Psyllid ID: psy5756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MCTSFAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKNSNFPPTLHAKSPTMSYDGPVHNHGLRAEMSSDDVR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccccccccccccEEEccccccccccccEEEEEEcccccccccccHHHHcccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEEccccccccEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcHHHHHHHcccccccccccccHHHHHccccccccccccEEEEEEccHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHEccEEEccccEEEEEccccccccEEEEEEEccEEcccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEHHEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
MCTSFAFVDSSllqslqtcdlpfglrcpekRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKrrregktdyyARKRLIVqdknkyntpkyrLIVRFSNKDITCQVAYSRIEGDHIICsayshelpkygikvGLTNYAAAYATGLLLARRLLKNLnldrlyvgctevtgeefsvesvdkgpgafrcYLDVGLMKTSTGAKVFGAmkgavdgglniphsvkrfpgydneskdfnAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFServggwgtlseqlgmtkssfkceKLWIVYFCVGIGENLACLHDISCRLYKLRKkiknsnfpptlhaksptmsydgpvhnhglraemssddvr
Flexible Loop (DISEMBL)
MCTSFAFvdssllqslqtcdlpfglRCPEKRVFRSLKsffkplemgfvkvvknkqyfkryqvkfkrrregktdyyarkrlivqdknkyntpkyrlivrfsnkDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEvtgeefsvesvdkgpGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFServggwgtlseqlgmtksSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKnsnfpptlhaksptmsydgpVHNHGlraemssddvr
Low Complexity Region (SEG)
MCTSFAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGltnyaaayatglllarrllknlnldrlyVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKNSNFPPTLHAKSPTMSYDGPVHNHGLRAEMSSDDVR
Disordered region (IsUnstruct)
****FAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQL**********QFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKI*************************************
Disordered Region (DISOPRED)
***SFAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFP********FNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCV********************************************VHNHGL**********
Disordered Region (DISEMBL)
********DSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKNSNFPPTLHAKSPTMSYDGPVHNHGLRA********
Disordered Region (DISPRO)
*CTSFAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKNSNFPPTLHAKSPTMSYDGPVHNHGLRAEMS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTSFAFVDSSLLQSLQTCDLPFGLRCPEKRVFRSLKSFFKPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMTKSSFKCEKLWIVYFCVGIGENLACLHDISCRLYKLRKKIKNSNFPPTLHAKSPTMSYDGPVHNHGLRAEMSSDDVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
O65353	297	60S ribosomal protein L5	N/A	N/A	0.630	0.764	0.823	1e-113
Q5XUC7	300	60S ribosomal protein L5	N/A	N/A	0.630	0.756	0.823	1e-110
Q9W5R8	299	60S ribosomal protein L5	yes	N/A	0.622	0.749	0.816	1e-110
Q56FG6	297	60S ribosomal protein L5	N/A	N/A	0.630	0.764	0.792	1e-108
O76190	299	60S ribosomal protein L5	N/A	N/A	0.661	0.795	0.768	1e-107
Q1HQU2	297	60S ribosomal protein L5	N/A	N/A	0.633	0.767	0.793	1e-106
O44248	325	60S ribosomal protein L5	yes	N/A	0.630	0.698	0.806	1e-106
P22451	297	60S ribosomal protein L5	yes	N/A	0.630	0.764	0.753	1e-103
P15126	296	60S ribosomal protein L5-	N/A	N/A	0.655	0.797	0.729	1e-103
P15125	296	60S ribosomal protein L5-	N/A	N/A	0.655	0.797	0.729	1e-103

>sp|O65353|RL5_HELAN 60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/227 (82%), Positives = 214/227 (94%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDY+ARKRLI QDKNKYNTPKYRL+VRFSN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVAYSRIEGD I+C+AY+HELP+YG+KVGLTNYAAAY TGLLLAR+LL  L LD+LY+
Sbjct: 61  TCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYI 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEVTGEEF+V+ V+ GPGAFRCYLDVGLM+T+TGA+VFGAMKGAVDGGLNI HS KRF
Sbjct: 121 GSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PG+D+ESK+FNA++HR+HIFG HVAEYMRQL+EEDDEA+KRQFS+ +
Sbjct: 181 PGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYI 227

This protein binds 5S RNA.
Helianthus annuus (taxid: 4232)

>sp|Q5XUC7|RL5_TOXCI 60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/227 (82%), Positives = 206/227 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKY+TPKYRLIVRFSN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVA+SRIEGD I+C+AYSHELPKYG+KVGLTNYAAAY TGLL+ARRLLK L LDRLY 
Sbjct: 61  TCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  E  GEE+ VE  D+GP AFRC LDVGLMKTSTGA+VFGAMKGAVDGG NIPHSVKRF
Sbjct: 121 GLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD E+K+++AE HRKHI GLHVAEYMR+L EED++AF RQFS+ +
Sbjct: 181 PGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYI 227

This protein binds 5S RNA.

Toxoptera citricida (taxid: 223852)

>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/224 (81%), Positives = 203/224 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           T Q+AY+RIEGD ++C+AYSHELPKYGI+VGLTNYAAAY TGLL+ARR+L  L LD LY 
Sbjct: 61  TVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCTEVTGEEF+VE VD GPGAFRC+LDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
           PGY  E+K FNA++HR HIFG HVA+YMR L EED+E+FKRQFS
Sbjct: 181 PGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFS 224

This protein binds 5S RNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 202/227 (88%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKR+QVK+KRRREGKTDYYARKRL VQDK+KYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQ+AYSRIEGD I+C+AYSHELPKYGIKVGLTNYAAAY TGLLLARRLLK L LD LY 
Sbjct: 61  TCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYT 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEV G+E++VE  D GPGAFRCYLD GLM+T+TGA++FGAMKGAVDGGLNIPHS KRF
Sbjct: 121 GTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYDNESK FNA++HR+HIF  H+A YM+ L E + E F+RQFS+ +
Sbjct: 181 PGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYI 227

This protein binds 5S RNA.

Lysiphlebus testaceipes (taxid: 77504)

>sp|O76190|RL5_BOMMO 60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/246 (76%), Positives = 218/246 (88%), Gaps = 8/246 (3%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL+VQDKNKYNTPKYRLIVR SNKD+
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVAYSRIEGDHI+C+AYSHELP+YG+KVGLTNYAAAY+TGLLLARRLL+ L LD LY 
Sbjct: 61  TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYT 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G T+VTG+E++VE VD GPGAFRCYLDVGL +T+TG +VFGAMKGAVDGGLN+PHS+KRF
Sbjct: 121 GTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMT 284
           PGYD ESK FNAE+HR HIFGLHVAEYMR L ++D+++FKRQFS+ +        +LG+T
Sbjct: 181 PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI--------KLGVT 232

Query: 285 KSSFKC 290
             + + 
Sbjct: 233 ADAIEA 238

This protein binds 5S RNA.

Bombyx mori (taxid: 7091)

>sp|Q1HQU2|RL5_AEDAE 60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/228 (79%), Positives = 207/228 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRLI QDKNKYNTPKYRLIVR SN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKYRLIVRLSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQ+AY+RIEGD I+C+AYSHELP+YG+KVGLTNYAAAY TGLL+ARR+L+ L LD LY 
Sbjct: 61  TCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYT 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCT+VTGEE+ VE VD GPGAFRCYLDVGL +T+TGA++FGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVG 272
           PGY  E+K FNAE+HR HIFG HVA+YMR L EED++A+KRQFS+ + 
Sbjct: 181 PGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIA 228

This protein binds 5S RNA.

Aedes aegypti (taxid: 7159)

>sp|O44248|RL5_ANOGA 60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/227 (80%), Positives = 207/227 (91%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRLI QDKNKYNTPK+RLIVR SN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQ+AY+RIEGD I+C+AYSHELP+YG+KVGLTNYAAAY TGLL+ARR+L+ L LD LY 
Sbjct: 61  TCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCT+VTGEE+ VE VD+GP AFRCYLDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGY  E+K FNAE+HR HIFGLHVA YMR L EED+EAFKRQFS+ +
Sbjct: 181 PGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYI 227

This protein binds 5S RNA.

Anopheles gambiae (taxid: 7165)

>sp|P22451|RL5_CHICK 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/227 (75%), Positives = 203/227 (89%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+AY+RIEGD I+C+AY+HELPKYG+KVGLTNYAAAY TGLLLARRLL    LD++Y 
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EVTG+E++VESVD  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

Required for rRNA maturation and formation of the 60S ribosomal subunits (By similarity). This protein binds 5S RNA.

Gallus gallus (taxid: 9031)

>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-b PE=2 SV=2

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 207/237 (87%), Gaps = 1/237 (0%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+AY+RIEGD I+C+AY+HELPKYG+KVGLTNYAAAY TGLLLARRLL    LD++Y 
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EVTG+E++VESVD  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL 281
           PGYD+ESK+FN E+HRKHIF  ++AEYMR L EED++A+K+QFS+ +   G  ++QL
Sbjct: 181 PGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKN-GVAADQL 236

This protein binds 5S RNA.

Xenopus laevis (taxid: 8355)

>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-a PE=2 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 207/237 (87%), Gaps = 1/237 (0%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+AY+RIEGD I+C+AY+HELPKYGIKVGLTNYAAAY TGLLLARRLL    LD++Y 
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL 281
           PGYD+ESK+FN E+HRKHIF  +VAEYMR L EED++A+K+QFS+ +   G  ++Q+
Sbjct: 181 PGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKN-GVTADQV 236

This protein binds 5S RNA.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
312306042	299	60S ribosomal protein L5 [Laodelphax str	0.625	0.752	0.848	1e-114
6094086	297	RecName: Full=60S ribosomal protein L5 g	0.630	0.764	0.823	1e-111
270000965	300	hypothetical protein TcasGA2_TC011241 [T	0.630	0.756	0.828	1e-110
357617373	297	ribosomal protein L5 [Danaus plexippus]	0.630	0.764	0.806	1e-110
195385177	992	GJ15046 [Drosophila virilis] gi|19414774	0.630	0.228	0.819	1e-109
195051326	858	GH13292 [Drosophila grimshawi] gi|193900	0.636	0.266	0.813	1e-109
195437688	299	GK24660 [Drosophila willistoni] gi|19416	0.622	0.749	0.821	1e-108
195164533	299	GL21177 [Drosophila persimilis] gi|19847	0.622	0.749	0.821	1e-108
74845700	300	RecName: Full=60S ribosomal protein L5 g	0.630	0.756	0.823	1e-108
217426024	253	ribosomal protein L5 [Drosophila silvest	0.630	0.897	0.819	1e-108

>gi|312306042|gb|ADQ73874.1| 60S ribosomal protein L5 [Laodelphax striatella]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/225 (84%), Positives = 216/225 (96%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQ+AYSRIEGD I+C+AYSHELPKYG+KVGLTNYA+AY TGLL+ARRLLK L LD+LY 
Sbjct: 61  TCQIAYSRIEGDKIVCAAYSHELPKYGVKVGLTNYASAYCTGLLIARRLLKKLGLDQLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEVTGEE++VE++D+GPGAF+C+LDVGLMKTSTGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GTTEVTGEEYNVEALDEGPGAFKCFLDVGLMKTSTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           PG+D ESK+FNA++HRKHIFGLHV+EYM+QL+E DDEA+K+QFS+
Sbjct: 181 PGFDGESKNFNADVHRKHIFGLHVSEYMQQLAENDDEAYKKQFSQ 225

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6094086|sp|O65353.1|RL5_HELAN RecName: Full=60S ribosomal protein L5 gi|3153904|gb|AAC17448.1| RPL5A-related protein [Helianthus annuus]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/227 (82%), Positives = 214/227 (94%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDY+ARKRLI QDKNKYNTPKYRL+VRFSN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVAYSRIEGD I+C+AY+HELP+YG+KVGLTNYAAAY TGLLLAR+LL  L LD+LY+
Sbjct: 61  TCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYI 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEVTGEEF+V+ V+ GPGAFRCYLDVGLM+T+TGA+VFGAMKGAVDGGLNI HS KRF
Sbjct: 121 GSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PG+D+ESK+FNA++HR+HIFG HVAEYMRQL+EEDDEA+KRQFS+ +
Sbjct: 181 PGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYI 227

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270000965|gb|EEZ97412.1| hypothetical protein TcasGA2_TC011241 [Tribolium castaneum]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/227 (82%), Positives = 206/227 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKR+QVKFKRRR+GKTDYYARKRLIVQDKNKYNTPKYRLIVR SN+DI
Sbjct: 1   MGFVKVVKNKQYFKRFQVKFKRRRQGKTDYYARKRLIVQDKNKYNTPKYRLIVRLSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVAYSRIEGD I+C+AYSHELPKYGIK GLTNYAAAY TGLLLARRLLK L LD+LY 
Sbjct: 61  TCQVAYSRIEGDKIVCAAYSHELPKYGIKAGLTNYAAAYCTGLLLARRLLKQLGLDKLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEVTG+E++VE V+ GPGAFRCYLDVGL +T+TGA+VF AMKGAVDGGLNIPHS KRF
Sbjct: 121 GTTEVTGDEYNVEGVENGPGAFRCYLDVGLQRTTTGARVFAAMKGAVDGGLNIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD ESK FNA++HR HIFG HVA+YMR L EED EAFKRQFS+ +
Sbjct: 181 PGYDAESKSFNADVHRSHIFGQHVADYMRSLEEEDPEAFKRQFSQYI 227

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617373|gb|EHJ70750.1| ribosomal protein L5 [Danaus plexippus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/227 (80%), Positives = 209/227 (92%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M FVKVVKNKQYFKRYQVKFKRRR+GKTDYYARKRLIVQDKNKYNTPKYR+IVR SNKD+
Sbjct: 1   MAFVKVVKNKQYFKRYQVKFKRRRQGKTDYYARKRLIVQDKNKYNTPKYRIIVRLSNKDV 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQ+AYSRIEGDHI+C+AYSHELP+YGIKVGLTNYAAAY TGLL+ARRLL+ L LD LY 
Sbjct: 61  TCQIAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGLLVARRLLQRLGLDSLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G TEVTG+EF+VE VD GPGAFRCYLDVGL +T+TGA+VFGAMKGAVDGGLN+PHS+KRF
Sbjct: 121 GATEVTGDEFNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PG+D E+K FNAE+HR HIFGLHVAEYM+ L +ED+++FKRQF + +
Sbjct: 181 PGFDAEAKKFNAEVHRAHIFGLHVAEYMKNLEQEDEDSFKRQFGKYI 227

