Psyllid ID: psy5876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Secondary Structure (PSIPRED)
cEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEccEEEccccEEEEEEcccEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEcccccEEEEEccccEEEcccccccccEEEEcccccEEEEEEEcccccccccEEEEEEccHHHHHccHHHHHHEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccc
Coil and Loop (DISEMBL)
mklrmrgtHIVLAElrdtgslefvdtgdfsvmnaaehhqatdvewdptgryvmSGVSLWktkadtgywqwsFQGKIikrfnsptfcqlrwrprpasllsKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Flexible Loop (DISEMBL)
MKLRMRGTHIVLaelrdtgsleFVDTGDFSVMNAAEHHqatdvewdptgRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLrwrprpasllskeqVDKIKKSlkkytpafeakdrqrmnkaskyadlLVVLSCVYT
Low Complexity Region (SEG)
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Disordered region (IsUnstruct)
*******THIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPR************************************KYADLLVVLSCVY*
Disordered Region (DISOPRED)
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRP**************************************DLLVVLSCVYT
Disordered Region (DISEMBL)
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Disordered Region (DISPRO)
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLLVVLSCVYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
P55884	814	Eukaryotic translation in	yes	N/A	0.874	0.153	0.579	8e-38
Q569Z1	688	Eukaryotic translation in	N/A	N/A	0.874	0.181	0.571	9e-38
Q8JZQ9	803	Eukaryotic translation in	yes	N/A	0.874	0.155	0.571	2e-37
Q4G061	797	Eukaryotic translation in	yes	N/A	0.874	0.156	0.571	2e-37
A7MB16	786	Eukaryotic translation in	yes	N/A	0.874	0.159	0.563	1e-36
Q1HDZ5	695	Eukaryotic translation in	N/A	N/A	0.867	0.178	0.584	3e-36
Q0IEY3	688	Eukaryotic translation in	N/A	N/A	0.860	0.178	0.576	1e-34
Q7PZY1	683	Eukaryotic translation in	yes	N/A	0.860	0.180	0.56	5e-34
B0W562	688	Eukaryotic translation in	N/A	N/A	0.860	0.178	0.56	6e-34
B4MQL8	690	Eukaryotic translation in	N/A	N/A	0.867	0.179	0.555	1e-33

>sp|P55884|EIF3B_HUMAN Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3

 Score =  155 bits (391), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 6   RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct: 619 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 678

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
             YW W+FQG+++++ N   FCQL WRPRP +LLS+EQ+ +IKK LKKY+  FE KDR  
Sbjct: 679 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLS 738

Query: 125 MNKASK 130
            +KASK
Sbjct: 739 QSKASK 744

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.
Homo sapiens (taxid: 9606)

>sp|Q569Z1|EIF3B_XENLA Eukaryotic translation initiation factor 3 subunit B OS=Xenopus laevis GN=eif3b PE=2 SV=1

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 6   RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           +G  +VLA LR   G+L FVDT D ++MN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct: 495 QGQFLVLAGLRSMNGALAFVDTSDCTIMNIAEHYTASDVEWDPTGRYVITSVSWWSHKVD 554

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
             YW W+FQG+++++ N   FCQL WRPRP SLLS++Q+ +IKK LKKY+  FE KDR  
Sbjct: 555 NAYWMWTFQGRLLQKNNKDRFCQLLWRPRPPSLLSQDQIKQIKKDLKKYSKIFEQKDRLS 614

Query: 125 MNKASK 130
             KASK
Sbjct: 615 QTKASK 620

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q8JZQ9|EIF3B_MOUSE Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus GN=Eif3b PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 6   RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct: 608 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 667

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
             YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct: 668 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 727

Query: 125 MNKASK 130
            +KASK
Sbjct: 728 QSKASK 733

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Mus musculus (taxid: 10090)

>sp|Q4G061|EIF3B_RAT Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus GN=Eif3b PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 6   RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct: 602 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 661

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
             YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct: 662 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 721

Query: 125 MNKASK 130
            +KASK
Sbjct: 722 QSKASK 727

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Rattus norvegicus (taxid: 10116)

>sp|A7MB16|EIF3B_BOVIN Eukaryotic translation initiation factor 3 subunit B OS=Bos taurus GN=EIF3B PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 93/126 (73%), Gaps = 1/126 (0%)

Query: 6   RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct: 591 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 650

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
             YW W+FQG+++++ +   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct: 651 NAYWLWTFQGRLLQKNSKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 710

Query: 125 MNKASK 130
            +KASK
Sbjct: 711 QSKASK 716

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Bos taurus (taxid: 9913)

>sp|Q1HDZ5|EIF3B_BOMMO Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori GN=eIF3-S9 PE=2 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 93/125 (74%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRDTG-SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L  TG +LEF+DT DF++MN A+H+Q + +EWDPTGRYV++GVS  K K D 
Sbjct: 504 GQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMDC 563

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GY+ WSFQGKI++R     F Q  WRPRP +LLS++Q  +IKK+LKKY   FE+KDR R 
Sbjct: 564 GYYIWSFQGKILRRVMKEGFAQFHWRPRPPTLLSEKQQKEIKKNLKKYYSQFESKDRMRS 623

Query: 126 NKASK 130
           +KASK
Sbjct: 624 SKASK 628

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q0IEY3|EIF3B_AEDAE Eukaryotic translation initiation factor 3 subunit B OS=Aedes aegypti GN=eIF3-S9 PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 90/125 (72%), Gaps = 2/125 (1%)

Query: 6   RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           RG  IVLA L+  GS EFVDT DF++M + +H +A++VEWDPTGRYV++G S  K K D 
Sbjct: 499 RGQFIVLANLQ-AGSFEFVDTNDFTIMKSGDHFRASEVEWDPTGRYVVTGTS-GKVKEDH 556

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GY  WSFQGKI+KR N   F    WRPRP +LLS E+  +I+K+LKKY   FE+KDR RM
Sbjct: 557 GYHIWSFQGKILKRVNLKNFILFLWRPRPPTLLSDEKQKEIRKNLKKYYAQFESKDRIRM 616

Query: 126 NKASK 130
            +ASK
Sbjct: 617 TRASK 621

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|Q7PZY1|EIF3B_ANOGA Eukaryotic translation initiation factor 3 subunit B OS=Anopheles gambiae GN=eIF3-S9 PE=3 SV=3

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 89/125 (71%), Gaps = 2/125 (1%)

Query: 6   RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           RG  IVLA L+  G+ EFVDT DFS+M   +H++A++VEWDPTGRYV++G S  K K D 
Sbjct: 494 RGQFIVLANLQ-MGTFEFVDTNDFSIMKTGDHYRASEVEWDPTGRYVVTGTS-GKAKEDQ 551

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GY+ WSFQG+I+KR N   F    WRPRP +LLS  +  +I K+LKKY   FE+KDR RM
Sbjct: 552 GYYMWSFQGRILKRVNLKNFMLFLWRPRPPTLLSDAKQKEILKNLKKYYSQFESKDRLRM 611

Query: 126 NKASK 130
            +ASK
Sbjct: 612 TRASK 616

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|B0W562|EIF3B_CULQU Eukaryotic translation initiation factor 3 subunit B OS=Culex quinquefasciatus GN=eIF3-S9 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 2/125 (1%)

Query: 6   RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           RG  IVLA L+  GS EFVDT DF++M + +H++A++VEWDPTGRYV++G S  K K D 
Sbjct: 499 RGQFIVLANLQ-MGSFEFVDTNDFTIMKSGDHYRASEVEWDPTGRYVVTGTS-GKVKEDH 556

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GY  WSFQG+I+KR N   F    WRPRP +LL  E+  +I+K+LKKY   FE+KDR RM
Sbjct: 557 GYHLWSFQGRILKRVNLKNFMLFLWRPRPPTLLPDERQKEIRKNLKKYYAQFESKDRVRM 616

Query: 126 NKASK 130
            +ASK
Sbjct: 617 TRASK 621

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|B4MQL8|EIF3B_DROWI Eukaryotic translation initiation factor 3 subunit B OS=Drosophila willistoni GN=eIF3-S9 PE=3 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 91/126 (72%), Gaps = 2/126 (1%)

Query: 6   RGTHIVLAELRDTGSLEFVDT-GDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
           RG  IV+A L   G+ EFVDT  D+ +  + +H +A++VEWDPTGRYV++GVS WK K D
Sbjct: 501 RGQFIVMANLT-MGTFEFVDTTNDYIISASPDHFRASEVEWDPTGRYVVTGVSSWKVKED 559

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
           TG+  ++FQG+IIKR     F Q  WRPRP +LLS+E+   IKK+LKKY PAFE KDR R
Sbjct: 560 TGFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKDIKKNLKKYYPAFEQKDRLR 619

Query: 125 MNKASK 130
           + +ASK
Sbjct: 620 LTRASK 625

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila willistoni (taxid: 7260)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
328721361	688	PREDICTED: eukaryotic translation initia	0.867	0.180	0.645	3e-44
340724912	702	PREDICTED: eukaryotic translation initia	0.867	0.176	0.592	2e-38
340724914	695	PREDICTED: eukaryotic translation initia	0.867	0.178	0.592	2e-38
66548942	702	PREDICTED: eukaryotic translation initia	0.867	0.176	0.592	2e-38
380027617	702	PREDICTED: eukaryotic translation initia	0.867	0.176	0.592	2e-38
380027619	695	PREDICTED: eukaryotic translation initia	0.867	0.178	0.592	2e-38
332017476	703	Eukaryotic translation initiation factor	0.867	0.176	0.592	2e-38
307182083	702	Eukaryotic translation initiation factor	0.867	0.176	0.592	2e-38
321454284	701	hypothetical protein DAPPUDRAFT_303630 [	0.867	0.176	0.632	3e-38
307201828	702	Eukaryotic translation initiation factor	0.867	0.176	0.592	3e-38

>gi|328721361|ref|XP_001944064.2| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Acyrthosiphon pisum]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 101/124 (81%)

Query: 7   GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTG 66
           G +IV+AE+RD+G+LEFVDT DF+ M + EH++ATD+EWDPTGR+V +GVS WKTK DTG
Sbjct: 498 GQYIVIAEIRDSGALEFVDTADFTTMCSTEHYKATDIEWDPTGRFVATGVSSWKTKGDTG 557

Query: 67  YWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMN 126
           YW WSFQG+I+ RFN+ T+C ++WRPRP +LLS +Q    KKSLKKYT  FE KD+ RM 
Sbjct: 558 YWIWSFQGRILNRFNTNTYCHMQWRPRPPTLLSAKQQKDTKKSLKKYTSQFETKDKMRMT 617

Query: 127 KASK 130
           KASK
Sbjct: 618 KASK 621

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724912|ref|XP_003400822.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 1 [Bombus terrestris] gi|350422045|ref|XP_003493038.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 1 [Bombus impatiens]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 509 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 569 GYWIWTFQGRILKRVNLNQFNQLLWRPRPPTLLTPEQIKEIKKNLKKYSAQFESKDRMRL 628

Query: 126 NKASK 130
            +ASK
Sbjct: 629 TRASK 633

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724914|ref|XP_003400823.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 2 [Bombus terrestris] gi|350422049|ref|XP_003493039.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 2 [Bombus impatiens]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 502 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 561

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 562 GYWIWTFQGRILKRVNLNQFNQLLWRPRPPTLLTPEQIKEIKKNLKKYSAQFESKDRMRL 621

Query: 126 NKASK 130
            +ASK
Sbjct: 622 TRASK 626

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66548942|ref|XP_393588.2| PREDICTED: eukaryotic translation initiation factor 3 subunit B isoform 1 [Apis mellifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 509 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 569 GYWIWTFQGRILKRVNLNQFNQLLWRPRPPTLLTPEQIKEIKKNLKKYSAQFESKDRMRL 628

Query: 126 NKASK 130
            +ASK
Sbjct: 629 TRASK 633

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027617|ref|XP_003697518.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 1 [Apis florea]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 509 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 569 GYWIWTFQGRILKRVNLNQFNQLLWRPRPPTLLTPEQIKEIKKNLKKYSAQFESKDRMRL 628

Query: 126 NKASK 130
            +ASK
Sbjct: 629 TRASK 633

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027619|ref|XP_003697519.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform 2 [Apis florea]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 502 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 561

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 562 GYWIWTFQGRILKRVNLNQFNQLLWRPRPPTLLTPEQIKEIKKNLKKYSAQFESKDRMRL 621

Query: 126 NKASK 130
            +ASK
Sbjct: 622 TRASK 626

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017476|gb|EGI58199.1| Eukaryotic translation initiation factor 3 subunit B [Acromyrmex echinatior]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 510 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 569

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 570 GYWIWTFQGRILKRVNLTAFNQLLWRPRPPTLLTAEQIKEIKKNLKKYSAQFESKDRMRL 629

Query: 126 NKASK 130
            +ASK
Sbjct: 630 TRASK 634

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182083|gb|EFN69461.1| Eukaryotic translation initiation factor 3 subunit B [Camponotus floridanus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN+ +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 509 GQFIVLAGLTTMAGALEFIDTNDFTIMNSTDHYQTSDVEWDPTGRYVVTAVSSWKTSVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 569 GYWIWTFQGRILKRVNLNAFNQLLWRPRPPTLLTAEQIKEIKKNLKKYSAQFESKDRMRL 628

Query: 126 NKASK 130
            +ASK
Sbjct: 629 TRASK 633

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321454284|gb|EFX65461.1| hypothetical protein DAPPUDRAFT_303630 [Daphnia pulex]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 91/125 (72%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA LR  +G+LEFVDT DF+VMN  EH  ATDVEWDPTGRYV + VS W  K D 
Sbjct: 509 GQFIVLAGLRAMSGTLEFVDTHDFTVMNTGEHFMATDVEWDPTGRYVATAVSWWGHKVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
            YW WSFQG+I+KR     FCQL+WRPRP SLL  +Q+  IKKSLKK++  FE KDR +M
Sbjct: 569 AYWLWSFQGRILKRVALDKFCQLQWRPRPPSLLPAQQIKDIKKSLKKFSAQFEVKDRLKM 628

Query: 126 NKASK 130
            KASK
Sbjct: 629 TKASK 633

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201828|gb|EFN81493.1| Eukaryotic translation initiation factor 3 subunit B [Harpegnathos saltator]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 95/125 (76%), Gaps = 1/125 (0%)

Query: 7   GTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
           G  IVLA L    G+LEF+DT DF++MN  +H+Q +DVEWDPTGRYV++ VS WKT  D 
Sbjct: 509 GQFIVLAGLTTMAGALEFIDTNDFTIMNLTDHYQTSDVEWDPTGRYVVTAVSSWKTNVDN 568

Query: 66  GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
           GYW W+FQG+I+KR N   F QL WRPRP +LL+ EQ+ +IKK+LKKY+  FE+KDR R+
Sbjct: 569 GYWIWTFQGRILKRVNLNAFNQLLWRPRPPTLLTAEQIKEIKKNLKKYSAQFESKDRMRL 628

Query: 126 NKASK 130
            +ASK
Sbjct: 629 TRASK 633

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|Q569Z1	688	eif3b "Eukaryotic translation	0.874	0.181	0.571	2.2e-36
UNIPROTKB|P55884	814	EIF3B "Eukaryotic translation	0.874	0.153	0.579	2.5e-36
RGD|1309018	797	Eif3b "eukaryotic translation	0.874	0.156	0.571	4.9e-36
UNIPROTKB|Q4G061	797	Eif3b "Eukaryotic translation	0.874	0.156	0.571	4.9e-36
MGI|MGI:106478	803	Eif3b "eukaryotic translation	0.874	0.155	0.571	5e-36
UNIPROTKB|F1P969	813	EIF3B "Uncharacterized protein	0.874	0.153	0.571	5.2e-36
UNIPROTKB|A7MB16	786	EIF3B "Eukaryotic translation	0.874	0.159	0.563	1.6e-35
ZFIN|ZDB-GENE-090312-175	648	eif3bb "eukaryotic translation	0.874	0.192	0.563	2.7e-35
ZFIN|ZDB-GENE-030131-2748	683	eif3ba "eukaryotic translation	0.874	0.183	0.551	7.3e-35
UNIPROTKB|Q1HDZ5	695	eIF3-S9 "Eukaryotic translatio	0.867	0.178	0.584	1.7e-34

UNIPROTKB|Q569Z1 eif3b "Eukaryotic translation initiation factor 3 subunit B" [Xenopus laevis (taxid:8355)]

 Score = 398 (145.2 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 72/126 (57%), Positives = 92/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D ++MN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   495 QGQFLVLAGLRSMNGALAFVDTSDCTIMNIAEHYTASDVEWDPTGRYVITSVSWWSHKVD 554

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP SLLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   555 NAYWMWTFQGRLLQKNNKDRFCQLLWRPRPPSLLSQDQIKQIKKDLKKYSKIFEQKDRLS 614

Query:   125 MNKASK 130
               KASK
Sbjct:   615 QTKASK 620

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|P55884 EIF3B "Eukaryotic translation initiation factor 3 subunit B" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 2.5e-36, P = 2.5e-36
 Identities = 73/126 (57%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   619 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 678

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS+EQ+ +IKK LKKY+  FE KDR  
Sbjct:   679 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLS 738

Query:   125 MNKASK 130
              +KASK
Sbjct:   739 QSKASK 744

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0006446 "regulation of translational initiation" evidence=IDA

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|1309018 Eif3b "eukaryotic translation initiation factor 3, subunit B" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 72/126 (57%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   602 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 661

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   662 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 721

Query:   125 MNKASK 130
              +KASK
Sbjct:   722 QSKASK 727

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO;ISS

GO:0006413 "translational initiation" evidence=ISO;ISS

GO:0006446 "regulation of translational initiation" evidence=ISO;ISS

UNIPROTKB|Q4G061 Eif3b "Eukaryotic translation initiation factor 3 subunit B" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 72/126 (57%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   602 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 661

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   662 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 721

Query:   125 MNKASK 130
              +KASK
Sbjct:   722 QSKASK 727

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:106478 Eif3b "eukaryotic translation initiation factor 3, subunit B" [Mus musculus (taxid:10090)]

 Score = 397 (144.8 bits), Expect = 5.0e-36, P = 5.0e-36
 Identities = 72/126 (57%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   608 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 667

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   668 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 727

Query:   125 MNKASK 130
              +KASK
Sbjct:   728 QSKASK 733

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO;IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=ISO;IDA

GO:0006446 "regulation of translational initiation" evidence=ISO

GO:0031369 "translation initiation factor binding" evidence=IEA

UNIPROTKB|F1P969 EIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 397 (144.8 bits), Expect = 5.2e-36, P = 5.2e-36
 Identities = 72/126 (57%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   618 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 677

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   678 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 737

Query:   125 MNKASK 130
              +KASK
Sbjct:   738 QSKASK 743

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A7MB16 EIF3B "Eukaryotic translation initiation factor 3 subunit B" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 71/126 (56%), Positives = 93/126 (73%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D +VMN AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   591 QGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 650

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ +   FCQL WRPRP +LLS++Q+ +IKK LKKY+  FE KDR  
Sbjct:   651 NAYWLWTFQGRLLQKNSKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLS 710

Query:   125 MNKASK 130
              +KASK
Sbjct:   711 QSKASK 716

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-090312-175 eif3bb "eukaryotic translation initiation factor 3, subunit Bb" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 71/126 (56%), Positives = 91/126 (72%)

Query:     6 RGTHIVLAELRD-TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
             +G  +VLA LR   G+L FVDT D ++M  AEH+ A+DVEWDPTGRYV++ VS W  K D
Sbjct:   453 QGQFMVLAGLRSMNGALAFVDTSDCTIMYIAEHYMASDVEWDPTGRYVVTSVSWWSHKVD 512

Query:    65 TGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQR 124
               YW W+FQG+++++ N   FCQL WRPRP +LLS+EQ+  IKK LKKY+  FE KDR  
Sbjct:   513 NAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKAIKKDLKKYSKIFEQKDRLS 572

Query:   125 MNKASK 130
              +KASK
Sbjct:   573 QSKASK 578

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0031369 "translation initiation factor binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-030131-2748 eif3ba "eukaryotic translation initiation factor 3, subunit Ba" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 7.3e-35, P = 7.3e-35
 Identities = 70/127 (55%), Positives = 93/127 (73%)

Query:     6 RGTHIVLAELRDT--GSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKA 63
             +G  +VLA LR +  G+L FVDT D ++MN AEH+ A+DVEWDPTGR+V++ VS W  K 
Sbjct:   489 QGQFLVLAGLRSSMNGALAFVDTSDCTMMNIAEHYMASDVEWDPTGRFVVTSVSWWSHKV 548

