYCARLHYY  102 (118)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             CcceEEEeeEecCC
Confidence            99999999865543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.9e-05  Score=44.10  Aligned_cols=72  Identities=13%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CCCceeEeCCCcEEEEEEeCCC-CC---cEEEEeeCCccCCCCCee---eecCC------eEEEecCCCCCCeEEEEEEE
Q psy573          124 GPKDTTVSAGSIIVFECSVGGD-AV---LTVHWKRLGSAMPEDRMS---VLPSR------SLQLSDVRLEDGGEYVCEAE  190 (216)
Q Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~-p~---~~i~W~~~~~~~~~~~~~---~~~~~------~l~i~~~~~~d~g~y~C~~~  190 (216)
                      +|....+..+..++|.|.+.+. |.   ..+.|.+++.........   ...++      .|.+..-....+..|+|.|.
T Consensus         7 pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~   86 (103)
T d1fp5a1           7 RPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVT   86 (103)
T ss_dssp             CCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence            3444455567888999999775 32   367788887765432111   11222      24433333334668999999


Q ss_pred             cCCcc
Q psy573          191 NAVGK  195 (216)
Q Consensus       191 n~~~~  195 (216)
                      +....
T Consensus        87 H~~l~   91 (103)
T d1fp5a1          87 HPHLP   91 (103)
T ss_dssp             CSSCS
T ss_pred             ECCCC
Confidence            87543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=0.00032  Score=41.03  Aligned_cols=66  Identities=18%  Similarity=0.382  Sum_probs=43.9

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC--------C----------CCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM--------P----------EDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~--------~----------~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|...  -.+.|++..  +.+        .          ..+..+..   .  ..|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            4457888999999999987653  357887642  111        0          12233321   1  238899999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (117)
T d1um5h1          87 SEDSAVYYCARSS   99 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecc
Confidence            9999999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=0.00028  Score=41.11  Aligned_cols=66  Identities=20%  Similarity=0.499  Sum_probs=43.4

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDV  177 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~  177 (216)
                      +....+.+|+++.|.|.+.|....  .+.|.+..  +.+       .           ..+..+..+     ..|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            345578889999999999876533  47787631  100       0           113333211     24888899


Q ss_pred             CCCCCeEEEEEEE
Q psy573          178 RLEDGGEYVCEAE  190 (216)
Q Consensus       178 ~~~d~g~y~C~~~  190 (216)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (116)
T d1mjuh1          87 TSDDSAVYYCANK   99 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCceEEEEccc
Confidence            9999999999643

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00059  Score=37.89  Aligned_cols=45  Identities=18%  Similarity=0.358  Sum_probs=37.8

Q ss_pred             CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy573          161 EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQ  205 (216)
Q Consensus       161 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~  205 (216)
                      .+.+.+..+++|.|..+...|+|.|.-.+.+..|.  ..+++.|.+.
T Consensus        54 ~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          54 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            34566778899999999999999999999999987  6667777664

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00052  Score=40.39  Aligned_cols=67  Identities=21%  Similarity=0.448  Sum_probs=44.6

Q ss_pred             CCceeEeCCCcEEEEEEeCCCCCc--EEEEeeCCc--cC-------C-----------CCCeeeec---CC--eEEEecC
Q psy573          125 PKDTTVSAGSIIVFECSVGGDAVL--TVHWKRLGS--AM-------P-----------EDRMSVLP---SR--SLQLSDV  177 (216)
Q Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~--~~-------~-----------~~~~~~~~---~~--~l~i~~~  177 (216)
                      +....+++|+++.|.|.+.|....  .+.|++...  .+       .           ..+..+..   .+  .|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            345578899999999999887533  478877321  10       0           12333321   12  3888999


Q ss_pred             CCCCCeEEEEEEEc
Q psy573          178 RLEDGGEYVCEAEN  191 (216)
Q Consensus       178 ~~~d~g~y~C~~~n  191 (216)
                      +.+|.+.|.|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999997653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.44  E-value=0.00028  Score=40.69  Aligned_cols=65  Identities=22%  Similarity=0.444  Sum_probs=42.7

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC--------------------CCCCeeeec---C--CeEEEec
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM--------------------PEDRMSVLP---S--RSLQLSD  176 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~--------------------~~~~~~~~~---~--~~l~i~~  176 (216)
                      ....+.+|+++.|.|.+.|....  .+.|.+..  +.+                    -..+..+..   .  ..|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            34567889999999999876433  47776631  100                    012333332   1  2388889


Q ss_pred             CCCCCCeEEEEEEE
Q psy573          177 VRLEDGGEYVCEAE  190 (216)
Q Consensus       177 ~~~~d~g~y~C~~~  190 (216)
                      ++.+|++.|.|.-.
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999753

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00031  Score=41.01  Aligned_cols=64  Identities=25%  Similarity=0.486  Sum_probs=43.1