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385177|ref|XP_002051284.1| GJ15046 [Drosophila virilis] gi|194147741|gb|EDW63439.1| GJ15046 [Drosophila virilis]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 204/227 (89%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct: 694 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 753

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           T Q+AY+RIEGD ++CSAYSHELP YGI+VGLTNYAAAY TGLL+ARRLL  L LD LY 
Sbjct: 754 TAQIAYARIEGDRVVCSAYSHELPNYGIQVGLTNYAAAYCTGLLVARRLLNKLGLDSLYA 813

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCTEVTGEEF+VE VD+GPGAFRCYLDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 814 GCTEVTGEEFNVEPVDEGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 873

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGY  E+K FNA++HR HIFG HVA+YMR L EED+EAFKRQFS  +
Sbjct: 874 PGYSAETKSFNADVHRAHIFGQHVADYMRTLEEEDEEAFKRQFSRYI 920

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195051326|ref|XP_001993074.1| GH13292 [Drosophila grimshawi] gi|193900133|gb|EDV98999.1| GH13292 [Drosophila grimshawi]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/230 (81%), Positives = 205/230 (89%), Gaps = 1/230 (0%)

Query: 42  PLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSN 101
           PL +GFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SN
Sbjct: 558 PL-VGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSN 616

Query: 102 KDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDR 161
           KDIT Q+AY+RIEGD ++CSAYSHELP YGI+VGLTNYAAAY TGLL+ARRLL  L LD 
Sbjct: 617 KDITAQIAYARIEGDRVVCSAYSHELPNYGIQVGLTNYAAAYCTGLLVARRLLNKLGLDS 676

Query: 162 LYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSV 221
           LY GCTEVTGEEF+VE VD GPGAFRCYLDVGL +T+TGA+VFGAMKGAVDGGLNIPHSV
Sbjct: 677 LYAGCTEVTGEEFNVEPVDDGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSV 736

Query: 222 KRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           KRFPGY  E+K FNA++HR HIFG HVA+YMR L EED+EAFKRQFS  +
Sbjct: 737 KRFPGYSAETKSFNADVHRAHIFGQHVADYMRTLEEEDEEAFKRQFSRYI 786

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437688|ref|XP_002066772.1| GK24660 [Drosophila willistoni] gi|194162857|gb|EDW77758.1| GK24660 [Drosophila willistoni]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/224 (82%), Positives = 203/224 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           T Q+AY+RIEGD ++C+AYSHELPKYG++VGLTNYAAAY TGLL+ARR+L  L LD LY 
Sbjct: 61  TVQIAYARIEGDRVVCAAYSHELPKYGVQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCTEVTGEEF+VE VD GPGAFRCYLDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTEVTGEEFNVEPVDDGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
           PGY  ESK FNA++HR HIFG HVA+YMR L EED+E+FKRQFS
Sbjct: 181 PGYSAESKSFNADVHRAHIFGQHVADYMRTLEEEDEESFKRQFS 224

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164533|ref|XP_002023101.1| GL21177 [Drosophila persimilis] gi|198473442|ref|XP_002133263.1| GA28757 [Drosophila pseudoobscura pseudoobscura] gi|194105186|gb|EDW27229.1| GL21177 [Drosophila persimilis] gi|198139459|gb|EDY70665.1| GA28757 [Drosophila pseudoobscura pseudoobscura]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/224 (82%), Positives = 203/224 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           T Q+AY+RIEGD ++C+AYSHELPKYGIKVGLTNYAAAY TGLL+ARR+L  L LD LY 
Sbjct: 61  TVQIAYARIEGDRVVCAAYSHELPKYGIKVGLTNYAAAYCTGLLVARRVLNKLGLDSLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCTEVTGEEF+VE VD GPGAFRC+LDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
           PGY  E+K FNA++HR HIFG HVA+YMR L EED+E+FKRQFS
Sbjct: 181 PGYSAETKSFNADVHRAHIFGQHVADYMRTLEEEDEESFKRQFS 224

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74845700|sp|Q5XUC7.1|RL5_TOXCI RecName: Full=60S ribosomal protein L5 gi|52630913|gb|AAU84920.1| putative ribosomal protein L5 [Toxoptera citricida]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/227 (82%), Positives = 206/227 (90%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKY+TPKYRLIVRFSN+DI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           TCQVA+SRIEGD I+C+AYSHELPKYG+KVGLTNYAAAY TGLL+ARRLLK L LDRLY 
Sbjct: 61  TCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  E  GEE+ VE  D+GP AFRC LDVGLMKTSTGA+VFGAMKGAVDGG NIPHSVKRF
Sbjct: 121 GLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD E+K+++AE HRKHI GLHVAEYMR+L EED++AF RQFS+ +
Sbjct: 181 PGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYI 227

Source: Toxoptera citricida

Species: Toxoptera citricida

Genus: Toxoptera

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|217426024|gb|ACK44339.1| ribosomal protein L5 [Drosophila silvestris]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 203/227 (89%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct: 1   MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
           T Q+AY+RIEGD ++CSAYSHELP YGI+VGLTNYAAAY TGLL+ARRLL  L LD LY 
Sbjct: 61  TAQIAYARIEGDRVVCSAYSHELPNYGIQVGLTNYAAAYCTGLLVARRLLNKLGLDSLYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           GCTEVTGEEF+VE VD GPGAFRCYLDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct: 121 GCTEVTGEEFNVEPVDDGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGY  E+K FNA++HR HIFG HVA+YMR L EED+EAFKRQFS  +
Sbjct: 181 PGYSAETKSFNADVHRAHIFGQHVADYMRTLEEEDEEAFKRQFSRYI 227

Source: Drosophila silvestris

Species: Drosophila silvestris

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
FB|FBgn0064225	299	RpL5 "Ribosomal protein L5" [D	0.630	0.759	0.713	2.3e-87
ZFIN|ZDB-GENE-040625-93	328	rpl5b "ribosomal protein L5b"	0.686	0.753	0.627	1e-82
UNIPROTKB|P22451	297	RPL5 "60S ribosomal protein L5	0.630	0.764	0.660	5.8e-82
UNIPROTKB|P46777	297	RPL5 "60S ribosomal protein L5	0.630	0.764	0.656	7.4e-82
UNIPROTKB|F1S530	297	RPL5 "60S ribosomal protein L5	0.630	0.764	0.656	9.4e-82
UNIPROTKB|F2Z4K4	296	RPL5 "60S ribosomal protein L5	0.627	0.763	0.659	2e-81
UNIPROTKB|F1P7B0	297	RPL5 "Uncharacterized protein"	0.627	0.760	0.654	2.5e-81
UNIPROTKB|Q58DW5	297	RPL5 "60S ribosomal protein L5	0.630	0.764	0.651	3.2e-81
RGD|619825	297	Rpl5 "ribosomal protein L5" [R	0.630	0.764	0.647	5.2e-81
ZFIN|ZDB-GENE-030131-5161	297	rpl5a "ribosomal protein L5a"	0.622	0.754	0.660	8.5e-81

FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 162/227 (71%), Positives = 181/227 (79%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL  QDKNKYNTPKYRLIVR SNKDI
Sbjct:     1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
             T Q+AY+RIEGD ++C+AYSHELPKYGI+VG                             
Sbjct:    61 TVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYA 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             GCTEVTGEEF+VE VD GPGAFRC+LDVGL +T+TGA+VFGAMKGAVDGGLNIPHSVKRF
Sbjct:   121 GCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGY  E+K FNA++HR HIFG HVA+YMR L EED+E+FKRQFS  +
Sbjct:   181 PGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYI 227

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=IEA;ISS

GO:0008097 "5S rRNA binding" evidence=IEA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IDA

ZFIN|ZDB-GENE-040625-93 rpl5b "ribosomal protein L5b" [Danio rerio (taxid:7955)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 155/247 (62%), Positives = 184/247 (74%)

Query:    41 KPLEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFS 100
             K  +MGFVKVVKNK YFKRYQVKF+RRREGKTDY+ARKRL++QDKNKYNTPKYR+IVRFS
Sbjct:    29 KVYKMGFVKVVKNKSYFKRYQVKFRRRREGKTDYFARKRLVIQDKNKYNTPKYRMIVRFS 88

Query:   101 NKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXX 160
             N+DI CQ+AY++IEGD I+C+AYSHELPKYGI VG                         
Sbjct:    89 NRDIVCQIAYAKIEGDMIVCAAYSHELPKYGISVGLTNYAAAYCTGLLLARRLLNKFGLD 148

Query:   161 XXXVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHS 220
                 G  E+TG+EF+VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS
Sbjct:   149 KVYDGQVEITGDEFNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHS 208

Query:   221 VKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQ 280
              KRFPGYD ESK+FNAE+HRKHI GL++AEYMR L EED+E +K+QFS  +    T    
Sbjct:   209 TKRFPGYDVESKEFNAEVHRKHILGLNIAEYMRLLMEEDEECYKKQFSRFIKNGVTADSM 268

Query:   281 LGMTKSS 287
               M K +
Sbjct:   269 EEMYKKA 275

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

UNIPROTKB|P22451 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 150/227 (66%), Positives = 180/227 (79%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct:     1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             
Sbjct:    61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EVTG+E++VESVD  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 149/227 (65%), Positives = 180/227 (79%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct:     1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             
Sbjct:    61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IMP

GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 149/227 (65%), Positives = 180/227 (79%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct:     1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             
Sbjct:    61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 PGYDSESKEFNAEVHRKHILGQNVADYMRYLIEEDEDAYKKQFSQYI 227

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4K4 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 149/226 (65%), Positives = 179/226 (79%)

Query:    46 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDIT 105
             GFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI 
Sbjct:     1 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDII 60

Query:   106 CQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVG 165
             CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             G
Sbjct:    61 CQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEG 120

Query:   166 CTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFP 225
               EVTG+E++VESVD  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRFP
Sbjct:   121 QVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFP 180

Query:   226 GYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             GYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 GYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 226

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|F1P7B0 RPL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 148/226 (65%), Positives = 179/226 (79%)

Query:    46 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDIT 105
             GFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI 
Sbjct:     2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDII 61

Query:   106 CQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVG 165
             CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             G
Sbjct:    62 CQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEG 121

Query:   166 CTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFP 225
               EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRFP
Sbjct:   122 QVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFP 181

Query:   226 GYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             GYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   182 GYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q58DW5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 148/227 (65%), Positives = 180/227 (79%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct:     1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             
Sbjct:    61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGYD+ESK+F+AE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 PGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYI 227

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

RGD|619825 Rpl5 "ribosomal protein L5" [Rattus norvegicus (taxid:10116)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 147/227 (64%), Positives = 179/227 (78%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YFKRYQV+F+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct:     1 MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY+RIEGD I+C+AY+HELPKYG+KVG                             
Sbjct:    61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EV G+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
             PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct:   181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=TAS

GO:0010922 "positive regulation of phosphatase activity" evidence=IDA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0071241 "cellular response to inorganic substance" evidence=IEP

ZFIN|ZDB-GENE-030131-5161 rpl5a "ribosomal protein L5a" [Danio rerio (taxid:7955)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 148/224 (66%), Positives = 176/224 (78%)

Query:    45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
             MGFVKVVKNK YF+RYQVKF+RRREGKTDY+ARKRL++QDKNKYNTPKYR+I+RFSN+DI
Sbjct:     1 MGFVKVVKNKSYFRRYQVKFRRRREGKTDYFARKRLVIQDKNKYNTPKYRMIIRFSNRDI 60

Query:   105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
              CQ+AY++IEGD I+C+AYSHELPKYGI  G                             
Sbjct:    61 VCQIAYAKIEGDAIVCAAYSHELPKYGIACGLTNYAAAYCTGLLCARRLLNKFGLDKVYE 120

Query:   165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
             G  EVTG+EF+VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct:   121 GQVEVTGDEFNVESIDGQPGAFSCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query:   225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
             PGYD+ESK+FNAE+HRKHI GL+V+EYM  L EED+E +K+QFS
Sbjct:   181 PGYDSESKEFNAEVHRKHILGLNVSEYMSLLMEEDEELYKKQFS 224

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65353	RL5_HELAN	No assigned EC number	0.8237	0.6305	0.7643	N/A	N/A
P15126	RL5B_XENLA	No assigned EC number	0.7299	0.6555	0.7972	N/A	N/A
P15125	RL5A_XENLA	No assigned EC number	0.7299	0.6555	0.7972	N/A	N/A
Q0JGY1	RL51_ORYSJ	No assigned EC number	0.6205	0.6194	0.7335	yes	N/A
Q58DW5	RL5_BOVIN	No assigned EC number	0.7400	0.6305	0.7643	yes	N/A
Q26481	RL5_STYCL	No assigned EC number	0.7533	0.6305	0.7694	N/A	N/A
O74306	RL5B_SCHPO	No assigned EC number	0.5780	0.6555	0.8027	yes	N/A
P49405	RL5_CAEEL	No assigned EC number	0.6681	0.6194	0.7610	yes	N/A
Q8LBI1	RL51_ARATH	No assigned EC number	0.6222	0.6166	0.7375	yes	N/A
P52822	RL5A_SCHPO	No assigned EC number	0.5780	0.6555	0.8027	yes	N/A
Q54XX3	RL5_DICDI	No assigned EC number	0.6123	0.6305	0.7773	yes	N/A
Q4R5M0	RL5_MACFA	No assigned EC number	0.7400	0.6305	0.7643	N/A	N/A
Q4N655	RL5_THEPA	No assigned EC number	0.5991	0.6222	0.7320	yes	N/A
O44248	RL5_ANOGA	No assigned EC number	0.8061	0.6305	0.6984	yes	N/A
Q9W5R8	RL5_DROME	No assigned EC number	0.8169	0.6222	0.7491	yes	N/A
P47962	RL5_MOUSE	No assigned EC number	0.7356	0.6305	0.7643	no	N/A
P49227	RL52_ARATH	No assigned EC number	0.6222	0.6166	0.7375	yes	N/A
P46777	RL5_HUMAN	No assigned EC number	0.7444	0.6305	0.7643	yes	N/A
Q8L4L4	RL52_ORYSJ	No assigned EC number	0.6035	0.6194	0.7335	yes	N/A
P22451	RL5_CHICK	No assigned EC number	0.7533	0.6305	0.7643	yes	N/A
Q5XUC7	RL5_TOXCI	No assigned EC number	0.8237	0.6305	0.7566	N/A	N/A
Q1HQU2	RL5_AEDAE	No assigned EC number	0.7938	0.6333	0.7676	N/A	N/A
Q56FG6	RL5_LYSTE	No assigned EC number	0.7929	0.6305	0.7643	N/A	N/A
O76190	RL5_BOMMO	No assigned EC number	0.7682	0.6611	0.7959	N/A	N/A
P26321	RL5_YEAST	No assigned EC number	0.5784	0.6194	0.7508	yes	N/A
Q4UDE7	RL5_THEAN	No assigned EC number	0.5947	0.6222	0.7320	yes	N/A
P09895	RL5_RAT	No assigned EC number	0.7356	0.6305	0.7643	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	360
PTZ00069	300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	1e-140
PRK08569	193	PRK08569, rpl18p, 50S ribosomal protein L18P; Revi	4e-47
pfam00861	119	pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami	2e-43
cd00432	103	cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18	5e-31
COG0256	125	COG0256, RplR, Ribosomal protein L18 [Translation,	2e-30
pfam14204	93	pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin	6e-16