Query:    64 DTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQ 123
             D  +W W+FQG+++++ N   FCQL WRPRP SLL++EQ+  IKK LKKY+  FE KDR 
Sbjct:   549 DNAFWLWTFQGRLLQKNNKERFCQLLWRPRPPSLLTQEQIKLIKKDLKKYSKIFEQKDRL 608

Query:   124 RMNKASK 130
               +KASK
Sbjct:   609 SQSKASK 615

GO:0031369 "translation initiation factor binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q1HDZ5 eIF3-S9 "Eukaryotic translation initiation factor 3 subunit B" [Bombyx mori (taxid:7091)]

 Score = 381 (139.2 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 73/125 (58%), Positives = 93/125 (74%)

Query:     7 GTHIVLAELRDTG-SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT 65
             G  IVLA L  TG +LEF+DT DF++MN A+H+Q + +EWDPTGRYV++GVS  K K D 
Sbjct:   504 GQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMDC 563

Query:    66 GYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRM 125
             GY+ WSFQGKI++R     F Q  WRPRP +LLS++Q  +IKK+LKKY   FE+KDR R 
Sbjct:   564 GYYIWSFQGKILRRVMKEGFAQFHWRPRPPTLLSEKQQKEIKKNLKKYYSQFESKDRMRS 623

Query:   126 NKASK 130
             +KASK
Sbjct:   624 SKASK 628

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E940	EIF3B_DROME	No assigned EC number	0.5476	0.8671	0.1797	yes	N/A
B5E081	EIF3B_DROPS	No assigned EC number	0.5476	0.8671	0.1797	yes	N/A
A7MB16	EIF3B_BOVIN	No assigned EC number	0.5634	0.8741	0.1590	yes	N/A
Q4G061	EIF3B_RAT	No assigned EC number	0.5714	0.8741	0.1568	yes	N/A
P55884	EIF3B_HUMAN	No assigned EC number	0.5793	0.8741	0.1535	yes	N/A
Q7PZY1	EIF3B_ANOGA	No assigned EC number	0.56	0.8601	0.1800	yes	N/A
Q8JZQ9	EIF3B_MOUSE	No assigned EC number	0.5714	0.8741	0.1556	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	2e-19
COG5354	561	COG5354, COG5354, Uncharacterized protein, contain	2e-11

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 6   RGTHIVLAELRDT-GSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64
            G  ++LA   +  G +EF D  +   +  AE   ATD EW P GRY ++  +  + + D
Sbjct: 111 FGRLVLLAGFGNLAGQIEFWDVKNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVD 170

Query: 65  TGYWQWSFQGKIIKRFNSPTFCQL 88
            G+  W + GK++ +++     Q+
Sbjct: 171 NGFKIWHYSGKLVYKYDFDELYQV 194

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 27/96 (28%), Positives = 42/96 (43%)

Query: 35  AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRP 94
           A+  + T++ WDP+G+YV +  S  K K + GY  +   G +        F    WRP P
Sbjct: 397 AKVFELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEP 456

Query: 95  ASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASK 130
            S L+ E   K  K  +     FE       + A++
Sbjct: 457 PSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANR 492

Length = 561

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG2314|consensus	698		99.92
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.84
KOG0271|consensus	480		99.81
KOG2315|consensus	566		99.75
KOG0263|consensus	707		99.74
KOG0271|consensus	480		99.73
KOG0272|consensus	459		99.73
KOG0279|consensus	315		99.71
KOG0266|consensus	456		99.7
KOG0272|consensus	459		99.7
KOG0645|consensus	312		99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PTZ00421	493	coronin; Provisional	99.65
KOG0645|consensus	312		99.64
KOG0293|consensus	519		99.64
KOG0266|consensus	456		99.64
KOG0275|consensus	508		99.62
KOG0293|consensus	519		99.62
KOG0284|consensus	464		99.6
PTZ00420	568	coronin; Provisional	99.6
KOG0263|consensus	707		99.59
KOG0273|consensus	524		99.56
KOG1273|consensus	405		99.56
KOG0291|consensus	893		99.55
KOG0273|consensus	524		99.55
KOG0295|consensus	406		99.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.54
KOG0283|consensus	712		99.53
KOG2394|consensus	636		99.53
KOG0279|consensus	315		99.5
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.5
PTZ00421	493	coronin; Provisional	99.49
KOG1407|consensus	313		99.49
KOG0973|consensus	942		99.49
KOG0318|consensus	603		99.49
KOG0291|consensus	893		99.48
KOG0315|consensus	311		99.47
KOG1407|consensus	313		99.47
KOG0318|consensus	603		99.47
KOG0286|consensus	343		99.47
PLN00181	793	protein SPA1-RELATED; Provisional	99.46
PTZ00420	568	coronin; Provisional	99.45
KOG0319|consensus	775		99.45
KOG0973|consensus	942		99.45
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.45
KOG0283|consensus	712		99.44
KOG0772|consensus	641		99.43
KOG0286|consensus	343		99.43
PLN00181	793	protein SPA1-RELATED; Provisional	99.42
KOG0265|consensus	338		99.42
KOG0640|consensus	430		99.42
KOG0282|consensus	503		99.42
KOG0282|consensus	503		99.41
KOG0647|consensus	347		99.4
KOG0316|consensus	307		99.39
KOG0284|consensus	464		99.38
KOG0295|consensus	406		99.36
KOG0772|consensus	641		99.36
KOG1063|consensus	764		99.36
KOG0319|consensus	775		99.34
KOG0275|consensus	508		99.34
KOG1274|consensus	933		99.32
KOG2110|consensus	391		99.31
KOG0306|consensus	888		99.3
KOG0302|consensus	440		99.3
KOG0288|consensus	459		99.28
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.28
KOG0289|consensus	506		99.28
KOG2139|consensus	445		99.28
KOG0276|consensus	794		99.27
KOG0296|consensus	399		99.26
KOG0278|consensus	334		99.26
KOG0285|consensus	460		99.25
KOG0292|consensus	1202		99.25
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.25
KOG0315|consensus	311		99.24
KOG0310|consensus	487		99.24
KOG0305|consensus	484		99.24
KOG0265|consensus	338		99.23
KOG0305|consensus	484		99.23
KOG1009|consensus	434		99.23
KOG0289|consensus	506		99.22
KOG0292|consensus	1202		99.21
KOG1446|consensus	311		99.21
KOG1445|consensus	1012		99.19
KOG1274|consensus	933		99.19
KOG0641|consensus	350		99.18
KOG0640|consensus	430		99.16
KOG0296|consensus	399		99.15
PRK01742	429	tolB translocation protein TolB; Provisional	99.15
KOG1539|consensus	910		99.14
KOG1539|consensus	910		99.13
KOG1538|consensus	1081		99.13
KOG0771|consensus	398		99.12
KOG0267|consensus	825		99.11
KOG2394|consensus	636		99.1
KOG0267|consensus	825		99.09
KOG0268|consensus	433		99.09
KOG0303|consensus	472		99.08
KOG0308|consensus	735		99.08
KOG0269|consensus	839		99.06
KOG0285|consensus	460		99.06
KOG0306|consensus	888		99.05
PRK03629	429	tolB translocation protein TolB; Provisional	99.05
KOG2096|consensus	420		99.05
KOG0643|consensus	327		99.04
KOG1007|consensus	370		99.04
KOG0269|consensus	839		99.03
KOG0643|consensus	327		99.03
KOG1034|consensus	385		99.02
PRK05137	435	tolB translocation protein TolB; Provisional	99.02
KOG0313|consensus	423		99.02
KOG0294|consensus	362		99.01
KOG2096|consensus	420		99.0
KOG0316|consensus	307		99.0
PRK01742	429	tolB translocation protein TolB; Provisional	98.99
KOG0639|consensus	705		98.98
PRK02889	427	tolB translocation protein TolB; Provisional	98.98
KOG0288|consensus	459		98.97
KOG0641|consensus	350		98.96
KOG0264|consensus	422		98.96
KOG2106|consensus	626		98.94
KOG0299|consensus	479		98.93
KOG4497|consensus	447		98.92
PRK04922	433	tolB translocation protein TolB; Provisional	98.92
KOG1063|consensus	764		98.92
KOG1524|consensus	737		98.92
KOG0646|consensus	476		98.92
KOG0310|consensus	487		98.92
KOG0281|consensus	499		98.91
KOG0277|consensus	311		98.91
KOG0313|consensus	423		98.9
PRK03629	429	tolB translocation protein TolB; Provisional	98.9
KOG0276|consensus	794		98.89
KOG0771|consensus	398		98.89
KOG0308|consensus	735		98.89
KOG0264|consensus	422		98.87
KOG0294|consensus	362		98.86
KOG0302|consensus	440		98.85
KOG1446|consensus	311		98.85
PRK05137	435	tolB translocation protein TolB; Provisional	98.84
KOG2055|consensus	514		98.84
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.83
PRK04792	448	tolB translocation protein TolB; Provisional	98.82
KOG1445|consensus	1012		98.82
KOG4497|consensus	447		98.82
KOG0278|consensus	334		98.82
PRK11028	330	6-phosphogluconolactonase; Provisional	98.81
KOG0639|consensus	705		98.81
PRK00178	430	tolB translocation protein TolB; Provisional	98.81
KOG2055|consensus	514		98.81
KOG1009|consensus	434		98.8
KOG1963|consensus	792		98.8
PRK11028	330	6-phosphogluconolactonase; Provisional	98.8
KOG0277|consensus	311		98.79
KOG1332|consensus	299		98.79
KOG1408|consensus	1080		98.78
KOG0270|consensus	463		98.78
PRK02889	427	tolB translocation protein TolB; Provisional	98.77
KOG0300|consensus	481		98.77
KOG2048|consensus	691		98.77
PRK04922	433	tolB translocation protein TolB; Provisional	98.77
KOG0274|consensus	537		98.77
KOG0268|consensus	433		98.76
KOG2110|consensus	391		98.76
COG2319	466	FOG: WD40 repeat [General function prediction only	98.75
KOG0303|consensus	472		98.75
KOG0274|consensus	537		98.75
KOG1034|consensus	385		98.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.74
PRK01029	428	tolB translocation protein TolB; Provisional	98.74
KOG1332|consensus	299		98.72
KOG0647|consensus	347		98.72
KOG1036|consensus	323		98.72
KOG0301|consensus	745		98.71
KOG2111|consensus	346		98.71
KOG0281|consensus	499		98.71
KOG2111|consensus	346		98.7
KOG2445|consensus	361		98.68
KOG2919|consensus	406		98.68
KOG0974|consensus	967		98.67
KOG1408|consensus	1080		98.67
KOG0299|consensus	479		98.66
KOG2139|consensus	445		98.64
KOG0646|consensus	476		98.61
KOG2314|consensus	698		98.61
PRK04792	448	tolB translocation protein TolB; Provisional	98.6
KOG1273|consensus	405		98.6
KOG1523|consensus	361		98.59
KOG0301|consensus	745		98.59
KOG1524|consensus	737		98.59
KOG0650|consensus	733		98.59
KOG1310|consensus	758		98.58
KOG2315|consensus	566		98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
KOG0270|consensus	463		98.57
KOG0322|consensus	323		98.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.56
KOG4378|consensus	673		98.55
COG2319	466	FOG: WD40 repeat [General function prediction only	98.55
KOG2048|consensus	691		98.54
KOG1538|consensus	1081		98.54
KOG1007|consensus	370		98.53
PRK04043	419	tolB translocation protein TolB; Provisional	98.51
KOG1963|consensus	792		98.51
KOG4283|consensus	397		98.5
KOG2106|consensus	626		98.5
PRK00178	430	tolB translocation protein TolB; Provisional	98.5
KOG4283|consensus	397		98.49
KOG0642|consensus	577		98.47
PRK04043	419	tolB translocation protein TolB; Provisional	98.47
KOG0322|consensus	323		98.47
PRK01029	428	tolB translocation protein TolB; Provisional	98.47
KOG0307|consensus	1049		98.43
KOG4378|consensus	673		98.41
KOG2919|consensus	406		98.36
KOG1272|consensus	545		98.35
KOG1523|consensus	361		98.34
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.31
KOG4227|consensus	609		98.3
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.3
KOG4328|consensus	498		98.29
KOG0307|consensus	1049		98.28
KOG4328|consensus	498		98.22
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.22
KOG2445|consensus	361		98.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.19
KOG1188|consensus	376		98.19
KOG0650|consensus	733		98.17
KOG3914|consensus	390		98.12
KOG0974|consensus	967		98.1
COG4946	668	Uncharacterized protein related to the periplasmic	98.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.08
KOG0321|consensus	720		98.06
KOG0290|consensus	364		98.05
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.03
KOG3881|consensus	412		98.01
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.96
KOG0300|consensus	481		97.93
KOG0290|consensus	364		97.91
KOG0321|consensus	720		97.86
COG4946	668	Uncharacterized protein related to the periplasmic	97.85
KOG0649|consensus	325		97.84
KOG4547|consensus	541		97.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.83
KOG1036|consensus	323		97.82
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.81
KOG1272|consensus	545		97.81
KOG1517|consensus	1387		97.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.79
KOG2321|consensus	703		97.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.75
KOG0642|consensus	577		97.75
KOG0649|consensus	325		97.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.74
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.69
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.69
KOG1310|consensus	758		97.69
KOG4640|consensus	665		97.65
KOG0644|consensus	1113		97.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.64
KOG3914|consensus	390		97.61
KOG0280|consensus	339		97.6
PRK13616	591	lipoprotein LpqB; Provisional	97.6
KOG2321|consensus	703		97.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.51
PRK02888	635	nitrous-oxide reductase; Validated	97.5
KOG1587|consensus	555		97.5
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.42
KOG3881|consensus	412		97.41
KOG4714|consensus	319		97.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.39
KOG1517|consensus	1387		97.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.37
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.33
KOG4547|consensus	541		97.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.15
KOG3621|consensus	726		97.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.11
KOG1920|consensus	1265		97.06
KOG1587|consensus	555		96.99
KOG3617|consensus	1416		96.97
KOG1188|consensus	376		96.93
KOG4532|consensus	344		96.92
PRK13616	591	lipoprotein LpqB; Provisional	96.88
KOG1240|consensus	1431		96.86
KOG2066|consensus	846		96.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.79
PRK10115	686	protease 2; Provisional	96.73
KOG1064|consensus	2439		96.67
KOG2066|consensus	846		96.6
KOG1354|consensus	433		96.57
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.55
KOG1920|consensus	1265		96.5
KOG4714|consensus	319		96.46
KOG4227|consensus	609		96.46
KOG1334|consensus	559		96.4
KOG0644|consensus	1113		96.4
KOG1064|consensus	2439		96.38
KOG1354|consensus	433		96.36
KOG0280|consensus	339		96.3
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.28
KOG1645|consensus	463		96.26
PRK02888	635	nitrous-oxide reductase; Validated	96.22
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.21
KOG2041|consensus	1189		96.1
KOG2041|consensus	1189		96.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.99
KOG2695|consensus	425		95.98
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.85
COG3391	381	Uncharacterized conserved protein [Function unknow	95.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.76
KOG3617|consensus	1416		95.56
KOG1240|consensus	1431		95.53
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.46
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.37
KOG4532|consensus	344		95.26
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.25
KOG4640|consensus	665		95.25
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.08
KOG1334|consensus	559		95.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.97
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.86
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.42
KOG2079|consensus	1206		94.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.24
KOG4190|consensus	1034		94.06
KOG1912|consensus	1062		94.02
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.02
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.86
KOG1275|consensus	1118		93.82
COG3391	381	Uncharacterized conserved protein [Function unknow	93.73
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.52
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.28
KOG1409|consensus	404		93.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.19
KOG2695|consensus	425		92.79
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.54
KOG1912|consensus	1062		92.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.3
PRK13684	334	Ycf48-like protein; Provisional	92.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.71
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.48
PRK10115	686	protease 2; Provisional	91.38
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.2
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.45
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.22
KOG1645|consensus	463		90.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.86
KOG1409|consensus	404		89.5
KOG1832|consensus	1516		89.42
KOG3621|consensus	726		88.91
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.81
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.5
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.37
KOG4460|consensus	741		88.15
KOG4190|consensus	1034		88.14
KOG2079|consensus	1206		87.65
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	87.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.94
KOG1916|consensus	1283		86.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	86.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.02
KOG0309|consensus	1081		85.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.84
KOG4649|consensus	354		85.84
KOG2395|consensus	644		85.54
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	85.38
KOG3630|consensus	1405		85.17
KOG1832|consensus	1516		83.73
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.71
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	83.45
PRK13684	334	Ycf48-like protein; Provisional	83.29
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	83.2
KOG2100|consensus	755		83.16
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.12
KOG2114|consensus	933		83.05
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	82.86
KOG2377|consensus	657		82.61
KOG0882|consensus	558		81.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.54
KOG4499|consensus	310		81.39
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	81.05

>KOG2314|consensus

Probab=99.92  E-value=1.5e-26  Score=192.20  Aligned_cols=134  Identities=46%  Similarity=0.757  Sum_probs=123.2

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      +.|||.|++++.++.. ..|.+.|+|++  +.+.+...+|...+.+.|+|.|||++|+++.|+.+.|++++||+++|++|
T Consensus       498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll  577 (698)
T KOG2314|consen  498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL  577 (698)
T ss_pred             EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence            5799999999998764 57999999988  55666666788999999999999999999999999999999999999999


Q ss_pred             EeccCCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhccHHhHHHHhhcccccee
Q psy5876          78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADL  134 (143)
Q Consensus        78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~  134 (143)
                      .+...+++..+.|+|.|+.++|..+.++||||||.|+++||++|.+++.+|+||..+
T Consensus       578 ~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElve  634 (698)
T KOG2314|consen  578 KEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVE  634 (698)
T ss_pred             HHHHHHHHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHH
Confidence            887778889999999999999999999999999999999999999999999999764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.84  E-value=1.1e-20  Score=141.93  Aligned_cols=86  Identities=33%  Similarity=0.588  Sum_probs=77.5

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      |.|||+|++||+||++ ..|.|+|||+++.+.+.+.++..++.++||||||||+|+++.||++.|++++||+++|+++.+
T Consensus       106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~  185 (194)
T PF08662_consen  106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK  185 (194)
T ss_pred             EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence            5899999999999875 468899999999999999888889999999999999999999999999999999999999987


Q ss_pred             ccCCcEE
Q psy5876          80 FNSPTFC   86 (143)
Q Consensus        80 ~~~~~v~   86 (143)
                      ...+.++
T Consensus       186 ~~~~~l~  192 (194)
T PF08662_consen  186 KPFDELY  192 (194)
T ss_pred             cchhhhh
Confidence            6654443

>KOG0271|consensus

Probab=99.81  E-value=8.2e-20  Score=147.08  Aligned_cols=99  Identities=18%  Similarity=0.351  Sum_probs=88.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|||||+|||+++|  |..|++||..+|+.+.++. | ..|+.|+||.|.|+|++||      .|.++++|++..+.+.
T Consensus       373 V~fSPd~r~IASaSF--DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S------kDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  373 VSFSPDGRYIASASF--DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS------KDSTLKVWDVRTKKLK  444 (480)
T ss_pred             EEECCCccEEEEeec--ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC------CCceEEEEEeeeeeec
Confidence            579999999999996  8999999999999988874 3 5799999999999999999      7999999999877766


Q ss_pred             e-c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 R-F--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~-~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      . +  |.+.|+++.|+|||+++++++.|+.+|
T Consensus       445 ~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~  476 (480)
T KOG0271|consen  445 QDLPGHADEVFAVDWSPDGQRVASGGKDKVLR  476 (480)
T ss_pred             ccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence            5 3  367999999999999999999998664

>KOG2315|consensus

Probab=99.75  E-value=4.2e-18  Score=141.86  Aligned_cols=96  Identities=22%  Similarity=0.441  Sum_probs=88.7

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      +.|||.|++|+.|||+ ..|.|+|||+.+.+++.++.....+-+.|+|||+||+|+++.+|++.||+++||+++|.+++.
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~  396 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE  396 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence            4699999999999998 789999999999999999988889999999999999999999999999999999999999998


Q ss_pred             ccCC-cEEEEEEeeCCCe
Q psy5876          80 FNSP-TFCQLRWRPRPAS   96 (143)
Q Consensus        80 ~~~~-~v~~l~wsP~~~~   96 (143)
                      .... .++.+.|+|-...
T Consensus       397 ~~f~sEL~qv~W~P~~~~  414 (566)
T KOG2315|consen  397 KMFKSELLQVEWRPFNDK  414 (566)
T ss_pred             hhhhHhHhheeeeecCCc
Confidence            7655 7999999988765

