Psyllid ID: psy5774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MSNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVVNANKRGDSKTSIKETNPFERKPNGNYFNSKDVSDTQVKRKTNMTRQYNKISTTTITRTEIIQTFNKDELEEFDGKVANTREAEKNNPNKRITNDF
Secondary Structure (PSIPRED)
cccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccHEEEEEHccHHHHHHHHHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHccccEcccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MSNEIVMEVGKHPRVLVRKIFTNTRERWRQQnvsgafgelrrlvpthppdkklsknEILRMSIRYIRLLNGVLEWQKqnennynnnnttdinannniitnnrDFVVNankrgdsktsiketnpferkpngnyfnskdvsdtqvkrktnmtrqynkisTTTITRTEIIQTFNKDELEEFDGKVANTreaeknnpnkritndf
Flexible Loop (DISEMBL)
msneivmevgkhprvlVRKIFtntrerwrqqnvsgafgelrrlvpthppdkklskneiLRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVVNankrgdsktsiketnpferkpngnyfnskdvsdtqvkrktnmtrqynkistttitrteIIQTfnkdeleefdgkvantreaeknnpnkritndf
Low Complexity Region (SEG)
MSNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQnennynnnnttdinannniitnnRDFVVNANKRGDSKTSIKETNPFERKPNGNYFNSKDVSDTQVKRKTNMTRQYNKistttitrteiiqtFNKDELEEFDGKVANTREAEKNNPNKRITNDF
Disordered region (IsUnstruct)
*******EVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLV***********NEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVV************************************************KISTTTITRTEIIQTFN******************************
Disordered Region (DISOPRED)
**************************RWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGV*********************************************************************************************************************************
Disordered Region (DISEMBL)
MSNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVVNANKRGDSKTSIKETNPFERKPNGNYFNSKDVSDTQVKRKTNMTRQYNKISTTTITRTEIIQTFNKDELEEFDGKVANTREAEKNNPNKRITNDF
Disordered Region (DISPRO)
******M*VGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK**********************************************************************************TITRTEIIQTFNKDELEEFDGKVANTREAEK***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVVNANKRGDSKTSIKETNPFERKPNGNYFNSKDVSDTQVKRKTNMTRQYNKISTTTITRTEIIQTFNKDELEEFDGKVANTREAEKNNPNKRITNDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
O73823	394	T-cell acute lymphocytic	N/A	N/A	0.412	0.210	0.595	6e-24
Q90YI8	371	T-cell acute lymphocytic	N/A	N/A	0.716	0.388	0.382	8e-23
P24899	311	T-cell acute lymphocytic	yes	N/A	0.427	0.276	0.542	6e-22
P17542	331	T-cell acute lymphocytic	yes	N/A	0.353	0.214	0.648	1e-21
O93507	324	T-cell acute lymphocytic	no	N/A	0.343	0.212	0.642	1e-21
P22091	329	T-cell acute lymphocytic	yes	N/A	0.353	0.215	0.648	2e-21
P12980	280	Protein lyl-1 OS=Homo sap	no	N/A	0.328	0.235	0.606	4e-20
P27792	278	Protein lyl-1 OS=Mus musc	no	N/A	0.333	0.241	0.582	1e-19
Q66HH3	278	Protein lyl-1 OS=Rattus n	no	N/A	0.333	0.241	0.582	2e-19
Q16559	108	T-cell acute lymphocytic	no	N/A	0.373	0.694	0.566	3e-19

>sp|O73823|TAL1_XENLA T-cell acute lymphocytic leukemia protein 1 OS=Xenopus laevis GN=tal1 PE=2 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 4   EIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSI 63
           E+ +  G  P+V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR+++
Sbjct: 250 EVEISEGPQPKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAM 308

Query: 64  RYIRLLNGVLEWQKQNENNYNNNN 87
           +YI  L  +L+ Q++  N  N  N
Sbjct: 309 KYINFLAKLLDDQEEEGNQRNKGN 332

Transcription factor that acts synergistically with lmo2 and gata1 to specify embryonic dorsal mesoderm to a hematopoietic fate.
Xenopus laevis (taxid: 8355)

>sp|Q90YI8|TAL1_TAKRU T-cell acute lymphocytic leukemia protein 1 OS=Takifugu rubripes GN=tal1 PE=2 SV=1

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 5/149 (3%)

Query: 16  LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75
           +VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++YI  L+ +LE 
Sbjct: 203 IVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYISFLSNLLED 262

Query: 76  QKQNENNYNNNNTTDINANNNIITNNRDFVVNANKRGDSKTSIKETNPFERKPNGNYFNS 135
           Q   +   N ++TTD      ++    +         D    +   +  E    G+   S
Sbjct: 263 Q---DGGRNVSSTTD--GETGLMVGAHEVGPQGGPHQDRVVGLARDDIMETMSPGSSCGS 317

Query: 136 KDVSDTQVKRKTNMTRQYNKISTTTITRT 164
               D     ++ M  Q +  +  T+T +
Sbjct: 318 LPDGDADGSPESFMEDQDSPPAPRTLTAS 346

Transcription factor that plays a pivotal role in hemopoietic and endothelial development.

Takifugu rubripes (taxid: 31033)

>sp|P24899|TAL1_CHICK T-cell acute lymphocytic leukemia protein 1 homolog OS=Gallus gallus GN=TAL1 PE=2 SV=1

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 8/94 (8%)

Query: 7   MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
           ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct: 168 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 226

Query: 65  YIRLLNGVLEWQKQNENNYNNNNTTDINANNNII 98
           YI  L  +L     N+     N    +N ++ I+
Sbjct: 227 YINFLAKLL-----NDQEEEGNQRGKVNKDSGIV 255

Implicated in the genesis of hemopoietic malignancies. It may play an important role in hemopoietic differentiation.

Gallus gallus (taxid: 9031)

>sp|P17542|TAL1_HUMAN T-cell acute lymphocytic leukemia protein 1 OS=Homo sapiens GN=TAL1 PE=1 SV=2

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 62/74 (83%), Gaps = 3/74 (4%)

Query: 7   MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
           ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct: 176 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query: 65  YIRLLNGVLEWQKQ 78
           YI  L  +L  Q++
Sbjct: 235 YINFLAKLLNDQEE 248

Implicated in the genesis of hemopoietic malignancies. It may play an important role in hemopoietic differentiation. Serves as a positive regulator of erythroid differentiation.