>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional

 Score =  400 bits (1030), Expect = e-140
 Identities = 149/225 (66%), Positives = 181/225 (80%), Gaps = 1/225 (0%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M FVKVVKNK YFKR+QVK++RRREGKTDYYAR+RLI+QDKNKYN+PKYRL+VR +NKDI
Sbjct: 1   MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+ Y+ I GD ++ +AYSHELP++GI VGLTNYAAAYATGLLLARRLLK L LD+ + 
Sbjct: 61  ICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFE 120

Query: 165 GCTEVTGEEFSV-ESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKR 223
           G  E  GE + V E  D+    F+  LDVGL +T+TG +VFGA+KGAVDGGL+IPHS  R
Sbjct: 121 GVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRVFGALKGAVDGGLHIPHSPNR 180

Query: 224 FPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
           FPGY  E   ++AE+HR  IFG HVAEYM+QL EED + +K+QFS
Sbjct: 181 FPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFS 225

Length = 300

>gnl|CDD|236294 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed

 Score =  158 bits (401), Expect = 4e-47
 Identities = 79/210 (37%), Positives = 106/210 (50%), Gaps = 50/210 (23%)

Query: 59  RYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHI 118
           RY+V F+RRREGKTDY  R +L++  K        RL+VR +NK +  Q+     +GD  
Sbjct: 6   RYKVPFRRRREGKTDYRKRLKLLLSGKP-------RLVVRKTNKHVIAQIVKYDPKGDRT 58

Query: 119 ICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVES 178
           + SA+S EL KYG K    N  AAY TGLL  ++ LK               G E +V  
Sbjct: 59  LASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKA--------------GVEEAV-- 102

Query: 179 VDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEI 238
                      LD+GL + + G++VF A+KGA+D GL IPH  +  P  D          
Sbjct: 103 -----------LDIGLHRPTKGSRVFAALKGAIDAGLEIPHGEEVLPDED---------- 141

Query: 239 HRKHIFGLHVAEYMRQLSEEDDEAFKRQFS 268
               I G H+AEY   L EE+   +K+QFS
Sbjct: 142 ---RIRGEHIAEYAESLKEEN---YKKQFS 165

Length = 193

>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family

 Score =  145 bits (369), Expect = 2e-43
 Identities = 51/148 (34%), Positives = 62/148 (41%), Gaps = 29/148 (19%)

Query: 70  GKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPK 129
           GK     RKRL V+ K K    + RL+VR SNK I  Q+      G  +  S  S EL K
Sbjct: 1   GKRRRRRRKRLRVRRKLKGTAERPRLVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKK 60

Query: 130 YGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCY 189
           YG+K G  N AAAY  GLLLA+R LK                         KG       
Sbjct: 61  YGLKGGGNNTAAAYLVGLLLAKRALK-------------------------KG----IAV 91

Query: 190 LDVGLMKTSTGAKVFGAMKGAVDGGLNI 217
           +       +   +VF   KGA + GLN 
Sbjct: 92  VVFDRGGYTYHGRVFALAKGAREAGLNF 119

This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding. Length = 119

>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

 Score =  113 bits (284), Expect = 5e-31
 Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 38/141 (26%)

Query: 75  YARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKV 134
             RKRL  Q        + RL+VR SNK I  Q+      GD  + SA + EL   G+  
Sbjct: 1   RRRKRLGTQ-------ERPRLVVRKSNKHIYAQIIDD--SGDKTLVSASTLELAIKGVLG 51

Query: 135 GLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGL 194
              N  AAY  G LLA+R L+                            G  +   D G 
Sbjct: 52  SGNNVEAAYLVGRLLAKRALEK---------------------------GIKKVVFDRGG 84

Query: 195 MKTSTGAKVFGAMKGAVDGGL 215
            +     +V    KGA +GGL
Sbjct: 85  YR--YHGRVKALAKGAREGGL 103

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Length = 103

>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

 Score =  112 bits (282), Expect = 2e-30
 Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 35/159 (22%)

Query: 59  RYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHI 118
           RY+VKF+RRR GK  Y  RK+L         + + RL+VR SN+ I  Q+      G   
Sbjct: 2   RYKVKFRRRRRGKRAYRIRKKL------LGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLA 55

Query: 119 ICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVES 178
             S  S EL KYG K G  N  AAY  G L+A R L          G  EV         
Sbjct: 56  SASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERALAK--------GIEEVV-------- 99

Query: 179 VDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI 217
                                  +V     GA + GL  
Sbjct: 100 -------------FDRGGYKYHGRVAALADGAREAGLEF 125

Length = 125

>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region

 Score = 72.2 bits (178), Expect = 6e-16
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 237 EIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           E+HRK+IFG HVAEYM  L EED+E +KRQFS 
Sbjct: 1   EVHRKYIFGGHVAEYMETLKEEDEERYKRQFSR 33

This domain is the C-terminal end of ribosomal L18/L5 proteins. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
PTZ00069	300	60S ribosomal protein L5; Provisional	100.0
KOG0875|consensus	264		100.0
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	100.0
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	100.0
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	99.96
CHL00139	109	rpl18 ribosomal protein L18; Validated	99.94
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	99.94
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	99.93
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	99.92
PTZ00032	211	60S ribosomal protein L18; Provisional	99.87
PF14204	94	Ribosomal_L18_c: Ribosomal L18 C-terminal region;	99.71
PTZ00090	233	40S ribosomal protein S11; Provisional	94.28
KOG3333|consensus	188		94.13
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	90.24
CHL00041	116	rps11 ribosomal protein S11	86.91
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	86.89
PTZ00129	149	40S ribosomal protein S14; Provisional	83.71
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	83.64
PRK05309	128	30S ribosomal protein S11; Validated	80.92

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=100.00  E-value=2.2e-105  Score=761.80  Aligned_cols=243  Identities=63%  Similarity=1.064  Sum_probs=238.5

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS  124 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS  124 (360)
                      |+||||+||+|||+||||||||||||||||++|++||.||||||||||||||||+||++|||||+.+.++||+|||||+|
T Consensus         1 M~fvKv~KnkaY~~ryqvkfRRRREGKTdY~~R~rLi~q~knKynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S   80 (300)
T PTZ00069          1 MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYS   80 (300)
T ss_pred             CCceeeeecccccccccchhhhhhcccccHHHHHHHHHccccccCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceee-cccCCCCCceEEEEeecccccccCcee
Q psy5756         125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSV-ESVDKGPGAFRCYLDVGLMKTSTGAKV  203 (360)
Q Consensus       125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~v-E~~dg~~~~f~avLDiGL~RtT~G~RV  203 (360)
                      +||++|||+++++|++|||+||+|+|+|+|++||||++|+|++|++|++|+| |+.|++++||+|||||||+|+|+|+||
T Consensus        81 ~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~~y~v~e~~~~~~rpf~a~LDiGL~rtt~G~RV  160 (300)
T PTZ00069         81 HELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRV  160 (300)
T ss_pred             hhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccccccCCCCceEEEeeccccCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999 888999999999999999999999999


Q ss_pred             EEeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchh-hc
Q psy5756         204 FGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQ-LG  282 (360)
Q Consensus       204 FAalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~-~~  282 (360)
                      |||||||+||||+||||+++|||||.|+++||||+||+||+|+|||+||+.|+|||||+|++|||+||++ |+.|++ ++
T Consensus       161 FaalKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lkeedee~yk~qFS~yik~-gl~~d~le~  239 (300)
T PTZ00069        161 FGALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKA-GVGPDSLED  239 (300)
T ss_pred             eeehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhhhhChHHHHHHHHHHHHc-CCChhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 777777 48


Q ss_pred             chhhhc
Q psy5756         283 MTKSSF  288 (360)
Q Consensus       283 m~~~~~  288 (360)
                      ||+++.
T Consensus       240 ~y~~ah  245 (300)
T PTZ00069        240 MYKKAH  245 (300)
T ss_pred             HHHHHH
Confidence            998864

>KOG0875|consensus

Probab=100.00  E-value=6.5e-80  Score=576.61  Aligned_cols=216  Identities=69%  Similarity=1.169  Sum_probs=210.5

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS  124 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS  124 (360)
                      |+|||++|+++||+|||||||||||||||||+|++|+.||+||||+|++||+|+++|+.|+|||+++.++||.++++|+|
T Consensus         1 m~fvk~~k~~~y~kryqvk~rrrreGkTdy~arkrl~~qdknk~nt~kyR~ivr~~n~~iicqi~~~~i~gd~v~~~a~s   80 (264)
T KOG0875|consen    1 MGFVKVVKSKAYFKRYQVKFRRRREGKTDYYARKRLVVQDKNKYNTPKYRMIVRVINKDIICQIAYATIEGDVIVRAAYA   80 (264)
T ss_pred             CcchheeccccccccccceEEEecCCCccHHHHHHHHhhcccccCCCceEEEEEEechhhHHHHHhheecceEEEEeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756         125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF  204 (360)
Q Consensus       125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF  204 (360)
                      +||++||++.|++|++|||+||+|||+|+|++||||++|+||+|++|++|++|++||+|++|+|+||+||+|||||+|||
T Consensus        81 ~elpkyg~~~GLtNyaAay~TglLLarR~l~~~gmD~~yeg~~e~~gde~~~e~idgq~~aFt~~Ld~GLaRtttg~kvF  160 (264)
T KOG0875|consen   81 HELPKYGVKVGLTNYAAAYCTGLLLACRLLKRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF  160 (264)
T ss_pred             ccccccccccccchhHHHHhhHHHHHHHHHHHhCcccccccceeecCcccccccccCCCCCeEEEecccccccCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhh-cc
Q psy5756         205 GAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL-GM  283 (360)
Q Consensus       205 AalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~-~m  283 (360)
                      ||||||+||||.||||+++|||                            |.|+|||+|++|||+||+. |+.++++ +|
T Consensus       161 GAlkga~dGGL~IPHs~krFpG----------------------------l~e~d~e~y~~~fs~~i~~-g~~ad~i~~~  211 (264)
T KOG0875|consen  161 GALKGAVDGGLSIPHSTKRFPG----------------------------LTEESEEKYKKEFSGYIAK-GVEADSIEGM  211 (264)
T ss_pred             eeeehhcccceecCCccccCCC----------------------------ccccchhhhhHHHhhhhhc-cccHHHHHHH
Confidence            9999999999999999999999                            8899999999999999999 6665555 99


Q ss_pred             hhhhcc
Q psy5756         284 TKSSFK  289 (360)
Q Consensus       284 ~~~~~~  289 (360)
                      |++++-
T Consensus       212 y~~aha  217 (264)
T KOG0875|consen  212 YKKAHA  217 (264)
T ss_pred             HHHHHH
Confidence            999863

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=100.00  E-value=1.1e-70  Score=499.90  Aligned_cols=183  Identities=43%  Similarity=0.657  Sum_probs=174.1

Q ss_pred             CCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc
Q psy5756          55 QYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKV  134 (360)
Q Consensus        55 aYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~  134 (360)
                      |-.+||||||||||||||||++|++|+.+++       ||||||+||+|||||||+++++||+|||||||+||+++||++
T Consensus         2 a~g~ry~v~~rRrRegkTdY~~R~rl~~~~k-------pRLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~   74 (193)
T PRK08569          2 ATGPRYKVPFRRRREGKTDYRKRLKLLLSGK-------PRLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKG   74 (193)
T ss_pred             CCCCccccceeccccccccHHHHHHHHhcCC-------CEEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccC
Confidence            4579999999999999999999999999997       999999999999999998778899999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccc
Q psy5756         135 GLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGG  214 (360)
Q Consensus       135 g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgG  214 (360)
                      +++|++|||+||+|||+||+++        |                   +.+||||+|++++++||||||+||||+|+|
T Consensus        75 ~~~N~~AAy~vG~llA~ral~k--------G-------------------i~~vvfDrGg~~yh~gGRV~A~akgArd~G  127 (193)
T PRK08569         75 DTGNTPAAYLTGLLAGKKALKA--------G-------------------VEEAVLDIGLHRPTKGSRVFAALKGAIDAG  127 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHC--------C-------------------CCEEEEecCCccccCCccHHHHHHHHHHcC
Confidence            9999999999999999999998        5                   778999999999999999999999999999


Q ss_pred             eecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhh-cchhhhc
Q psy5756         215 LNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL-GMTKSSF  288 (360)
Q Consensus       215 L~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~-~m~~~~~  288 (360)
                      |+||||+++|||+             +||+|+|||+||+.|+|||   |++|||+||++ |++|+++ +||+++.
T Consensus       128 L~fPh~~~~~p~~-------------~ri~G~Hia~y~~~l~~e~---y~~~Fs~y~~~-g~~~~~l~~~~~~~~  185 (193)
T PRK08569        128 LEIPHGEEVLPDE-------------DRIRGEHIAEYAESLKEEN---YKKQFSKYLER-GLDPEDLPEHFEEVK  185 (193)
T ss_pred             CcCCCCCCcCCCc-------------cccccchHHHHHHHHhhhH---HHHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence            9999999999997             7999999999999999988   99999999999 8888886 8998763