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeC--CccC-----------------CCCCeeeecC-----CeEEEecCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRL--GSAM-----------------PEDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ...+++|+++.|.|.+.|...  -.+.|++.  ++.+                 -..+..+..+     ..|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            346788999999999987753  34788774  1111                 0123333311     24889999999


Q ss_pred             CCeEEEEEEE
Q psy573          181 DGGEYVCEAE  190 (216)
Q Consensus       181 d~g~y~C~~~  190 (216)
                      |.+.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.43  E-value=0.00035  Score=40.84  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=43.0

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC------------------CCCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|...  -.+.|.+..  +.+                  -..+..+..+     ..|.|.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            3446778999999999987643  347787631  100                  0123333321     238889999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jnhb1          88 SEDSAVYSCSRG   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.43  E-value=0.00029  Score=40.98  Aligned_cols=63  Identities=25%  Similarity=0.509  Sum_probs=42.1

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--cc------C-C-----------CCCeeeec---CC--eEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SA------M-P-----------EDRMSVLP---SR--SLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~------~-~-----------~~~~~~~~---~~--~l~i~~~~~  179 (216)
                      ...+.+|+++.|.|.+.|...  ..+.|++..  +.      + .           ..+..+..   .+  .|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            346889999999999987643  347787632  10      1 0           12333332   12  389999999


Q ss_pred             CCCeEEEEEE
Q psy573          180 EDGGEYVCEA  189 (216)
Q Consensus       180 ~d~g~y~C~~  189 (216)
                      +|.+.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.43  E-value=0.00029  Score=41.21  Aligned_cols=64  Identities=19%  Similarity=0.454  Sum_probs=42.0

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--cc------C-C-----------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SA------M-P-----------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~------~-~-----------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|...  -.+.|.+..  +.      + +           ..+..+..+     ..|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            3356788999999999987643  347787632  10      1 0           112222211     238899999


Q ss_pred             CCCCeEEEEEE
Q psy573          179 LEDGGEYVCEA  189 (216)
Q Consensus       179 ~~d~g~y~C~~  189 (216)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (118)
T d1nlbh1          88 NEDTATYFCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceEEEEee
Confidence            99999999954

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.1e-05  Score=44.88  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             ccceEec-ccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCce--EEE---ecC------cEEEEcccCCC
Q psy573           24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKR--LRL---VDG------TNLAIQDSRKT   90 (216)
Q Consensus        24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~--~~~---~~~------~~l~i~~~~~~   90 (216)
                      +|.+.+. |....+..|+.++|.|.+....| ...+.|+++|+.+.......  ...   ..+      +.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            3444433 32334556889999999844445 34899999998874321110  000   111      23555444433


Q ss_pred             CCceEEEEEEcCC
Q psy573           91 DDGRYQCVVKNVA  103 (216)
Q Consensus        91 d~g~y~C~~~~~~  103 (216)
                      ....|+|.+....
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            3456999998654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.00066  Score=38.86  Aligned_cols=62  Identities=19%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             CCCcEEEEEEeCCCCC--cEEEEeeCC--ccC------------------CCCCeeeecC-----CeEEEecCCCCCCeE
Q psy573          132 AGSIIVFECSVGGDAV--LTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDGGE  184 (216)
Q Consensus       132 ~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~~~d~g~  184 (216)
                      +|+++.|.|.+.|...  -.+.|++..  +.+                  ...+..+..+     ..|.|.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            4789999999987643  357887632  111                  0123333322     248999999999999


Q ss_pred             EEEEEEcCC
Q psy573          185 YVCEAENAV  193 (216)
Q Consensus       185 y~C~~~n~~  193 (216)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999765443

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.42  E-value=0.00012  Score=42.77  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             eeEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCeee---ecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          128 TTVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSV---LPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .....+..+.|.|.+.++.  ...+.|.++|..+.......   ..+      +.|.+..-..  ...|+|.|.+....
T Consensus        19 ~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          19 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            3455677899999998764  33699999988665432111   111      2344433322  33799999987554

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=7.6e-05  Score=43.59  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             cCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEE--EecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLR--LVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~--~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..++|.|.+....|. ..+.|.++|..+.........  ...++      .|.|..-.......|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            46789999998444443 589999999876321110000  01122      35554444333557999998654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.41  E-value=0.00041  Score=40.55  Aligned_cols=67  Identities=24%  Similarity=0.386  Sum_probs=44.4

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------C-----------CCCeeeecC-----CeEEEecCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------P-----------EDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------~-----------~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ...+.+|+++.|.|.+.+..  .-.+.|++..  +.+      .           ..+..+..+     ..|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            34678899999999998764  3357887742  111      0           122233211     24899999999