Homo sapiens (taxid: 9606)

>sp|O93507|TAL1_DANRE T-cell acute lymphocytic leukemia protein 1 homolog OS=Danio rerio GN=tal1 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 4   EIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSI 63
           E+ +  G  P++ VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR+++
Sbjct: 173 EVEINDGSQPKI-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAM 231

Query: 64  RYIRLLNGVL 73
           +YI  L  +L
Sbjct: 232 KYINFLAKLL 241

Transcription factor that plays a pivotal role in hemopoietic and endothelial development, acting synergistically with lmo2 and downstream of clo. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hemopoietic induction cues such as gata1, tal1/scl-lmo2-induced hemangioblasts differentiate into endothelial cells. Isoform alpha and isoform beta are redundant for the initiation of primitive hemopoiesis but have distinct roles in the regulation of primitive erythroid differentiation and definitive hemopoietic stem cell specification, most likely due to differences in expression levels. Specification of definitive hemopoietic stem cells requires isoform beta. DNA binding is required for erythroid maturation, but not for its other hemopoietic functions. Endothelial roles include development of the dorsal aorta, the site of definitive hemopoiesis in the embryo. Required for angiogenesis but not angioblast specification. Has an additional role in endocardium formation during heart development. May play a role in central nervous system development.

Danio rerio (taxid: 7955)

>sp|P22091|TAL1_MOUSE T-cell acute lymphocytic leukemia protein 1 homolog OS=Mus musculus GN=Tal1 PE=1 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 62/74 (83%), Gaps = 3/74 (4%)

Query: 7   MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
           ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct: 176 MEISDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query: 65  YIRLLNGVLEWQKQ 78
           YI  L  +L  Q++
Sbjct: 235 YINFLAKLLNDQEE 248

Implicated in the genesis of hemopoietic malignancies. It may play an important role in hemopoietic differentiation. Serves as a positive regulator of erythroid differentiation.

Mus musculus (taxid: 10090)

>sp|P12980|LYL1_HUMAN Protein lyl-1 OS=Homo sapiens GN=LYL1 PE=2 SV=3

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 56/66 (84%)

Query: 4   EIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSI 63
           E+ +  G  P+ + R++FTN+RERWRQQNV+GAF ELR+L+PTHPPD+KLSKNE+LR+++
Sbjct: 137 ELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAM 196

Query: 64  RYIRLL 69
           +YI  L
Sbjct: 197 KYIGFL 202

Homo sapiens (taxid: 9606)

>sp|P27792|LYL1_MOUSE Protein lyl-1 OS=Mus musculus GN=Lyl1 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 57/67 (85%)

Query: 3   NEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMS 62
           +E+ +  G  P+ + R++FTN+RERWRQQ+V+GAF ELR+L+PTHPPD+KLSKNE+LR++
Sbjct: 135 SELDLADGHQPQKVARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPDRKLSKNEVLRLA 194

Query: 63  IRYIRLL 69
           ++YI  L
Sbjct: 195 MKYIGFL 201

Mus musculus (taxid: 10090)

>sp|Q66HH3|LYL1_RAT Protein lyl-1 OS=Rattus norvegicus GN=Lyl1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 56/67 (83%)

Query: 3   NEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMS 62
            E+ +  G  P+ + R++FTN+RERWRQQ+V+GAF ELR+L+PTHPPD+KLSKNE+LR++
Sbjct: 135 GELDLVDGHQPQKVARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPDRKLSKNEVLRLA 194

Query: 63  IRYIRLL 69
           ++YI  L
Sbjct: 195 MKYIGFL 201

Rattus norvegicus (taxid: 10116)

>sp|Q16559|TAL2_HUMAN T-cell acute lymphocytic leukemia protein 2 OS=Homo sapiens GN=TAL2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 8/83 (9%)

Query: 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75
          + RKIFTNTRERWRQQNV+ AF +LR+L+PTHPPDKKLSKNE LR+++RYI  L  VL  
Sbjct: 1  MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE 60

Query: 76 QKQNENNYNNNNTTDINANNNII 98
          Q   +        T + A  NI+
Sbjct: 61 QSLQQ--------TGVAAQGNIL 75

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
350400572	385	PREDICTED: hypothetical protein LOC10074	0.422	0.220	0.705	1e-28
340713891	385	PREDICTED: hypothetical protein LOC10064	0.422	0.220	0.705	1e-28
312378666	349	hypothetical protein AND_09729 [Anophele	0.338	0.194	0.838	1e-27
157126242	381	helix-loop-helix protein hen [Aedes aegy	0.398	0.209	0.737	1e-27
158291998	407	AGAP004299-PA [Anopheles gambiae str. PE	0.338	0.167	0.823	1e-27
170058267	370	helix-loop-helix protein hen [Culex quin	0.323	0.175	0.861	4e-27
322783215	1502	hypothetical protein SINV_05567 [Solenop	0.422	0.056	0.670	8e-27
194763949	375	GF21374 [Drosophila ananassae] gi|190619	0.467	0.250	0.625	8e-27
332028663	375	T-cell acute lymphocytic leukemia protei	0.328	0.176	0.833	9e-27
328780435	386	PREDICTED: hypothetical protein LOC72512	0.402	0.209	0.691	2e-26

>gi|350400572|ref|XP_003485885.1| PREDICTED: hypothetical protein LOC100749898 [Bombus impatiens]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%)

Query: 17  VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
           VRK+FTN+RERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL+ VLEWQ
Sbjct: 99  VRKLFTNSRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLSNVLEWQ 158

Query: 77  KQNENNYNNNNTTDINANNNIITNN 101
           K  E N    +   I    N+ T+N
Sbjct: 159 KAQERNEVTQHEVRIKCEPNLATHN 183

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713891|ref|XP_003395468.1| PREDICTED: hypothetical protein LOC100649767 [Bombus terrestris]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%)

Query: 17  VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
           VRK+FTN+RERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL+ VLEWQ
Sbjct: 99  VRKLFTNSRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLSNVLEWQ 158

Query: 77  KQNENNYNNNNTTDINANNNIITNN 101
           K  E N    +   I    N+ T+N
Sbjct: 159 KAQERNEVTQHEVRIKCEPNLATHN 183

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378666|gb|EFR25177.1| hypothetical protein AND_09729 [Anopheles darlingi]

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 15  VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74
            +VRK+FTNTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL+ VLE
Sbjct: 78  AVVRKMFTNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLSNVLE 137