>KOG0263|consensus

Probab=99.74  E-value=6e-18  Score=144.79  Aligned_cols=99  Identities=16%  Similarity=0.304  Sum_probs=87.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|.||+.|+|+|+  .|.+||+||+.+|..+..|  |..+|++++|||+|+|||+|+      .|+.|+|||+. |+++
T Consensus       541 v~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~------ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  541 VSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD------EDGLIKIWDLANGSLV  612 (707)
T ss_pred             EEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc------cCCcEEEEEcCCCcch
Confidence            47999999999998  6999999999998766554  557899999999999999999      69999999995 6666


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  |.+.|+++.|+++|..||+++.|..|+
T Consensus       613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             hhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence            543  578999999999999999999999887

>KOG0271|consensus

Probab=99.73  E-value=6.3e-18  Score=136.27  Aligned_cols=99  Identities=19%  Similarity=0.373  Sum_probs=84.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|||+|++||+|+  .|.++||||.++..++.+.  |.+.|.+++|||||+.||+|+      .|+.|++||. .|+++
T Consensus       121 ~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~------~dg~I~lwdpktg~~~  192 (480)
T KOG0271|consen  121 VQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS------KDGSIRLWDPKTGQQI  192 (480)
T ss_pred             EEecCCCceEEecC--CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc------cCCeEEEecCCCCCcc
Confidence            47999999999998  6999999999887666554  456899999999999999999      7999999998 57766


Q ss_pred             Ee-c--cCCcEEEEEEeeC-----CCeeeecCchhhHH
Q psy5876          78 KR-F--NSPTFCQLRWRPR-----PASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~-~--~~~~v~~l~wsP~-----~~~l~s~s~d~~i~  107 (143)
                      -. +  |...|.+++|.|-     ..+|+|+|.|+.||
T Consensus       193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             cccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            43 3  4678999999764     56899999999887

>KOG0272|consensus

Probab=99.73  E-value=3.9e-18  Score=138.33  Aligned_cols=99  Identities=14%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|.|+|+||+++++  |.+-++||+.+...+  ...|..+|.+|+|.|||..++||+      .|..-+|||+ +|+++
T Consensus       267 VafHPsG~~L~Tasf--D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG------lD~~~RvWDlRtgr~i  338 (459)
T KOG0272|consen  267 VAFHPSGKFLGTASF--DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG------LDSLGRVWDLRTGRCI  338 (459)
T ss_pred             eeecCCCceeeeccc--ccchhhcccccchhhHhhcccccccceeEecCCCceeeccC------ccchhheeecccCcEE
Confidence            589999999999996  899999999987543  344556899999999999999999      7999999999 69987


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  |..+|++++|+|+|..|+|||.|.++|
T Consensus       339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCK  370 (459)
T ss_pred             EEecccccceeeEeECCCceEEeecCCCCcEE
Confidence            654  578999999999999999999999876

>KOG0279|consensus

Probab=99.71  E-value=9.6e-17  Score=124.94  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ..||||++.++++  -|+++++||+.+++....+  |...|.++++|||.+.|+|||      .|+++++|+.-|.+.++
T Consensus        70 ~~s~dg~~alS~s--wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS------rDkTiklwnt~g~ck~t  141 (315)
T KOG0279|consen   70 VLSSDGNFALSAS--WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS------RDKTIKLWNTLGVCKYT  141 (315)
T ss_pred             EEccCCceEEecc--ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC------CcceeeeeeecccEEEE
Confidence            5799999999999  4999999999998877766  345799999999999999999      69999999999998876


Q ss_pred             cc----CCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          80 FN----SPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        80 ~~----~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      ..    .+-|.++.|+|+  .+.|+++|.|+++|
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvK  175 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVK  175 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence            53    457999999999  79999999999998

>KOG0266|consensus

Probab=99.70  E-value=1.6e-16  Score=132.88  Aligned_cols=99  Identities=20%  Similarity=0.366  Sum_probs=87.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC-CCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT-GDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~-~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++|||||++|++++  .|++|+|||+ ..+..+.++  |...|++++|+|+|+.+++|+      .|++|+|||+. |++
T Consensus       209 ~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs------~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  209 VAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS------DDGTVRIWDVRTGEC  280 (456)
T ss_pred             eEECCCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec------CCCcEEEEeccCCeE
Confidence            58999999999999  6999999999 555676665  335799999999999999999      69999999996 677


Q ss_pred             EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+  |...|..++|+|+|..|++++.|+.|+
T Consensus       281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  281 VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             EEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence            7765  577999999999999999999999886

>KOG0272|consensus

Probab=99.70  E-value=3.3e-17  Score=133.02  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=88.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l   77 (143)
                      ++|.|||..+++||  .|..-+|||+.++.++..++  ..+|.+++|||+|.+|||||      .|++++|||+.++ ++
T Consensus       309 iaf~~DGSL~~tGG--lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs------~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  309 IAFQPDGSLAATGG--LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS------SDNTCKVWDLRMRSEL  380 (459)
T ss_pred             eEecCCCceeeccC--ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC------CCCcEEEeeecccccc
Confidence            58999999999999  58999999999999988764  35899999999999999999      6999999999765 56


Q ss_pred             Eec--cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      +..  |.+.|..+.|+| -|..|+|+|.|.+++
T Consensus       381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k  413 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK  413 (459)
T ss_pred             eecccccchhhheEecccCCeEEEEcccCccee
Confidence            665  478999999999 789999999999987

>KOG0645|consensus

Probab=99.70  E-value=1.7e-16  Score=123.20  Aligned_cols=99  Identities=18%  Similarity=0.401  Sum_probs=85.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g   74 (143)
                      ++|||.|++||+|+|  |+++.||.-.  +++++.+++.  ..|.+++||++|+||||||      .|+.+.||.++  +
T Consensus        67 vAwsp~g~~La~aSF--D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS------RDKSVWiWe~dedd  138 (312)
T KOG0645|consen   67 VAWSPHGRYLASASF--DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS------RDKSVWIWEIDEDD  138 (312)
T ss_pred             eeecCCCcEEEEeec--cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee------CCCeEEEEEecCCC
Confidence            689999999999996  8999999966  5678877653  5799999999999999999      69999999996  2


Q ss_pred             c--EEE--eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 K--IIK--RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~--~l~--~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  ++.  +.|...|..+.|+|.-..|+|+|.|.+||
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence            2  222  23567899999999999999999999996

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=9e-16  Score=115.29  Aligned_cols=98  Identities=13%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             CeEecCCCEEEEE-ecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLA-ELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~-~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|||+|+.+|+. |. .++.|.|||++ ++.+..++...++.|.|||+|++||+++..   ...+.+.+||.+ .+.+.
T Consensus        65 ~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~  139 (194)
T PF08662_consen   65 VAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKIS  139 (194)
T ss_pred             EEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEee
Confidence            5899999998765 32 46799999997 677777776788999999999999999831   023569999996 56777


Q ss_pred             eccCCcEEEEEEeeCCCeeeecCch
Q psy5876          79 RFNSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        79 ~~~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +.....+..++|+|+|++++++...
T Consensus       140 ~~~~~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  140 TFEHSDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             ccccCcEEEEEEcCCCCEEEEEEec
Confidence            7666678999999999999998754

>PTZ00421 coronin; Provisional

Probab=99.65  E-value=1.7e-15  Score=128.03  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCce-------EEeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFS-------VMNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~-------~~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|+| |+++||+|+  .||+|++||+.+..       .+..+  |...|.+++|+|++ .+|++++      .|+.|+|
T Consensus        81 v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs------~DgtVrI  152 (493)
T PTZ00421         81 VAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG------ADMVVNV  152 (493)
T ss_pred             EEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe------CCCEEEE
Confidence            57999 899999999  69999999987542       23333  33579999999986 6899999      6999999


Q ss_pred             Eeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||+. |+.+...  +...|.+++|+|+|..|++++.|++|+
T Consensus       153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~Ir  193 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN  193 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEE
Confidence            9995 6666554  467899999999999999999999886

>KOG0645|consensus

Probab=99.64  E-value=2e-15  Score=117.32  Aligned_cols=98  Identities=14%  Similarity=0.310  Sum_probs=82.4

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCC---ceEEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGD---FSVMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~---~~~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|+|- |..||+||  .|..|++|++..   ..+....   |...|.+++|||.|+|||+||      .|.++.||.-.
T Consensus        20 ~awhp~~g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS------FD~t~~Iw~k~   91 (312)
T KOG0645|consen   20 VAWHPGKGVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS------FDATVVIWKKE   91 (312)
T ss_pred             EEeccCCceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee------ccceEEEeecC
Confidence            589999 99999999  699999999884   4554433   345799999999999999999      79999999874


Q ss_pred             -Cc--EEEec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          74 -GK--IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        74 -g~--~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                       |.  ++...  |.+.|.+++|+++|.+|+|++.|+.+
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV  129 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV  129 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence             33  55544  57899999999999999999999876

>KOG0293|consensus

Probab=99.64  E-value=5.9e-16  Score=125.89  Aligned_cols=99  Identities=13%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC---ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD---FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~---~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      +.|||||+|||+|+  .|.+.-||++..   .++.++.  ++.+|.-|.||||.|||++|+      .|..+.+||++ |
T Consensus       230 l~FS~nGkyLAsaS--kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg------~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  230 LQFSHNGKYLASAS--KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG------FDEVLSLWDVDTG  301 (519)
T ss_pred             EEEcCCCeeEeecc--CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC------chHheeeccCCcc
Confidence            47999999999999  699999999652   3445554  457899999999999999999      57789999995 7


Q ss_pred             cEEEecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRFN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.+...   ...+.+.+|-|||..+++|+.|.+|-
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            7776654   35789999999999999999987653

>KOG0266|consensus

Probab=99.64  E-value=2.2e-15  Score=126.01  Aligned_cols=99  Identities=17%  Similarity=0.337  Sum_probs=85.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK--   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~--   75 (143)
                      ++|+|+|++|++|+  .|++|+|||+.+++++..+.  ...|+.++|+|||++|++++      .|+.++|||+. |.  
T Consensus       252 ~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s------~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  252 VAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS------YDGTIRVWDLETGSKL  323 (456)
T ss_pred             EEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC------CCccEEEEECCCCcee
Confidence            47999999999999  59999999999998887763  45899999999999999998      69999999995 55  


Q ss_pred             EEEecc---CC-cEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRFN---SP-TFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~~---~~-~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++....   .. .+..+.|+|+|..++++..|+.++
T Consensus       324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence            233332   23 699999999999999999998887

>KOG0275|consensus

Probab=99.62  E-value=1.9e-16  Score=126.07  Aligned_cols=105  Identities=16%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      .|||||+||++|+  .||-|++||.-+|++-.-.          ....|.+++||.|...+|+|+      .|+.|++|.
T Consensus       220 ~FSPDgqyLvsgS--vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs------qDGkIKvWr  291 (508)
T KOG0275|consen  220 RFSPDGQYLVSGS--VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS------QDGKIKVWR  291 (508)
T ss_pred             eeCCCCceEeecc--ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC------cCCcEEEEE
Confidence            6999999999999  6999999998877653211          124799999999999999999      699999999


Q ss_pred             e-cCcEEEec---cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876          72 F-QGKIIKRF---NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT  114 (143)
Q Consensus        72 ~-~g~~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~  114 (143)
                      + +|.|++++   |...|.++.|+.|+..++|++-|.++|       |.+|++-
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr  345 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR  345 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence            9 59999875   467999999999999999999999988       6666554

>KOG0293|consensus

Probab=99.62  E-value=5.6e-16  Score=126.02  Aligned_cols=99  Identities=15%  Similarity=0.258  Sum_probs=88.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |.||||.+||++|++  +..+.+||+.+|.+...+++   ..+++++|-|||..+++|+      .|.++..||.+|+.+
T Consensus       275 i~wSPDdryLlaCg~--~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs------~dr~i~~wdlDgn~~  346 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGF--DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS------PDRTIIMWDLDGNIL  346 (519)
T ss_pred             EEECCCCCeEEecCc--hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC------CCCcEEEecCCcchh
Confidence            579999999999995  67799999999988776643   5789999999999999999      599999999999999


Q ss_pred             Eecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+.   ...|++++.+|||+++++...|+.|+
T Consensus       347 ~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~  379 (519)
T KOG0293|consen  347 GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR  379 (519)
T ss_pred             hcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence            8876   45699999999999999999998885

>KOG0284|consensus

Probab=99.60  E-value=2.2e-15  Score=122.15  Aligned_cols=99  Identities=17%  Similarity=0.303  Sum_probs=87.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|||+...+++|+  +||+|+|||....  +.+...|+-.|.++.|+|.-..||++|      .|+.|++||. .|.+|
T Consensus       186 lafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs------kDnlVKlWDprSg~cl  257 (464)
T KOG0284|consen  186 LAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS------KDNLVKLWDPRSGSCL  257 (464)
T ss_pred             eccCCCCceeEEec--CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc------CCceeEeecCCCcchh
Confidence            58999999999999  7999999997643  344566666899999999999999999      6999999999 59999


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.+  .+.|..+.|+|++++|+|+|.|+.+|
T Consensus       258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k  289 (464)
T KOG0284|consen  258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK  289 (464)
T ss_pred             hhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence            8764  78999999999999999999999764

>PTZ00420 coronin; Provisional

Probab=99.60  E-value=1e-14  Score=124.83  Aligned_cols=99  Identities=10%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCce--------EEee--eccCceEEEEECCCCCEE-EEeecCcceecCCcEE
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFS--------VMNA--AEHHQATDVEWDPTGRYV-MSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~--------~~~~--~~~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~   68 (143)
                      ++|+|+ +++||+|+  .||+|++||+.+..        .+..  .|...|.+++|+|++.++ |+++      .|+.++
T Consensus        80 lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIr  151 (568)
T PTZ00420         80 LQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG------FDSFVN  151 (568)
T ss_pred             EEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe------CCCeEE
Confidence            579997 89999999  69999999987531        1122  233579999999999875 6777      699999


Q ss_pred             EEeec-CcEEEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          69 QWSFQ-GKIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        69 iW~~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |||+. ++.+... +...|.+++|+|+|..|++++.|+.|+
T Consensus       152 IWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~Ir  192 (568)
T PTZ00420        152 IWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMH  192 (568)
T ss_pred             EEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEE
Confidence            99995 6655544 356899999999999999999888776

>KOG0263|consensus

Probab=99.59  E-value=3.3e-15  Score=128.10  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=87.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      +.|+|.|=|+|+|+  .|++.++|..+..+.+..+  |...|.++.|+|++.|+||||      .|.++++||+ +|..+
T Consensus       499 V~F~P~GyYFatas--~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS------sD~tVRlWDv~~G~~V  570 (707)
T KOG0263|consen  499 VQFAPRGYYFATAS--HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS------SDRTVRLWDVSTGNSV  570 (707)
T ss_pred             EEecCCceEEEecC--CCceeeeeecccCCchhhhcccccccceEEECCcccccccCC------CCceEEEEEcCCCcEE
Confidence            47999999999998  6999999999876655443  446899999999999999999      6999999999 68877


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +.+  |..+|.+++|+|+|.+|+||++|+.|+
T Consensus       571 RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  571 RIFTGHKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             EEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence            655  688999999999999999999999886

>KOG0273|consensus

Probab=99.56  E-value=1.8e-14  Score=118.53  Aligned_cols=99  Identities=18%  Similarity=0.343  Sum_probs=84.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC---------EEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR---------YVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~---------~lat~s~~~~~~~D~~i~i   69 (143)
                      |.|.|.|..|++++  +|++++||..........++  ...|+.+.|||+|.         .+++++      .|+++++
T Consensus       365 lk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas------~dstV~l  436 (524)
T KOG0273|consen  365 LKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS------FDSTVKL  436 (524)
T ss_pred             EEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee------cCCeEEE
Confidence            46999999999999  79999999987655555443  35799999999865         577777      6999999


Q ss_pred             Eee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||+ .|.+++.+  |..+|++++|+|+|.+|++|+-|+-|.
T Consensus       437 wdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~  477 (524)
T KOG0273|consen  437 WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH  477 (524)
T ss_pred             EEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence            999 59999876  578999999999999999999998765

>KOG1273|consensus

Probab=99.56  E-value=1.2e-14  Score=115.24  Aligned_cols=92  Identities=17%  Similarity=0.368  Sum_probs=78.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      +.|||.|.+||+|.  .||.|.|||..|+..-..+  |-.+|++++||||||.|+|+|      .|+.+++||+ .|.++
T Consensus        29 ~~Fs~~G~~lAvGc--~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS------~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGC--ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS------RDWSIKLWDLLKGSPL  100 (405)
T ss_pred             EEeccCcceeeeec--cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec------CCceeEEEeccCCCce
Confidence            46999999999998  6999999999987643333  346899999999999999999      6999999999 69999


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeec
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      ++.. ..+|+...|+|.....+-+
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va  124 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVA  124 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEE
Confidence            8876 6799999999987654433

>KOG0291|consensus

Probab=99.55  E-value=2.8e-14  Score=122.67  Aligned_cols=105  Identities=17%  Similarity=0.270  Sum_probs=86.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcc------------------
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWK------------------   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~------------------   60 (143)
                      +++||||++||+|+  .||+|++||+.++-|+.++. | ..|+.+.|+.+|+.++++|-+.+                  
T Consensus       356 l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P  433 (893)
T KOG0291|consen  356 LAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP  433 (893)
T ss_pred             EEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence            47899999999999  79999999999999999883 3 57999999999999999984210                  


Q ss_pred             -------eecC------------C-cEEEEeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 -------TKAD------------T-GYWQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 -------~~~D------------~-~i~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                             ...|            . .|.+|+++ |+++...  |..+|.+++|+|+|..|+|+|-|++||
T Consensus       434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR  503 (893)
T ss_pred             CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence                   0111            1 35678884 7877654  577999999999999999999999998

>KOG0273|consensus

Probab=99.55  E-value=4.4e-14  Score=116.25  Aligned_cols=98  Identities=20%  Similarity=0.382  Sum_probs=82.0

Q ss_pred             CeEecCCC---------EEEEEecCCCCeEEEEECCCceEEeee-c-cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGT---------HIVLAELRDTGSLEFVDTGDFSVMNAA-E-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~---------~las~~~~~dg~i~iWd~~~~~~~~~~-~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      +.|||+|.         .|+++++  |++|++||+..+.++.++ . ..+|++++|||+|+|+|+|+      .|+.|.|
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~--dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs------~dg~V~i  478 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASF--DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS------LDGCVHI  478 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeec--CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC------CCCeeEe
Confidence            46888764         7888884  899999999999999987 3 35899999999999999999      6999999


Q ss_pred             Eeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          70 WSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        70 W~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      |+.+ |++.+... .+.|+.++|+-+|..|..+-.|+.+
T Consensus       479 ws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  479 WSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             ccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence            9995 77777766 5678999999999877655445443

>KOG0295|consensus

Probab=99.55  E-value=5.1e-14  Score=112.98  Aligned_cols=93  Identities=13%  Similarity=0.259  Sum_probs=82.0

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc--
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN--   81 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~--   81 (143)
                      |+++++++  .|++|++||+.++.++.++  +...|.+++|+|-|+||+++.      .|+++++||++ +++++.+.  
T Consensus       304 ~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca------DDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  304 GQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA------DDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             ccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe------cCCcEEEEEeccceeeeccCCC
Confidence            56999998  6999999999999999886  336799999999999999999      59999999996 66777654  


Q ss_pred             CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          82 SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        82 ~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...|.++.|+-+-++++||+-|++++
T Consensus       376 ~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  376 EHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             cceeEEEecCCCCceEEeccccceee
Confidence            66799999999999999999998775

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.54  E-value=1.7e-14  Score=119.66  Aligned_cols=134  Identities=21%  Similarity=0.359  Sum_probs=113.8

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECC-CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTG-DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~-~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      +.|||.+++++.+||+ ..|.+.|||.. ..+++.++....++-+.|||||+|+.+....++.+.|+.++|||+.|..+.
T Consensus       321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            3589999999999997 67999999965 455666777778999999999999999998888889999999999886543


Q ss_pred             e-----cc-----------------------------------CCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhcc
Q psy5876          79 R-----FN-----------------------------------SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFE  118 (143)
Q Consensus        79 ~-----~~-----------------------------------~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e  118 (143)
                      .     +.                                   ..+...++|+|.++.++|.+..++++++++++...||
T Consensus       401 el~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~~~~K~~~~~~~~~~~~~  480 (561)
T COG5354         401 ELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIESAKKYVKPSRHRFVPFE  480 (561)
T ss_pred             hhhhccccCCcccceeeccCCCCccccccccccccccccChhhhcccceeEEecCCCccCChhhhhhcccchhhhccccc
Confidence            1     00                                   1134568999999999999999999999999999999