Q ss_pred             CCeEEEEEEEcCC
Q psy573          181 DGGEYVCEAENAV  193 (216)
Q Consensus       181 d~g~y~C~~~n~~  193 (216)
                      |.+.|.|......
T Consensus        89 DtAvYyCAr~~~~  101 (116)
T d7fabh1          89 DTAVYYCARNLIA  101 (116)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cceEEEeeeecCC
Confidence            9999999865443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=6.3e-05  Score=42.91  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             CCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCee----eecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      +..+.|.|.+.++.+  ..++|.++|..+......    ...+      ..|.+   ...+...|+|.|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~L~   86 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEGLP   86 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTCS
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECcCC
Confidence            457899999988754  368999998866432111    1111      22333   334456799999987543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.00029  Score=41.23  Aligned_cols=64  Identities=17%  Similarity=0.413  Sum_probs=42.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|....  .+.|.+..  +.      +.            ..+..+..+     ..|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            44567889999999999877533  47887632  11      10            012222211     248889999


Q ss_pred             CCCCeEEEEEE
Q psy573          179 LEDGGEYVCEA  189 (216)
Q Consensus       179 ~~d~g~y~C~~  189 (216)
                      .+|.+.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999954

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.40  E-value=7.4e-05  Score=44.55  Aligned_cols=66  Identities=12%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             EeCCCcEEEEEEeCCC-C---CcEEEEeeCCccCCCCC---eeeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          130 VSAGSIIVFECSVGGD-A---VLTVHWKRLGSAMPEDR---MSVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       130 ~~~g~~~~l~C~~~~~-p---~~~i~W~~~~~~~~~~~---~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...++.+.|.|.+.+. |   ...+.|.+++.......   .....++      .|.|..-.......|+|.|.+....
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~  107 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  107 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCC
Confidence            3467889999999775 3   34789999987654321   1112222      3443333333466899999987643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00035  Score=40.27  Aligned_cols=64  Identities=16%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             CCCcEEEEEEeCCC-CC--cEEEEeeCCccCCCC--------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          132 AGSIIVFECSVGGD-AV--LTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       132 ~g~~~~l~C~~~~~-p~--~~i~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      .++.+.|.|.+.++ |.  ..+.|.+++......        .......+.|.|..........|+|.|.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999885 43  357888877654211        011112234666666666677899999986554

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.38  E-value=0.00021  Score=41.11  Aligned_cols=62  Identities=21%  Similarity=0.409  Sum_probs=39.9

Q ss_pred             eEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC-----------------CCCCeeeecC-----CeEEEecCCCCCC
Q psy573          129 TVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLPS-----RSLQLSDVRLEDG  182 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~d~  182 (216)
                      .+++|+++.|.|.+.+..  ...+.|++..  +.+                 ...+..+..+     ..|.|.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            467899999999997753  3347787742  111                 0123333321     2489999999999


Q ss_pred             eEEEEEEE
Q psy573          183 GEYVCEAE  190 (216)
Q Consensus       183 g~y~C~~~  190 (216)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00063  Score=40.06  Aligned_cols=65  Identities=20%  Similarity=0.448  Sum_probs=43.1

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC-------C-----------CCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM-------P-----------EDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~-------~-----------~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+.+|+.+.|.|.+.+..  ...+.|++..  +.+       .           ..+..+..   .  ..|.|.+++
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            344678899999999997764  3357887742  111       0           11332321   1  238899999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|.+.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (120)
T d1pg7x1          88 SNDSAVYYCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeeec
Confidence            999999999865

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00046  Score=40.49  Aligned_cols=66  Identities=23%  Similarity=0.447  Sum_probs=43.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--cc------C------------CCCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SA------M------------PEDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~------~------------~~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|....  .+.|++..  +.      +            -..+..+..   .  ..|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            34567889999999999886533  47787632  10      0            012333331   1  238889999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (119)
T d1rz7h1          88 SEDTAVYYCAADP  100 (119)
T ss_dssp             GGGCEEEEEEECT
T ss_pred             cccceEEEEeecC
Confidence            9999999997643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=1.6e-05  Score=46.20  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceE
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRY   95 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y   95 (216)
                      +|.+.+.+.+.....++.++|.|.+....| ...+.|+++|..+..... .......++      .|.+..........|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            344444333322234778999999843344 458999999987743211 111122222      344444332334469


Q ss_pred             EEEEEcC
Q psy573           96 QCVVKNV  102 (216)
Q Consensus        96 ~C~~~~~  102 (216)
                      +|.+...
T Consensus        85 tC~V~H~   91 (102)
T d1rzfl2          85 SCQVTHE   91 (102)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999874

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.35  E-value=0.00058  Score=40.12  Aligned_cols=63  Identities=25%  Similarity=0.480  Sum_probs=42.2

Q ss_pred             eeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC--------C----------CCCeeeecC---C--eEEEecCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM--------P----------EDRMSVLPS---R--SLQLSDVRLE  180 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~--------~----------~~~~~~~~~---~--~l~i~~~~~~  180 (216)
                      ..+.+|+++.|.|.+.|..  ...+.|.+..  +.+        .          ..+..+..+   +  .|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            4677899999999998764  3357787632  111        0          113333322   2  3888999999