Query: 75  WQKQNENN 82
           WQK+ E N
Sbjct: 138 WQKKQEAN 145

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126242|ref|XP_001660866.1| helix-loop-helix protein hen [Aedes aegypti] gi|108873337|gb|EAT37562.1| AAEL010472-PA [Aedes aegypti]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 67/80 (83%)

Query: 3   NEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMS 62
           N +  ++G     +VRK+FTNTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+
Sbjct: 120 NLVGTKLGIGSGTVVRKMFTNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMA 179

Query: 63  IRYIRLLNGVLEWQKQNENN 82
           IRYIRLL  VLEWQK+ E N
Sbjct: 180 IRYIRLLTNVLEWQKKQEAN 199

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158291998|ref|XP_562042.3| AGAP004299-PA [Anopheles gambiae str. PEST] gi|157017223|gb|EAL40505.3| AGAP004299-PA [Anopheles gambiae str. PEST]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 62/68 (91%)

Query: 15  VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74
            +VRK+F+NTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL  VLE
Sbjct: 148 AVVRKMFSNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLTNVLE 207

Query: 75  WQKQNENN 82
           WQK+ E N
Sbjct: 208 WQKKQEAN 215

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058267|ref|XP_001864847.1| helix-loop-helix protein hen [Culex quinquefasciatus] gi|167877427|gb|EDS40810.1| helix-loop-helix protein hen [Culex quinquefasciatus]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 62/65 (95%)

Query: 16  LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75
           +VRK+FTNTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL+ VLEW
Sbjct: 111 VVRKMFTNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLSNVLEW 170

Query: 76  QKQNE 80
           QK+ E
Sbjct: 171 QKKQE 175

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783215|gb|EFZ10801.1| hypothetical protein SINV_05567 [Solenopsis invicta]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 69/88 (78%), Gaps = 3/88 (3%)

Query: 13   PRVL---VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
            PRV    VRK+FTN+RERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL
Sbjct: 1219 PRVGTLGVRKLFTNSRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLL 1278

Query: 70   NGVLEWQKQNENNYNNNNTTDINANNNI 97
            + VLEWQK  + N    +   I   +++
Sbjct: 1279 SNVLEWQKSQDRNGMQQHDIRIKCESHL 1306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763949|ref|XP_001964094.1| GF21374 [Drosophila ananassae] gi|190619019|gb|EDV34543.1| GF21374 [Drosophila ananassae]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 2/96 (2%)

Query: 18  RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK 77
           RK+FTNTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILR +I+YI+LL G+LEWQ+
Sbjct: 172 RKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRSAIKYIKLLTGILEWQQ 231

Query: 78  QN--ENNYNNNNTTDINANNNIITNNRDFVVNANKR 111
           +   E N N+N T + +A +  I ++ D + N + R
Sbjct: 232 RQNPEQNNNDNRTVNGHALDTCIPDSGDSMDNPSVR 267

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028663|gb|EGI68697.1| T-cell acute lymphocytic leukemia protein 1 [Acromyrmex echinatior]

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 61/66 (92%)

Query: 17  VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
           VRK+FTN+RERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+IRYIRLL+ VLEWQ
Sbjct: 99  VRKLFTNSRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIRYIRLLSNVLEWQ 158

Query: 77  KQNENN 82
           K  + N
Sbjct: 159 KSQDRN 164

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780435|ref|XP_001121011.2| PREDICTED: hypothetical protein LOC725127 [Apis mellifera]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 65/81 (80%)

Query: 17  VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
           VRK+FTN+RERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILRM+I+YI+LL+ VLEWQ
Sbjct: 101 VRKLFTNSRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRMAIKYIQLLSNVLEWQ 160

Query: 77  KQNENNYNNNNTTDINANNNI 97
           K  E N    +   I    N+
Sbjct: 161 KAQERNEGMQHEVRIKCEPNL 181

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
FB|FBgn0011276	376	HLH3B "Helix loop helix protei	0.308	0.164	0.822	5.9e-25
UNIPROTKB|O73823	394	tal1 "T-cell acute lymphocytic	0.368	0.187	0.626	1.7e-21
UNIPROTKB|P24899	311	TAL1 "T-cell acute lymphocytic	0.353	0.228	0.648	3.9e-21
UNIPROTKB|E1BAU0	328	TAL1 "Uncharacterized protein"	0.353	0.216	0.648	3.9e-21
UNIPROTKB|E2RAZ1	339	TAL1 "Uncharacterized protein"	0.353	0.209	0.648	3.9e-21
UNIPROTKB|E7EVM2	333	TAL1 "T-cell acute lymphocytic	0.353	0.213	0.648	3.9e-21
UNIPROTKB|P17542	331	TAL1 "T-cell acute lymphocytic	0.353	0.214	0.648	3.9e-21
UNIPROTKB|F1S3X6	331	TAL1 "Uncharacterized protein"	0.353	0.214	0.648	3.9e-21
MGI|MGI:98480	329	Tal1 "T cell acute lymphocytic	0.353	0.215	0.648	3.9e-21
RGD|1306748	329	Tal1 "T-cell acute lymphocytic	0.353	0.215	0.648	3.9e-21

FB|FBgn0011276 HLH3B "Helix loop helix protein 3B" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query:    17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
             VRK+FTNTRERWRQQNVSGAF ELR+LVPTHPPDKKLSKNEILR +I+YI+LL G+LEWQ
Sbjct:   165 VRKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKKLSKNEILRSAIKYIKLLTGILEWQ 224

Query:    77 KQ 78
             ++
Sbjct:   225 QR 226

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|O73823 tal1 "T-cell acute lymphocytic leukemia protein 1" [Xenopus laevis (taxid:8355)]

 Score = 253 (94.1 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 47/75 (62%), Positives = 63/75 (84%)

Query:     4 EIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSI 63
             E+ +  G  P+V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR+++
Sbjct:   250 EVEISEGPQPKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAM 308

Query:    64 RYIRLLNGVLEWQKQ 78
             +YI  L  +L+ Q++
Sbjct:   309 KYINFLAKLLDDQEE 323

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=ISS

GO:0030097 "hemopoiesis" evidence=IMP

GO:0030218 "erythrocyte differentiation" evidence=IGI

UNIPROTKB|P24899 TAL1 "T-cell acute lymphocytic leukemia protein 1 homolog" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   168 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 226