Q ss_pred             HHhHHHHhhcccccee
Q psy5876         119 AKDRQRMNKASKYADL  134 (143)
Q Consensus       119 ~~~~~~~~~~~~~~~~  134 (143)
                      ..+.+++++|.|+...
T Consensus       481 k~~~~~~dsa~r~s~p  496 (561)
T COG5354         481 KAVIMEADSANRSSAP  496 (561)
T ss_pred             cccccccccccccccc
Confidence            9999999999887654

>KOG0283|consensus

Probab=99.53  E-value=2.2e-14  Score=123.59  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=87.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-ceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-QATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |+||-++ +|++++  .|.||++|++..-+++..|.|. .|++|+|+| |.+||++||      .|+.++||++..+.+.
T Consensus       375 lSWSKn~-fLLSSS--MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS------LD~KvRiWsI~d~~Vv  445 (712)
T KOG0283|consen  375 LSWSKNN-FLLSSS--MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS------LDGKVRLWSISDKKVV  445 (712)
T ss_pred             cccccCC-eeEecc--ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc------cccceEEeecCcCeeE
Confidence            5798875 888988  5999999999999999999775 699999999 889999999      8999999999888877


Q ss_pred             ecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.  ...|.+++|+|||+..+-|+..+..+
T Consensus       446 ~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  446 DWNDLRDLITAVCYSPDGKGAVIGTFNGYCR  476 (712)
T ss_pred             eehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence            664  67899999999999999998888665

>KOG2394|consensus

Probab=99.53  E-value=1.8e-14  Score=120.19  Aligned_cols=92  Identities=20%  Similarity=0.362  Sum_probs=75.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||||++||+.+  .||.+||+|.++.+++..++.  ....+++|||||+||+||+      .|.-|.||++. ++.+
T Consensus       296 f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------EDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  296 FAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------EDDLVTVWSFEERRVV  367 (636)
T ss_pred             eeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------CcceEEEEEeccceEE
Confidence            47999999999999  799999999999877655442  4789999999999999999      79999999995 6666


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ..-  |...|..++|-|   +.-+.++.
T Consensus       368 ARGqGHkSWVs~VaFDp---ytt~~ee~  392 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDP---YTTSTEEW  392 (636)
T ss_pred             EeccccccceeeEeecc---cccccccc
Confidence            654  477899999988   44444433

>KOG0279|consensus

Probab=99.50  E-value=1.7e-13  Score=106.96  Aligned_cols=95  Identities=16%  Similarity=0.182  Sum_probs=82.2

Q ss_pred             CeEecC--CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMR--GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPd--G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      +.|||+  ..+|++++  -|++|++||+++.++...+.  .+.++.+++||||..+++|+      .|+.+.+||+ +|+
T Consensus       154 vrfsP~~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg------kdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG------KDGEAMLWDLNEGK  225 (315)
T ss_pred             EEEcCCCCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC------CCceEEEEEccCCc
Confidence            479999  67999999  59999999999988777653  35799999999999999999      7999999999 588


Q ss_pred             EEEecc-CCcEEEEEEeeCCCeeeecCch
Q psy5876          76 IIKRFN-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        76 ~l~~~~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .++.+. ...|.+++|+|+-..|..+-..
T Consensus       226 ~lysl~a~~~v~sl~fspnrywL~~at~~  254 (315)
T KOG0279|consen  226 NLYSLEAFDIVNSLCFSPNRYWLCAATAT  254 (315)
T ss_pred             eeEeccCCCeEeeEEecCCceeEeeccCC
Confidence            888764 7899999999999988876544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.50  E-value=4e-13  Score=99.68  Aligned_cols=99  Identities=18%  Similarity=0.416  Sum_probs=83.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +.|+|+|+.|++++  .+|.|++||+.+++.+..+ .+ ..+.+++|+|++.++++++      .|+.+++|++. ++.+
T Consensus       183 ~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~  254 (289)
T cd00200         183 VAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS------EDGTIRVWDLRTGECV  254 (289)
T ss_pred             EEECCCcCEEEEec--CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc------CCCcEEEEEcCCceeE
Confidence            47999999999988  5899999999988777765 33 4799999999999999888      58999999996 6666


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...+.+++|+|+++.|++++.|+.++
T Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             EEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence            554  356799999999999999999988663

>PTZ00421 coronin; Provisional

Probab=99.49  E-value=3.4e-13  Score=114.02  Aligned_cols=99  Identities=14%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      ++|+|++ ++|++++  .|++|+|||+.+++.+..+.  ...|.+++|+|||++|++++      .|+.++|||+ +|+.
T Consensus       131 l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        131 VSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGTI  202 (493)
T ss_pred             EEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCcE
Confidence            4799986 6899998  59999999999988776653  35799999999999999999      6999999999 5777


Q ss_pred             EEecc--C-CcEEEEEEeeCCCeeeecC----chhhHH
Q psy5876          77 IKRFN--S-PTFCQLRWRPRPASLLSKE----QVDKIK  107 (143)
Q Consensus        77 l~~~~--~-~~v~~l~wsP~~~~l~s~s----~d~~i~  107 (143)
                      +....  . ..+..+.|.|++..+++.+    .|++|+
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            76543  2 2355788999999888764    355554

>KOG1407|consensus

Probab=99.49  E-value=8.1e-14  Score=108.09  Aligned_cols=97  Identities=10%  Similarity=0.139  Sum_probs=83.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      |.|+|+|+|+|+|+  .|..+.+||++..-+...+.  .-+|..++||-||+|||+||      .|.-|-|=++ +|..+
T Consensus       195 I~f~p~GryfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS------EDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  195 IEFDPDGRYFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS------EDHFIDIAEVETGDRV  266 (313)
T ss_pred             EEECCCCceEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC------ccceEEeEecccCCeE
Confidence            57999999999999  69999999999876655543  35899999999999999999      6888888888 69999


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeecCchhh
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .+.+ ..+-+.++|+|.-+.|+=+.+|+.
T Consensus       267 ~eI~~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  267 WEIPCEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             EEeeccCCceeEEecCCCceeeEEecCCC
Confidence            8876 678999999999999997776654

>KOG0973|consensus

Probab=99.49  E-value=8.2e-14  Score=122.83  Aligned_cols=99  Identities=15%  Similarity=0.325  Sum_probs=83.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC------------------ceEEeee--ccCceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------------------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~------------------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      +.|||||+|||+|+  +|+.|.||....                  .+.+..+  |...|.+++|+||+.+||++|    
T Consensus        75 VR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s----  148 (942)
T KOG0973|consen   75 VRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS----  148 (942)
T ss_pred             EEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec----
Confidence            47999999999999  799999999661                  1233333  345799999999999999999    


Q ss_pred             eecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 TKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 ~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .|+.|.||+. +.+++...  |...|..+.|-|-|++++|.++|++|+
T Consensus       149 --~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtik  196 (942)
T KOG0973|consen  149 --LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLK  196 (942)
T ss_pred             --ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEE
Confidence              7999999998 46666554  577899999999999999999999987

>KOG0318|consensus

Probab=99.49  E-value=3.1e-13  Score=112.64  Aligned_cols=96  Identities=15%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      +.|||||.++|++|  .||++.+||-.+++.+..++    | ..|..++||||++.|+|+|      .|++++|||+. +
T Consensus       196 VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S------aDkt~KIWdVs~~  267 (603)
T KOG0318|consen  196 VRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS------ADKTIKIWDVSTN  267 (603)
T ss_pred             EEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec------CCceEEEEEeecc
Confidence            47999999999999  69999999999999888764    3 4799999999999999999      79999999995 7


Q ss_pred             cEEEecc-----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          75 KIIKRFN-----SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        75 ~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +++.++.     .++...+.|.  ...|+|.+-.+.|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~i  302 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTI  302 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEE
Confidence            7777764     2566777888  5578887766655

>KOG0291|consensus

Probab=99.48  E-value=2.5e-13  Score=116.89  Aligned_cols=107  Identities=18%  Similarity=0.327  Sum_probs=90.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+..|.+||.|+. .=|.+-+|+-.+..-+.+  .|...++++++||||++||||+      .|+.|+|||.+ |-|+
T Consensus       313 ~~~N~tGDWiA~g~~-klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~------eDgKVKvWn~~SgfC~  385 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCS-KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA------EDGKVKVWNTQSGFCF  385 (893)
T ss_pred             EEecccCCEEEEcCC-ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc------CCCcEEEEeccCceEE
Confidence            468889999999985 357999999665443333  3446799999999999999999      69999999996 7788


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT  114 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~  114 (143)
                      .++  |...|..+.|+-+|+.|+|.|-|++||       +|+|+|+
T Consensus       386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            775  578999999999999999999999999       7777776

>KOG0315|consensus

Probab=99.47  E-value=5e-13  Score=103.29  Aligned_cols=98  Identities=8%  Similarity=0.079  Sum_probs=79.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC------ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD------FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~------~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ...|||++|+.+.  ..|++.+|++-+      .+.+.++.  ...+..+.+|||++||||+|      .|++++||+.+
T Consensus       174 ~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s------sdktv~iwn~~  245 (311)
T KOG0315|consen  174 TVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS------SDKTVKIWNTD  245 (311)
T ss_pred             EEcCCCcEEEEec--CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec------CCceEEEEecC
Confidence            4569999999998  579999999653      33444443  24699999999999999999      69999999998


Q ss_pred             CcEE----EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKII----KRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l----~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +-..    .+.+..-+++.+||-||++|+|+|.|..+|
T Consensus       246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r  283 (311)
T KOG0315|consen  246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR  283 (311)
T ss_pred             CceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence            7621    122356899999999999999999998876

>KOG1407|consensus

Probab=99.47  E-value=1.8e-13  Score=106.12  Aligned_cols=99  Identities=19%  Similarity=0.315  Sum_probs=76.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-----------------------------------------ceEEeeec-c-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-----------------------------------------FSVMNAAE-H-   37 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-----------------------------------------~~~~~~~~-~-   37 (143)
                      +.|||+|++++.++  .|..|.+.|..+                                         .+.+.+.. | 
T Consensus       112 i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  112 ITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             EEEcCCCCEEEEec--CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            47999999999998  466777777541                                         11122221 2 


Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+.+|.|+|+|||||+|+      .|-.+-+||++.- +++.+.  .-+|..++|+-+|++|+|+|+|..|-
T Consensus       190 snCicI~f~p~GryfA~Gs------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGS------ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID  256 (313)
T ss_pred             cceEEEEECCCCceEeecc------ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence            3688999999999999999      6999999999754 444443  45899999999999999999998653

>KOG0318|consensus

Probab=99.47  E-value=4e-13  Score=111.93  Aligned_cols=98  Identities=14%  Similarity=0.307  Sum_probs=81.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE----eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      ++.+|+|+++|.|+  .||.|++|.+...++.    ...+...++++++||||.|||++.      ..+.+.+||+..+.
T Consensus       449 vAv~~~~~~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D------a~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD------ASRKVVLYDVASRE  520 (603)
T ss_pred             EEEcCCCCEEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec------cCCcEEEEEcccCc
Confidence            47899999999999  7999999998864432    222346899999999999999998      57789999997665


Q ss_pred             EEe----ccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          77 IKR----FNSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        77 l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .+.    +|...|.+++|+|+.++++|||.|-.|
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence            542    368899999999999999999988755

>KOG0286|consensus

Probab=99.47  E-value=4.1e-13  Score=105.49  Aligned_cols=101  Identities=13%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC-CCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      .|-+|++ |++++  .|.++-+||+++++++..++.  ..|.+++.+| +++.|++|+      .|+..++||+ .|.+.
T Consensus       152 ~f~dD~~-ilT~S--GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~------cD~~aklWD~R~~~c~  222 (343)
T KOG0286|consen  152 RFLDDNH-ILTGS--GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG------CDKSAKLWDVRSGQCV  222 (343)
T ss_pred             EEcCCCc-eEecC--CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc------cccceeeeeccCccee
Confidence            3556654 45554  499999999999999888753  4699999999 999999999      5999999999 58888


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCchhhHH-hhhh
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-KSLK  111 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~  111 (143)
                      +.+.  ...|+++.|.|+|..++|||+|++.| .++|
T Consensus       223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            8764  56899999999999999999999987 4444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.46  E-value=6.2e-13  Score=117.53  Aligned_cols=99  Identities=10%  Similarity=0.220  Sum_probs=79.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----e----EEeee-ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----S----VMNAA-EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~----~~~~~-~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|+|+|++||+|+  .||+|+|||..+.    .    ..... .+..+.+++|+| ++++||+++      .|+.|++|
T Consensus       489 i~fs~dg~~latgg--~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~------~Dg~v~lW  560 (793)
T PLN00181        489 IGFDRDGEFFATAG--VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN------FEGVVQVW  560 (793)
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe------CCCeEEEE
Confidence            57999999999999  6999999997531    1    11122 245789999997 478999999      69999999


Q ss_pred             eec-CcEEEec--cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          71 SFQ-GKIIKRF--NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        71 ~~~-g~~l~~~--~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      |+. ++.+...  |...|++++|+| ++..|+|++.|++|+
T Consensus       561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~  601 (793)
T PLN00181        561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK  601 (793)
T ss_pred             ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence            995 6666554  567899999997 788999999999887

>PTZ00420 coronin; Provisional

Probab=99.45  E-value=1.4e-12  Score=111.85  Aligned_cols=96  Identities=8%  Similarity=0.023  Sum_probs=75.4

Q ss_pred             CeEecCCCEE-EEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHI-VLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~l-as~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|..+ ++++  .||+|+|||+.+++.+.... +..|.+++|+|||++|++++      .|+.++|||+. |+.+
T Consensus       131 Vaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s------~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        131 IDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC------VGKHMHIIDPRKQEIA  202 (568)
T ss_pred             EEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe------cCCEEEEEECCCCcEE
Confidence            5799999875 6777  59999999999887665553 35799999999999999988      69999999995 7666


Q ss_pred             Eec--cCCc-----EEEEEEeeCCCeeeecCchh
Q psy5876          78 KRF--NSPT-----FCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        78 ~~~--~~~~-----v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ...  |...     ++...|+|++..|+|++.++
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~  236 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK  236 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence            654  3332     34445679999999987664

>KOG0319|consensus

Probab=99.45  E-value=3.7e-13  Score=115.38  Aligned_cols=99  Identities=11%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +.|||+.+.+|+++  .|++|+||.++++.++.++++  ..|..++|-.+|++|++|+      .|+-++||++. +.|+
T Consensus       511 V~Fs~~dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~------adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  511 VSFSKNDQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG------ADGLIKLWNIKTNECE  582 (775)
T ss_pred             EEeccccceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc------CCCcEEEEeccchhhh
Confidence            57999999999998  799999999999999999873  3689999999999999999      69999999994 7788


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  |.+.||+++-+|+..+++||+.|+.|.
T Consensus       583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             hhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence            775  588999999999999999999998765

>KOG0973|consensus

Probab=99.45  E-value=2.7e-13  Score=119.59  Aligned_cols=92  Identities=22%  Similarity=0.383  Sum_probs=76.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l   77 (143)
                      +.||||+.+||+++  .|++|.|||..+++++..+  |+..|..++|+|-|+||||-+      .|++++||.... .+.
T Consensus       135 v~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs------dDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  135 VNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS------DDRTLKVWRTSDWGIE  206 (942)
T ss_pred             eccCCCccEEEEec--ccceEEEEccccceeeeeeecccccccceEECCccCeeeeec------CCceEEEEEcccceee
Confidence            57999999999999  5999999999999887765  345799999999999999999      599999999743 222


Q ss_pred             Eec--c------CCcEEEEEEeeCCCeeeec
Q psy5876          78 KRF--N------SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        78 ~~~--~------~~~v~~l~wsP~~~~l~s~  100 (143)
                      +..  +      ...+..+.|||||++|++.
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecch
Confidence            221  1      4578999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.45  E-value=1.4e-12  Score=96.71  Aligned_cols=99  Identities=16%  Similarity=0.311  Sum_probs=80.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l   77 (143)
                      ++|+|+|++|++++  .+|.+++||..+++.....  +...+..+.|+|++++|++++      .|+.+++|+++. +.+
T Consensus        15 ~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~~~~~~~~~   86 (289)
T cd00200          15 VAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS------SDKTIRLWDLETGECV   86 (289)
T ss_pred             EEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc------CCCeEEEEEcCcccce
Confidence            47999999999998  5899999999877654443  335688999999999999999      599999999964 555


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...+.++.|+|+++.+++++.++.++
T Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  118 (289)
T cd00200          87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK  118 (289)
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence            544  355899999999999999988677654

>KOG0283|consensus

Probab=99.44  E-value=1.8e-13  Score=118.05  Aligned_cols=98  Identities=15%  Similarity=0.286  Sum_probs=78.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC------------------------------------------------c---
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------------------------------------------------F---   29 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~------------------------------------------------~---   29 (143)
                      +.|||||+|||+||  .||.|+||.+-.                                                .   
T Consensus       273 mKFS~DGKyLAsaG--eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~  350 (712)
T KOG0283|consen  273 MKFSHDGKYLASAG--EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLL  350 (712)
T ss_pred             EEeCCCCceeeecC--CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccC
Confidence            46999999999999  799999998532                                                0   


Q ss_pred             ---------eEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-cCCcEEEEEEeeCC-C
Q psy5876          30 ---------SVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-NSPTFCQLRWRPRP-A   95 (143)
Q Consensus        30 ---------~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-~~~~v~~l~wsP~~-~   95 (143)
                               +++..  .|...|.+++||-++ +|+++|      +|+++++|++. ..+|..+ |.+-|++++|+|.. .
T Consensus       351 p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  351 PLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CCccccccccchhhhhccchhheecccccCC-eeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence                     00111  122468999999765 889999      89999999995 5688776 57899999999976 6


Q ss_pred             eeeecCchhhHH
Q psy5876          96 SLLSKEQVDKIK  107 (143)
Q Consensus        96 ~l~s~s~d~~i~  107 (143)
                      +++||+-|+++|
T Consensus       424 yFiSGSLD~KvR  435 (712)
T KOG0283|consen  424 YFISGSLDGKVR  435 (712)
T ss_pred             cEeecccccceE
Confidence            899999999998

>KOG0772|consensus

Probab=99.43  E-value=3.9e-13  Score=111.97  Aligned_cols=98  Identities=16%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             eEecCCC-EEEEEecCCCCeEEEEECCCce----EEeeec-c---CceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFS----VMNAAE-H---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~----~~~~~~-~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      +|.|+.+ .+++++  .||++||||+++.+    .+.+-. .   -++++|+|+|||+.||+|.      .|+.|.+|+.
T Consensus       275 ~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc------~DGSIQ~W~~  346 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC------LDGSIQIWDK  346 (641)
T ss_pred             ccccCcccceEEec--CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc------cCCceeeeec
Confidence            6899866 455666  59999999988533    222211 1   2689999999999999999      6999999997


Q ss_pred             cCc------EEEeccC--CcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          73 QGK------IIKRFNS--PTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g~------~l~~~~~--~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      -+.      ++...|.  ..|.++.||+||++|+|-+.|.++|
T Consensus       347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence            432      3334453  3899999999999999999999887

>KOG0286|consensus

Probab=99.43  E-value=1.7e-12  Score=101.98  Aligned_cols=99  Identities=14%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      |+|.|+|.-+++|+  +|+++|+||+...+.+..+++    .+|++++||-.||+|.+|.      .|.++.+||. .|+
T Consensus       235 v~ffP~G~afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy------~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  235 VRFFPSGDAFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY------DDFTCNVWDTLKGE  306 (343)
T ss_pred             EEEccCCCeeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee------cCCceeEeeccccc
Confidence            57999999999999  799999999998666665543    4799999999999999998      5999999998 677


Q ss_pred             EEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+-.  -|.++|.++..+|||..+.|+|=|..+|
T Consensus       307 ~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr  340 (343)
T KOG0286|consen  307 RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR  340 (343)
T ss_pred             eEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence            6554  3688999999999999999999998775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.42  E-value=2.1e-12  Score=114.22  Aligned_cols=99  Identities=13%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|+| ++++||+++  .||+|++||+.+++.+..+.  ...|++++|+| +|.+|+||+      .|+.|++||+. +.
T Consensus       538 l~~~~~~~~~las~~--~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~  609 (793)
T PLN00181        538 ICWNSYIKSQVASSN--FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS------DDGSVKLWSINQGV  609 (793)
T ss_pred             EEeccCCCCEEEEEe--CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCc
Confidence            46776 588999999  59999999999888776653  35799999997 899999999      69999999995 77