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-37  Score=267.98  Aligned_cols=125  Identities=40%  Similarity=0.531  Sum_probs=110.8

Q ss_pred             ccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCC
Q psy5756          58 KRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLT  137 (360)
Q Consensus        58 kRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~t  137 (360)
                      ++|++++||+|+|||+|+.|.+|+      +++++||||||+||+|||||||++...+|.+++|+.+.||.++||+++++
T Consensus         1 ~~~~~~~rr~~~~kr~~r~R~kl~------g~~~rpRL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~   74 (125)
T COG0256           1 PRYKVKFRRRRRGKRAYRIRKKLL------GTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGG   74 (125)
T ss_pred             CccchhhHHHHHHhHHHHHHHhhc------cCCCCcEEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCC
Confidence            589999999999999999999999      45789999999999999999999975444444444445555799999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         138 NYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       138 N~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                      |++|||+||+|+|+||+++        |                   +.++|||.|.+.+  |+||||+++||+|+||++
T Consensus        75 N~~aA~~vG~lia~ra~~k--------g-------------------i~~vVfdr~g~~y--hgRV~Ala~~AreaGL~f  125 (125)
T COG0256          75 NTEAAYLVGKLIAERALAK--------G-------------------IEEVVFDRGGYKY--HGRVAALADGAREAGLEF  125 (125)
T ss_pred             CHHHHHHHHHHHHHHHHHc--------C-------------------CcEEEEcCCCCCc--chHHHHHHHHHHHcCcCC
Confidence            9999999999999999999        5                   7789999999998  999999999999999985

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.96  E-value=4.6e-30  Score=216.70  Aligned_cols=119  Identities=35%  Similarity=0.415  Sum_probs=95.5

Q ss_pred             CCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHH
Q psy5756          70 GKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLL  149 (360)
Q Consensus        70 GKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLl  149 (360)
                      ||++++.|+++..+++.+.++++|||+|++||+|||||||++...++.+.||+.+.+|+++||+.+++|++|||+||++|
T Consensus         1 ~k~~~~~~r~~~~r~~~~~~~~~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~ll   80 (119)
T PF00861_consen    1 KKKRRRRRRKLRIRRKIKGTAERPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELL   80 (119)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHH
Confidence            34455555555555555566677999999999999999999865555555555555666789999999999999999999


Q ss_pred             HHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         150 ARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       150 AkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                      |+||+++        |                   +..+++|.|..++  |+||+|+++||+|+||+|
T Consensus        81 a~ra~~~--------g-------------------i~~v~fdr~~~~y--~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen   81 AKRALEK--------G-------------------IAKVVFDRGGYKY--HGRVKALADGAREGGLEF  119 (119)
T ss_dssp             HHHHHHT--------T-------------------SSEEEECTSTSSS--SSHHHHHHHHHHHTTCB-
T ss_pred             HHHHHHc--------C-------------------CcEEEEcCCCCcc--cHHHHHHHHHHHHcCCCC
Confidence            9999998        4                   6778899888887  999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=99.94  E-value=7.4e-28  Score=202.43  Aligned_cols=96  Identities=22%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      ..+|||+|++||+|||||||++ . .++|||||||.|++.++|..+++|++|||+||++||+||+++        |    
T Consensus        13 ~~rpRL~V~rSnkhiyaQvidd-~-~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~--------g----   78 (109)
T CHL00139         13 AERPRLSVFRSNKHIYAQIIDD-T-NGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKK--------G----   78 (109)
T ss_pred             CCCCEEEEEEeCCeEEEEEEEC-C-CCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHC--------C----
Confidence            4579999999999999999995 3 579999999999999999889999999999999999999998        4    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                                     +.+++||+|++++  ||||+|+++||+|+||+
T Consensus        79 ---------------i~~vvfDrgg~~y--hGrV~a~a~~are~GL~  108 (109)
T CHL00139         79 ---------------ITKVVFDRGGKLY--HGRIKALAEAAREAGLQ  108 (109)
T ss_pred             ---------------CCEEEEcCCCCcc--chHHHHHHHHHHHhCCC
Confidence                           8889999999998  99999999999999996

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=99.94  E-value=9.1e-27  Score=197.81  Aligned_cols=95  Identities=29%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcc-ccccccCCCcHHHHHHHHHHHHHHHHhhcCcccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELP-KYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTE  168 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~-kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~e  168 (360)
                      +.+|||+|++||+|||||||++  ++|+|||||||.|++ +++|+  ++|++|||+||++||+|++++        |   
T Consensus        22 ~~rpRL~V~~SnkhiyAQvidd--~~~~tl~saST~e~~~k~~~~--~~n~~aa~~vG~~la~ra~~~--------g---   86 (117)
T PRK05593         22 AERPRLSVFRSNRHIYAQVIDD--VKGKTLASASTLEKDVRAGLK--GGNKEAAKKVGKLIAERAKAK--------G---   86 (117)
T ss_pred             CCCCEEEEEEeCCeEEEEEEEC--CCCEEEEEEecCcHhHhcccc--CCCHHHHHHHHHHHHHHHHHC--------C---
Confidence            5689999999999999999986  599999999999998 57886  799999999999999999998        4   


Q ss_pred             ccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         169 VTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       169 v~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                                      +.+++||+|..++  |+||+|+++||+|+||+.
T Consensus        87 ----------------i~~vvfDrg~~~y--hGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         87 ----------------IKQVVFDRGGYKY--HGRVKALADAAREAGLKF  117 (117)
T ss_pred             ----------------CCEEEEcCCCCcc--cHHHHHHHHHHHHhCCCC
Confidence                            8889999999999  999999999999999973

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=99.93  E-value=1e-26  Score=190.26  Aligned_cols=95  Identities=38%  Similarity=0.473  Sum_probs=90.0

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      .++|||+|++||+|||||||++.  +|+||++|||+|++.+++..+++|++|||+||.+||+|++++        |    
T Consensus         9 ~~~~RL~v~~Sn~~i~aqvi~~~--~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~--------g----   74 (103)
T cd00432           9 QERPRLVVRKSNKHIYAQIIDDS--GDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEK--------G----   74 (103)
T ss_pred             CCCCEEEEEEeCCEEEEEEEEeC--cCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHC--------C----
Confidence            35799999999999999999984  999999999999998888889999999999999999999998        4    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccce
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGL  215 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL  215 (360)
                                     +++++||+|+.++  |+||+|+++|++|+||
T Consensus        75 ---------------i~~vv~D~~~~~~--~grv~a~~~~~r~~Gl  103 (103)
T cd00432          75 ---------------IKKVVFDRGGYRY--HGRVKALAKGAREGGL  103 (103)
T ss_pred             ---------------CCEEEEeCCCccc--ccHHHHHHHHHHHcCC
Confidence                           8889999999999  9999999999999997

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=99.92  E-value=1.4e-25  Score=190.33  Aligned_cols=90  Identities=31%  Similarity=0.301  Sum_probs=84.3

Q ss_pred             cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756          92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG  171 (360)
Q Consensus        92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g  171 (360)
                      +|||+|++||+|||||||++  ++|+|||||||.|++ ++   +++|++|||+||++||+||+++        |      
T Consensus        24 rpRL~V~rSnk~iyaQiIdd--~~~~tlasaST~ek~-~~---~~~n~~aA~~vG~~la~ra~~~--------g------   83 (114)
T TIGR00060        24 RPRLVVFRSNRHIYAQVIDD--SKSEVLASASTLEKK-LK---YTGNKDAAKKVGKLVAERLKEK--------G------   83 (114)
T ss_pred             CcEEEEEEeCCeEEEEEEEC--CCCEEEEEEecchhh-hc---CCCCHHHHHHHHHHHHHHHHHC--------C------
Confidence            89999999999999999986  599999999999986 22   6789999999999999999998        4      


Q ss_pred             cceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         172 EEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       172 e~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                                   +.+++||+|.+++  ||||.|+++||+|+||+
T Consensus        84 -------------i~~vvfDrgg~~Y--hGrv~A~a~~aRe~Gl~  113 (114)
T TIGR00060        84 -------------IKDVVFDRGGYKY--HGRVAALAEAAREAGLN  113 (114)
T ss_pred             -------------CCEEEEeCCCCcc--hHHHHHHHHHHHHhCCC
Confidence                         8889999999999  99999999999999996

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=99.87  E-value=1.2e-22  Score=187.16  Aligned_cols=100  Identities=24%  Similarity=0.295  Sum_probs=88.9

Q ss_pred             HHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc------------CCCcHHHHHHHHHH
Q psy5756          81 IVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKV------------GLTNYAAAYATGLL  148 (360)
Q Consensus        81 i~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~------------g~tN~aAAYltGlL  148 (360)
                      |.|+|.     +|||+|++||+|||||||||  ..+.|||||||.+....+..+            .++|++||+.||.+
T Consensus        99 i~~gkr-----rPRLsV~RSnkHIYAQIIDD--~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~  171 (211)
T PTZ00032         99 IIKGKR-----RPRLTLKNTNNQMYATIVDD--YTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKL  171 (211)
T ss_pred             HHcCCC-----cceEEEEecCCeEEEEEEEC--CCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHH
Confidence            556764     69999999999999999997  489999999999987433222            57899999999999


Q ss_pred             HHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         149 LARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       149 lAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                      ||+||+++        |                   +.+++||+|.++|  ||||.|++.||+++||.
T Consensus       172 IAerAl~k--------G-------------------I~kVvFDRgGy~Y--HGRVkALAdaARe~GLk  210 (211)
T PTZ00032        172 IGRKALSK--------G-------------------ISKVRFDRAHYKY--AGKVEALAEGARAVGLQ  210 (211)
T ss_pred             HHHHHHHC--------C-------------------CCEEEEeCCCCee--hhHHHHHHHHHHHcCCC
Confidence            99999999        4                   8899999999999  99999999999999996

>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q

Probab=99.71  E-value=7.4e-19  Score=145.51  Aligned_cols=52  Identities=52%  Similarity=0.798  Sum_probs=46.7

Q ss_pred             HHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhh-cchhhhc
Q psy5756         236 AEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL-GMTKSSF  288 (360)
Q Consensus       236 aEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~-~m~~~~~  288 (360)
                      ||+||+||+|+|||+||+.|+|||||+|++|||+||++ |++|+++ +||+++.
T Consensus         1 Ae~hr~rI~G~HVaeYm~~L~eed~e~yk~qFs~yik~-gi~p~~le~~y~~~h   53 (94)
T PF14204_consen    1 AEVHRDRIFGGHVAEYMEELKEEDPEKYKRQFSKYIKK-GIEPDDLEEMYKKAH   53 (94)
T ss_dssp             -HCHHHCSSSSHCHHHHHSCSSCSSSTCSHHHHHHHHH-HCSSSHHHHHHHHHH
T ss_pred             ChHHHhCcCchhHHHHHHHHHhhCHHHHHHHHHHHHHC-CCChhHHHHHHHHHH
Confidence            79999999999999999999999999999999999999 6665555 9999875

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=94.28  E-value=0.21  Score=48.03  Aligned_cols=91  Identities=16%  Similarity=0.327  Sum_probs=66.5

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCE-EEEEEecCCccccccccCCCcH-HHHHHHHHHHHHHHHhhcCccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDH-IICSAYSHELPKYGIKVGLTNY-AAAYATGLLLARRLLKNLNLDRLYVGCT  167 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~-tLaSAsS~EL~kyG~k~g~tN~-aAAYltGlLlAkRALkk~gld~~Y~G~~  167 (360)
                      +.+.++||.-|-+++++||+|.  .|+. ||+-+|+-...   .++...++ -||+.++.-+|++|++. ||        
T Consensus       116 ~~~f~~vI~aSfNNTIVTlTD~--~GNv~tl~WSSAG~~G---FKGsKKsTpfAAQ~aae~aakka~~~-GI--------  181 (233)
T PTZ00090        116 TDRFMLVITTSKNNVHAQVVNK--SKNYKTVFGSFAGNVG---FRKKLQQSERCAYRIGENIAKKCRRL-GI--------  181 (233)
T ss_pred             CCcEEEEEEeccCcEEEEEEeC--CCCEEEEEEEcccccC---cccCccCCHHHHHHHHHHHHHHHHHc-CC--------
Confidence            4568999999999999999996  4775 78888876664   33344444 47889999999999875 33        


Q ss_pred             cccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         168 EVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       168 ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                                        +.  +||=+..+  |+ .-+|+++...+||.|
T Consensus       182 ------------------k~--V~V~vKGp--Gg-REtALRaL~~~GLkI  208 (233)
T PTZ00090        182 ------------------FA--VDIKFRRI--MR-VETVLQAFYANGLQV  208 (233)
T ss_pred             ------------------eE--EEEEEeCC--Ch-HHHHHHHHHHCCCEE
Confidence                              22  34444444  54 678899999999876

>KOG3333|consensus

Probab=94.13  E-value=0.11  Score=47.95  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=52.0

Q ss_pred             ceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          93 YRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        93 pRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      +||-|-+|..|+-+-+...   .|.|++||||.|.....---+++|+.|+--+|..||.|.|..
T Consensus        61 h~lev~~~~~hveg~v~H~---~~gvvvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqs  121 (188)
T KOG3333|consen   61 HRLEVIRTQHHVEGLVEHQ---NGGVVVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQS  121 (188)
T ss_pred             eEEEEeecccceeeeeeEe---cCCEEEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHh
Confidence            5899999999999999886   577888999999874322236789999999999999999998