Q ss_pred             CCeEEEEEEE
Q psy573          181 DGGEYVCEAE  190 (216)
Q Consensus       181 d~g~y~C~~~  190 (216)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.0004  Score=40.64  Aligned_cols=64  Identities=19%  Similarity=0.437  Sum_probs=41.8

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeC--CccC------------------CCCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRL--GSAM------------------PEDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~~------------------~~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|..  ...+.|.+.  ++.+                  ...+..+..   .  ..|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~   87 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence            445678899999999998764  334677663  1100                  011223321   1  248889999


Q ss_pred             CCCCeEEEEEE
Q psy573          179 LEDGGEYVCEA  189 (216)
Q Consensus       179 ~~d~g~y~C~~  189 (216)
                      .+|.+.|.|.-
T Consensus        88 ~eDtAvYYCAr   98 (117)
T d1mfah1          88 SEDSAVYYCTR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEec
Confidence            99999999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00028  Score=41.29  Aligned_cols=64  Identities=20%  Similarity=0.513  Sum_probs=41.8

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeC--Ccc------CC------------CCCeeeec---C--CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRL--GSA------MP------------EDRMSVLP---S--RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~------~~------------~~~~~~~~---~--~~l~i~~~~~  179 (216)
                      ...+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.            ..+..+..   .  ..|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            34678899999999997763  334778763  111      10            11222221   1  2488999999


Q ss_pred             CCCeEEEEEEE
Q psy573          180 EDGGEYVCEAE  190 (216)
Q Consensus       180 ~d~g~y~C~~~  190 (216)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (115)
T d1f3dh1          89 EDSAVYYCAND   99 (115)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCcEEEEEecc
Confidence            99999999643

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.34  E-value=4.8e-05  Score=46.00  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             eEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe---------------eeecCCeEEEecCCCCCCe-EEEEEEE
Q psy573          129 TVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM---------------SVLPSRSLQLSDVRLEDGG-EYVCEAE  190 (216)
Q Consensus       129 ~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~---------------~~~~~~~l~i~~~~~~d~g-~y~C~~~  190 (216)
                      ....+..+.|.|.+.++.  ...|.|.++|..+.....               .+...+.|.+..-...+.| .|+|.|.
T Consensus        16 e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~   95 (127)
T d1ogae2          16 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ   95 (127)
T ss_dssp             HHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             HhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEE
Confidence            344567789999998764  346999999876643211               1111234666655555544 7999999


Q ss_pred             cCCc
Q psy573          191 NAVG  194 (216)
Q Consensus       191 n~~~  194 (216)
                      +...
T Consensus        96 H~~l   99 (127)
T d1ogae2          96 FYGL   99 (127)
T ss_dssp             ECCB
T ss_pred             ECCC
Confidence            8644

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.34  E-value=0.00085  Score=40.03  Aligned_cols=66  Identities=21%  Similarity=0.463  Sum_probs=43.6

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+++|+++.|.|.+.|..  .-.+.|++..  +.+       .           ..+..+..+     ..|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            34678899999999998764  3347787631  111       0           123333321     2488999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|.+.|.|.....
T Consensus        89 eDTAvYYCAr~~~  101 (135)
T d1ieha_          89 EDTAVYYCAKYSG  101 (135)
T ss_dssp             SSCEEEEEEEBSS
T ss_pred             ccceeeEEEEecC
Confidence            9999999976543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00084  Score=39.57  Aligned_cols=66  Identities=23%  Similarity=0.462  Sum_probs=43.7

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC-------C-----------CCCeeeec---C--CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM-------P-----------EDRMSVLP---S--RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~-------~-----------~~~~~~~~---~--~~l~i~~~~  178 (216)
                      ....+.+|+.+.|.|.+.|..  ...+.|++..  +.+       .           ..+..+..   .  ..|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            445688899999999997754  3358887742  111       0           11232321   1  238899999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1j05b_          88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             cCcceEEEeEeec
Confidence            9999999997643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00044  Score=41.05  Aligned_cols=66  Identities=18%  Similarity=0.411  Sum_probs=43.1

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC------------------CCCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|....  .+.|.+..  +.+                  -..+..+..+     ..|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            44577889999999999876432  47776631  100                  0123333211     238889999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAR~~  100 (125)
T d1rihh1          88 SEDSAVYYCARES  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEeeeC
Confidence            9999999997643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.31  E-value=0.00027  Score=40.41  Aligned_cols=63  Identities=11%  Similarity=-0.010  Sum_probs=37.5

Q ss_pred             CCcEEEEEEeCCCCC--cEEEEeeCCccCCCC--------CeeeecCCeEE---EecCCCCCCeEEEEEEEcCCcc
Q psy573          133 GSIIVFECSVGGDAV--LTVHWKRLGSAMPED--------RMSVLPSRSLQ---LSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       133 g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~--------~~~~~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ...+.|.|.+.++.+  ..+.|.+|+..+...        ......++++.   .-.+...+...|+|.|.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            346899999988754  368999988654211        11111223221   1233445556899999876543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.31  E-value=0.00062  Score=39.83  Aligned_cols=65  Identities=18%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|..  .-.+.|.+..  +.+       .           ..+..+..+     ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            445778899999999998764  3347776631  110       0           112222211     248889999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|.+.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00048  Score=40.41  Aligned_cols=65  Identities=18%  Similarity=0.447  Sum_probs=42.6