Q ss_pred             EEEecc-CCcEEEEEEe-eCCCeeeecCchhhHH
Q psy5876          76 IIKRFN-SPTFCQLRWR-PRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~~-~~~v~~l~ws-P~~~~l~s~s~d~~i~  107 (143)
                      .+.... ...+.++.|+ |+|..|++++.|+.|+
T Consensus       610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        610 SIGTIKTKANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence            666543 4679999995 5799999999998876

>KOG0265|consensus

Probab=99.42  E-value=1e-12  Score=103.44  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      +.|+|+|.+||+||+  |..|.+|++. ..+...  +.|...|..+.|.+||..|++++      .|++++.||+ +|++
T Consensus        53 ~~F~P~gs~~aSgG~--Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g------tDk~v~~wD~~tG~~  124 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGS--DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG------TDKTVRGWDAETGKR  124 (338)
T ss_pred             EEECCCCCeEeecCC--cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec------CCceEEEEeccccee
Confidence            369999999999994  8999999965 333322  34556799999999999999999      5999999999 5999


Q ss_pred             EEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      +++.  +...|+.+.=+-.|+ ++.|+++|+++|
T Consensus       125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k  158 (338)
T KOG0265|consen  125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK  158 (338)
T ss_pred             eehhccccceeeecCccccCCeEEEecCCCceEE
Confidence            8875  466788887655565 555889999987

>KOG0640|consensus

Probab=99.42  E-value=7e-13  Score=105.27  Aligned_cols=121  Identities=17%  Similarity=0.328  Sum_probs=100.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g   74 (143)
                      |+|.|.|.+|++|.  +-.++++||+++.++...-     +...|+++.+|+.|+..+|+|      .|+.|+|||- .+
T Consensus       222 iSfHPsGefllvgT--dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~  293 (430)
T KOG0640|consen  222 ISFHPSGEFLLVGT--DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSN  293 (430)
T ss_pred             EeecCCCceEEEec--CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccH
Confidence            58999999999998  4689999999998886542     235799999999999999999      7999999997 68


Q ss_pred             cEEEec---c-CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhchhccHHhHHHHhhcc
Q psy5876          75 KIIKRF---N-SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTPAFEAKDRQRMNKAS  129 (143)
Q Consensus        75 ~~l~~~---~-~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~~~e~~~~~~~~~~~  129 (143)
                      +|+..+   | ...|++..|..+|++++|.+.|..++       +.+++|+..=-..-++.+..|+
T Consensus       294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv  359 (430)
T KOG0640|consen  294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV  359 (430)
T ss_pred             HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence            888764   3 56899999999999999999999988       7788888654444555555554

>KOG0282|consensus

Probab=99.42  E-value=3.3e-13  Score=111.28  Aligned_cols=99  Identities=17%  Similarity=0.317  Sum_probs=86.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++||++|+.+++++|  |+.|++||++||+++..++. ..++++.|.||+ ..|++|+      .|+.|+.||.. |+.+
T Consensus       264 ~~~s~~g~~fLS~sf--D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~------sd~ki~~wDiRs~kvv  335 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASF--DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG------SDKKIRQWDIRSGKVV  335 (503)
T ss_pred             hhccccCCeeeeeec--ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec------CCCcEEEEeccchHHH
Confidence            579999999999996  89999999999999999875 468999999999 5666666      59999999994 7766


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..  +-..|.++.|.|+|.+.+|.++|+.++
T Consensus       336 qeYd~hLg~i~~i~F~~~g~rFissSDdks~r  367 (503)
T KOG0282|consen  336 QEYDRHLGAILDITFVDEGRRFISSSDDKSVR  367 (503)
T ss_pred             HHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence            664  356899999999999999999999776

>KOG0282|consensus

Probab=99.41  E-value=2.2e-13  Score=112.29  Aligned_cols=99  Identities=15%  Similarity=0.265  Sum_probs=86.3

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCC-ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGD-FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~-~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      +.|.| .|.+|++++  .|+.|+||++-. ++++.++.  ..+|.+++|+++|+.|+|+|      .|..+++||+ +|+
T Consensus       220 i~~fp~~~hLlLS~g--mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s------fD~~lKlwDtETG~  291 (503)
T KOG0282|consen  220 IQWFPKKGHLLLSGG--MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS------FDRFLKLWDTETGQ  291 (503)
T ss_pred             hhhccceeeEEEecC--CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee------cceeeeeeccccce
Confidence            46888 899999999  599999999764 88888874  35799999999999999999      7999999999 699


Q ss_pred             EEEeccC-CcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876          76 IIKRFNS-PTFCQLRWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~~~-~~v~~l~wsP~~-~~l~s~s~d~~i~  107 (143)
                      ++.+++. ..++++.|+|++ +.++.|+.|+.|+
T Consensus       292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~  325 (503)
T KOG0282|consen  292 VLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR  325 (503)
T ss_pred             EEEEEecCCCceeeecCCCCCcEEEEecCCCcEE
Confidence            9998874 578899999999 7788898888876

>KOG0647|consensus

Probab=99.40  E-value=2e-12  Score=101.98  Aligned_cols=99  Identities=14%  Similarity=0.270  Sum_probs=79.0

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCC-ceEEee---eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGD-FSVMNA---AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~-~~~~~~---~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |+||| ...++++++.  ||+||+|+++. +..+-+   .+..++.+++|+-||..+++|+      .|+.+++||+...
T Consensus        33 l~FSP~~~~~~~A~SW--D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~------~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSW--DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG------CDKQAKLWDLASG  104 (347)
T ss_pred             eEeccccCceEEeccc--CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec------cCCceEEEEccCC
Confidence            58999 4555557775  89999999875 443322   1246899999999999999999      5999999999644


Q ss_pred             EEEe--ccCCcEEEEEEeeCCC--eeeecCchhhHH
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPA--SLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~--~l~s~s~d~~i~  107 (143)
                      ++.+  .|..+|..++|-+...  .|+|||=|++||
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence            4443  4688999999988776  899999999998

>KOG0316|consensus

Probab=99.39  E-value=1.6e-12  Score=99.89  Aligned_cols=99  Identities=12%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      +.|+-||+|.+++|  .|.+|++|+...+.+++++.  ...|.+++-+.|+..|++|+      .|+.+.+||+ +|+.+
T Consensus        23 vryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G------gDk~v~vwDV~TGkv~   94 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG------GDKAVQVWDVNTGKVD   94 (307)
T ss_pred             EEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccccccccCC------CCceEEEEEcccCeee
Confidence            36889999999999  69999999999999998863  46899999999999999999      6999999999 59999


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +++.  ...|+.+.|+.....++|++.|.++|
T Consensus        95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r  126 (307)
T KOG0316|consen   95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVR  126 (307)
T ss_pred             eecccccceeeEEEecCcceEEEeccccceeE
Confidence            9875  67899999999999999999999987

>KOG0284|consensus

Probab=99.38  E-value=2.6e-13  Score=110.24  Aligned_cols=99  Identities=15%  Similarity=0.319  Sum_probs=82.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |.|.|+|+.|++|+  ..|.+.+|+..+  ++.+..-|...|.++.||++|.++++|.      .++.|++|+..-.-++
T Consensus       102 v~WtPeGRRLltgs--~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD------~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGS--QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD------KGGMIKYWQPNMNNVK  173 (464)
T ss_pred             EEEcCCCceeEeec--ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC------CCceEEecccchhhhH
Confidence            57999999999999  689999999754  3334333456899999999999999999      6999999999644333


Q ss_pred             e--cc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 R--FN-SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~--~~-~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  .+ ...|.+++|+|....++|+|+|++|+
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik  205 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK  205 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence            2  23 47899999999999999999999997

>KOG0295|consensus

Probab=99.36  E-value=2.7e-12  Score=103.16  Aligned_cols=98  Identities=15%  Similarity=0.254  Sum_probs=82.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCC---------------CEEEEeecCcceecC
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTG---------------RYVMSGVSLWKTKAD   64 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG---------------~~lat~s~~~~~~~D   64 (143)
                      +-+-||+.+|+++  .|.++++|-+.+.++...  .+.++|-+++|.|..               ++++++|      -|
T Consensus       242 ~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S------rD  313 (406)
T KOG0295|consen  242 RVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS------RD  313 (406)
T ss_pred             EecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec------cc
Confidence            4467999999999  589999999998855443  344689999998853               4666666      69


Q ss_pred             CcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          65 TGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        65 ~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++|++||+ .|.+|.+.  +.+.|.+++|+|.|++|+|+.+|+++|
T Consensus       314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr  359 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR  359 (406)
T ss_pred             ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence            99999999 59999886  478999999999999999999999998

>KOG0772|consensus

Probab=99.36  E-value=7.2e-13  Score=110.43  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      +|+|||+.||+|.  .||.|++||..+..     ++..-|.  ..|++|+||+||++|++-+      .|+++++||+. 
T Consensus       324 ~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq  395 (641)
T KOG0772|consen  324 AWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQ  395 (641)
T ss_pred             ecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccc
Confidence            7999999999998  69999999976421     2222232  3799999999999999999      79999999994 


Q ss_pred             -CcEEEecc----CCcEEEEEEeeCCCeeeecCc
Q psy5876          74 -GKIIKRFN----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        74 -g~~l~~~~----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                       .+.|+...    .-.-.+++|||+.+.|+||+-
T Consensus       396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence             45665432    234568899999999999863

>KOG1063|consensus

Probab=99.36  E-value=1.4e-12  Score=111.40  Aligned_cols=101  Identities=17%  Similarity=0.303  Sum_probs=81.6

Q ss_pred             CeEecCCCEEEEEecC---CCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      ++.||+|++||++...   .-..|++|++.+...+...  |.-.|+.++|||||+||+++|      .|.++.+|..+..
T Consensus       531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs------RDRt~sl~~~~~~  604 (764)
T KOG1063|consen  531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS------RDRTVSLYEVQED  604 (764)
T ss_pred             EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee------cCceEEeeeeecc
Confidence            3679999999998753   2357999999987666543  345799999999999999999      6999999998533


Q ss_pred             EEE-------eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIK-------RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~-------~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...       +.|..-|++..|+|++..++|+|.|++++
T Consensus       605 ~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  605 IKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK  643 (764)
T ss_pred             cchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence            221       22456799999999999999999999985

>KOG0319|consensus

Probab=99.34  E-value=8.1e-12  Score=107.29  Aligned_cols=99  Identities=12%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++.+|+.+.||+|+  .|.+.+||+++.+.+..++  |..++.++.|+|..+.+||+|      .|.+|+||.++ ..++
T Consensus       469 Vaia~ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S------gD~TvKIW~is~fSCl  540 (775)
T KOG0319|consen  469 VAIAPNDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS------GDKTVKIWSISTFSCL  540 (775)
T ss_pred             eEecCCCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc------CCceEEEEEeccceee
Confidence            57899999999999  6999999999988777665  345899999999999999999      69999999994 7788


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .++  |...|....|-.+|+.|+|++.|+.+|
T Consensus       541 kT~eGH~~aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             eeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence            876  466899999999999999999999888

>KOG0275|consensus

Probab=99.34  E-value=2.8e-13  Score=108.20  Aligned_cols=111  Identities=11%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      |.||-|..+||+|+  .||.|++|.+.+|.|+..++   ..+|+++.||.|+..++++|      .|.+++|--+ .|++
T Consensus       269 i~FSRDsEMlAsGs--qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKSGK~  340 (508)
T KOG0275|consen  269 ISFSRDSEMLASGS--QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKSGKC  340 (508)
T ss_pred             EeecccHHHhhccC--cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEeccccchh
Confidence            57999999999999  79999999999999998875   36899999999999999999      7999999988 5888


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeeecCchhhHH---hhhhhhchhccH
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK---KSLKKYTPAFEA  119 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~---~~~~~~~~~~e~  119 (143)
                      +..+.  ..-|+...|.|+|..++|+|.|++||   -...++...|..
T Consensus       341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP  388 (508)
T ss_pred             HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence            88764  66899999999999999999999998   333445555544

>KOG1274|consensus

Probab=99.32  E-value=6.1e-12  Score=110.02  Aligned_cols=98  Identities=17%  Similarity=0.339  Sum_probs=78.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----------cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      |.|+|+|++||+++  -||+|+|||+.++.+..+..          ...++.++|+|+|..||...      .|+.|+++
T Consensus       144 l~~~p~~~fLAvss--~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy  215 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSS--CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVY  215 (933)
T ss_pred             eeEcCCCCEEEEEe--cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec------cCCeEEEE
Confidence            57899999999998  69999999999876654431          23478899999988777777      59999999


Q ss_pred             eecC-cEEEec----cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          71 SFQG-KIIKRF----NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        71 ~~~g-~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +..| ..++.+    +...+..+.|+|.|++|+++..++.|
T Consensus       216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I  256 (933)
T KOG1274|consen  216 SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI  256 (933)
T ss_pred             ccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence            8864 344443    23459999999999999999988876

>KOG2110|consensus

Probab=99.31  E-value=1.9e-11  Score=98.37  Aligned_cols=99  Identities=13%  Similarity=0.267  Sum_probs=80.1

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF   80 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~   80 (143)
                      ++++.|||--+-...|.|.+||+.+.+.+.+.+  ...+-+++|||||.+|||+|.     ...-|+++++ +|+.++++
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeee
Confidence            444558887432146999999999988877764  357999999999999999994     3445789999 69999987


Q ss_pred             c----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 N----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 ~----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +    .-.|++++|+|+++.|.+.|..++|+
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVH  243 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence            6    34799999999999999999888886

>KOG0306|consensus

Probab=99.30  E-value=1.2e-11  Score=106.71  Aligned_cols=99  Identities=12%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +++||||++||++=  .|+++++|=+++.+....+  |.-+|.++..|||++.++|||      .|+.|+||-++ |.|-
T Consensus       514 v~~Spdgk~LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdFGDCH  585 (888)
T KOG0306|consen  514 VSVSPDGKLLAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDFGDCH  585 (888)
T ss_pred             EEEcCCCcEEEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEeccccchhh
Confidence            47899999999997  6999999999998865543  345899999999999999999      79999999997 8776


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  |.+.|-++.|-|+...+.|+|.|+.||
T Consensus       586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             hhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence            654  568999999999999999999999987

>KOG0302|consensus

Probab=99.30  E-value=2.1e-11  Score=98.59  Aligned_cols=98  Identities=13%  Similarity=0.343  Sum_probs=74.8

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCc---eEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDF---SVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~---~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      ++|||.-+ .||+|+  .||+|+|||+..+   .++.+- +...|+-|+|+-.-.+||+|+      .|++++|||+.  
T Consensus       263 LqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~------DdGt~~iwDLR~~  334 (440)
T KOG0302|consen  263 LQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG------DDGTLSIWDLRQF  334 (440)
T ss_pred             hccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC------CCceEEEEEhhhc
Confidence            57999865 777788  7999999999876   244433 335799999999988999999      58999999993  


Q ss_pred             --CcEEE--eccCCcEEEEEEeeCCCe-eeecCchhhH
Q psy5876          74 --GKIIK--RFNSPTFCQLRWRPRPAS-LLSKEQVDKI  106 (143)
Q Consensus        74 --g~~l~--~~~~~~v~~l~wsP~~~~-l~s~s~d~~i  106 (143)
                        |+.+.  +.|..+|+++.|+|.... ++.++.|..|
T Consensus       335 ~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  335 KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence              55554  457899999999998753 4444555443

>KOG0288|consensus

Probab=99.28  E-value=2.1e-11  Score=99.32  Aligned_cols=98  Identities=27%  Similarity=0.493  Sum_probs=80.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      +..|++|..|.+++  .|.++.+.|+.+.+....+.      ....+.+.|||||+|+|+||      .|+.++||++. 
T Consensus       347 l~ls~~g~~lLsss--RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS------~dgsv~iW~v~t  418 (459)
T KOG0288|consen  347 LDLSMDGLELLSSS--RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS------ADGSVYIWSVFT  418 (459)
T ss_pred             EeeccCCeEEeeec--CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc------CCCcEEEEEccC
Confidence            35789999999998  68999999999877666553      23578899999999999999      69999999995 


Q ss_pred             CcEEEecc---CC-cEEEEEEeeCCCeeeecCchhhH
Q psy5876          74 GKIIKRFN---SP-TFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        74 g~~l~~~~---~~-~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      |++-....   .+ .|.+++|.|-|..|++++.++.+
T Consensus       419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence            55544432   23 69999999999999999886543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.28  E-value=4.9e-11  Score=91.47  Aligned_cols=101  Identities=11%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|+|||++|++++. .+|.|.+||+.+++.+.....         .....++|+|||++++.+..     .++.+.+||
T Consensus       162 ~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----~~~~i~v~d  235 (300)
T TIGR03866       162 AEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----PANRVAVVD  235 (300)
T ss_pred             EEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-----CCCeEEEEE
Confidence            369999999866543 479999999998876554321         12457899999998655542     366899999


Q ss_pred             ec-CcEEEec-cCCcEEEEEEeeCCCeeeec-CchhhHH
Q psy5876          72 FQ-GKIIKRF-NSPTFCQLRWRPRPASLLSK-EQVDKIK  107 (143)
Q Consensus        72 ~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~-s~d~~i~  107 (143)
                      .. ++.+... ....+.+++|+|+|+.|+++ +.+++|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence            95 5555443 35678999999999999876 4466553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289|consensus

Probab=99.28  E-value=2.6e-11  Score=99.43  Aligned_cols=105  Identities=17%  Similarity=0.272  Sum_probs=88.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ...|.|.||++++  .||+.-|.|..++.++....+    -.+++++|+|||-.|++|.      .|+.++|||+. +..
T Consensus       310 s~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt------~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  310 SLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT------PDGVVKIWDLKSQTN  381 (506)
T ss_pred             eeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC------CCceEEEEEcCCccc
Confidence            4579999999999  699999999999988776533    2479999999999999999      69999999995 445


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT  114 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~  114 (143)
                      +.+++  ..+|..++|+-+|=+|+++++|..|+       +|+++|.
T Consensus       382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            66664  67999999999999999999999766       5666654

>KOG2139|consensus

Probab=99.28  E-value=1.7e-11  Score=98.85  Aligned_cols=122  Identities=19%  Similarity=0.282  Sum_probs=89.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~   76 (143)
                      ++|.|||..|+++++ .|..|.|||.+++..+  ......+++-+.|||||.+|.+++      .|..+++|+....  .
T Consensus       201 mqwn~dgt~l~tAS~-gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~  273 (445)
T KOG2139|consen  201 MQWNEDGTILVTASF-GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTK  273 (445)
T ss_pred             EEEcCCCCEEeeccc-CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhccccee
Confidence            579999999999999 4899999999987643  323446799999999999999999      5999999966322  1


Q ss_pred             EE-eccCCcEEEEEEeeCCCeee-ecCchhhHHhhhhhhchhccHHhHHHHhhccccceeE
Q psy5876          77 IK-RFNSPTFCQLRWRPRPASLL-SKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLL  135 (143)
Q Consensus        77 l~-~~~~~~v~~l~wsP~~~~l~-s~s~d~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  135 (143)
                      .. ......|....|+|.|..|+ +.+....+      |+-+|..++-.....+.-+..++
T Consensus       274 erw~lgsgrvqtacWspcGsfLLf~~sgsp~l------ysl~f~~~~~~~~~~~~~k~~ll  328 (445)
T KOG2139|consen  274 ERWILGSGRVQTACWSPCGSFLLFACSGSPRL------YSLTFDGEDSVFLRPQSIKRVLL  328 (445)
T ss_pred             cceeccCCceeeeeecCCCCEEEEEEcCCceE------EEEeecCCCccccCcccceeeee
Confidence            11 12355899999999998776 55555555      77788777665543333333333

>KOG0276|consensus

Probab=99.27  E-value=8.2e-12  Score=106.08  Aligned_cols=99  Identities=14%  Similarity=0.253  Sum_probs=84.0

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCC--CEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTG--RYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG--~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |+|.|. -+.+|+++  .|++|++|.+.+..+..+++  ..+|+++.+-|-|  -||+||+      .|.+++|||+|.+
T Consensus       146 v~fnPkD~ntFaS~s--LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk  217 (794)
T KOG0276|consen  146 VAFNPKDPNTFASAS--LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTK  217 (794)
T ss_pred             EEecCCCccceeeee--ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchH
Confidence            467775 45899999  69999999999877666654  3589999999866  4999999      5999999999755