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.24  E-value=2.1  Score=36.24  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             EEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          95 LIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        95 LVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      +-|+-|.+++++.+.|.   .+.+++++|+-.+.-.|-+  .....||+.++..++++|.+.
T Consensus         3 ihI~~s~NNt~vtlTd~---~G~~~~~~S~G~~gfK~~r--k~t~~Aa~~~a~~~~~~~~~~   59 (110)
T PF00411_consen    3 IHIKSSFNNTIVTLTDL---KGNVLFWSSAGSLGFKGAR--KSTPYAAQQAAEKIAKKAKEL   59 (110)
T ss_dssp             EEEEEESSEEEEEEEET---TSEEEEEEETTTSSTTTTC--GSSHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEecCCCEEEEEECC---CCCEEEEEecccccccccc--ccCHHHHHHHHHHHHHHHHHc
Confidence            45788999999999996   5778888888666433322  356788999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>CHL00041 rps11 ribosomal protein S11

Probab=86.91  E-value=2.7  Score=36.22  Aligned_cols=67  Identities=16%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          85 KNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        85 KnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      |+|.+.+.--+-|+-|-+++++-+.|.   .+.+++.+|+-.+...|-+  ....-||+.++.-++++|++.
T Consensus         6 ~~~~~~~~gi~hI~~t~NNTiiTlTd~---~G~~l~~~S~G~~gfKg~r--K~T~~Aa~~~a~~~~~~~~~~   72 (116)
T CHL00041          6 KSKRKIPKGVIHIQASFNNTIVTVTDV---RGRVISWSSAGACGFKGAR--KGTPFAAQTAAENAIRTVIDQ   72 (116)
T ss_pred             cccccceeEEEEEEcccCCEEEEEEcC---CCCEEEEEecCceeeCCCc--cCCHHHHHHHHHHHHHHHHHc
Confidence            445556666788999999999999986   3468998888766433322  233458888999999998875

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=86.89  E-value=3.6  Score=36.69  Aligned_cols=58  Identities=12%  Similarity=-0.025  Sum_probs=44.0

Q ss_pred             eEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcH-HHHHHHHHHHHHHHHhh
Q psy5756          94 RLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNY-AAAYATGLLLARRLLKN  156 (360)
Q Consensus        94 RLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~-aAAYltGlLlAkRALkk  156 (360)
                      =+-|+-|-+++++.|.|.  .|..||+.+|+-...+.|-+   .++ -||..++.-+|+++++.
T Consensus        11 i~hI~as~NNTivtvTD~--~G~~~~~~~S~G~~g~kg~k---K~TpyAAq~aae~~~~~~~~~   69 (132)
T PRK09607         11 IAHIYASFNNTIITITDL--TGAETIAKSSGGMVVKADRD---ESSPYAAMQAAEKAAEDAKEK   69 (132)
T ss_pred             EEEEEcccCCeEEEEEcC--CCCEEEEEecCcceeeCCCc---cCCHHHHHHHHHHHHHHHHHc
Confidence            355777889999999995  47789998888766554432   334 37899999999999875

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=83.71  E-value=5.5  Score=36.32  Aligned_cols=99  Identities=20%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             EEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCC-CcHH-HHHHHHHHHHHHHHhhcCcccccccccccccc
Q psy5756          95 LIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGL-TNYA-AAYATGLLLARRLLKNLNLDRLYVGCTEVTGE  172 (360)
Q Consensus        95 LVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~-tN~a-AAYltGlLlAkRALkk~gld~~Y~G~~ev~ge  172 (360)
                      +-|+-|-+++++.|.|.  .| .+++.+||--.   |.++.. .+++ ||..+..-+|+++++.        |       
T Consensus        31 ~hI~as~NNTiItiTD~--~G-~~~~w~SsG~~---gfKg~r~KsTpyAAq~aa~~~a~k~~~~--------G-------   89 (149)
T PTZ00129         31 AHIFASFNDTFIHVTDL--SG-RETLVRVTGGM---KVKADRDESSPYAAMMAAQDVAARCKEL--------G-------   89 (149)
T ss_pred             EEEEcccCCeEEEEEcc--cC-CEEEEEecCcc---eecccccCCCHHHHHHHHHHHHHHHHHc--------C-------
Confidence            55777888999999995  35 45555665444   333343 4443 7888889999998875        3       


Q ss_pred             ceeecccCCCCCceEEEEee---ccccc-ccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756         173 EFSVESVDKGPGAFRCYLDV---GLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPG  226 (360)
Q Consensus       173 ~~~vE~~dg~~~~f~avLDi---GL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg  226 (360)
                                  +..+-+=+   |...+ ..|.==-+|+++...+||.|         ||+--|-|+
T Consensus        90 ------------i~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhNGcRppk  144 (149)
T PTZ00129         90 ------------INALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDSTRRKG  144 (149)
T ss_pred             ------------CeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCCC
Confidence                        22222222   22222 11222245788888899875         999888876

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=83.64  E-value=6.5  Score=33.36  Aligned_cols=57  Identities=12%  Similarity=0.049  Sum_probs=41.9

Q ss_pred             EEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          95 LIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        95 LVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      +-|+-|.+++++-+.|.  .|+ +++.+|+--+...|-.  ....-||+.++..+++++++.
T Consensus         3 ~hI~~s~NNT~itlTd~--~g~-~~~~~S~G~~gfkg~r--k~t~~Aa~~~a~~~~~~~~~~   59 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP--QGN-VLSWASAGAVGFKGSK--KSTPYAAQLAAEDAAKKAKEF   59 (108)
T ss_pred             EEEEccCCCEEEEEEcC--CCC-EEEEEecCceeeCCCc--cCCHHHHHHHHHHHHHHHHHc
Confidence            34778899999999996  355 8888887666443432  334667889999999999885

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>PRK05309 30S ribosomal protein S11; Validated

Probab=80.92  E-value=10  Score=33.24  Aligned_cols=61  Identities=13%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             CcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          91 PKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        91 pKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      +.--+-|+-|.+++++-+.|.   .+.+++.+|+-.+...|-.  ....-||+.++.-+++++++.
T Consensus        16 ~~gi~hI~~t~NNTiitlTd~---~G~~~~~~S~G~~gfKg~r--K~T~~Aa~~aa~~~~~~~~~~   76 (128)
T PRK05309         16 PSGVAHIHATFNNTIVTITDR---QGNVISWASAGGLGFKGSR--KSTPYAAQVAAEDAAKKAKEH   76 (128)
T ss_pred             ceeEEEEEccCCCEEEEEEcC---CCCEEEEEecCccEeCCCc--cCCHHHHHHHHHHHHHHHHHc
Confidence            345788999999999999995   3557787777655433322  234558899999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
2zkr_n	297	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-87
3izr_Q	304	Localization Of The Large Subunit Ribosomal Protein		3e-62
3zf7_u	308	High-resolution Cryo-electron Microscopy Structure		7e-60
3u5e_D	297	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-57
3izs_Q	297	Localization Of The Large Subunit Ribosomal Protein		2e-57
4a17_M	301	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-56
3jyw_E	237	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-55
1s1i_E	222	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		4e-55
1s72_N	187	Refined Crystal Structure Of The Haloarcula Marismo		9e-16
1ffk_K	186	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-15
3j21_O	203	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-12
4gmn_B	49	Structural Basis Of Rpl5 Recognition By Syo1 Length		4e-10

>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297

Iteration: 1
 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 148/227 (65%), Positives = 179/227 (78%)
Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
            CQ+AY+RIEGD I+C+ Y+HELPKYG+KVG                             
Sbjct: 61  ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180
Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 304

Iteration: 1
 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/227 (51%), Positives = 152/227 (66%), Gaps = 4/227 (1%)
Query: 43  LEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNK 102
           L+ GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NK
Sbjct: 3   LQGGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNK 59
Query: 103 DITCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXX 162
           DIT Q+ Y+ I GD ++ +AYSHELP+YG++VG                           
Sbjct: 60  DITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQE 119
Query: 163 XVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVK 222
             G  E TGE++ VE  D+    FR  LDVGL++T+TG +VFGA+KGA+DGGL+IPHS K
Sbjct: 120 YEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDK 178
Query: 223 RFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           RF G+  + K  +++IHRK+I+G HVA+YMR ++EE+ E F+  FSE
Sbjct: 179 RFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSE 225

>pdb|3ZF7|UU Chain u, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 308

Iteration: 1
 Score =  227 bits (579), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 145/220 (65%), Gaps = 6/220 (2%)
Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M FVKVVKNK Y+KR+QVK++RRREGKTDY+AR+R+++QDK K+ TPKYRL+VR +N+D+
Sbjct: 1   MTFVKVVKNKAYYKRFQVKYRRRREGKTDYHARRRMVLQDKTKFGTPKYRLVVRITNRDV 60
Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
             Q+ ++++ GD ++ +AYSHELP +GI+ G                            V
Sbjct: 61  IAQIVHAKVVGDEVVMAAYSHELPLFGIEHGLTNYAAAYATGLLVARRMLAKLGLAEKFV 120
Query: 165 GCTEVTGEEFSVESVDKGPG------AFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIP 218
           G  EV G   +V + D   G       F+  LDVGL +T+TGA+VFG +KGAVDGGL +P
Sbjct: 121 GVKEVDGSYAAVRTKDDDQGDDESRFPFKAILDVGLARTTTGARVFGVLKGAVDGGLAVP 180
Query: 219 HSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEE 258
           H   RFPGY+ ES   NA++HR  IFG HVA+Y++Q+ EE
Sbjct: 181 HRPNRFPGYNKESDALNAKVHRDRIFGRHVADYLKQVREE 220

>pdb|3U5E|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 297

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/223 (48%), Positives = 144/223 (64%)
Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M F K  K+  Y  R+Q  F+RRREGKTDYY RKRL+ Q K KYNTPKYRL+VRF+NKDI
Sbjct: 1   MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI 60
Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
            CQ+  S I GD ++ +AYSHELP+YGI  G                             
Sbjct: 61  ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK 120
Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EV GE    E+V+ GP  F+ +LD+GL +T+TGA+VFGA+KGA DGGL +PHS  RF
Sbjct: 121 GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF 180
Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQF 267
           PG+D E+++ + E+ R +IFG HV++YM +L+++D+E F   F
Sbjct: 181 PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELF 223

>pdb|3IZS|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 297

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/223 (48%), Positives = 144/223 (64%)
Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M F K  K+  Y  R+Q  F+RRREGKTDYY RKRL+ Q K KYNTPKYRL+VRF+NKDI
Sbjct: 1   MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI 60
Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
            CQ+  S I GD ++ +AYSHELP+YGI  G                             
Sbjct: 61  ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYK 120
Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EV GE    E+V+ GP  F+ +LD+GL +T+TGA+VFGA+KGA DGGL +PHS  RF
Sbjct: 121 GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF 180
Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQF 267
           PG+D E+++ + E+ R +IFG HV++YM +L+++D+E F   F
Sbjct: 181 PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELF 223

>pdb|4A17|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 301

Iteration: 1
 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/230 (45%), Positives = 144/230 (62%), Gaps = 5/230 (2%)
Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKV+K K YFKR+Q K++RRREG TDYYARKRLI+QDK+KYNTPKYRL+ R +N  I
Sbjct: 1   MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRI 60
Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 164
             Q+ Y+ ++ D ++C+A S+EL ++G+  G                             
Sbjct: 61  IAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYA 120
Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G T+V G  F+V+   K    F+  LD GL++T+TG +VFG +KGA DGG+NIPHS  RF
Sbjct: 121 GQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINIPHSESRF 180
Query: 225 PGY-----DNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           PGY     + ES  +  E H+  IFG H+  YM+ L  + +EAF++QFS+
Sbjct: 181 PGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSK 230

>pdb|3JYW|E Chain E, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 237

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 139/212 (65%)
Query: 56  YFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEG 115
           Y  R+Q  F+RRREGKTDYY RKRL+ Q K KYNTPKYRL+VRF+NKDI CQ+  S I G
Sbjct: 2   YSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITG 61
Query: 116 DHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGCTEVTGEEFS 175
           D ++ +AYSHELP+YGI  G                             G  EV GE   
Sbjct: 62  DVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYEL 121
Query: 176 VESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFN 235
            E+V+ GP  F+ +LD+GL +T+TGA+VFGA+KGA DGGL +PHS  RFPG+D E+++ +
Sbjct: 122 TEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEID 181
Query: 236 AEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQF 267
            E+ R +IFG HV++YM +L+++D+E F   F
Sbjct: 182 PELLRSYIFGGHVSQYMEELADDDEERFSELF 213

>pdb|1S1I|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 222

Iteration: 1
 Score =  211 bits (538), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 139/212 (65%)
Query: 56  YFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEG 115
           Y  R+Q  F+RRREGKTDYY RKRL+ Q K KYNTPKYRL+VRF+NKDI CQ+  S I G
Sbjct: 2   YSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITG 61
Query: 116 DHIICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGCTEVTGEEFS 175
           D ++ +AYSHELP+YGI  G                             G  EV GE   
Sbjct: 62  DVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYEL 121
Query: 176 VESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFN 235
            E+V+ GP  F+ +LD+GL +T+TGA+VFGA+KGA DGGL +PHS  RFPG+D E+++ +
Sbjct: 122 TEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEID 181
Query: 236 AEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQF 267
            E+ R +IFG HV++YM +L+++D+E F   F
Sbjct: 182 PELLRSYIFGGHVSQYMEELADDDEERFSELF 213

>pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 47/199 (23%)
Query: 59  RYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHI 118
           RY+V  +RRRE +TDY+ R RL+        + K RL+ R SNK +  Q+      GD  
Sbjct: 6   RYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQLVTLGPNGDDT 58
Query: 119 ICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGCTEVTGEEFSVES 178
           + SA+S +L +YG +                              +    +TG    + +
Sbjct: 59  LASAHSSDLAEYGWEA-------------------------PTGNMPSAYLTGLLAGLRA 93
Query: 179 VDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEI 238
            +   G     LD+GL   + G+KVF   +GA+D GL+IPH           + D  A+ 
Sbjct: 94  QEA--GVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPH-----------NDDVLADW 140
Query: 239 HRKHIFGLHVAEYMRQLSE 257
            R    G H+AEY  QL E
Sbjct: 141 QRTR--GAHIAEYDEQLEE 157