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.|....  .+.|++..  +.      +.            ..+..+..+     ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34567889999999999876433  47887631  11      11            112222211     248899999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1eapb1          88 SEDSAVYFCKRS   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEEEe
Confidence            999999999653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=4.5e-05  Score=44.61  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             ccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEE--ecC------cEEEEcccCCCCCce
Q psy573           24 REEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRL--VDG------TNLAIQDSRKTDDGR   94 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~--~~~------~~l~i~~~~~~d~g~   94 (216)
                      +|.+.+.+.+.....+..++|.|.+....|. ..+.|+++|.............  ..+      +.|.|..-.......
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            3444443332222246789999998444443 5899999998763221111000  111      235555544344446


Q ss_pred             EEEEEEcCC
Q psy573           95 YQCVVKNVA  103 (216)
Q Consensus        95 y~C~~~~~~  103 (216)
                      |+|.+....
T Consensus        85 ytC~V~H~~   93 (107)
T d1c5cl2          85 YACEVTHQG   93 (107)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.00077  Score=40.12  Aligned_cols=66  Identities=18%  Similarity=0.447  Sum_probs=43.6

Q ss_pred             CceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------------------CCCCeeeec---CC--eEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP---SR--SLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------------------~~~~~~~~~---~~--~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|..  .-.+.|.+..  +.+                  -..+..+..   .+  .|.|.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            445678899999999998764  3347787632  111                  012333331   12  38889999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (130)
T d1rhhb1          87 SDDTAVYYCARDF   99 (130)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCcEEEEEEeec
Confidence            9999999997653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.30  E-value=5.5e-05  Score=44.20  Aligned_cols=79  Identities=8%  Similarity=0.142  Sum_probs=43.9

Q ss_pred             ccceEecc-cceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCc-e
Q psy573           24 REEFRVQP-KSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDG-R   94 (216)
Q Consensus        24 ~~~~~~~~-~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g-~   94 (216)
                      +|.+.+-+ ....+..+..++|.|.+....|. ..+.|.++|..+............+      +.|.+.   .++.| .
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~~~   84 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLDKE   84 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGGSC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCCCe
Confidence            34454443 33345567889999998444443 4899999887663211111111112      234443   33433 5


Q ss_pred             EEEEEEcCCCC
Q psy573           95 YQCVVKNVAGT  105 (216)
Q Consensus        95 y~C~~~~~~~~  105 (216)
                      |+|.+......
T Consensus        85 ytC~V~H~s~~   95 (107)
T d1hxmb2          85 HRCIVRHENNK   95 (107)
T ss_dssp             EEEEEEETTSG
T ss_pred             EEEEEEECCCC
Confidence            99999875443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.30  E-value=0.00034  Score=40.84  Aligned_cols=65  Identities=22%  Similarity=0.426  Sum_probs=43.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------C-----------CCCeeeecC-----CeEEEecCCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------P-----------EDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------~-----------~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ...+.+|+++.|.|.+.|..  .-.+.|++..  +.+      .           ..+..+..+     ..|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            34678899999999998764  3357787742  111      0           012222211     24899999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |.+.|.|.-..
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.30  E-value=0.00042  Score=40.86  Aligned_cols=66  Identities=23%  Similarity=0.442  Sum_probs=43.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+++|+++.|.|.+.|...  -.+.|++..  +.      +.            ..+..+..+     ..|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            346788999999999987643  347787632  10      10            112333211     2388999999


Q ss_pred             CCCeEEEEEEEcC
Q psy573          180 EDGGEYVCEAENA  192 (216)
Q Consensus       180 ~d~g~y~C~~~n~  192 (216)
                      +|.+.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (123)
T d1mqkh_          89 EDTAMYYCVRHEY  101 (123)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcccceeEEecCC
Confidence            9999999976543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00063  Score=40.31  Aligned_cols=64  Identities=22%  Similarity=0.503  Sum_probs=42.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....++.|+++.|.|.+.|....  .+.|.+..  +.+       +           ..+..+..+     ..|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            44578889999999999886533  47787631  111       0           112333321     238888999


Q ss_pred             CCCCeEEEEEE
Q psy573          179 LEDGGEYVCEA  189 (216)
Q Consensus       179 ~~d~g~y~C~~  189 (216)
                      .+|.+.|.|.-
T Consensus        88 ~eDtAvYYCAR   98 (127)
T d1n0xh1          88 SADTAVYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            99999999964