Q ss_pred             -EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 -IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 -~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       |+.++  |.+.|..+.|+|.-+.++|||+|+++|
T Consensus       218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvr  252 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVR  252 (794)
T ss_pred             HHHHHhhcccccceEEEecCCCcEEEEecCCccEE
Confidence             66665  578999999999999999999999998

>KOG0296|consensus

Probab=99.26  E-value=5.9e-11  Score=95.47  Aligned_cols=98  Identities=12%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++.+|+.+++|+||  .|..-.+|++.+++.+...  |...|+++.||.||.|||||.      .++.++||..+ |...
T Consensus        70 vsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd------msG~v~v~~~stg~~~  141 (399)
T KOG0296|consen   70 VSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD------MSGKVLVFKVSTGGEQ  141 (399)
T ss_pred             EEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC------CCccEEEEEcccCceE
Confidence            46789999999998  6888999999998866554  345799999999999999999      79999999995 6655


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ...  ..+.+--+.|+|.+..|+.|+.|+.+
T Consensus       142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsv  172 (399)
T KOG0296|consen  142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSV  172 (399)
T ss_pred             EEeecccCceEEEEecccccEEEeecCCCcE
Confidence            544  46677789999999999999999865

>KOG0278|consensus

Probab=99.26  E-value=3e-11  Score=93.67  Aligned_cols=96  Identities=16%  Similarity=0.291  Sum_probs=75.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe-
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR-   79 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~-   79 (143)
                      .|+||++|.++-   -+.|.|||..++.+++.+.. ..|.+.+.+|+...+++|+      .|..++-||+ +|..+-. 
T Consensus       192 vs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  192 VSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             eccCCCEEEEec---CceeEEeccccccceeeccCccccccccccCCCceEEecC------cceEEEEEeccCCceeeec
Confidence            577787777764   35677888887777776643 3577778888877777777      6778888999 4776644 


Q ss_pred             --ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          80 --FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        80 --~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .+..+|.++.|+|+|...++||+|++||
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEE
Confidence              3578999999999999999999999998

>KOG0285|consensus

Probab=99.25  E-value=2e-11  Score=98.31  Aligned_cols=99  Identities=13%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +++-|-.+++++|+  .|+++.|||+.++++..+.. | ..|..+++|+---|+.+++      .|+.|++||+. .+.|
T Consensus       157 vavdP~n~wf~tgs--~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g------edk~VKCwDLe~nkvI  228 (460)
T KOG0285|consen  157 VAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG------EDKQVKCWDLEYNKVI  228 (460)
T ss_pred             EeeCCCceeEEecC--CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec------CCCeeEEEechhhhhH
Confidence            46779999999999  69999999999999887764 3 4689999999999999999      69999999995 6667


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+  -..|++++.+|.-..|+|++.|.++|
T Consensus       229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~R  260 (460)
T KOG0285|consen  229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIR  260 (460)
T ss_pred             HHhccccceeEEEeccccceeEEecCCcceEE
Confidence            7665  56899999999999999999999887

>KOG0292|consensus

Probab=99.25  E-value=9.3e-12  Score=109.05  Aligned_cols=99  Identities=14%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|.|...+|+++-.  .|.|++||...+.++.+|. | ++|..++|+|++-+|++|+      .|-.|++|++. -+++
T Consensus        15 lsFHP~rPwILtslH--sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG------DDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLH--SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG------DDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             eecCCCCCEEEEeec--CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC------CccEEEEEecccceeh
Confidence            589999999999863  7999999999888888873 3 6899999999999999999      58899999995 5677


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.  |-+-|..+.|++.-++|+|+|+|++||
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIR  118 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEE
Confidence            775  467899999999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.25  E-value=1.8e-10  Score=88.32  Aligned_cols=98  Identities=10%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|+|||+.+++++. .++.|++||..+++.+..+. +..+..++|+|+|+++++++.     .|+.+++||+. ++.+.
T Consensus        36 l~~~~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        36 ITLSKDGKLLYVCAS-DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE-----DDNLVTVIDIETRKVLA  109 (300)
T ss_pred             eEECCCCCEEEEEEC-CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC-----CCCeEEEEECCCCeEEe
Confidence            479999998754432 58999999999887766543 345678999999998876653     47899999996 45555


Q ss_pred             ecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876          79 RFN-SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        79 ~~~-~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ... ...+..++|+|+|..+++++.+.
T Consensus       110 ~~~~~~~~~~~~~~~dg~~l~~~~~~~  136 (300)
T TIGR03866       110 EIPVGVEPEGMAVSPDGKIVVNTSETT  136 (300)
T ss_pred             EeeCCCCcceEEECCCCCEEEEEecCC
Confidence            543 34578899999999999887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0315|consensus

Probab=99.24  E-value=2.3e-11  Score=94.18  Aligned_cols=98  Identities=15%  Similarity=0.305  Sum_probs=82.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      +...||+++||+|+   ...||+||+++..  .+.+++  ...|+.+.|.-|||++.|||      .|++++|||+..-.
T Consensus        46 LeiTpdk~~LAaa~---~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs------eDgt~kIWdlR~~~  116 (311)
T KOG0315|consen   46 LEITPDKKDLAAAG---NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS------EDGTVKIWDLRSLS  116 (311)
T ss_pred             EEEcCCcchhhhcc---CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC------CCceEEEEeccCcc
Confidence            35789999999998   5799999998754  466664  36899999999999999999      69999999997643


Q ss_pred             EE-ec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IK-RF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~-~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +. .+ +..+|+++..+|+...|+++-+.+.|+
T Consensus       117 ~qR~~~~~spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen  117 CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             cchhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence            33 33 368999999999999999999999887

>KOG0310|consensus

Probab=99.24  E-value=6.3e-11  Score=97.91  Aligned_cols=97  Identities=21%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             eEecCCC-EEEEEecCCCCeEEEEECCCc-eEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           2 KLRMRGT-HIVLAELRDTGSLEFVDTGDF-SVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~-~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +|+|-.. .+++||.  ||+|++||+.+. ..+.++.| .+|.++.+=|.|..||+|+       .+.|++||+. |.++
T Consensus       160 ~~~~~~~hivvtGsY--Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  160 DISPANDHIVVTGSY--DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQL  230 (487)
T ss_pred             ccccCCCeEEEecCC--CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCcee
Confidence            5777755 7778885  999999998864 55666644 6899999999999999999       6899999996 6544


Q ss_pred             -Ee-c-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 -KR-F-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 -~~-~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       .. . |...|+++.+..++.+|+|++-|+.+|
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceE
Confidence             33 2 567899999999999999999999886

>KOG0305|consensus

Probab=99.24  E-value=4.1e-11  Score=100.63  Aligned_cols=94  Identities=20%  Similarity=0.315  Sum_probs=78.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECC-CCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      +.|+|||++||+||  .|+.+.|||....+++.++ +| ..|..++|+| ....||+|+..    .|+.|++||. +|..
T Consensus       307 Lkws~d~~~lASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  307 LKWSPDGNQLASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----ADRCIKFWNTNTGAR  380 (484)
T ss_pred             eEECCCCCeeccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC----cccEEEEEEcCCCcE
Confidence            57999999999999  5999999999766655554 33 5799999999 45588998864    7999999999 5888


Q ss_pred             EEecc-CCcEEEEEEeeCCCeeeec
Q psy5876          77 IKRFN-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        77 l~~~~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      +.... ...|+++.|+|..+-|++.
T Consensus       381 i~~vdtgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  381 IDSVDTGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             ecccccCCceeeEEEcCCCCEEEEe
Confidence            88764 6799999999999777765

>KOG0265|consensus

Probab=99.23  E-value=4.6e-11  Score=94.21  Aligned_cols=98  Identities=16%  Similarity=0.345  Sum_probs=81.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC----CceEEeeec---c---CceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG----DFSVMNAAE---H---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~----~~~~~~~~~---~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      |+.||+|.++.+-+  .|.++++||+.    ...++..+.   |   .....++|||+++++..++      .|+.+++|
T Consensus       222 lsls~~gs~llsns--Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags------~dr~vyvw  293 (338)
T KOG0265|consen  222 LSLSRYGSFLLSNS--MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS------ADRFVYVW  293 (338)
T ss_pred             EEeccCCCcccccc--ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc------ccceEEEe
Confidence            46789999999988  58999999976    334455442   2   2467899999999999999      69999999


Q ss_pred             eecC-cEEEecc--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          71 SFQG-KIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        71 ~~~g-~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      |..+ +.+++++  ...|+++.|+|..+.|++++-|++|
T Consensus       294 d~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  294 DTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             ecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            9987 4777875  5679999999999999999999877

>KOG0305|consensus

Probab=99.23  E-value=9.3e-11  Score=98.46  Aligned_cols=103  Identities=9%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|-.. .||+||=..|+.|+|||+.+++.+.... ...|+++.|+|..+-|+++...    .++.|.||++- -+++
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQITLWKYPSMKLV  424 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCC----CCCcEEEEecccccee
Confidence            57888655 6666542279999999999999988764 4679999999999888887754    57899999994 4444


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  |..+|..++|+|||..+++++.|+++|
T Consensus       425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  425 AELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             eeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence            443  577899999999999999999999997

>KOG1009|consensus

Probab=99.23  E-value=2e-11  Score=99.20  Aligned_cols=96  Identities=18%  Similarity=0.413  Sum_probs=80.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--------C--------ceEEe--eeccCceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--------D--------FSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--------~--------~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      +.|+|+|..||+|+  ++|.|.+|-..        +        .....  ..+...+++++|+||+.++++++      
T Consensus        71 vRf~p~gelLASg~--D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------  142 (434)
T KOG1009|consen   71 VRFSPDGELLASGG--DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------  142 (434)
T ss_pred             EEEcCCcCeeeecC--CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------
Confidence            47999999999999  78999999865        2        11111  23346799999999999999999      


Q ss_pred             cCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          63 ADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        63 ~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .|+.+++||+ .|+++...  |..-+..++|-|-++++++-+.|+
T Consensus       143 ~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence            7999999999 58877664  467899999999999999999887

>KOG0289|consensus

Probab=99.22  E-value=7e-11  Score=96.95  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=82.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      .+|.|||..+++|.  .||.|+|||+.++..+..|+  ..+|..|+|+-+|-|||++.      .|+.|++||+. -+..
T Consensus       353 ~~fHpDgLifgtgt--~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  353 AAFHPDGLIFGTGT--PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLKNF  424 (506)
T ss_pred             eeEcCCceEEeccC--CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhccc
Confidence            36999999999998  69999999999888777774  35899999999999999999      57789999995 3333


Q ss_pred             Eecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .++.   ..++.++.|-+.|++|+.++.+=.|.
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            3333   33699999999999999998776554

>KOG0292|consensus

Probab=99.21  E-value=7.2e-11  Score=103.58  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc----
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK----   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~----   75 (143)
                      .|.|.=.+|++++  +|.+|+||+-.+++++..  .|.+.|.+..|+|....++++|      .|.+|++||+.|=    
T Consensus       100 ~FHheyPWIlSAS--DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS------LDQTVRVWDisGLRkk~  171 (1202)
T KOG0292|consen  100 FFHHEYPWILSAS--DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS------LDQTVRVWDISGLRKKN  171 (1202)
T ss_pred             eccCCCceEEEcc--CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec------ccceEEEEeecchhccC
Confidence            5788888999999  799999999998887765  4557899999999999999999      7999999998651    


Q ss_pred             ------------------------EEEe----ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 ------------------------IIKR----FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ------------------------~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                                              .+.+    -|..+|+-++|+|.-+.++||++|..||
T Consensus       172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK  231 (1202)
T KOG0292|consen  172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK  231 (1202)
T ss_pred             CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence                                    1111    1345799999999999999999999987

>KOG1446|consensus

Probab=99.21  E-value=1.1e-10  Score=92.23  Aligned_cols=94  Identities=20%  Similarity=0.374  Sum_probs=78.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-----ceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-----QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-----~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g   74 (143)
                      |.|||||++|+.+.  ..+.+.+-|.-+|..+.++...     --.+.+|+|||+++++|+      .|+.+.+|++ +|
T Consensus       193 l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs------~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  193 LEFSPDGKSILLST--NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS------DDGTIHVWNLETG  264 (311)
T ss_pred             eEEcCCCCEEEEEe--CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec------CCCcEEEEEcCCC
Confidence            57999999999998  5789999999988887776421     125889999999999999      5999999999 58


Q ss_pred             cEEEecc---CCcEEEEEEeeCCCeeeecCc
Q psy5876          75 KIIKRFN---SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        75 ~~l~~~~---~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +.+..+.   ..++.++.|+|.-.+++|++.
T Consensus       265 ~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  265 KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            8887754   457889999999999999863

>KOG1445|consensus

Probab=99.19  E-value=1.4e-11  Score=105.15  Aligned_cols=98  Identities=11%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             eEec-CCCEEEEEecCCCCeEEEEECCC---------ceEEeeeccCceEEEEECCCC-CEEEEeecCcceecCCcEEEE
Q psy5876           2 KLRM-RGTHIVLAELRDTGSLEFVDTGD---------FSVMNAAEHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         2 ~~SP-dG~~las~~~~~dg~i~iWd~~~---------~~~~~~~~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW   70 (143)
                      .|.| |...||+++  +||.|++|.+..         .+.+.+.|...|+++.|+|=. ..||+++      .|.+|++|
T Consensus       634 ~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------yd~Ti~lW  705 (1012)
T KOG1445|consen  634 HWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------YDSTIELW  705 (1012)
T ss_pred             ccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------ccceeeee
Confidence            4555 566899998  799999999763         334455556789999999954 4678888      59999999


Q ss_pred             eec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          71 SFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        71 ~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |+. ++.-.+  -|.+.|.+++|+|+|+.++|.+.|++||
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence            995 443323  3588999999999999999999999987

>KOG1274|consensus

Probab=99.19  E-value=1.1e-10  Score=102.20  Aligned_cols=88  Identities=13%  Similarity=0.387  Sum_probs=70.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      ++|+|+|..+|..+  .|+.|.+|+..+++....+    .+..++.++|||+|+|||+++      .|+.|-|||++.+.
T Consensus       194 ~aW~Pk~g~la~~~--~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~------~~g~I~vWnv~t~~  265 (933)
T KOG1274|consen  194 LAWHPKGGTLAVPP--VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST------LDGQILVWNVDTHE  265 (933)
T ss_pred             eeecCCCCeEEeec--cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec------cCCcEEEEecccch
Confidence            48999977776666  4899999999988766554    234589999999999999999      79999999997632


Q ss_pred             EEeccCCcEEEEEEeeCCCee
Q psy5876          77 IKRFNSPTFCQLRWRPRPASL   97 (143)
Q Consensus        77 l~~~~~~~v~~l~wsP~~~~l   97 (143)
                      . +.....|++++|.|+...|
T Consensus       266 ~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  266 R-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             h-ccccceeEEEecCCCCCee
Confidence            2 2235689999999997643

>KOG0641|consensus

Probab=99.18  E-value=2.1e-10  Score=88.21  Aligned_cols=97  Identities=27%  Similarity=0.403  Sum_probs=80.4

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeee----c-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----E-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      +|=+|-++|+|+  +|.+|+|||+.-..++.+.    +     ...|..++-.|.||.|++|-      .|....+||+.
T Consensus       190 yswn~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~------~dssc~lydir  261 (350)
T KOG0641|consen  190 YSWNGAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH------ADSSCMLYDIR  261 (350)
T ss_pred             EEecCcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc------CCCceEEEEee
Confidence            345678999998  7999999997754555442    1     24689999999999999998      69999999997


Q ss_pred             -CcEEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 -GKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       |+.++.++  ...|.++.|+|...+|++++.|-.||
T Consensus       262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik  298 (350)
T KOG0641|consen  262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK  298 (350)
T ss_pred             CCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence             55677764  67899999999999999999999887

>KOG0640|consensus

Probab=99.16  E-value=7.4e-11  Score=93.85  Aligned_cols=103  Identities=16%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC-----------------c-eEEeee--ccCceEEEEECCCCCEEEEeecCcce
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD-----------------F-SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKT   61 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~-----------------~-~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~   61 (143)
                      +|||||.++|+|+  .|..|+|.|++.                 + -.+.++  |..+|+++.|+|-...|++++     
T Consensus       119 afs~DG~lvATGs--aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s-----  191 (430)
T KOG0640|consen  119 AFSPDGSLVATGS--ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS-----  191 (430)
T ss_pred             eeCCCCcEEEccC--CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc-----
Confidence            6999999999999  699999999871                 1 123333  235799999999999999999     


Q ss_pred             ecCCcEEEEeecCcEEEe----cc-CCcEEEEEEeeCCCeeeecCchhhHH-hhhhh
Q psy5876          62 KADTGYWQWSFQGKIIKR----FN-SPTFCQLRWRPRPASLLSKEQVDKIK-KSLKK  112 (143)
Q Consensus        62 ~~D~~i~iW~~~g~~l~~----~~-~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~~  112 (143)
                       .|+++++||+...-..+    ++ ..+|.+++|+|.|..|+.|.+-.++| ++..+
T Consensus       192 -rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  192 -RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             -CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence             79999999996443322    22 56899999999999999999888887 44433

>KOG0296|consensus

Probab=99.15  E-value=2.4e-10  Score=91.98  Aligned_cols=106  Identities=14%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l   77 (143)
                      +.||.||.+||+|+  .+|.|++|+..++.....+  +...+.=+.|+|-++.|+.|+      .|+.+.+|.+.. ...
T Consensus       112 ~~FshdgtlLATGd--msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~------~DGsvWmw~ip~~~~~  183 (399)
T KOG0296|consen  112 CSFSHDGTLLATGD--MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS------TDGSVWMWQIPSQALC  183 (399)
T ss_pred             EEEccCceEEEecC--CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec------CCCcEEEEECCCccee
Confidence            47999999999999  5899999999988766655  345677789999999999999      699999999954 443


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH-hhhhhhc
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-KSLKKYT  114 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~~~~  114 (143)
                      +.+  +..++.+=.|.|+|++++++..|++|+ =|+++..
T Consensus       184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence            333  567899999999999999999999988 3555543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=4.7e-10  Score=93.09  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEE--EeecCc
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ--WSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i--W~~~g~   75 (143)
                      .+|||||++||.++.+ .+..|.+||+.+++.  +..+. .....++|||||++|+.++.     .++...|  ||..+.
T Consensus       209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASS-----KDGVLNIYVMGANGG  282 (429)
T ss_pred             ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEe-----cCCcEEEEEEECCCC
Confidence            4799999999988753 234799999987653  33332 23457899999999998763     3555555  466555


Q ss_pred             EEEecc--CCcEEEEEEeeCCCeeeecC
Q psy5876          76 IIKRFN--SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        76 ~l~~~~--~~~v~~l~wsP~~~~l~s~s  101 (143)
                      .+....  ...+....|+|||+.|+..+
T Consensus       283 ~~~~lt~~~~~~~~~~wSpDG~~i~f~s  310 (429)
T PRK01742        283 TPSQLTSGAGNNTEPSWSPDGQSILFTS  310 (429)
T ss_pred             CeEeeccCCCCcCCEEECCCCCEEEEEE
Confidence            444432  34577899999999887654

>KOG1539|consensus

Probab=99.14  E-value=1.7e-10  Score=100.44  Aligned_cols=65  Identities=15%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|||||++|++++  .|++|++||+.++.++..+. ..++++++|||+|.||||+.-     ..++|++|.-
T Consensus       582 ~~FS~DgrWlisas--mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-----d~~gIylWsN  647 (910)
T KOG1539|consen  582 MTFSPDGRWLISAS--MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-----DQNGIYLWSN  647 (910)
T ss_pred             eEeCCCCcEEEEee--cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe-----cCceEEEEEc
Confidence            47999999999999  59999999999999988764 357999999999999999993     2389999974

>KOG1539|consensus

Probab=99.13  E-value=9e-11  Score=102.11  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=75.7

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCc
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPT   84 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~   84 (143)
                      .+|++.  .|-.|+++|+.+.+.+..+.  ...+++++||||||+|++++      .|.+|++||+ +|.+|.... ..+
T Consensus       548 l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd~~  619 (910)
T KOG1539|consen  548 LLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVDSP  619 (910)
T ss_pred             hhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecCCc
Confidence            445544  47789999999988877763  45799999999999999999      7999999999 799998876 568


Q ss_pred             EEEEEEeeCCCeeeecCchh
Q psy5876          85 FCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        85 v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ..++.|+|+|..|+|...|+
T Consensus       620 ~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  620 CTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             ceeeEECCCCCEEEEEEecC
Confidence            89999999999999998774