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   227 YINFLAKLLNDQEE 240

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|E1BAU0 TAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   173 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 231

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   232 YINFLAKLLNDQEE 245

GO:2000036 "regulation of stem cell maintenance" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:0060375 "regulation of mast cell differentiation" evidence=IEA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA

GO:0060217 "hemangioblast cell differentiation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0060018 "astrocyte fate commitment" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045799 "positive regulation of chromatin assembly or disassembly" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0035855 "megakaryocyte development" evidence=IEA

GO:0033193 "Lsd1/2 complex" evidence=IEA

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA

GO:0030221 "basophil differentiation" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0021527 "spinal cord association neuron differentiation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

UNIPROTKB|E2RAZ1 TAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   184 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 242

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   243 YINFLAKLLNDQEE 256

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E7EVM2 TAL1 "T-cell acute lymphocytic leukemia protein 1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   178 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 236

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   237 YINFLAKLLNDQEE 250

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|P17542 TAL1 "T-cell acute lymphocytic leukemia protein 1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   176 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   235 YINFLAKLLNDQEE 248

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0021527 "spinal cord association neuron differentiation" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0035855 "megakaryocyte development" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0060018 "astrocyte fate commitment" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0060217 "hemangioblast cell differentiation" evidence=IEA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA

GO:0060375 "regulation of mast cell differentiation" evidence=IEA

GO:2000036 "regulation of stem cell maintenance" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0035162 "embryonic hemopoiesis" evidence=ISS

GO:0003682 "chromatin binding" evidence=IDA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0070888 "E-box binding" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0030218 "erythrocyte differentiation" evidence=IEP;IMP

GO:0030219 "megakaryocyte differentiation" evidence=IEP

GO:0030221 "basophil differentiation" evidence=IEP

GO:0045799 "positive regulation of chromatin assembly or disassembly" evidence=IMP

GO:0031334 "positive regulation of protein complex assembly" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0030097 "hemopoiesis" evidence=ISS

GO:0045165 "cell fate commitment" evidence=ISS

GO:0033193 "Lsd1/2 complex" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0005667 "transcription factor complex" evidence=IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

UNIPROTKB|F1S3X6 TAL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   176 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   235 YINFLAKLLNDQEE 248

GO:2000036 "regulation of stem cell maintenance" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:0060375 "regulation of mast cell differentiation" evidence=IEA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA

GO:0060217 "hemangioblast cell differentiation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0060018 "astrocyte fate commitment" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045799 "positive regulation of chromatin assembly or disassembly" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0035855 "megakaryocyte development" evidence=IEA

GO:0033193 "Lsd1/2 complex" evidence=IEA

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA

GO:0030221 "basophil differentiation" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0021527 "spinal cord association neuron differentiation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

MGI|MGI:98480 Tal1 "T cell acute lymphocytic leukemia 1" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   176 MEISDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   235 YINFLAKLLNDQEE 248

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001525 "angiogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=ISO;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=ISO;IDA;IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0021527 "spinal cord association neuron differentiation" evidence=IGI

GO:0030097 "hemopoiesis" evidence=IDA

GO:0030099 "myeloid cell differentiation" evidence=IDA;IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030218 "erythrocyte differentiation" evidence=ISO;IMP;IDA

GO:0030219 "megakaryocyte differentiation" evidence=IMP

GO:0030220 "platelet formation" evidence=IMP

GO:0031334 "positive regulation of protein complex assembly" evidence=ISO

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0035855 "megakaryocyte development" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0043249 "erythrocyte maturation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045637 "regulation of myeloid cell differentiation" evidence=IMP

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISO;IDA

GO:0045799 "positive regulation of chromatin assembly or disassembly" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048699 "generation of neurons" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=ISO

GO:0060018 "astrocyte fate commitment" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0060217 "hemangioblast cell differentiation" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

GO:0060375 "regulation of mast cell differentiation" evidence=IMP

GO:0070888 "E-box binding" evidence=ISO;IDA

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

RGD|1306748 Tal1 "T-cell acute lymphocytic leukemia 1" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query:     7 MEV--GKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIR 64
             ME+  G H +V VR+IFTN+RERWRQQNV+GAF ELR+L+PTHPPDKKLSKNEILR++++
Sbjct:   176 MEITDGPHTKV-VRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMK 234

Query:    65 YIRLLNGVLEWQKQ 78
             YI  L  +L  Q++
Sbjct:   235 YINFLAKLLNDQEE 248

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0021527 "spinal cord association neuron differentiation" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0030221 "basophil differentiation" evidence=IEA

GO:0031334 "positive regulation of protein complex assembly" evidence=IEA

GO:0033193 "Lsd1/2 complex" evidence=IEA

GO:0035855 "megakaryocyte development" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0045799 "positive regulation of chromatin assembly or disassembly" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0060018 "astrocyte fate commitment" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0060217 "hemangioblast cell differentiation" evidence=IEA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA

GO:0060375 "regulation of mast cell differentiation" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:2000036 "regulation of stem cell maintenance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P24899	TAL1_CHICK	No assigned EC number	0.5425	0.4278	0.2765	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
smart00353	53	smart00353, HLH, helix loop helix domain	2e-13
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-13
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-12

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 23 NTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74
          N RER R++ ++ AF ELR L+PT P +KKLSK EILR++I YI+ L   L+
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 61.3 bits (150), Expect = 3e-13
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
          R+   N RER R+  ++ AF ELR L+P  PP+KKLSK EILR++I YI+ L
Sbjct: 1  RRKAHNERERRRRDRINDAFEELRELLP-TPPNKKLSKAEILRLAIEYIKHL 51

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74
          R+   N RER R++ ++ AF ELR L+PT PP KKLSK EILR ++ YI+ L  +L+
Sbjct: 4  RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG4029|consensus	228		99.73
KOG3960|consensus	284		99.66
KOG3898|consensus	254		99.6
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.49
KOG4395|consensus	285		99.41
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.4
smart00353	53	HLH helix loop helix domain.	99.34
KOG4447|consensus	173		99.16
KOG0561|consensus	373		98.9
KOG3910|consensus	632		98.83
KOG1319|consensus	229		98.18
KOG1318|consensus	411		97.95
KOG2483|consensus	232		97.43
KOG4304|consensus	250		96.93
KOG3561|consensus	803		96.77
KOG4447|consensus	173		96.61
KOG2588|consensus	953		95.89
PLN03217	93	transcription factor ATBS1; Provisional	93.21
KOG3558|consensus	768		81.87