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.30  E-value=0.00052  Score=40.63  Aligned_cols=65  Identities=25%  Similarity=0.472  Sum_probs=43.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+.+|+++.|.|.+.|...  -.+.|.+..  +.+       .           ..+..+..+     ..|.|.+++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            346778999999999987653  357887742  111       0           112223211     2388899999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (124)
T d1zvya1          88 EDTAIYTCGATR   99 (124)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeecc
Confidence            999999997643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=8.9e-05  Score=42.95  Aligned_cols=65  Identities=11%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             eCCCcEEEEEEeCCC-CC---cEEEEeeCCccCCCCCe---eeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573          131 SAGSIIVFECSVGGD-AV---LTVHWKRLGSAMPEDRM---SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK  195 (216)
Q Consensus       131 ~~g~~~~l~C~~~~~-p~---~~i~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~  195 (216)
                      ..+..+.|.|.+.+. |.   ..+.|.+++..+.....   ....++      .|.|..-....+..|+|.|.+....
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l~   91 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP   91 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCCC
Confidence            346678999999764 32   47899998876543211   111222      3443333333455799999987643

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.29  E-value=0.00065  Score=40.34  Aligned_cols=66  Identities=21%  Similarity=0.493  Sum_probs=43.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCCc--cC------------------CCCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLGS--AM------------------PEDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~--~~------------------~~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.+....  .+.|.+...  .+                  -..+..+..+     ..|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34567889999999999887533  467766311  00                  0123333321     238888999


Q ss_pred             CCCCeEEEEEEEc
Q psy573          179 LEDGGEYVCEAEN  191 (216)
Q Consensus       179 ~~d~g~y~C~~~n  191 (216)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00017  Score=41.82  Aligned_cols=66  Identities=21%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             cCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573           38 AGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA  103 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~  103 (216)
                      .+..++|.|.+....|.. .+.|+++|..+............++      .|.|..-.......|+|.+....
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            345689999984435543 8999999998753322222222232      35555443334456999998753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0016  Score=36.71  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCcEEE-EeeCCccCCC--CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDAVLTVH-WKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT  201 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~~i~-W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~  201 (216)
                      ...+.+|+.+.+.|.+. .|..++. |...+..+..  .........-++|.++...+.|.|.|.+... |....+..
T Consensus        14 ~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~y   89 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYKTNY   89 (95)
T ss_dssp             EEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEEEEE
T ss_pred             EEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEE
Confidence            35778899999999986 5555654 4445554432  2344445667999999999999999999765 34333433

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.28  E-value=0.00023  Score=40.41  Aligned_cols=65  Identities=12%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCc--eEEEecCcE---EEEcccCCCCCceEEEEEEcC
Q psy573           38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSK--RLRLVDGTN---LAIQDSRKTDDGRYQCVVKNV  102 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~---l~i~~~~~~d~g~y~C~~~~~  102 (216)
                      .+..++|.|.+....| ...+.|.++|..+......  ......+++   .....+...+...|+|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            3567899999844344 4589999999887432211  111122222   112233345556799999864

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00035  Score=41.18  Aligned_cols=64  Identities=19%  Similarity=0.442  Sum_probs=42.0

Q ss_pred             eeEeCCCcEEEEEEeCCCC--CcEEEEeeC--CccC------------------CCCCeeeec---C--CeEEEecCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA--VLTVHWKRL--GSAM------------------PEDRMSVLP---S--RSLQLSDVRLE  180 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p--~~~i~W~~~--~~~~------------------~~~~~~~~~---~--~~l~i~~~~~~  180 (216)
                      ..+.+|+++.|.|.+.+..  .-.+.|++.  ++.+                  ...+..+..   .  ..|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            4677899999999987653  234788763  1111                  012333321   1  23889999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |.+.|.|....
T Consensus        90 DsAvYYCA~~~  100 (119)
T d1qnzh_          90 DSAVYYCAIHY  100 (119)
T ss_dssp             GCEEEEEEECS
T ss_pred             ceeEEEEEEec
Confidence            99999996543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.27  E-value=0.00068  Score=40.05  Aligned_cols=65  Identities=20%  Similarity=0.394  Sum_probs=42.4

Q ss_pred             CceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+..|+++.|.|.+.|....  .+.|.+..  +.+       .           ..+..+..+     ..|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            44577889999999999876533  36776631  100       0           123333211     248889999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|.+.|.|...
T Consensus        88 ~eDTA~YYCAR~   99 (124)
T d2b1hh1          88 PSDTALYYCARL   99 (124)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeec
Confidence            999999999543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.25  E-value=0.00081  Score=39.66  Aligned_cols=65  Identities=23%  Similarity=0.471  Sum_probs=42.6

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+.+|+++.|.|.+.+...  -.+.|++..  +.      +.            ..+..+..+     ..|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            346778999999999987643  347787631  10      00            123333211     2488899999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997654