>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 47/199 (23%)
Query: 59  RYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHI 118
           RY+V  +RRRE +TDY+ R RL+        + K RL+ R SNK +  Q+      GD  
Sbjct: 5   RYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQLVTLGPNGDDT 57
Query: 119 ICSAYSHELPKYGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGCTEVTGEEFSVES 178
           + SA+S +L +YG +                              +    +TG    + +
Sbjct: 58  LASAHSSDLAEYGWEA-------------------------PTGNMPSAYLTGLLAGLRA 92
Query: 179 VDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEI 238
            +   G     LD+GL   + G+KVF   +GA+D GL+IPH           + D  A+ 
Sbjct: 93  QEA--GVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPH-----------NDDVLADW 139
Query: 239 HRKHIFGLHVAEYMRQLSE 257
            R    G H+AEY  QL E
Sbjct: 140 QRTR--GAHIAEYDEQLEE 156

>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 203

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 48/201 (23%)
Query: 69  EGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELP 128
           EGKT+Y  R +L+        + K RL+VR S      Q+     +GD  + SA++ EL 
Sbjct: 16  EGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELI 68
Query: 129 K-YGIKVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGCTEVTGEEFSVESVDKGPGAFR 187
           + +G K                                   + G     ++  K  G   
Sbjct: 69  RDFGWK-------------------------GHCGNTPSAYLLGLLIGYKA--KQAGIEE 101
Query: 188 CYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLH 247
             LD+GL     G+ VF  +KGAVD GLN+PHS + FP   +E +          I G H
Sbjct: 102 AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---DEYR----------IRGEH 148
Query: 248 VAEYMRQLSEEDDEAFKRQFS 268
           +AEY + L E+D+E F+RQF 
Sbjct: 149 IAEYAKMLKEQDEEKFRRQFG 169

>pdb|4GMN|B Chain B, Structural Basis Of Rpl5 Recognition By Syo1 Length = 49

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDK 85
          M F K+VKN  Y+ R+Q KFKRRR+GKTDYYARKRLI Q K
Sbjct: 1  MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAK 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	1e-118
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	1e-116
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	1e-115
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	1e-111
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	8e-73

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297

 Score =  343 bits (881), Expect = e-118
 Identities = 168/227 (74%), Positives = 202/227 (88%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRL++QDKNKYNTPKYR+IVR +N+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+AY+RIEGD I+C+ Y+HELPKYG+KVGLTNYAAAY TGLLLARRLL    +D++Y 
Sbjct: 61  ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EVTG+E++VES+D  PGAF CYLD GL +T+TG KVFGA+KGAVDGGL+IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERV 271
           PGYD+ESK+FNAE+HRKHI G +VA+YMR L EED++A+K+QFS+ +
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYI 227

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297

 Score =  337 bits (865), Expect = e-116
 Identities = 129/225 (57%), Positives = 167/225 (74%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           M F K  K+  Y  R+Q  F+RRREGKTDYY RKRL+ Q K KYNTPKYRL+VRF+NKDI
Sbjct: 1   MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
            CQ+  S I GD ++ +AYSHELP+YGI  GLTN+AAAYATGLL+ARR L+ L LD  Y 
Sbjct: 61  ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G  EV GE    E+V+ GP  F+ +LD+GL +T+TGA+VFGA+KGA DGGL +PHS  RF
Sbjct: 121 GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF 180

Query: 225 PGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           PG+D E+++ + E+ R +IFG HV++YM +L+++D+E F   F  
Sbjct: 181 PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKG 225

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301

 Score =  335 bits (860), Expect = e-115
 Identities = 126/230 (54%), Positives = 168/230 (73%), Gaps = 5/230 (2%)

Query: 45  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDI 104
           MGFVKV+K K YFKR+Q K++RRREG TDYYARKRLI+QDK+KYNTPKYRL+ R +N  I
Sbjct: 1   MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRI 60

Query: 105 TCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYV 164
             Q+ Y+ ++ D ++C+A S+EL ++G+  GL +YAAAYATGLLLARRLLK + LD +Y 
Sbjct: 61  IAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYA 120

Query: 165 GCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRF 224
           G T+V G  F+V+   K    F+  LD GL++T+TG +VFG +KGA DGG+NIPHS  RF
Sbjct: 121 GQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINIPHSESRF 180

Query: 225 PGY-----DNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSE 269
           PGY     + ES  +  E H+  IFG H+  YM+ L  + +EAF++QFS+
Sbjct: 181 PGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSK 230

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187

 Score =  223 bits (570), Expect = 8e-73
 Identities = 65/220 (29%), Positives = 90/220 (40%), Gaps = 53/220 (24%)

Query: 56  YFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEG 115
              RY+V  +RRRE +TDY+ R RL+        + K RL+ R SNK +  Q+      G
Sbjct: 3   TGPRYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQLVTLGPNG 55

Query: 116 DHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFS 175
           D  + SA+S +L +YG +    N  +AY TGLL   R  +                    
Sbjct: 56  DDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE-------------------- 95

Query: 176 VESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFN 235
                   G     LD+GL   + G+KVF   +GA+D GL+IPH+      +        
Sbjct: 96  -------AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQ------- 141

Query: 236 AEIHRKHIFGLHVAEYMRQLSEE------DDEAFKRQFSE 269
                    G H+AEY  QL E       D       F E
Sbjct: 142 ------RTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDE 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	100.0
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	100.0
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	100.0
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	100.0
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	100.0
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	100.0
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	99.96
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	99.96
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	99.95
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	99.94
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	99.93
4gmn_B	49	60S ribosomal protein L5-like protein; ARM, heat,	99.9
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	90.52
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	90.48
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	87.32
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	83.85
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	81.87
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	80.09

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=100.00  E-value=1.8e-108  Score=782.64  Aligned_cols=243  Identities=53%  Similarity=0.921  Sum_probs=236.3

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS  124 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS  124 (360)
                      |+||||+||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||+++++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (297)
T 3u5e_D            1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS   80 (297)
T ss_dssp             -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756         125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF  204 (360)
Q Consensus       125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF  204 (360)
                      +||+++||+++++|++|||+||+|||+||+++||||++|+|++|+|||+|+||++||+|++|+||||+||+|||+|||||
T Consensus        81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf  160 (297)
T 3u5e_D           81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF  160 (297)
T ss_dssp             GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred             cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCch-hhcc
Q psy5756         205 GAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSE-QLGM  283 (360)
Q Consensus       205 AalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~-~~~m  283 (360)
                      ||||||+||||+||||+++|||||+|+|+||||+|++||+|+|||+||++|+|||||+|++|||+||++ |++|+ .++|
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~-~i~~~~~e~~  239 (297)
T 3u5e_D          161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLAD-DIDADSLEDI  239 (297)
T ss_dssp             HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHT-TCCGGGHHHH
T ss_pred             hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHc-CCChhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 55555 4599


Q ss_pred             hhhhc
Q psy5756         284 TKSSF  288 (360)
Q Consensus       284 ~~~~~  288 (360)
                      |+++.
T Consensus       240 y~~~h  244 (297)
T 3u5e_D          240 YTSAH  244 (297)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=100.00  E-value=1.4e-107  Score=777.28  Aligned_cols=244  Identities=51%  Similarity=0.897  Sum_probs=237.9

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS  124 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS  124 (360)
                      |+||||+||+|||+|||||||||||||||||+|++||+||||||||||||||||+||+|||||||+++++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (301)
T 4a17_M            1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS   80 (301)
T ss_dssp             -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred             CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756         125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF  204 (360)
Q Consensus       125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF  204 (360)
                      +||+++||+++++|++|||+||+|||+||+++||||++|+|++|+|||+|+||++||+|++|+||||+||+|||+|||||
T Consensus        81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf  160 (301)
T 4a17_M           81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF  160 (301)
T ss_dssp             THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred             ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccccccceecccCCcccCCCCCCC-----CCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhC--CCCC
Q psy5756         205 GAMKGAVDGGLNIPHSVKRFPGYDNES-----KDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGG--WGTL  277 (360)
Q Consensus       205 AalKGAvDgGL~IPHsekrfPg~d~e~-----ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~--~~~~  277 (360)
                      ||||||+||||+||||+++|||||+|+     |+||||+||+||+|+|||+||++|+|||||+|++|||+||++  +..+
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~  240 (301)
T 4a17_M          161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV  240 (301)
T ss_dssp             HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence            999999999999999999999999987     999999999999999999999999999999999999999998  7777


Q ss_pred             chhhcchhhhc
Q psy5756         278 SEQLGMTKSSF  288 (360)
Q Consensus       278 ~~~~~m~~~~~  288 (360)
                      ...++||+++.
T Consensus       241 ~~~e~~y~~~h  251 (301)
T 4a17_M          241 DSVEKLFTKVH  251 (301)
T ss_dssp             SCHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            77779999875

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.1e-105  Score=763.07  Aligned_cols=245  Identities=70%  Similarity=1.171  Sum_probs=227.0

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS  124 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS  124 (360)
                      |+||||+||+|||+|||||||||||||||||+|++||.||||||||||||||||+||+|||||||++.++||+|||||||
T Consensus         1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS   80 (297)
T 2zkr_n            1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA   80 (297)
T ss_dssp             ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756         125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF  204 (360)
Q Consensus       125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF  204 (360)
                      +||+++||+++++|++|||+||+|||+|||++||||++|+|++|+|||+|+||+.||+|+||+||||+||++||+|||||
T Consensus        81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf  160 (297)
T 2zkr_n           81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF  160 (297)
T ss_dssp             GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred             CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhhcch
Q psy5756         205 GAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMT  284 (360)
Q Consensus       205 AalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~~m~  284 (360)
                      |+||||+||||+||||+++|||||+|+|+||||+||+||+|+|||+||++|+|||||+|++|||+||+++..+...++||
T Consensus       161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y  240 (297)
T 2zkr_n          161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY  240 (297)
T ss_dssp             HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred             HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999944444455999


Q ss_pred             hhhcc
Q psy5756         285 KSSFK  289 (360)
Q Consensus       285 ~~~~~  289 (360)
                      +++..
T Consensus       241 ~~~~~  245 (297)
T 2zkr_n          241 KKAHA  245 (297)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98653

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.4e-72  Score=510.24  Aligned_cols=186  Identities=39%  Similarity=0.555  Sum_probs=174.9

Q ss_pred             CCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcc-ccccc
Q psy5756          55 QYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELP-KYGIK  133 (360)
Q Consensus        55 aYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~-kyG~k  133 (360)
                      |--|||||||||||||||||++|++|++|++       |||+||+||+|||||||+++++||+|||||||+|++ ++||+
T Consensus         2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~k-------pRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~   74 (203)
T 3j21_O            2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGK-------PRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK   74 (203)
T ss_dssp             TTTTCSCCCCHHHHHTCCCHHHHHHHHTTCC-------CEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred             CCCCccccchhhHHHHhHHHHHHHHHHhcCC-------CEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence            3458999999999999999999999999996       999999999999999999778899999999999999 79999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccc
Q psy5756         134 VGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDG  213 (360)
Q Consensus       134 ~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDg  213 (360)
                      .+++|++|||+||+|||+||+++        |                   +.+||||+|++++|+||||||+++||+||
T Consensus        75 ~~~~N~~AA~~vG~llA~Ral~k--------G-------------------I~~vvfDrgg~~y~~hgRV~Ala~gAre~  127 (203)
T 3j21_O           75 GHCGNTPSAYLLGLLIGYKAKQA--------G-------------------IEEAILDIGLHPPVRGSSVFAVLKGAVDA  127 (203)
T ss_dssp             SCTTSHHHHHHHHHHSSSSTTSS--------C-------------------CCCCEEECCSSCCCTTSHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHhC--------C-------------------CCEEEEecCcceeccCcchhhhhhhcccC
Confidence            99999999999999999999998        4                   77899999999999999999999999999


Q ss_pred             ceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchh-hcchhhhc
Q psy5756         214 GLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQ-LGMTKSSF  288 (360)
Q Consensus       214 GL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~-~~m~~~~~  288 (360)
                      ||+||||+++|||+             +||+|+|||+||++|+|||||+|++|||+|||+ |++|++ ++||++..
T Consensus       128 GL~iPhs~~~fp~~-------------~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~-~~~~~~~~~~~~~~~  189 (203)
T 3j21_O          128 GLNVPHSPEIFPDE-------------YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVK-GLDPEKLPEHFEEVK  189 (203)
T ss_dssp             TCCCCCCSSCSCCH-------------HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCC-SSSSSCCHHHHHHHH
T ss_pred             CeecccCCccCCCc-------------ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHc-CCChhHHHHHHHHHH
Confidence            99999999999995             799999999999999999999999999999999 555554 59998764

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=100.00  E-value=6.1e-64  Score=452.53  Aligned_cols=175  Identities=36%  Similarity=0.526  Sum_probs=162.2

Q ss_pred             CCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc
Q psy5756          55 QYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKV  134 (360)
Q Consensus        55 aYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~  134 (360)
                      |--||||||||||||||||||+|++|+.+++       |||+||+||+|||||||+++++||+|||||||+|++++||+.
T Consensus         2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~r-------pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~   74 (187)
T 1vq8_N            2 ATGPRYKVPMRRRREARTDYHQRLRLLKSGK-------PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA   74 (187)
T ss_dssp             CCSTTCCCCCHHHHTTCCCHHHHHHHHTTCS-------CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred             CCCCcccccccchhccchhHHHHHHHHhcCC-------CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence            3458999999999999999999999999987       999999999999999997778899999999999999889987


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccc
Q psy5756         135 GLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGG  214 (360)
Q Consensus       135 g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgG  214 (360)
                      +++|++|||+||+|||+||+++        |                   +.+||||+|++++++|+||||+++||+|+|
T Consensus        75 ~~~N~~AA~~vG~llA~Ral~k--------G-------------------I~~vvfDrgg~~yh~GgRV~Ala~gAre~G  127 (187)
T 1vq8_N           75 PTGNMPSAYLTGLLAGLRAQEA--------G-------------------VEEAVLDIGLNSPTPGSKVFAIQEGAIDAG  127 (187)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHT--------T-------------------CCBCEEECTTSCCCTTCHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHC--------C-------------------CCEEEEcCCCceeccchHHHHHHHHhhcCC
Confidence            8999999999999999999999        4                   778999999999999999999999999999