>KOG4029|consensus

Probab=99.73  E-value=3.8e-18  Score=145.73  Aligned_cols=66  Identities=47%  Similarity=0.648  Sum_probs=62.2

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIRLLNGVLEWQKQNE   80 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~   80 (201)
                      ...+|.++|+|||.||+.||.||+.||.+||..+. ++|||||+|||+||.||.+|+++|+.+....
T Consensus       106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            44678899999999999999999999999999998 9999999999999999999999999988775

>KOG3960|consensus

Probab=99.66  E-value=8.9e-16  Score=135.85  Aligned_cols=69  Identities=38%  Similarity=0.560  Sum_probs=62.4

Q ss_pred             CCccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy5774          12 HPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNEN   81 (201)
Q Consensus        12 ~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~   81 (201)
                      ..-.+.||.+|.+|||+|+++||+||+.|+++.-..| +++|.||||||.||.||..||.||++......
T Consensus       112 ks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  112 KSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            3446779999999999999999999999999998775 56999999999999999999999999887754

>KOG3898|consensus

Probab=99.60  E-value=9.9e-16  Score=134.44  Aligned_cols=66  Identities=33%  Similarity=0.438  Sum_probs=61.3

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE   80 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~   80 (201)
                      ...||+.+|+|||+|||+||+||+.||.+||+++.+.|||||+||++|.+||+.|+.++.......
T Consensus        69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~  134 (254)
T KOG3898|consen   69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL  134 (254)
T ss_pred             hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence            456899999999999999999999999999999999999999999999999999999988777653

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.49  E-value=6.5e-14  Score=95.29  Aligned_cols=53  Identities=42%  Similarity=0.676  Sum_probs=49.4

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTH--PPDKKLSKNEILRMSIRYIRLLN   70 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~--p~~kKLSKietLr~Ai~YI~~Lq   70 (201)
                      ||..+|.+||.|+..||.+|+.|+.+||..  ....++||++||+.||+||.+||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            578899999999999999999999999986  36788999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG4395|consensus

Probab=99.41  E-value=3.1e-13  Score=119.89  Aligned_cols=64  Identities=39%  Similarity=0.535  Sum_probs=60.0

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE   80 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~   80 (201)
                      .||.++|+|||+||..||.||++||.+||....+++|||.+||++|..||..|..+|.....+.
T Consensus       173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~~~  236 (285)
T KOG4395|consen  173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMSGL  236 (285)
T ss_pred             hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccccC
Confidence            5899999999999999999999999999999999999999999999999999999997666554

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.40  E-value=9.6e-13  Score=89.35  Aligned_cols=57  Identities=51%  Similarity=0.789  Sum_probs=53.4

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL   73 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL   73 (201)
                      .+|..+|.+||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..+
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            467789999999999999999999999999877889999999999999999999865

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.34  E-value=4.6e-12  Score=84.76  Aligned_cols=52  Identities=54%  Similarity=0.847  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774          23 NTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE   74 (201)
Q Consensus        23 N~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~   74 (201)
                      |.+||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999988778899999999999999999998764

>KOG4447|consensus

Probab=99.16  E-value=1.6e-11  Score=102.51  Aligned_cols=62  Identities=40%  Similarity=0.690  Sum_probs=57.1

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE   80 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~   80 (201)
                      +|..||.|||+|.++||+||..||+.+|..|.+ |||||.||++|..||.+|..+|.......
T Consensus        78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~l~~~  139 (173)
T KOG4447|consen   78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDLELD  139 (173)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccccccc
Confidence            688999999999999999999999999999877 99999999999999999999997764443

>KOG0561|consensus

Probab=98.90  E-value=1.1e-09  Score=99.90  Aligned_cols=57  Identities=37%  Similarity=0.592  Sum_probs=51.4

Q ss_pred             ccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5774          14 RVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNG   71 (201)
Q Consensus        14 ~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~   71 (201)
                      .++-||.-||-.||+||+.||.+|..||.+||.. .+.||||..||+...+||..|..
T Consensus        56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~-eGEKLSKAAILQQTa~yI~~Le~  112 (373)
T KOG0561|consen   56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRK-EGEKLSKAAILQQTADYIHQLEG  112 (373)
T ss_pred             HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHHh
Confidence            4556888899999999999999999999999998 45699999999999999988753

>KOG3910|consensus

Probab=98.83  E-value=2.5e-09  Score=102.43  Aligned_cols=73  Identities=29%  Similarity=0.347  Sum_probs=63.5

Q ss_pred             chhhhhhhCCCCccccchhhcchHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774           2 SNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVP-THPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN   79 (201)
Q Consensus         2 s~~~~~e~~k~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP-~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~   79 (201)
                      .+++.++++|     .||++.|+|||-|++.||+||.+|-+++- ++-.+|.-+|+-||..|+.-|..|++.+++-.-.
T Consensus       515 ~peqkaeREk-----ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLN  588 (632)
T KOG3910|consen  515 NPEQKAEREK-----ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLN  588 (632)
T ss_pred             ChhhhhhHHH-----HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCC
Confidence            4566777777     89999999999999999999999999876 4447899999999999999999999999875543

>KOG1319|consensus

Probab=98.18  E-value=2.1e-06  Score=74.37  Aligned_cols=64  Identities=30%  Similarity=0.408  Sum_probs=53.6

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLLNGVLEWQKQN   79 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~   79 (201)
                      -+||.++..-||.|...||.+|+.|+.+||..-    ...||||.-||+.+|+||.+|..-...++..
T Consensus        60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e  127 (229)
T KOG1319|consen   60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE  127 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777888899999999999999999999653    3469999999999999999998766555544

>KOG1318|consensus

Probab=97.95  E-value=1.3e-05  Score=75.65  Aligned_cols=62  Identities=32%  Similarity=0.408  Sum_probs=54.6

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      .++||..+|+=||+|+.+||..+..|..+||... .+-++.|--||..+++||..|++.++..
T Consensus       230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~  292 (411)
T KOG1318|consen  230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA  292 (411)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            4467777999999999999999999999999653 5678889999999999999999988743

>KOG2483|consensus

Probab=97.43  E-value=0.00033  Score=61.80  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      ..|..+|+=||+|...|-++|+.||..||..+..++=.-+.+|+.|..||..|+.....+
T Consensus        58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            468889999999999999999999999999876655558999999999999988766543