>KOG1538|consensus

Probab=99.13  E-value=1.7e-10  Score=99.10  Aligned_cols=92  Identities=22%  Similarity=0.323  Sum_probs=73.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l   77 (143)
                      ++|.|||..|+.+.   +..+.+||++.|.++.+..  ...|++++||.||+.+|+|+      .|+.+.+|+.+-+ .+
T Consensus        18 ~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~------aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS------ADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             eEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC------CceeEEEeccccccee
Confidence            58999999999885   6789999999998887763  35799999999999999999      6999999988633 33


Q ss_pred             EeccCCcEEEEEEeeCCCeeeecC
Q psy5876          78 KRFNSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        78 ~~~~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      .-.|.+.|.+++|+|-.+.|+|++
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCs  112 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCS  112 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcc
Confidence            334566777777777777777764

>KOG0771|consensus

Probab=99.12  E-value=1.6e-10  Score=94.04  Aligned_cols=63  Identities=17%  Similarity=0.385  Sum_probs=50.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|++||..|++++  .||++|+|+..+...+...  ++..|.++.|||||++||+-+.      | ...||++
T Consensus       150 vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~------d-~~~VW~~  214 (398)
T KOG0771|consen  150 VAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA------D-SARVWSV  214 (398)
T ss_pred             EEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC------C-ceEEEEe
Confidence            58999999999999  6999999996665544432  4578999999999999999984      3 4555555

>KOG0267|consensus

Probab=99.11  E-value=3.6e-11  Score=103.39  Aligned_cols=99  Identities=16%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      |.|+++...|++|+  .+|+|++||+++.+.+.++  +...+.++.|+|-|.|+|+|+      .|..+++||.. -.|.
T Consensus        76 l~f~~~E~Llaags--asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS------tdtd~~iwD~Rk~Gc~  147 (825)
T KOG0267|consen   76 LTFDTSERLLAAGS--ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS------TDTDLKIWDIRKKGCS  147 (825)
T ss_pred             eecCcchhhhcccc--cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc------ccccceehhhhccCce
Confidence            46788888888888  6999999999988877665  335799999999999999999      58999999996 5576


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..  +...|..+.|+|+|.+++++++|.+++
T Consensus       148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            655  355788999999999999999988877

>KOG2394|consensus

Probab=99.10  E-value=2.8e-10  Score=95.47  Aligned_cols=100  Identities=14%  Similarity=0.253  Sum_probs=72.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--------------Cc---eEEe-----------ee--ccCceEEEEECCCCC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--------------DF---SVMN-----------AA--EHHQATDVEWDPTGR   50 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--------------~~---~~~~-----------~~--~~~~v~~i~wsPdG~   50 (143)
                      |.|=|.+.-+.++.. .+|.++++|.+              .+   .+..           ..  ....|...+|||||+
T Consensus       225 ikWvpg~~~~Fl~a~-~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~  303 (636)
T KOG2394|consen  225 IKWVPGSDSLFLVAH-ASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK  303 (636)
T ss_pred             EEEEeCCCceEEEEE-ecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc
Confidence            356666665544444 58999999754              01   1100           00  113678899999999


Q ss_pred             EEEEeecCcceecCCcEEEEeecCcEEEe-cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          51 YVMSGVSLWKTKADTGYWQWSFQGKIIKR-FN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        51 ~lat~s~~~~~~~D~~i~iW~~~g~~l~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |||+.|      .|+.++|||++.+.|.- .+  ...+.+++|||||++|++|++|..|.
T Consensus       304 ~LA~VS------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVt  357 (636)
T KOG2394|consen  304 YLATVS------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT  357 (636)
T ss_pred             eEEEEe------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEE
Confidence            999999      59999999998765542 22  67899999999999999999998653

>KOG0267|consensus

Probab=99.09  E-value=6.1e-11  Score=101.97  Aligned_cols=103  Identities=19%  Similarity=0.315  Sum_probs=86.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      +.|+|=|.|.|+++  .|+.+.+||+...-+.+.+. | ..|..+.|+|||++++.++      .|+.++|||. .|+.+
T Consensus       118 v~f~P~~~~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~agk~~  189 (825)
T KOG0267|consen  118 VDFHPYGEFFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTAGKLS  189 (825)
T ss_pred             eeeccceEEecccc--ccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC------Ccceeeeecccccccc
Confidence            47999999999988  69999999998655666653 3 3578899999999999999      5899999999 58888


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCchhhHH-hhhh
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-KSLK  111 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~  111 (143)
                      ..+.  ...+..+.|+|..-.|.+||.|++++ .+++
T Consensus       190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  190 KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             cccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            7664  56788899999999999999999987 4444

>KOG0268|consensus

Probab=99.09  E-value=1.2e-10  Score=93.91  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=80.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-E--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-M--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      |+|+|.+--+++|+  .|..+..+|+...+. +  ...+...|.++.|||.|+-|++||      -|++|+||.+. |+.
T Consensus       235 IswnPeafnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  235 ICWNPEAFNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHS  306 (433)
T ss_pred             eecCccccceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcc
Confidence            68999887788887  689999999876543 2  223345799999999999999999      69999999996 432


Q ss_pred             --EE-eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 --IK-RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 --l~-~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        ++ +..-..|.++.||-|.++++|||+|..||
T Consensus       307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR  340 (433)
T KOG0268|consen  307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR  340 (433)
T ss_pred             hhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence              22 22356899999999999999999999887

>KOG0303|consensus

Probab=99.08  E-value=4.7e-10  Score=91.33  Aligned_cols=99  Identities=11%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCce-------EEe--eeccCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFS-------VMN--AAEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~-------~~~--~~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i   69 (143)
                      +.|.|-.. .||+|+  .|.+|.||++...-       .+.  .+|...|..++|+|.-. .|++++      .|+.|.|
T Consensus        87 i~w~PfnD~vIASgS--eD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag------~Dn~v~i  158 (472)
T KOG0303|consen   87 IDWCPFNDCVIASGS--EDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG------SDNTVSI  158 (472)
T ss_pred             cccCccCCceeecCC--CCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc------CCceEEE
Confidence            46888655 667777  69999999987422       122  23345799999999877 567777      5999999


Q ss_pred             Eee-cCcEEEe-ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSF-QGKIIKR-FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~-~g~~l~~-~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |++ +|.-+.+ .|.+.|++++|+-||..|+|.+.|++||
T Consensus       159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvR  198 (472)
T KOG0303|consen  159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVR  198 (472)
T ss_pred             EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeE
Confidence            999 5875544 4788999999999999999999999987

>KOG0308|consensus

Probab=99.08  E-value=5.5e-10  Score=95.27  Aligned_cols=104  Identities=15%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      +-+|+|..|++||  ..+.++|||-.+.+.+.++  |...|..+.-++||+.++++|      .|++|++||+ +-++++
T Consensus       178 A~N~t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s------SDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  178 AMNQTGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS------SDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             ecCCcceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC------CCceEEeeeccccceee
Confidence            4568898999998  5899999999988776654  346899999999999999999      5999999999 567887


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhH-Hhhhhhh
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKI-KKSLKKY  113 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i-~~~~~~~  113 (143)
                      ++  |...||++.-+|.=..+.+|+.|+.| +.+++++
T Consensus       250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            75  57789999999999999999999865 4555554

>KOG0269|consensus

Probab=99.06  E-value=3.2e-10  Score=98.15  Aligned_cols=132  Identities=17%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCce-EEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFS-VMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~-~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      |.|||. +.+++++.  +.|.+++||+.... +..+  -|.++|.++.|+|++.+||||+      .|+.++||+.++..
T Consensus       182 V~fsp~~~~~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG------RDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG------RDKMVKIWDMTDSR  253 (839)
T ss_pred             eeeccCCCceEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC------CCccEEEEeccCCC
Confidence            468875 55666665  68999999988543 2222  2446899999999999999999      69999999998543


Q ss_pred             ---EEecc-CCcEEEEEEeeCCCee-eecCc--hhhHH--hhhhhhc--hhccHHhHHHHhhccccceeEEEEee
Q psy5876          77 ---IKRFN-SPTFCQLRWRPRPASL-LSKEQ--VDKIK--KSLKKYT--PAFEAKDRQRMNKASKYADLLVVLSC  140 (143)
Q Consensus        77 ---l~~~~-~~~v~~l~wsP~~~~l-~s~s~--d~~i~--~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~  140 (143)
                         ++..+ ..+|..+.|+|.-+.. +|++.  |-.|+  +--|-|.  +.|++.+.-.-.-|=++.+-.+.+||
T Consensus       254 ~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  254 AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence               33333 6799999999998754 45543  33333  2222233  45555554444445555566666665

>KOG0285|consensus

Probab=99.06  E-value=6.6e-10  Score=89.72  Aligned_cols=99  Identities=10%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l   77 (143)
                      +++|+.-.||.+++  .|+.|+-||++..+.+..++.  ..|.+++..|.-+.|+||+      .|..++|||+.-+ .+
T Consensus       199 vavS~rHpYlFs~g--edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g------rDst~RvWDiRtr~~V  270 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAG--EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG------RDSTIRVWDIRTRASV  270 (460)
T ss_pred             eeecccCceEEEec--CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC------CcceEEEeeecccceE
Confidence            57899999999999  699999999998888876543  5799999999999999999      5999999999644 45


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +.+  |.++|..+.++|-.+.++|+|.|.+||
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             EEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            543  578999999999999999999999998

>KOG0306|consensus

Probab=99.05  E-value=4.8e-10  Score=96.98  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=85.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +..|||++.|++|+  .|.+|++|.++=|.|-..+. | ..|.++.|-|+...+.||+      .|+.|+-||.. =.++
T Consensus       556 mDIS~DSklivTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g------KD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  556 MDISPDSKLIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG------KDGKVKQWDGEKFEEI  627 (888)
T ss_pred             EeccCCcCeEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec------CcceEEeechhhhhhh
Confidence            35799999999999  79999999999887766652 3 5799999999999999999      79999999975 3345


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.  |...|++++-+|+|..++|+|.|..||
T Consensus       628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIR  659 (888)
T KOG0306|consen  628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR  659 (888)
T ss_pred             eeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence            544  466899999999999999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=2.3e-09  Score=89.15  Aligned_cols=99  Identities=10%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .+|||||+.||..+.. .+..|.+||+.+++.  +..+. ..+..++|||||++|+......   .+..+++||+++..+
T Consensus       204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~---g~~~I~~~d~~tg~~  279 (429)
T PRK03629        204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKT---GSLNLYVMDLASGQI  279 (429)
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCC---CCcEEEEEECCCCCE
Confidence            3799999999976542 245799999987753  33332 3456789999999998765310   123588899975544


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ....  ...+....|+|||+.|+..+++
T Consensus       280 ~~lt~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        280 RQVTDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             EEccCCCCCcCceEECCCCCEEEEEeCC
Confidence            4332  3467789999999999876654

>KOG2096|consensus

Probab=99.05  E-value=7.8e-10  Score=88.28  Aligned_cols=96  Identities=10%  Similarity=0.155  Sum_probs=76.5

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee----cCcE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF----QGKI   76 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~----~g~~   76 (143)
                      ..-++++|++++  .|.+|.+|+.. |+.+.....  ...+.++-|||||+||+++      .-.-+++|.+    +|..
T Consensus       195 iA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g------FTpDVkVwE~~f~kdG~f  265 (420)
T KOG2096|consen  195 IAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG------FTPDVKVWEPIFTKDGTF  265 (420)
T ss_pred             ecCCceEEEEec--CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec------CCCCceEEEEEeccCcch
Confidence            346789999999  58999999998 777766543  3567899999999999998      4556899987    3431


Q ss_pred             --E---Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 --I---KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 --l---~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        +   .++  |...|..++|+|+..+++|.|.|+++|
T Consensus       266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence              1   222  356899999999999999999999887

>KOG0643|consensus

Probab=99.04  E-value=7.5e-10  Score=86.50  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEe-e--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-A--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      -|+|-|++|++|.  .||.|.+||+.+++.+. .  .|...|+++.+|||..|++|+|      .|++-++||+. =.++
T Consensus       154 ~Wg~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s------~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  154 LWGPLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS------KDTTAKLVDVRTLEVL  225 (327)
T ss_pred             eecccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc------cCccceeeeccceeeE
Confidence            5999999999998  69999999999975443 3  2345899999999999999999      69999999996 4456


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeec-CchhhHHhhhhhhchhccH
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSK-EQVDKIKKSLKKYTPAFEA  119 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~-s~d~~i~~~~~~~~~~~e~  119 (143)
                      .+.. ..+|++.+++|....++-+ +++..-.....+-..+||+
T Consensus       226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA  269 (327)
T KOG0643|consen  226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA  269 (327)
T ss_pred             EEeeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence            6655 6799999999988776665 4444333333333344443

>KOG1007|consensus

Probab=99.04  E-value=6.5e-10  Score=87.70  Aligned_cols=97  Identities=14%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             eEec--CCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeec--
Q psy5876           2 KLRM--RGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         2 ~~SP--dG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      +|||  ||+.+++.+   |+++++||+.+.++....   |...+.++.|+|+-++ ||||+      .|+.++|||..  
T Consensus       177 ~WspHHdgnqv~tt~---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g------DdgyvriWD~R~t  247 (370)
T KOG1007|consen  177 AWSPHHDGNQVATTS---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG------DDGYVRIWDTRKT  247 (370)
T ss_pred             ccCCCCccceEEEeC---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC------CCccEEEEeccCC
Confidence            5888  899999986   899999999987765554   3357999999999985 56666      59999999995  


Q ss_pred             CcEEEecc--CCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876          74 GKIIKRFN--SPTFCQLRWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~~--~~~v~~l~wsP~~-~~l~s~s~d~~i~  107 (143)
                      ...+...+  ...|+++.|+|-- +.|+|++-|..|-
T Consensus       248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~  284 (370)
T KOG1007|consen  248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN  284 (370)
T ss_pred             CccccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence            33566654  5689999999975 6777888776543

>KOG0269|consensus

Probab=99.03  E-value=5.4e-10  Score=96.74  Aligned_cols=98  Identities=14%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             eEecCCC-EEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      .|++--. +|++|+  +||+|++||+..-+-..++  ....|.++.|+|- +.+|+++.      ..+.+.+||+.  .+
T Consensus       140 dfh~tep~iliSGS--QDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~------dsG~lqlWDlRqp~r  211 (839)
T KOG0269|consen  140 DFHSTEPNILISGS--QDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH------DSGYLQLWDLRQPDR  211 (839)
T ss_pred             eeccCCccEEEecC--CCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec------CCceEEEeeccCchh
Confidence            4554433 667777  7999999998865544444  2357999999995 66777777      35678899994  44


Q ss_pred             EEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+  .|..+|.++.|+|++.+|+|||.|++||
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence            4444  3678999999999999999999999987

>KOG0643|consensus

Probab=99.03  E-value=4.1e-09  Score=82.39  Aligned_cols=96  Identities=10%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      |.++-+|.+|.+++  .|.+..+|=..+|+.+-++.  ...|.+|.-+-+.++++||+      .|+++++||+ +|+++
T Consensus        16 iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS------AD~t~kLWDv~tGk~l   87 (327)
T KOG0643|consen   16 IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS------ADQTAKLWDVETGKQL   87 (327)
T ss_pred             EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc------ccceeEEEEcCCCcEE
Confidence            46789999999999  69999999998999988764  35799999999999999999      7999999999 69999


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ..+. ...|..+.|+++|..++-..++.
T Consensus        88 a~~k~~~~Vk~~~F~~~gn~~l~~tD~~  115 (327)
T KOG0643|consen   88 ATWKTNSPVKRVDFSFGGNLILASTDKQ  115 (327)
T ss_pred             EEeecCCeeEEEeeccCCcEEEEEehhh
Confidence            9987 66899999999999877665443

>KOG1034|consensus

Probab=99.02  E-value=1.3e-09  Score=87.06  Aligned_cols=92  Identities=12%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-CcEEEec---
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF---   80 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~---   80 (143)
                      -+||++|  .-|.|++.|+.++++...+  |+..|+.|.+.|+. ++++++|      .|..+++|+++ +.++.-+   
T Consensus       106 p~la~~G--~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~svRlwnI~~~~Cv~VfGG~  177 (385)
T KOG1034|consen  106 PFLAAGG--YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDHSVRLWNIQTDVCVAVFGGV  177 (385)
T ss_pred             eeEEeec--ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCceEEEEeccCCeEEEEeccc
Confidence            3788888  4799999999988776553  45679999999986 6888888      79999999996 5666543   


Q ss_pred             --cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 --NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        |.+.|.++.|+++|.+|+|++.|..++
T Consensus       178 egHrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  178 EGHRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             ccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence              467899999999999999999999887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=3.4e-09  Score=87.95  Aligned_cols=99  Identities=10%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .+|||||+.|+..+.. .+..|.+||+.+++..... ....+...+|||||+.|+.....   .....+++||..+..+.
T Consensus       207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ---GGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec---CCCceEEEEECCCCceE
Confidence            3799999999987642 3468999999887643222 12456788999999988755431   01234777788765554


Q ss_pred             ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          79 RFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        79 ~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...  ........|+|||+.|+..++
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~  309 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESD  309 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEEC
Confidence            443  334567899999999987654

>KOG0313|consensus

Probab=99.02  E-value=1.2e-09  Score=88.53  Aligned_cols=98  Identities=15%  Similarity=0.324  Sum_probs=77.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc--eEE-eee--ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVM-NAA--EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~-~~~--~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |..+|..++||+|+  .|..+++||..++  ..+ +++  |...|+++.|+|...| |+++|      .||++++||+..
T Consensus       306 i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S------~D~t~klWDvRS  377 (423)
T KOG0313|consen  306 ISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS------YDNTVKLWDVRS  377 (423)
T ss_pred             eecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe------cCCeEEEEEecc
Confidence            45689999999998  6999999997653  332 222  3457999999999886 56666      699999999952


Q ss_pred             -c-EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 -K-IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 -~-~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       + .|+..  +.+.|.++.|+ +|..|+||+.|.+||
T Consensus       378 ~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  378 TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             CCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence             2 56654  46789999999 788999999999886

>KOG0294|consensus

Probab=99.01  E-value=1.4e-09  Score=86.41  Aligned_cols=96  Identities=14%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCC--EEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      .=+|+|+|+||  .|-+|+|||+.+.+.+...  |...|+.+.|.|+-.  +|++|+      .|+.|.+|++. -.++.
T Consensus        50 AVs~~~~aSGs--sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s------dDG~i~iw~~~~W~~~~  121 (362)
T KOG0294|consen   50 AVSGPYVASGS--SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS------DDGHIIIWRVGSWELLK  121 (362)
T ss_pred             EecceeEeccC--CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec------CCCcEEEEEcCCeEEee
Confidence            35799999999  6899999999876554432  346799999999886  899999      69999999995 55666


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+  |...|++++.+|.|+.-+|.+.|+.+|
T Consensus       122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr  152 (362)
T KOG0294|consen  122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLR  152 (362)
T ss_pred             eecccccccceeEecCCCceEEEEcCCceee
Confidence            54  466799999999999999999999887

>KOG2096|consensus

Probab=99.00  E-value=1.6e-09  Score=86.53  Aligned_cols=94  Identities=14%  Similarity=0.207  Sum_probs=73.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-------CceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-------DFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-------~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      ++|||+.+.+++.+  .||+++|||++       ..+.+.++.      ......++.||.|+-||.+.       ...+
T Consensus       284 ~aFsn~S~r~vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l  354 (420)
T KOG2096|consen  284 AAFSNSSTRAVTVS--KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDL  354 (420)
T ss_pred             eeeCCCcceeEEEe--cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCce
Confidence            48999999999999  69999999987       223333331      12345899999999999887       5678


Q ss_pred             EEEee-cCcEEEe---ccCCcEEEEEEeeCCCeeeecCch
Q psy5876          68 WQWSF-QGKIIKR---FNSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        68 ~iW~~-~g~~l~~---~~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +++.. +|+....   .+...|.+++|+|+|+.++|+++.
T Consensus       355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             EEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence            88887 5765443   457899999999999999999764

>KOG0316|consensus

Probab=99.00  E-value=2.7e-09  Score=82.31  Aligned_cols=104  Identities=11%  Similarity=0.112  Sum_probs=78.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcc-------------------
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWK-------------------   60 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~-------------------   60 (143)
                      +-+.|...+++||  .|..+.+||+++|+.+.++.  ...|+.+.|+.+..-+++||-+..                   
T Consensus        66 ~~s~Dnskf~s~G--gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   66 ALSSDNSKFASCG--GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             cccccccccccCC--CCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh
Confidence            3467788899988  69999999999999998874  357999999999999999983100                   