Q ss_pred             eecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhh-cchhhhc
Q psy5756         215 LNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL-GMTKSSF  288 (360)
Q Consensus       215 L~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~-~m~~~~~  288 (360)
                      |++|||+++|||+             +||+|+||||||++|.   |        +|||+ |++|+++ +||+++.
T Consensus       128 L~fph~~~~fp~~-------------~ri~G~hva~y~~~l~---~--------~y~~~-~~~~~~l~~~~~~~~  177 (187)
T 1vq8_N          128 LDIPHNDDVLADW-------------QRTRGAHIAEYDEQLE---E--------PLYSG-DFDAADLPEHFDELR  177 (187)
T ss_dssp             CBCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS---S--------CSSSS-CSCSSCCHHHHHHHH
T ss_pred             EeccCCCccCCCC-------------ceeccEEHHHHHHHhh---H--------HHHHC-CCCHHHHHHHHHHHH
Confidence            9999999999996             7999999999999994   2        89999 6666554 8988753

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=99.96  E-value=1.6e-30  Score=219.14  Aligned_cols=104  Identities=25%  Similarity=0.229  Sum_probs=95.3

Q ss_pred             HHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHH
Q psy5756          75 YARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLL  154 (360)
Q Consensus        75 ~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRAL  154 (360)
                      +-|++|..+       ++|||+|++||+|||||||++  ++|+|||||||+|++.++|..+++|++|||+||++||+||+
T Consensus        12 r~R~ki~~~-------~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral   82 (116)
T 3r8s_O           12 RARRKLQEL-------GATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERAL   82 (116)
T ss_dssp             HHHHHHHTT-------TCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccC-------CCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHH
Confidence            456666543       569999999999999999985  69999999999999999999899999999999999999999


Q ss_pred             hhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         155 KNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       155 kk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                      ++        |                   +.+++||+|++++  |+||+|+++||+|+||+
T Consensus        83 ~~--------G-------------------I~~vvfDrgg~~y--hGrV~Ala~~are~Gl~  115 (116)
T 3r8s_O           83 EK--------G-------------------IKDVSFDRSGFQY--HGRVQALADAAREAGLQ  115 (116)
T ss_dssp             TT--------T-------------------CCCCEEECTTSCS--SSHHHHHHHHHHHTTCC
T ss_pred             HC--------C-------------------CCEEEEecCCCcc--cHHHHHHHHHHHHhCCC
Confidence            98        5                   7789999999999  99999999999999996

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=99.96  E-value=2.5e-30  Score=219.52  Aligned_cols=95  Identities=29%  Similarity=0.296  Sum_probs=87.1

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      +++|||+|++||+|||||||++  ++|+|||||||+|++ ++ ..+++|++|||+||+|||+||+++        |    
T Consensus        26 ~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~llA~Ral~~--------G----   89 (120)
T 1ovy_A           26 TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGELVAKRALEK--------G----   89 (120)
T ss_dssp             SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHHHHHHHHHH--------S----
T ss_pred             CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHHHHHHHHHC--------C----
Confidence            6789999999999999999985  699999999999998 44 447899999999999999999999        5    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                                     +.+|+||+|+++|  |+||+|+++||+|+||+.
T Consensus        90 ---------------I~~vvfDrgg~~y--hgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           90 ---------------IKQVVFDRGGYLY--HGRVKALADAAREAGLEF  120 (120)
T ss_dssp             ---------------SSCCCCCSTTCSS--CSSTHHHHHHHHHHHCCC
T ss_pred             ---------------CCEEEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence                           6678999999999  999999999999999963

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=99.95  E-value=1e-28  Score=207.74  Aligned_cols=91  Identities=32%  Similarity=0.276  Sum_probs=84.6

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      ||+|||+|++||+|||||||++  ++|+|||||||+|++.   +  ++|++|||+||++||+||+++        |    
T Consensus        21 t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~llA~ra~~~--------G----   81 (112)
T 3v2d_S           21 TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRALAEKALAL--------G----   81 (112)
T ss_dssp             TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHHHHHHHHTT--------T----
T ss_pred             CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHHHHHHHHHC--------C----
Confidence            4689999999999999999985  6999999999999973   2  689999999999999999998        5    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                                     +.+++||+|++++  |+||+|+++||+|+||+
T Consensus        82 ---------------I~~vvfDrgg~~y--hGrV~Ala~~are~GL~  111 (112)
T 3v2d_S           82 ---------------IKQVAFDRGPYKY--HGRVKALAEGAREGGLE  111 (112)
T ss_dssp             ---------------CCBCEEECTTSCS--CSSTTHHHHHHHHTTCB
T ss_pred             ---------------CCEEEEecCCCcc--cHHHHHHHHHHHHcCCC
Confidence                           7789999999999  99999999999999996

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=99.94  E-value=2.5e-29  Score=212.02  Aligned_cols=91  Identities=26%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      ++||||+|++||+|||||||++  ++|+|||||||+||      .+++|++|||+||++||+||+++        |    
T Consensus        24 ~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~llA~Ral~~--------G----   83 (114)
T 2zjr_L           24 SGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKALAAAAAEK--------G----   83 (114)
T ss_dssp             TCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHHHHHHHHTT--------C----
T ss_pred             CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHHHHHHHHHC--------C----
Confidence            6789999999999999999975  69999999999996      26789999999999999999998        5    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI  217 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I  217 (360)
                                     +.+|+||+|+++|  |+||+|+++||+|+||++
T Consensus        84 ---------------I~~vvfDrgg~~y--hgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           84 ---------------IKQVVFDRGSYKY--HGRVKALADAAREGGLDF  114 (114)
T ss_dssp             ---------------CCCCEECCCSSCS--CSHHHHHHHHHHHHC---
T ss_pred             ---------------CCEEEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence                           7779999999999  999999999999999974

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.93  E-value=8.2e-28  Score=213.15  Aligned_cols=95  Identities=23%  Similarity=0.202  Sum_probs=86.1

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccc---cccccCCCcHHHHHHHHHHHHHHHHhhcCcccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPK---YGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGC  166 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~k---yG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~  166 (360)
                      ..+|||+|++||+|||||||++  ++|+|||||||.|.+.   .+| +.++|++||++||++||+||+++        | 
T Consensus        63 ~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~VG~liAeRA~e~--------G-  130 (161)
T 3bbo_Q           63 PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKKVGEVIASACLEK--------G-  130 (161)
T ss_dssp             SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHHHHHHSSSHHHHT--------S-
T ss_pred             CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHHHHHHHHHHHHHC--------C-
Confidence            4579999999999999999986  5999999999988542   455 56899999999999999999999        5 


Q ss_pred             ccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         167 TEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       167 ~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                                        |.+++||+|++++  ||||+|+++||+|+||+
T Consensus       131 ------------------I~~VvFDRgg~~Y--hGRVkAladaaRe~GL~  160 (161)
T 3bbo_Q          131 ------------------ITKVAFDRGGYPY--HGRVKALADAAREKGLQ  160 (161)
T ss_dssp             ------------------SCCCCCCCSSSCS--SSTTHHHHHHHTTTTCC
T ss_pred             ------------------CCEEEEeCCCCcc--hHHHHHHHHHHHHhCCc
Confidence                              7789999999999  99999999999999996

>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}

Probab=99.90  E-value=2.8e-25  Score=162.63  Aligned_cols=42  Identities=69%  Similarity=1.121  Sum_probs=41.4

Q ss_pred             cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCC
Q psy5756          45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKN   86 (360)
Q Consensus        45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKn   86 (360)
                      |+|||++||+|||||||||||||||||||||+|++||.|||+
T Consensus         1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKa   42 (49)
T 4gmn_B            1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKG   42 (49)
T ss_pred             CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999996

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=90.52  E-value=0.9  Score=38.79  Aligned_cols=63  Identities=13%  Similarity=0.036  Sum_probs=48.0

Q ss_pred             CCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          89 NTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        89 ntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      |-+...+-|+-|-+++++.|.|.   .+.+++.+|+--+...|-.  ....-||+.++..+|+++.+.
T Consensus        13 ~~~~gi~hI~as~NNTivtiTd~---~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~   75 (129)
T 2vqe_K           13 QVASGRAYIHASYNNTIVTITDP---DGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY   75 (129)
T ss_dssp             CCSEEEEEEEECSSCEEEEEECT---TSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT
T ss_pred             cccceEEEEEecCCCEEEEEEcC---CCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh
Confidence            35568899999999999999995   4567777777666433322  356778899999999999875

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=90.48  E-value=1.1  Score=38.70  Aligned_cols=107  Identities=18%  Similarity=0.095  Sum_probs=69.9

Q ss_pred             cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756          92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG  171 (360)
Q Consensus        92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g  171 (360)
                      ..-+-|+-|-+++++.|.|.  .|..||+.+|+-..-..|-+  .+..-||++++.-+|++|++. |+-.          
T Consensus        14 ~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~-Gi~~----------   78 (137)
T 3j20_M           14 WGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK-GIVG----------   78 (137)
T ss_dssp             EEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH-TEEE----------
T ss_pred             ceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc-CCeE----------
Confidence            45566888999999999995  47779998887666443321  245568999999999999886 2211          


Q ss_pred             cceeecccCCCCCceEEEEe-eccccc-ccCceeEEeeccccccceec---------ccCCcccCCC
Q psy5756         172 EEFSVESVDKGPGAFRCYLD-VGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPGY  227 (360)
Q Consensus       172 e~~~vE~~dg~~~~f~avLD-iGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg~  227 (360)
                                    ..+.|- .|..++ |.|.---+|+++...+||.|         ||+--|-||-
T Consensus        79 --------------v~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~  131 (137)
T 3j20_M           79 --------------VHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG  131 (137)
T ss_dssp             --------------EEEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred             --------------EEEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence                          112221 122322 12332345677777788875         9999999874

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=87.32  E-value=1.1  Score=38.92  Aligned_cols=63  Identities=17%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             CCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756          89 NTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN  156 (360)
Q Consensus        89 ntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk  156 (360)
                      |.+..-+-|+-|-+++++.|.|.   .+.+++.+|+--+...|-.  ....-||+.++..+|+++++.
T Consensus        26 ~~~~gi~hI~as~NNTivtiTD~---~G~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~   88 (140)
T 3bbn_K           26 KIPKGVIHVQASFNNTIVTVTDV---RGRVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ   88 (140)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECS---SSCEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT
T ss_pred             cceeeEEEEEecCCCEEEEEEcC---CCCEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh
Confidence            45668899999999999999995   4567777787665433322  356677888878888777654

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=83.85  E-value=0.83  Score=39.53  Aligned_cols=103  Identities=19%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             ceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCC--CcHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q psy5756          93 YRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGL--TNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVT  170 (360)
Q Consensus        93 pRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~--tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~  170 (360)
                      .-+-|+-|-+++++.|.|.  .|..+++ .||--+   |.|++.  +.--||.+++..+|++|++. |+-          
T Consensus        15 gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~---gfKg~r~ksTpyAAq~aa~~~a~~a~e~-Gi~----------   77 (137)
T 3u5c_O           15 GVARIYASFNDTFVHVTDL--SGKETIA-RVTGGM---KVKADRDESSPYAAMLAAQDVAAKCKEV-GIT----------   77 (137)
T ss_dssp             EECCEEEETTEEEECCEET--TSSSCCC-CCBTTT---TSCCSTTTTCHHHHHHHHHHHHHHHHHH-TCC----------
T ss_pred             EEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCc---EEeCCcccCCHHHHHHHHHHHHHHHHHc-CCe----------
Confidence            4455888999999999985  4665554 444333   334433  45568899999999999886 221          


Q ss_pred             ccceeecccCCCCCceEEEE-eeccccc-ccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756         171 GEEFSVESVDKGPGAFRCYL-DVGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPG  226 (360)
Q Consensus       171 ge~~~vE~~dg~~~~f~avL-DiGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg  226 (360)
                                    ...+.| -.|..++ +.|.==-+|+++...+||.|         ||+--|-|+
T Consensus        78 --------------~v~V~vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K  130 (137)
T 3u5c_O           78 --------------AVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG  130 (137)
T ss_dssp             --------------EEECEEECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred             --------------EEEEEEeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence                          111222 1233333 22222245777777788875         998888876

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=80.09  E-value=2.5  Score=37.15  Aligned_cols=106  Identities=17%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756          92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG  171 (360)
Q Consensus        92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g  171 (360)
                      ..-+-|+-|-+++++.|.|.  .|+.|+++++.-..-+.+-  .....-||.+++.-+|++|++. |+.           
T Consensus        28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r--~ksTpyAAq~aa~~~a~~a~e~-Gi~-----------   91 (151)
T 2xzm_K           28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADR--EESSPYAAMQAAIDVVNRCKEL-KIN-----------   91 (151)
T ss_dssp             EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGG--GGSCHHHHHHHHHHHHHHHHHH-TCC-----------
T ss_pred             eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCC--CcCCHHHHHHHHHHHHHHHHHc-CCe-----------
Confidence            36688888999999999995  5887887765543322221  1245678899999999999876 221           


Q ss_pred             cceeecccCCCCCceEEEE-eeccccc-ccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756         172 EEFSVESVDKGPGAFRCYL-DVGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPG  226 (360)
Q Consensus       172 e~~~vE~~dg~~~~f~avL-DiGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg  226 (360)
                                   ...+.| ..|..++ +.|.---+|+++...+||.|         ||+--|-|.
T Consensus        92 -------------~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K  144 (151)
T 2xzm_K           92 -------------ALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG  144 (151)
T ss_dssp             -------------EEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred             -------------EEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence                         111222 2333332 22333356778777889875         898888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1vqon1	186	c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A	3e-56
d1ovya_	97	c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill	1e-04
d2gycm1	113	c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E	1e-04
d2j01s1	86	c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {	6e-04

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  180 bits (457), Expect = 3e-56
 Identities = 65/218 (29%), Positives = 90/218 (41%), Gaps = 53/218 (24%)

Query: 58  KRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDH 117
            RY+V  +RRRE +TDY+ R RL+        + K RL+ R SNK +  Q+      GD 
Sbjct: 4   PRYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQLVTLGPNGDD 56

Query: 118 IICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVE 177
            + SA+S +L +YG +    N  +AY TGLL   R  +                      
Sbjct: 57  TLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE---------------------- 94

Query: 178 SVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAE 237
                 G     LD+GL   + G+KVF   +GA+D GL+IPH+      +          
Sbjct: 95  -----AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQ--------- 140