>KOG4304|consensus

Probab=96.93  E-value=0.00067  Score=60.21  Aligned_cols=58  Identities=26%  Similarity=0.411  Sum_probs=48.1

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHP-----PDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-----~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      |+...=.-||+|...||++++.||.+||...     ...||-|.|||.++++|.+.|+..-..
T Consensus        32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            4555667799999999999999999999543     237999999999999999999875443

>KOG3561|consensus

Probab=96.77  E-value=0.0024  Score=64.82  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=53.9

Q ss_pred             CCccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5774          12 HPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGV   72 (201)
Q Consensus        12 ~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~l   72 (201)
                      +...+..|..+|.-||+|+.++|.-+++|-.+||+.. -.+|+-|..|||+|+..|+.+..+
T Consensus        14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            3445567999999999999999999999999999765 578999999999999999888775

>KOG4447|consensus

Probab=96.61  E-value=0.00082  Score=56.73  Aligned_cols=56  Identities=27%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             cchhhcchH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774          17 VRKIFTNTR-ERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL   73 (201)
Q Consensus        17 ~RR~~aN~R-ER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL   73 (201)
                      ..+..++.| ||.|.+.+|++|.-|+.++|..|.+ +.+++.+|+.+..||..|.++-
T Consensus        20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~q   76 (173)
T KOG4447|consen   20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDELQ   76 (173)
T ss_pred             hhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHHH
Confidence            445566666 9999999999999999999999866 7899999999999999887743

>KOG2588|consensus

Probab=95.89  E-value=0.0053  Score=63.11  Aligned_cols=62  Identities=29%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN   79 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~   79 (201)
                      ..||.++|.=|++=+-+||+-..+||+.||..+  -||.|-.+||.||+||..|+......+..
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~--aKl~kSavLr~ai~~i~dl~~~nq~lk~~  335 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE--AKLNKSAVLRKAIDYIEDLQGYNQKLKLE  335 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccH--hhhhhhhhHHHHHHHHHHhhccccccchh
Confidence            367999999999999999999999999999874  48999999999999999999876655544

>PLN03217 transcription factor ATBS1; Provisional

Probab=93.21  E-value=0.19  Score=38.93  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          28 WRQQNVSGAFGELRRLVPTHP---PDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        28 ~R~~~IN~AF~~LR~~lP~~p---~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      ---.+||+-..+|+.+||...   ...|.|-..+|+.++.||..|..-++.-
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334789999999999999653   3457888899999999999887766543

>KOG3558|consensus

Probab=81.87  E-value=1.4  Score=44.98  Aligned_cols=83  Identities=27%  Similarity=0.378  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCccccccccccccCCC-c
Q psy5774          27 RWRQQNVSGAFGELRRLVPTHP--PDKKLSKNEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNR-D  103 (201)
Q Consensus        27 R~R~~~IN~AF~~LR~~lP~~p--~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~~~~s~~ts~~s~~~n~i~s~~-s  103 (201)
                      |.|+.+=|.-|.+|..+|| +|  -.-.|-|+.|+|+||.|.+ |.+++.....+...+...+  .....++-|.... .
T Consensus        55 RsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~~p~~e~~~~~--~e~~l~~~iLqsLDG  130 (768)
T KOG3558|consen   55 RSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGDPPRAEGEPEN--LEQHLGDHILQSLDG  130 (768)
T ss_pred             hhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCCcccccCCCcc--hhhhhhhhHHhhccc
Confidence            5678899999999999999 44  3568999999999999976 4555544433321111111  0111233333222 6


Q ss_pred             ccccccCCCC
Q psy5774         104 FVVNANKRGD  113 (201)
Q Consensus       104 ~~v~~~~~g~  113 (201)
                      |++..++.|+
T Consensus       131 FVm~l~~dG~  140 (768)
T KOG3558|consen  131 FVMALTQDGD  140 (768)
T ss_pred             eEEEEccCCC
Confidence            7777777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	3e-21
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	1e-07
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	6e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	5e-05
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	8e-05
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 81.9 bits (203), Expect = 3e-21
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74
          R++  N RER R   ++ A   LR++VP +   +KLSK E LR++  YI  L+ +L 
Sbjct: 2  RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 72.0 bits (177), Expect = 2e-17
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 7  MEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYI 66
          ME+ +      R+     RER R   V+ AF  L+R   ++ P+++L K EILR +IRYI
Sbjct: 1  MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYI 59

Query: 67 RLLNGVLE 74
            L  +L 
Sbjct: 60 EGLQALLR 67

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 63/231 (27%)

Query: 16  LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRM-SIRYIRLLNG--- 71
           ++ +++   R+R    N +  F   +  V    P  KL +  +L +   + + L++G   
Sbjct: 107 MMTRMYIEQRDR--LYNDNQVFA--KYNVSRLQPYLKL-RQALLELRPAKNV-LIDGVLG 160

Query: 72  ----VL--------EWQKQNEN-----NYNNNNTTD--INANNNIITNNRDFVVNANKRG 112
                +        + Q + +      N  N N+ +  +     ++        N   R 
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRS 217

Query: 113 DSKTSIK-ETNPFERKPNGNYFNSK----------DVSDTQV--------K-----RKTN 148
           D  ++IK   +  + +       SK          +V + +         K     R   
Sbjct: 218 DHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 149 MTRQYNKISTTTITRTEIIQTFNKDELEEFDGKVANT------REAEKNNP 193
           +T   +  +TT I+      T   DE++    K  +       RE    NP
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 23 NTRERWRQQNVSGAFGEL-RRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNEN 81
          N  ER R+++++ AF EL R        DK  +K  IL+ +++ I  L   +  +  N  
Sbjct: 10 NALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL 69

Query: 82 NYNNNN 87
          N+++++
Sbjct: 70 NHHHHH 75

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 68

 Score = 44.3 bits (104), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 30 QQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
            +++  +  LR LVP  P   +LS+ EIL+  I YI  L
Sbjct: 26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDL 65

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
          V++   N  ER R+  +  +F  LR  +P    ++K  K  IL+ +  YI  +
Sbjct: 5  VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 26  ERWRQQNVSGAFGELRRLVPTHPPDK-KLSKNEILRMSIRYIRLLNGVLEWQKQNENNYN 84
           E+ R+  ++    EL  LVPT      KL K  +LRM++++++ L G        E NY 
Sbjct: 21  EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT--EANYK 78