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0023  Score=35.51  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             ecCCcEEEEeeCCCC-CCCCeeEEeeCC--EEe--------ccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573           37 AAGDTALLECGPPRG-HPEPTLVWKKNG--HPI--------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT  105 (216)
Q Consensus        37 ~~G~~~~l~C~~~~~-~~~~~~~W~~~~--~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  105 (216)
                      ..|+.+.|.-...+. .....+.|.+.+  ..+        .......+.+..+++|.|..+...|+|.|...+.+..|.
T Consensus         9 aL~~di~ldIP~fq~~~~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk   88 (101)
T d1hnfa1           9 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGK   88 (101)
T ss_dssp             ETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSC
T ss_pred             cccCCccccCCCccccCCcceeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCc
Confidence            456777776543221 123478898842  222        123344577788899999999999999999999998876


Q ss_pred             cc-cceeEEEE
Q psy573          106 RE-STDAVLRV  115 (216)
Q Consensus       106 ~~-~~~~~l~v  115 (216)
                      .. ..++.|.|
T Consensus        89 ~vlektf~LkI   99 (101)
T d1hnfa1          89 NVLEKIFDLKI   99 (101)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EeeeeeEEEEe
Confidence            43 33444444

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.23  E-value=0.0007  Score=39.85  Aligned_cols=64  Identities=23%  Similarity=0.448  Sum_probs=42.1

Q ss_pred             eeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--ccC------C------------CCCeeeecC-----CeEEEecCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SAM------P------------EDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~~------~------------~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ..+.+|+++.|.|.+.+....  .+.|++..  +.+      .            ..+..+..+     ..|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            467789999999999876432  47787632  111      0            112333221     24899999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.22  E-value=0.00075  Score=40.03  Aligned_cols=65  Identities=23%  Similarity=0.473  Sum_probs=42.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC--------C----------CCCeeeec---CC--eEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM--------P----------EDRMSVLP---SR--SLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~--------~----------~~~~~~~~---~~--~l~i~~~~~  179 (216)
                      ...+++|+++.|.|.+.|...  -.+.|.+..  +.+        .          ..+..+..   .+  .|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            346788999999999987643  347887632  111        0          11233321   12  388999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.19  E-value=0.00077  Score=39.90  Aligned_cols=64  Identities=19%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC-------C-----------CCCeeeecC-----CeEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM-------P-----------EDRMSVLPS-----RSLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~-------~-----------~~~~~~~~~-----~~l~i~~~~  178 (216)
                      ....+++|+++.|.|.+.|...  -.+.|.+..  +.+       .           ..+..+..+     ..|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            4457788999999999987643  347787631  100       0           123333211     248889999


Q ss_pred             CCCCeEEEEEE
Q psy573          179 LEDGGEYVCEA  189 (216)
Q Consensus       179 ~~d~g~y~C~~  189 (216)
                      .+|.+.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.19  E-value=9.7e-06  Score=47.31  Aligned_cols=67  Identities=22%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             cCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573           38 AGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG  104 (216)
Q Consensus        38 ~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~  104 (216)
                      .+..++|.|.+....|. ..+.|+++|..+............++      .|.+......+...|+|.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            46778999998443443 58999999998753222111112222      233333333345579999987543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.0014  Score=38.72  Aligned_cols=64  Identities=27%  Similarity=0.486  Sum_probs=42.3

Q ss_pred             eeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------------------CCCCeeeecC-----CeEEEecCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLE  180 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~~~  180 (216)
                      ..+.+|+++.|.|.+.+..  ...+.|++..  +.+                  -..+..+..+     ..|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            4678899999999997764  2347777632  100                  0123333321     24888999999


Q ss_pred             CCeEEEEEEEc
Q psy573          181 DGGEYVCEAEN  191 (216)
Q Consensus       181 d~g~y~C~~~n  191 (216)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999997653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=44.20  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=45.4

Q ss_pred             ccceEecc-cceEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc--------------CceEEEecCcEEEEccc
Q psy573           24 REEFRVQP-KSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN--------------SKRLRLVDGTNLAIQDS   87 (216)
Q Consensus        24 ~~~~~~~~-~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--------------~~~~~~~~~~~l~i~~~   87 (216)
                      ||.+.+.+ ....+..+..++|.|.+....| ...+.|+++|+.+....              .+.+..  .+.|.+...
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~--sS~L~v~~~   81 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL--SSRLRVSAT   81 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEE--EEEEEEEHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEE--EEEEEECHH
Confidence            45555433 2233455778999999844444 34899999998773211              111111  134666555


Q ss_pred             CCCCCc-eEEEEEEcC
Q psy573           88 RKTDDG-RYQCVVKNV  102 (216)
Q Consensus        88 ~~~d~g-~y~C~~~~~  102 (216)
                      .-.+.| .|+|.+...
T Consensus        82 ~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          82 FWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHTCTTCEEEEEEEEC
T ss_pred             HhCCCCCEEEEEEEEC
Confidence            545555 599999764

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.18  E-value=0.001  Score=39.32  Aligned_cols=64  Identities=23%  Similarity=0.466  Sum_probs=42.2