Query: 238 IHRKHIFGLHVAEYMRQLSEE------DDEAFKRQFSE 269
                  G H+AEY  QL E       D       F E
Sbjct: 141 ----RTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDE 174

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 26/125 (20%), Positives = 36/125 (28%), Gaps = 33/125 (26%)

Query: 92  KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLAR 151
           + RL V  SNK I  Q+          I SA + +           N  AA   G L+A+
Sbjct: 5   RPRLSVFRSNKHIYAQI--IDDTKSATIVSASTLDKEF--GLDSTNNIEAAKKVGELVAK 60

Query: 152 RLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAV 211
           R L+                            G  +   D G        +V      A 
Sbjct: 61  RALEK---------------------------GIKQVVFDRGGYL--YHGRVKALADAAR 91

Query: 212 DGGLN 216
           + GL 
Sbjct: 92  EAGLE 96

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 71  KTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKY 130
           K     R+    + K +      RL+V  + + I  QV      G  ++ +A + E    
Sbjct: 1   KKSARIRRATRARRKLQ-ELGATRLVVHRTPRHIYAQV--IAPNGSEVLVAASTVEKAIA 57

Query: 131 GIKVGLTNYAAAYATGLLLARRLLK 155
                  N  AA A G  +A R L+
Sbjct: 58  EQLKYTGNKDAAAAVGKAVAERALE 82

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 92  KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLAR 151
           + RL V  S K I  Q+     E    + SA S  L   G K        A   G  LA 
Sbjct: 1   RLRLSVFRSLKHIYAQI--IDDEKGVTLVSASSLALKLKGNKTE-----VARQVGRALAE 53

Query: 152 RLLK 155
           + L 
Sbjct: 54  KALA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	100.0
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	99.92
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	99.92
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	99.86
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	99.82
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	92.34
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	86.64

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.4e-64  Score=454.13  Aligned_cols=170  Identities=38%  Similarity=0.580  Sum_probs=161.9

Q ss_pred             CcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccC
Q psy5756          56 YFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVG  135 (360)
Q Consensus        56 YfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g  135 (360)
                      --+||||||||||||||||++|++|+.+++       ||||||+||+|||||||+++++||.|||||||+|++++||+.+
T Consensus         2 ~g~r~~vk~RRRRe~kT~y~~R~rl~~s~k-------pRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~   74 (186)
T d1vqon1           2 TGPRYKVPMRRRREARTDYHQRLRLLKSGK-------PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAP   74 (186)
T ss_dssp             CSTTCCCCCHHHHTTCCCHHHHHHHHTTCS-------CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSC
T ss_pred             CCcchhhHHHHHHhhhhhHHHHHHHhcCCC-------CeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhccccC
Confidence            458999999999999999999999997654       9999999999999999998889999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccce
Q psy5756         136 LTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGL  215 (360)
Q Consensus       136 ~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL  215 (360)
                      ++|++|||+||+|+|+||+++        |                   +++|+||+|+.+++.||||||+||||+|+||
T Consensus        75 ~~N~~AAy~~G~liA~ra~~~--------g-------------------i~~vvfD~G~~~~~yhgRV~A~akgard~GL  127 (186)
T d1vqon1          75 TGNMPSAYLTGLLAGLRAQEA--------G-------------------VEEAVLDIGLNSPTPGSKVFAIQEGAIDAGL  127 (186)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHT--------T-------------------CCBCEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhHHHHHHHHHhh--------c-------------------ccceEEeeCCCCCCccchHHHHHHHHHhcCc
Confidence            999999999999999999998        4                   8889999999999999999999999999999


Q ss_pred             ecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhccc------CHHHHHHHHHHHHh
Q psy5756         216 NIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEE------DDEAFKRQFSERVG  272 (360)
Q Consensus       216 ~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEE------Dee~YkkQFS~YiK  272 (360)
                      +||||+++||++             +||+|+|||+||+.|+||      |||.|.+||+++.+
T Consensus       128 ~Iph~~~~~p~~-------------~ri~G~hia~y~~~l~~e~~~~~~~~~~~~~~f~~~~~  177 (186)
T d1vqon1         128 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRE  177 (186)
T ss_dssp             BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCSSCSSSSCSCSSCCHHHHHHHHH
T ss_pred             cCCCCCccCCCc-------------ccccCHhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence            999999999996             799999999999999999      99999999987443

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1.4e-26  Score=187.66  Aligned_cols=94  Identities=30%  Similarity=0.295  Sum_probs=84.4

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      +.||||+|++||+|||||||++  ..+.||+++||.+.+. +++ +.+|++||++||++||+||+++        |    
T Consensus         3 ~~rpRL~V~kSnkhiyaQlIdd--~~~~tl~s~St~~k~~-~~~-~~~n~~aA~~vG~~~a~kak~~--------g----   66 (97)
T d1ovya_           3 TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKEF-GLD-STNNIEAAKKVGELVAKRALEK--------G----   66 (97)
T ss_dssp             SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTTT-CSS-CTTSHHHHHHHHHHHHHHHHHH--------S----
T ss_pred             CCCCEEEEEEeCCeEEEEEEEc--CCCeEEEEecchhhhh-ccc-ccCcHHHHHHHHHHHHHHHHHc--------C----
Confidence            4679999999999999999996  5899999999998764 222 4579999999999999999998        4    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN  216 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~  216 (360)
                                     +.+++||+|++++  |+||+|+++||+|+||+
T Consensus        67 ---------------i~~vvfDr~g~~y--hGrvka~a~~~R~~Gl~   96 (97)
T d1ovya_          67 ---------------IKQVVFDRGGYLY--HGRVKALADAAREAGLE   96 (97)
T ss_dssp             ---------------SSCCCCCSTTCSS--CSSTHHHHHHHHHHHCC
T ss_pred             ---------------CCEEEEcCCCCcc--hHHHHHHHHHHHHhCCC
Confidence                           7779999999999  99999999999999996

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-26  Score=193.14  Aligned_cols=94  Identities=24%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             CcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q psy5756          91 PKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVT  170 (360)
Q Consensus        91 pKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~  170 (360)
                      .+|||+|++||+||||||||+  .++.|||||||.|+...++...++|++||++||.+||+||+++        |     
T Consensus        20 ~~pRL~V~rSnkhiyaQiIdd--~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~--------g-----   84 (113)
T d2gycm1          20 GATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK--------G-----   84 (113)
T ss_dssp             TCCCCBEEECSSCEEEEEEET--TTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHH--------T-----
T ss_pred             CCCeEEEEEeCCcEEEEEEEc--cCCcEEEEeeehhhhhhhhcCCCcchHHHHHHHHHHHHHHHHC--------C-----
Confidence            359999999999999999996  5999999999999987777667899999999999999999999        4     


Q ss_pred             ccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccce
Q psy5756         171 GEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGL  215 (360)
Q Consensus       171 ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL  215 (360)
                                    +.+++||.|.++|  ||||.|++.||+++||
T Consensus        85 --------------I~~vvfDR~g~~Y--hGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          85 --------------IKDVSFDRSGFQY--HGRVQALADAAREAGL  113 (113)
T ss_dssp             --------------CCCCCCBCCSCCS--SSHHHHHHHHHHHHTC
T ss_pred             --------------CCEEEECCCCCcc--chHHHHHHHHHHHcCC
Confidence                          7789999999999  9999999999999997

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=8.3e-23  Score=162.90  Aligned_cols=86  Identities=29%  Similarity=0.223  Sum_probs=79.5

Q ss_pred             cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756          92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG  171 (360)
Q Consensus        92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g  171 (360)
                      ||||+|++||+||||||||+  .++.||+|+||.+++..     .+|+++|+.+|.+||++|+++        |      
T Consensus         1 R~RL~V~rSnk~iyaQiIDd--~~~~tl~s~St~~k~~k-----~~~~~~A~~vG~~la~~ak~~--------g------   59 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALAL--------G------   59 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEET--TTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHHHHHHHHT--------S------
T ss_pred             CcEEEEEEcCCeEEEEEEEc--CCCeEEEEEeccchhhc-----CCCHHHHHHHHHHHHHHHHHC--------C------
Confidence            69999999999999999997  58999999999998753     369999999999999999998        4      


Q ss_pred             cceeecccCCCCCceEEEEeecccccccCceeEEeecccccc
Q psy5756         172 EEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDG  213 (360)
Q Consensus       172 e~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDg  213 (360)
                                   +.+++||+|.++|  ||||.|.+.+|++|
T Consensus        60 -------------I~~v~FDR~g~~Y--HGrvka~Ad~~Reg   86 (86)
T d2j01s1          60 -------------IKQVAFDRGPYKY--HGRVKALAEGAREG   86 (86)
T ss_dssp             -------------CCCCBCCCSTTCS--SSSCCCCSSCTTCC
T ss_pred             -------------CCEEEEeCCCCcc--ccHHHHHHHHHhCC
Confidence                         7789999999999  99999999999987

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.82  E-value=3.1e-23  Score=170.01  Aligned_cols=88  Identities=26%  Similarity=0.254  Sum_probs=80.5

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      +.+|||+|++||+|||||||||  +++.|||||||.+++.      .+|.++|..+|.+||++|+++        |    
T Consensus        17 ~~rpRL~V~rSnkhiyaQiIDd--~~~~tl~s~St~~~~~------~~~~~~a~~vG~~ia~~a~~k--------g----   76 (104)
T d2zjrl1          17 SGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAALKS------GNKTDTAAAVGKALAAAAAEK--------G----   76 (104)
T ss_dssp             TCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSCCT------TCSSSSHHHHHHHHHHHHHTT--------C----
T ss_pred             CCCcEEEEEEccCeeEEEEEec--CCCeEEEeeccccccc------cchhhHHHHHHHHHHHHHHHC--------C----
Confidence            4579999999999999999997  5999999999998753      358999999999999999998        4    


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccc
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGG  214 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgG  214 (360)
                                     +.+++||.|.++|  ||||.|.+.||+++|
T Consensus        77 ---------------i~~v~FDR~g~~Y--HGrvka~ad~~R~~G  104 (104)
T d2zjrl1          77 ---------------IKQVVFDRGSYKY--HGRVKALADAAREGG  104 (104)
T ss_dssp             ---------------CCCCEECCCSSCS--CSHHHHHHHHHHHHC
T ss_pred             ---------------CCEEEECCCCCcc--hhHHHHHHHHHHhCC
Confidence                           7789999999999  999999999999987

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=92.34  E-value=0.29  Score=39.00  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756          90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV  169 (360)
Q Consensus        90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev  169 (360)
                      -+.-.+-|+-|.+++++.+.|.  .| .+|+.+|+--+...|-+  -....||+.++..+++++++. |+..        
T Consensus         4 ~~~GivhI~~t~NNT~itlTD~--~G-n~i~~~S~G~~gfkg~r--k~t~~Aa~~~a~~~~~k~~~~-g~~~--------   69 (119)
T d2uubk1           4 VASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY-GMQS--------   69 (119)
T ss_dssp             CSEEEEEEEECSSCEEEEEECT--TS-CEEEEEETTTSSCCSGG--GGSHHHHHHHHHHHHHHHHTT-TCCE--------
T ss_pred             ccccEEEEEeccCCEEEEEECC--CC-CEEEEEecccceecccc--ccchhHHHHHHHHHHHHHHHc-CCcE--------
Confidence            4556888999999999999985  35 67888888666433322  356778899999999999875 3211        


Q ss_pred             cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756         170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI---------PHSVKRFPG  226 (360)
Q Consensus       170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I---------PHsekrfPg  226 (360)
                                      ..+++ .|+-    .+| .+|+++....||.|         ||+--|-|.
T Consensus        70 ----------------v~v~~-kG~G----~gR-~~~ik~l~~~g~kI~~I~D~T~iphnGcRp~K  113 (119)
T d2uubk1          70 ----------------VDVIV-RGTG----AGR-EQAIRALQASGLQVKSIVDDTPVPHNGCRPKK  113 (119)
T ss_dssp             ----------------EEEEE-ECCC----TTH-HHHHHHHHTSSSEEEECEECCCCCSSCSCCCG
T ss_pred             ----------------EEEEE-EcCC----CCh-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Confidence                            11223 2321    233 57888888888875         887666553

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=86.64  E-value=1.2  Score=35.27  Aligned_cols=100  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             CcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q psy5756          91 PKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVT  170 (360)
Q Consensus        91 pKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~  170 (360)
                      +.--+-|+-|.+++++.+.|.   .+.+++.+|+--+...|-+  .....||+.++..+++++++. |+.          
T Consensus         5 ~~Gi~hI~~t~NNTiitlTD~---~G~~~~~~S~G~~gfkg~~--K~t~~Aa~~~a~~~~~~~~~~-gi~----------   68 (117)
T d2qalk1           5 SDGVAHIHASFNNTIVTITDR---QGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY-GIK----------   68 (117)
T ss_dssp             CEEEEEEECCSSCCEEEEEET---TSCEEEEEETTTSSCCHHH--HTSHHHHHHHHHHHHHHHGGG-TCC----------
T ss_pred             cceEEEEEecCCCEEEEEECC---CCCEEEEEecccccccccc--ccchHHHHHHHHHHHHHHHHc-CCc----------
Confidence            344677899999999999884   4556766676555433322  245678999999999999875 331          


Q ss_pred             ccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756         171 GEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI---------PHSVKRFPG  226 (360)
Q Consensus       171 ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I---------PHsekrfPg  226 (360)
                                    ...+++ .|+-   . +| .+|++|...+||.|         ||+--|-|.
T Consensus        69 --------------~v~V~~-kG~G---~-GR-~~air~l~~~gl~I~~I~D~TpiphnGcRp~K  113 (117)
T d2qalk1          69 --------------NLEVMV-KGPG---P-GR-ESTIRALNAAGFRITNITDVTPIPHNGCRPPK  113 (117)
T ss_dssp             --------------EEEEEE-ECCS---T-TT-THHHHHHHHTTCEEEEEEECCCCCSSCSCCCC
T ss_pred             --------------EEEEEE-eCCC---C-ch-HHHHHHHHhCCCEEEEEEECCCCCCCCCCCCC
Confidence                          122333 2321   1 23 47899999999865         887766654