Query: 85  NNNTTDINANNNIITNNRDFVV 106
               +D    + I+     F+ 
Sbjct: 79  PTFLSDDELKHLILRAADGFLF 100

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTH---PPDKKLSKNEILRMSIRYIRLL 69
          R+   N  ER R+  ++    +L +++P           SK  IL  +  YI+ L
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.89
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.86
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.82
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.81
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.67
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.56
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.52
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.52
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.45
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.33
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.33
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.21
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.16
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.09
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.05
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.54
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.23
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.64
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	92.04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.89  E-value=1.1e-23  Score=148.13  Aligned_cols=59  Identities=37%  Similarity=0.552  Sum_probs=56.6

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      .||.+||+|||.||+.||.||+.||.+||..+.++|||||+||+.||+||.+|+++|+.
T Consensus         1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            37889999999999999999999999999999999999999999999999999999975

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.86  E-value=2.5e-22  Score=144.55  Aligned_cols=62  Identities=37%  Similarity=0.508  Sum_probs=57.0

Q ss_pred             CccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          13 PRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        13 p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      .....+|.+||+|||.||+.||+||+.||.+||..| ++|||||+||+.||+||.+|+++|++
T Consensus         7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~   68 (68)
T 1mdy_A            7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            345678999999999999999999999999999875 78999999999999999999999863

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=143.40  Aligned_cols=66  Identities=29%  Similarity=0.332  Sum_probs=54.6

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNEN   81 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~   81 (201)
                      ..|+..+..+||.||+.||+||+.||++||..|.++|||||||||+||+||.+|+++|++.+....
T Consensus        23 i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~   88 (97)
T 4aya_A           23 ISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSF   88 (97)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            345555567789999999999999999999999999999999999999999999999998877653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.81  E-value=4.5e-21  Score=138.74  Aligned_cols=53  Identities=30%  Similarity=0.330  Sum_probs=50.5

Q ss_pred             hhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5774          19 KIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNG   71 (201)
Q Consensus        19 R~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~   71 (201)
                      +..||+|||.||+.||.||+.||++||..|.++|||||||||+||+||.+||.
T Consensus        15 ~~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           15 KGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            34789999999999999999999999999999999999999999999999984

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.67  E-value=4e-17  Score=119.52  Aligned_cols=64  Identities=27%  Similarity=0.315  Sum_probs=53.1

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVP-THPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN   79 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP-~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~   79 (201)
                      ..||..+|++||.|+..||.+|+.||.+|| ..+.++.+||++||+.||+||..|+..|++....
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~   67 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN   67 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999999999999999 4667777799999999999999999999876654

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=5e-15  Score=107.94  Aligned_cols=60  Identities=25%  Similarity=0.369  Sum_probs=54.7

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      ..+|..||++||.|+..||.+|+.|+.+||..+. .|+||++||+.|++||.+|+..++..
T Consensus        10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A           10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999998764 58999999999999999999887654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.52  E-value=1.6e-14  Score=107.86  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      .+|..+|+.||.|+..||.+|+.||.+||..+...|+||+.||+.||+||..|+.....
T Consensus         5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A            5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999998888999999999999999999987543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.52  E-value=1.6e-14  Score=105.55  Aligned_cols=57  Identities=26%  Similarity=0.415  Sum_probs=52.2

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      +|..+|.+||.|+..||.+|+.|+.+||..+ +.|+||++||+.|++||.+|+..++.
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~   58 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999876 45899999999999999999976654

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=1.3e-13  Score=101.53  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=52.9

Q ss_pred             hhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774          19 KIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE   74 (201)
Q Consensus        19 R~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~   74 (201)
                      |..+|+.||.|+..||.+|+.||.+||..+...|+||+.||+.|++||..|+.-..
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~   57 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999888999999999999999999998654

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.33  E-value=4.8e-13  Score=93.70  Aligned_cols=56  Identities=25%  Similarity=0.345  Sum_probs=51.0

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPD---KKLSKNEILRMSIRYIRLLNG   71 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~---kKLSKietLr~Ai~YI~~Lq~   71 (201)
                      ..+|..+|..||.|...||.+|..|+.+||.....   .|+||+.||..||+||..|+.
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999987643   589999999999999999986

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.33  E-value=2e-12  Score=95.01  Aligned_cols=60  Identities=27%  Similarity=0.334  Sum_probs=54.3

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      ...+|..+|..||.|+..||++|..|+.+||..  +.|++|+.||..||+||.+|+..+..-
T Consensus         3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L   62 (82)
T 1am9_A            3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            456889999999999999999999999999974  569999999999999999999887654

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.21  E-value=2.9e-12  Score=90.47  Aligned_cols=56  Identities=25%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLLNGVL   73 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL   73 (201)
                      ||..++.-||.|+..||.+|+.|+.+||...    ...++||.+||.+||+||..|++.+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            6788999999999999999999999999543    2579999999999999999998754

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.16  E-value=6.6e-11  Score=85.85  Aligned_cols=60  Identities=22%  Similarity=0.428  Sum_probs=53.5

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      .+.+|..+|..||+|...||..|..|+.+||.  ...|++|..||+.||+||..|+..+..-
T Consensus         5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B            5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            34688899999999999999999999999994  3569999999999999999999987543

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.09  E-value=2e-10  Score=89.69  Aligned_cols=64  Identities=33%  Similarity=0.427  Sum_probs=50.0

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGVLEWQKQ   78 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~   78 (201)
                      ...+|..+|.-||.|...||..|..|+.+||... .+.|++|+.||..||+||.+|+..+.....
T Consensus        24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~   88 (118)
T 4ati_A           24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   88 (118)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888999999999999999999999999764 467999999999999999999987765543

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=84.94  Aligned_cols=57  Identities=28%  Similarity=0.420  Sum_probs=50.7

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTH-PPDKKLSKNEILRMSIRYIRLLNGV   72 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~l   72 (201)
                      ..+|..++.-||+|...||.+|+.|+.+||.. ....||+|+.||+.||+||..|+..
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence            35788899999999999999999999999954 3467999999999999999998753

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.54  E-value=1.1e-07  Score=83.28  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=44.1

Q ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774          15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE   74 (201)
Q Consensus        15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~   74 (201)
                      ...+|..+|..||+|+.+||..|..|+.+||  ....||.|+.||++||.||..|+.+-.
T Consensus         9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~   66 (361)
T 4f3l_A            9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA   66 (361)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence            3467888999999999999999999999999  345799999999999999999987653