Q ss_pred             ceeEeCCCcEEEEEEeCCCCCc--EEEEeeCC--cc------CC------------CCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAVL--TVHWKRLG--SA------MP------------EDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~--~~------~~------------~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+.+|+++.|.|.+.|....  .+.|.+..  +.      +.            ..+..+..+     ..|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            3467889999999999876433  47787632  10      10            122233211     2388899999


Q ss_pred             CCCeEEEEEEE
Q psy573          180 EDGGEYVCEAE  190 (216)
Q Consensus       180 ~d~g~y~C~~~  190 (216)
                      +|.+.|.|...
T Consensus        89 eDtavYYCAr~   99 (126)
T d1dfbh1          89 EDMALYYCVKG   99 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEec
Confidence            99999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.18  E-value=0.00069  Score=39.60  Aligned_cols=64  Identities=23%  Similarity=0.473  Sum_probs=42.6

Q ss_pred             eeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------C-----------CCCeeeecC-----CeEEEecCCCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------P-----------EDRMSVLPS-----RSLQLSDVRLED  181 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------~-----------~~~~~~~~~-----~~l~i~~~~~~d  181 (216)
                      ..+.+|+++.|.|.+.|..  .-.+.|.+..  +.+      .           ..+..+..+     ..|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            4678899999999998764  3357787642  110      0           112333321     248899999999


Q ss_pred             CeEEEEEEEc
Q psy573          182 GGEYVCEAEN  191 (216)
Q Consensus       182 ~g~y~C~~~n  191 (216)
                      .+.|.|....
T Consensus        90 tA~YyCAr~~   99 (118)
T d1lo4h1          90 TAIYYCARGT   99 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEecccC
Confidence            9999997543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.17  E-value=0.00073  Score=40.24  Aligned_cols=65  Identities=23%  Similarity=0.548  Sum_probs=42.6

Q ss_pred             CceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC-------C-----------CCCeeeec---CC--eEEEecCC
Q psy573          126 KDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM-------P-----------EDRMSVLP---SR--SLQLSDVR  178 (216)
Q Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~-------~-----------~~~~~~~~---~~--~l~i~~~~  178 (216)
                      ....+.+|+++.|.|.+.+...  ..+.|.+..  +.+       .           ..+..+..   .+  .|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            3456788999999999987643  357887632  111       0           11222221   12  38888999


Q ss_pred             CCCCeEEEEEEE
Q psy573          179 LEDGGEYVCEAE  190 (216)
Q Consensus       179 ~~d~g~y~C~~~  190 (216)
                      .+|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999753

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=0.00091  Score=39.81  Aligned_cols=65  Identities=28%  Similarity=0.564  Sum_probs=43.0

Q ss_pred             ceeEeCCCcEEEEEEeCCCC--CcEEEEeeCC--ccC------------C-----------CCCeeeec-----CCeEEE
Q psy573          127 DTTVSAGSIIVFECSVGGDA--VLTVHWKRLG--SAM------------P-----------EDRMSVLP-----SRSLQL  174 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~--~~~------------~-----------~~~~~~~~-----~~~l~i  174 (216)
                      ...+.+|+++.|.|.+.|..  .-.+.|++..  +.+            +           ..+..+..     ...|.|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            34677899999999998764  3357888642  100            0           01222221     124889


Q ss_pred             ecCCCCCCeEEEEEEEc
Q psy573          175 SDVRLEDGGEYVCEAEN  191 (216)
Q Consensus       175 ~~~~~~d~g~y~C~~~n  191 (216)
                      .+++.+|++.|.|....
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999998653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.13  E-value=0.0015  Score=38.69  Aligned_cols=65  Identities=23%  Similarity=0.510  Sum_probs=42.4

Q ss_pred             ceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC--ccC------------------CCCCeeeecC-----CeEEEecCCC
Q psy573          127 DTTVSAGSIIVFECSVGGDAV--LTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRL  179 (216)
Q Consensus       127 ~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~~  179 (216)
                      ...+++|+++.|.|.+.+...  -.+.|.+..  +.+                  -..+..+..+     ..|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            346778999999999987643  347776531  100                  0123333321     2388899999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|.+.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.0012  Score=39.50  Aligned_cols=64  Identities=22%  Similarity=0.400  Sum_probs=42.5

Q ss_pred             eeEeCCCcEEEEEEeCCCC----CcEEEEeeCCc--cC-----------------CCCCeeeec---C--CeEEEecCCC
Q psy573          128 TTVSAGSIIVFECSVGGDA----VLTVHWKRLGS--AM-----------------PEDRMSVLP---S--RSLQLSDVRL  179 (216)
Q Consensus       128 ~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~--~~-----------------~~~~~~~~~---~--~~l~i~~~~~  179 (216)
                      ..+.+|+++.|.|.+.|..    ..-+.|++...  .+                 ...+..+..   .  ..|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            4678899999999987653    22578987421  11                 012333321   1  2389999999


Q ss_pred             CCCeEEEEEEEc
Q psy573          180 EDGGEYVCEAEN  191 (216)
Q Consensus       180 ~d~g~y~C~~~n  191 (216)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997653