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.23  E-value=6.1e-07  Score=79.75  Aligned_cols=58  Identities=28%  Similarity=0.403  Sum_probs=49.9

Q ss_pred             CccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy5774          13 PRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLN   70 (201)
Q Consensus        13 p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq   70 (201)
                      +..+.+|..+|.-||+|+.+||..|..|+.+||... ...||.|+.||++||.||..|+
T Consensus         8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B            8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence            444567888999999999999999999999999643 4579999999999999999987

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.64  E-value=9.6e-05  Score=55.10  Aligned_cols=44  Identities=34%  Similarity=0.557  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774          31 QNVSGAFGELRRLVPTH-PPDKKLSKNEILRMSIRYIRLLNGVLE   74 (201)
Q Consensus        31 ~~IN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~lL~   74 (201)
                      -+||..+..|..+||.. ..+-|++|-.||+.|++||.+|+.-..
T Consensus         5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~   49 (83)
T 4ath_A            5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ   49 (83)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred             hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999964 357799999999999999999987443

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=92.04  E-value=0.26  Score=39.69  Aligned_cols=40  Identities=23%  Similarity=0.516  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Q psy5774          31 QNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIRLLN   70 (201)
Q Consensus        31 ~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq   70 (201)
                      -.|+-+|++|.++||-+|. -.+|.|--+|+.|.++...|-
T Consensus        94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~  134 (138)
T 3muj_A           94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY  134 (138)
T ss_dssp             CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence            4688999999999998874 479999999999999988773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-09
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	7e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	4e-08
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	5e-08
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	8e-08
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-07
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-04

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 7  MEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYI 66
          ME+ +      R+     RER R   V+ AF  L+R   ++ P+++L K EILR +IRYI
Sbjct: 1  MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYI 59

Query: 67 RLLNGVLE 74
            L  +L 
Sbjct: 60 EGLQALLR 67

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 7e-09
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 14 RVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL 73
           + V++   N  ER R+  +  +F  LR  +P    ++K  K  IL+ +  YI  +    
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 74 EWQKQ 78
          +    
Sbjct: 62 QKLIS 66

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 4e-08
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTH---PPDKKLSKNEILRMSIRYIRLL 69
          R+   N  ER R+  ++    +L +++P           SK  IL  +  YI+ L
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 23 NTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
          N  E+ R+ ++  +  +L+ LVP  P   + +   +L  +  +I+ L
Sbjct: 6  NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKL 52

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK 77
          ++   N  ER R+ ++  +F  LR  VP     +K S+ +IL  +  YI+ +       +
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVP-SLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60

Query: 78 Q 78
          Q
Sbjct: 61 Q 61

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (106), Expect = 1e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLL 69
          +++      E+ R+  ++ A  EL  L+P            SK   +  + RYIR L
Sbjct: 1  MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK 77
          ++   N  E+  + +++    EL+ LV       KL+K+ +LR +I YIR L    +  K
Sbjct: 6  KRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLK 63

Query: 78 QNEN 81
          Q   
Sbjct: 64 QENL 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.67
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.51
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.46
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.36
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.57

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.7e-17  Score=115.67  Aligned_cols=63  Identities=37%  Similarity=0.487  Sum_probs=56.4

Q ss_pred             CCccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          12 HPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        12 ~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      ......+|..+|.+||.|+..||.+|+.|+.+||..+. +++||++||+.||+||.+|+.+|++
T Consensus         6 ~~~~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~-~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_           6 KTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN-QRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTT-SCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            34455788999999999999999999999999998864 5999999999999999999998863

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=105.66  Aligned_cols=60  Identities=25%  Similarity=0.298  Sum_probs=56.0

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      .||..+|++||.|+..||++|+.|+.+||..+...|+||++||..|++||..|+..+...
T Consensus         5 ~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_           5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999888889999999999999999999887654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2e-14  Score=102.36  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=54.1

Q ss_pred             hhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          19 KIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        19 R~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      |..+|+.||+|+..||.+|+.|+.+||..+...|+||++||+.|++||..|+..+...
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999888889999999999999999999887643

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.5e-14  Score=101.87  Aligned_cols=58  Identities=26%  Similarity=0.415  Sum_probs=52.6

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      ||..+|.+||.|+..||++|+.|+.+||..+ +.|+||++||+.|++||..|+..+...
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~-~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999764 569999999999999999998876543

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.5e-14  Score=98.63  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774          18 RKIFTNTRERWRQQNVSGAFGELRRLVPT----HPPDKKLSKNEILRMSIRYIRLLNGVL   73 (201)
Q Consensus        18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~----~p~~kKLSKietLr~Ai~YI~~Lq~lL   73 (201)
                      ||..+|..||+|+..||.+|+.|+.+||.    ...+.|+||.+||+.|++||.+|+..+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999994    235789999999999999999998744

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.7e-14  Score=96.11  Aligned_cols=55  Identities=25%  Similarity=0.370  Sum_probs=50.4

Q ss_pred             cchhhcchHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHHHH
Q psy5774          17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHP---PDKKLSKNEILRMSIRYIRLLNG   71 (201)
Q Consensus        17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p---~~kKLSKietLr~Ai~YI~~Lq~   71 (201)
                      .||..+|..||.|+..||.+|+.|+.+||...   .+.++||++||..|++||..|+.
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999653   45799999999999999999985

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-12  Score=92.93  Aligned_cols=58  Identities=28%  Similarity=0.366  Sum_probs=52.4

Q ss_pred             ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774          16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW   75 (201)
Q Consensus        16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~   75 (201)
                      ..+|..+|..||.|...||++|+.|+.+||..  ..|+||++||..|++||..|+..++.
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~--~~k~~K~~iL~~a~~yI~~L~~~~~~   61 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQK   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999974  45899999999999999999987654

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-08  Score=68.40  Aligned_cols=43  Identities=33%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774          32 NVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ   76 (201)
Q Consensus        32 ~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~   76 (201)
                      .||+.|..||.+||..  ..|+||+.||..||+||..|+..+..-
T Consensus         3 ~in~~f~~L~~lvP~~--~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L   45 (61)
T d1uklc_           3 SINDKIIELKDLVMGT--DAKMHKSGVLRKAIDYIKYLQQVNHKL   45 (61)
T ss_dssp             CHHHHHHHHHHHHSCS--SCCCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999965  458999999999999999999887654