Q ss_pred             -----------------eecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 -----------------TKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 -----------------~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                                       -+.|++++.||+. |++..-.-..+|++++|+|+++..+.++.+.++|
T Consensus       144 a~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlr  208 (307)
T KOG0316|consen  144 AKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLR  208 (307)
T ss_pred             hcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence                             0234444455542 3333333356899999999999999999998887

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=2e-09  Score=89.29  Aligned_cols=103  Identities=12%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEE--ECCCceEEee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFV--DTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iW--d~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      ++|||||++|+.+.. .+|.+.||  |+++++.... .+...+...+|||||++|+.++.     .++...||+++  +.
T Consensus       253 ~~wSPDG~~La~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~-----~~g~~~I~~~~~~~~  326 (429)
T PRK01742        253 PAFSPDGSRLAFASS-KDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD-----RSGSPQVYRMSASGG  326 (429)
T ss_pred             eeECCCCCEEEEEEe-cCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC-----CCCCceEEEEECCCC
Confidence            479999999998753 36766655  6655543322 22345788999999999988774     35667788763  43


Q ss_pred             EEEeccCCcEEEEEEeeCCCeeeecCchhhHHhhh
Q psy5876          76 IIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSL  110 (143)
Q Consensus        76 ~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~  110 (143)
                      ......... +...|+|+|+.|+..+.+..++-++
T Consensus       327 ~~~~l~~~~-~~~~~SpDG~~ia~~~~~~i~~~Dl  360 (429)
T PRK01742        327 GASLVGGRG-YSAQISADGKTLVMINGDNVVKQDL  360 (429)
T ss_pred             CeEEecCCC-CCccCCCCCCEEEEEcCCCEEEEEC
Confidence            332222222 5678999999998877665444333

>KOG0639|consensus

Probab=98.98  E-value=6.2e-10  Score=93.10  Aligned_cols=97  Identities=12%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++.|||.+...++.  .||.|.|||+.+...+..+.  ..++++|..|+||..|=||+      .|++++.||+ +|+++
T Consensus       515 La~spDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG------lDntvRcWDlregrql  586 (705)
T KOG0639|consen  515 LAISPDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG------LDNTVRCWDLREGRQL  586 (705)
T ss_pred             hhcCCccceeeeec--cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC------Cccceeehhhhhhhhh
Confidence            46799999888886  59999999999988887764  35799999999999999999      7999999999 68877


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeecCchhh
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .+.. ...|.++...|.+.+|+-|=+...
T Consensus       587 qqhdF~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  587 QQHDFSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             hhhhhhhhheecccCCCccceeeecccCc
Confidence            6654 678999999999999998755443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=6.5e-09  Score=86.30  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe--ecCcE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS--FQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~--~~g~~   76 (143)
                      .+|||||+.|+..+.. ....|.+||+.+++...... ...+...+|||||+.|+....     .++...||.  .++..
T Consensus       201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d~~~~~  275 (427)
T PRK02889        201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALS-----RDGNSQIYTVNADGSG  275 (427)
T ss_pred             ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc-----cCCCceEEEEECCCCC
Confidence            3799999999987642 23469999998876433221 235678999999999986543     355555554  45555


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +....  ........|+|||+.|+..++
T Consensus       276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~  303 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFSPDGRSIYFTSD  303 (427)
T ss_pred             cEECCCCCCCCcCeEEcCCCCEEEEEec
Confidence            54432  234567889999999886554

>KOG0288|consensus

Probab=98.97  E-value=1.1e-09  Score=89.33  Aligned_cols=63  Identities=14%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c--CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      +.|||+|.|+|+|+  .||.|.||++.++++-....  +  ..|++++|+|.|.++++++      .+..+.+|.
T Consensus       393 vvfSpd~~YvaAGS--~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad------k~~~v~lW~  459 (459)
T KOG0288|consen  393 VVFSPDGSYVAAGS--ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD------KQKAVTLWT  459 (459)
T ss_pred             eEECCCCceeeecc--CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc------CCcceEecC
Confidence            46999999999999  69999999999998766542  2  3699999999999999999      688888883

>KOG0641|consensus

Probab=98.96  E-value=5.6e-09  Score=80.43  Aligned_cols=97  Identities=16%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      +-.|.|+.||+|-  .|....+||+..++.++.++ | ..|.++.|||...|++|||      -|+.|++=|++|.+-++
T Consensus       238 ~vdpsgrll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s------yd~~ikltdlqgdla~e  309 (350)
T KOG0641|consen  238 AVDPSGRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS------YDMKIKLTDLQGDLAHE  309 (350)
T ss_pred             EECCCcceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec------ccceEEEeecccchhhc
Confidence            5579999999997  68999999999999888874 3 4799999999999999999      69999999999876544


Q ss_pred             c-------cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          80 F-------NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        80 ~-------~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .       +.+.+..+.|+|..-.++|.+.|+++
T Consensus       310 l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  310 LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             CceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence            2       46788899999999999999988764

>KOG0264|consensus

Probab=98.96  E-value=2.6e-09  Score=87.58  Aligned_cols=100  Identities=13%  Similarity=0.291  Sum_probs=73.0

Q ss_pred             CeEecCCCE-EEEEecCCCCeEEEEECCCce-EEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876           1 MKLRMRGTH-IVLAELRDTGSLEFVDTGDFS-VMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G   74 (143)
Q Consensus         1 i~~SPdG~~-las~~~~~dg~i~iWd~~~~~-~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g   74 (143)
                      ++|+|-+.+ ||+|+  .|++|.+||+.+.. ++.+++.  ..|..+.|||.-..++..|.     .|+.+.+||+.  |
T Consensus       278 ~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  278 VAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEeccccc
Confidence            478887665 45566  69999999988754 4556542  47999999999886555543     69999999994  4


Q ss_pred             cE-------------EEe--ccCCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          75 KI-------------IKR--FNSPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        75 ~~-------------l~~--~~~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                      ..             ++.  -|...|.+++|+|.-+++ +|+++|..++
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq  399 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ  399 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence            32             222  246689999999998765 5778886554

>KOG2106|consensus

Probab=98.94  E-value=1.5e-08  Score=84.90  Aligned_cols=96  Identities=19%  Similarity=0.373  Sum_probs=69.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~   78 (143)
                      .|.|.| .||.|.  ..|..-+.|+++...+... +..+++.++|||||.+||.||      .|+.|+||-+  +|+...
T Consensus       414 ~fhpsg-~va~Gt--~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  414 DFHPSG-VVAVGT--ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             eccCcc-eEEEee--ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEECCCCcEEE
Confidence            355555 555554  3455555555553333322 245799999999999999999      6999999988  366655


Q ss_pred             ec---cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          79 RF---NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        79 ~~---~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +.   +..+|.++.|++|++.|.+.+.|-+|
T Consensus       485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei  515 (626)
T KOG2106|consen  485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEI  515 (626)
T ss_pred             EeeeecCceeEEeeecCCCceEEeccCceEE
Confidence            43   46799999999999999998877654

>KOG0299|consensus

Probab=98.93  E-value=3.1e-09  Score=87.66  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=81.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE----ee----------------eccCceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NA----------------AEHHQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~----------------~~~~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      +++|||++++.+++  .+|+|.=|++.+++..    .+                .|...+.+++-||||+|||||+    
T Consensus       148 vals~d~~~~fsas--k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg----  221 (479)
T KOG0299|consen  148 VALSPDDKRVFSAS--KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGG----  221 (479)
T ss_pred             EEeeccccceeecC--CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecC----
Confidence            46899999999999  6999999998876532    11                1113588999999999999999    


Q ss_pred             eecCCcEEEEeec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 TKADTGYWQWSFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 ~~~D~~i~iW~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .|+.|.||+++ .+.++.  -|.+.|.+++|+-....|.+++.|..++
T Consensus       222 --~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk  269 (479)
T KOG0299|consen  222 --RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK  269 (479)
T ss_pred             --CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceE
Confidence              69999999995 555554  3578999999999999999999999887

>KOG4497|consensus

Probab=98.92  E-value=1.4e-08  Score=81.62  Aligned_cols=114  Identities=11%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecC-------------c-------
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSL-------------W-------   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~-------------~-------   59 (143)
                      ++|||||+.|+.-+. .+-.|.+|.+.+.+.... .....+..++|+|||+|.|.++.-             |       
T Consensus        97 ~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~  175 (447)
T KOG4497|consen   97 ISWSPDGRHILLTSE-FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK  175 (447)
T ss_pred             eeECCCcceEeeeec-ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence            479999987766543 478999999998766543 234568999999999999988741             1       


Q ss_pred             ---------cee-cCCcEEEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhch
Q psy5876          60 ---------KTK-ADTGYWQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTP  115 (143)
Q Consensus        60 ---------~~~-~D~~i~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~  115 (143)
                               .|. .++.+.+||-- ...+...+ ..++..++|+|-++.|+-|+.|+.+|       |.+.+|..
T Consensus       176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh  250 (447)
T KOG4497|consen  176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH  250 (447)
T ss_pred             CCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence                     011 23345555541 12222223 46899999999999999999999998       55556553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.1e-08  Score=84.98  Aligned_cols=99  Identities=11%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .+|||||+.|+..+.. .+..|.+||+.+++...... .......+|||||++|+...+.   ..+..+++||+.+..+.
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~---~g~~~Iy~~d~~~g~~~  285 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR---DGNPEIYVMDLGSRQLT  285 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC---CCCceEEEEECCCCCeE
Confidence            3699999999987643 23479999998776432221 2345578999999988754321   02336889999655444


Q ss_pred             ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          79 RFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        79 ~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...  .......+|+|||+.|+..++
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd  311 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSD  311 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEEC
Confidence            432  234567899999999887654

>KOG1063|consensus

Probab=98.92  E-value=3.4e-09  Score=91.01  Aligned_cols=98  Identities=15%  Similarity=0.245  Sum_probs=70.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eee---e-ccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNA---A-EHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~---~-~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      |+|||||+||++.+  .|.++.+|....... -..   . .|. -|.++.|+||+.||||+|      .|+.|++|... 
T Consensus       578 l~FSpdg~~LLsvs--RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~  649 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVS--RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPD  649 (764)
T ss_pred             EEECCCCcEEEEee--cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccC
Confidence            58999999999999  699999999653211 111   1 233 479999999999999999      69999999984 


Q ss_pred             C--cEEEec----cCCcEEEEEEeeCCCe----eeecC-chhhH
Q psy5876          74 G--KIIKRF----NSPTFCQLRWRPRPAS----LLSKE-QVDKI  106 (143)
Q Consensus        74 g--~~l~~~----~~~~v~~l~wsP~~~~----l~s~s-~d~~i  106 (143)
                      +  +.+.+.    ....|..++|.|--..    +++.+ +-++|
T Consensus       650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI  693 (764)
T KOG1063|consen  650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI  693 (764)
T ss_pred             chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence            4  344331    2568999999876543    55544 34444

>KOG1524|consensus

Probab=98.92  E-value=6e-09  Score=87.84  Aligned_cols=96  Identities=14%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC------------------------------ceEE-eee----------cc-Cc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD------------------------------FSVM-NAA----------EH-HQ   39 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~------------------------------~~~~-~~~----------~~-~~   39 (143)
                      .|||||.=|+++|  .||.|++|....                              +.+. +.+          .| +-
T Consensus       111 RW~~dGtgLlt~G--EDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGi  188 (737)
T KOG1524|consen  111 RWSPDGAGLLTAG--EDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGL  188 (737)
T ss_pred             ccCCCCceeeeec--CCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcE
Confidence            5999999999999  699999999540                              1111 000          13 24


Q ss_pred             eEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec--c-----------------------------CCcEEEE
Q psy5876          40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF--N-----------------------------SPTFCQL   88 (143)
Q Consensus        40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~--~-----------------------------~~~v~~l   88 (143)
                      |.++.|+|.+..|++|+      .|=.++|||.+|+.++..  +                             ...|..+
T Consensus       189 iL~~~W~~~s~lI~sgG------ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnl  262 (737)
T KOG1524|consen  189 VLSLSWSTQSNIIASGG------EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNL  262 (737)
T ss_pred             EEEeecCccccceeecC------CceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEE
Confidence            78899999999999998      688899999998766431  1                             1246777


Q ss_pred             EEeeCCCeeeecCchhh
Q psy5876          89 RWRPRPASLLSKEQVDK  105 (143)
Q Consensus        89 ~wsP~~~~l~s~s~d~~  105 (143)
                      +|||||..++.|...+.
T Consensus       263 sWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  263 SWSADGTQATCGTSTGQ  279 (737)
T ss_pred             EEcCCCceeeccccCce
Confidence            78888877777655543

>KOG0646|consensus

Probab=98.92  E-value=4.3e-09  Score=86.87  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=80.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-----
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-----   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-----   74 (143)
                      +=+|+|.||+.|+  ..|.|++|.+.+|+++..+.  ...|+++.|+-||.+|+|||      .|+.|.+|++..     
T Consensus        88 ~s~n~G~~l~ag~--i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs------kDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   88 ASSNLGYFLLAGT--ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS------KDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             ecCCCceEEEeec--ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC------CCccEEEEEEEeecccc
Confidence            4479999999997  57999999999999887663  35799999999999999999      799999998731     


Q ss_pred             -----cEEEec--cCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876          75 -----KIIKRF--NSPTFCQLRWRPRP--ASLLSKEQVDKIK  107 (143)
Q Consensus        75 -----~~l~~~--~~~~v~~l~wsP~~--~~l~s~s~d~~i~  107 (143)
                           ..++.+  |.-.|.++...+.|  .+|+|+|+|.++|
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence                 134444  35578888887764  6899999999986

>KOG0310|consensus

Probab=98.92  E-value=9.7e-09  Score=85.13  Aligned_cols=96  Identities=11%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce-EEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      .+=|.|..||+||   -+.|++||+-+|. .+...  |+..|+++++..||+.|++++      .|+.+++||.+ =+.+
T Consensus       203 l~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  203 LALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVKVFDTTNYKVV  273 (487)
T ss_pred             EEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc------cccceEEEEccceEEE
Confidence            4569999999997   4689999988654 44332  456899999999999999999      79999999975 4567


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +.+. .++|.+++.+|+++.++-|-.++.+
T Consensus       274 ~s~~~~~pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  274 HSWKYPGPVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             EeeecccceeeEEecCCCceEEEeccccee
Confidence            7776 7899999999999999998777654

>KOG0281|consensus

Probab=98.91  E-value=9.2e-10  Score=88.79  Aligned_cols=90  Identities=18%  Similarity=0.289  Sum_probs=74.8

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc-
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-   81 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~-   81 (143)
                      |.+||++++  .|.+|++|++.+++.+.+.+.  .+|-++.+  .||++++||      .|++|++||+. |.+++... 
T Consensus       329 d~kyIVsAS--gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS------SDntIRlwdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  329 DDKYIVSAS--GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS------SDNTIRLWDIECGACLRVLEG  398 (499)
T ss_pred             ccceEEEec--CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC------CCceEEEEeccccHHHHHHhc
Confidence            567999998  699999999999999988753  35666655  589999999      59999999995 88887653 


Q ss_pred             -CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          82 -SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        82 -~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       ..-|.++.|  |.+.++||+.|++||
T Consensus       399 HEeLvRciRF--d~krIVSGaYDGkik  423 (499)
T KOG0281|consen  399 HEELVRCIRF--DNKRIVSGAYDGKIK  423 (499)
T ss_pred             hHHhhhheee--cCceeeeccccceEE
Confidence             556887766  678999999999988

>KOG0277|consensus

Probab=98.91  E-value=1.3e-08  Score=79.27  Aligned_cols=102  Identities=12%  Similarity=0.225  Sum_probs=78.4

Q ss_pred             EecC-CCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--CcE
Q psy5876           3 LRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ--GKI   76 (143)
Q Consensus         3 ~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~--g~~   76 (143)
                      |++- ++.+++++.  ||+|++|+.+...-+.++. | .-|+...||| .+..++++|      .|+..++||+.  |+.
T Consensus       112 wn~~~r~~~ltsSW--D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S------gd~~l~lwdvr~~gk~  183 (311)
T KOG0277|consen  112 WNTVRRRIFLTSSW--DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS------GDGTLRLWDVRSPGKF  183 (311)
T ss_pred             cccccceeEEeecc--CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc------CCceEEEEEecCCCce
Confidence            4544 345566665  8999999999887777774 3 3589999999 466889999      69999999995  776


Q ss_pred             EEe-ccCCcEEEEEEeeC-CCeeeecCchhhHH----hhhhh
Q psy5876          77 IKR-FNSPTFCQLRWRPR-PASLLSKEQVDKIK----KSLKK  112 (143)
Q Consensus        77 l~~-~~~~~v~~l~wsP~-~~~l~s~s~d~~i~----~~~~~  112 (143)
                      +.. .|...+.++.|+-- ...|+|++-|..||    .|+|+
T Consensus       184 ~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  184 MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence            553 35668999999655 46778999999998    66664

>KOG0313|consensus

Probab=98.90  E-value=3.5e-09  Score=85.79  Aligned_cols=98  Identities=14%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec---CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ---GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~---g~~   76 (143)
                      |-|+| ...+.+++  -|.+|+.||+.++.++.+.. ....++++.+|..++||+|+      .|..+++||..   |..
T Consensus       266 V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs------sdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  266 VVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS------SDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             EEEcC-CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecC------CCCceeecCCCCCCCce
Confidence            35777 56777888  59999999999998877653 46799999999999999999      59999999993   444


Q ss_pred             EEe---ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          77 IKR---FNSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~---~~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      +..   -|.+.|.++.|+|-.. .|+|++.|+++|
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            432   3577899999999885 677999999987

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=1.6e-08  Score=84.11  Aligned_cols=96  Identities=11%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~   75 (143)
                      +.|||||++|+.... .+|  .|.+||+++++...... ...+...+|||||++|+..+.     .++  .++++++.+.
T Consensus       248 ~~~SPDG~~La~~~~-~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~-----~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        248 PAFSPDGSKLAFALS-KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSD-----QAGRPQVYKVNINGG  321 (429)
T ss_pred             eEECCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeC-----CCCCceEEEEECCCC
Confidence            379999999987632 244  58889998776543322 245788999999999998884     223  3444466554


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .....  .........|+|||+.|+..+.
T Consensus       322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        322 APQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence            33332  2334567899999999987654

>KOG0276|consensus

Probab=98.89  E-value=1.5e-08  Score=86.66  Aligned_cols=97  Identities=15%  Similarity=0.215  Sum_probs=83.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIK   78 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~   78 (143)
                      |=+.-+++++|+  +|..|++++.+|++.+..|+.  ..+.+|+-+|.--|++|+|      .|-+|++|+.++.  +.+
T Consensus        63 fiaRknWiv~Gs--DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS------DDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   63 FIARKNWIVTGS--DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS------DDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             eeeccceEEEec--CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC------CccEEEEeeccCceeeee
Confidence            445667999998  799999999999999999864  3699999999999999999      5899999999876  333


Q ss_pred             --eccCCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876          79 --RFNSPTFCQLRWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        79 --~~~~~~v~~l~wsP~~-~~l~s~s~d~~i~  107 (143)
                        +-|..-|-+++|+|.. ...+|++-|++||
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence              3356779999999976 6899999999998

>KOG0771|consensus

Probab=98.89  E-value=1.2e-08  Score=83.27  Aligned_cols=98  Identities=10%  Similarity=0.136  Sum_probs=75.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE----------------------------Eee--e---------------
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV----------------------------MNA--A---------------   35 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~----------------------------~~~--~---------------   35 (143)
                      +.|||||++||+-+  .| ..++|+++++..                            +..  .               
T Consensus       192 L~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  192 LDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG  268 (398)
T ss_pred             ceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence            57999999999988  46 899999886510                            000  0               


Q ss_pred             -----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEE---eccCCcEEEEEEeeCCCeeeec
Q psy5876          36 -----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIK---RFNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        36 -----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~---~~~~~~v~~l~wsP~~~~l~s~  100 (143)
                                 .+..+++++-|+||+++|-|+      +|+.|-|++... ++++   +.|...|..+.|+|+...+++.
T Consensus       269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT------~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGT------MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             ccccchhhhhhccCcceeEEEcCCCcEEEEec------cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence                       023688999999999999999      799999999853 3333   2355689999999999999998


Q ss_pred             CchhhHH
Q psy5876         101 EQVDKIK  107 (143)
Q Consensus       101 s~d~~i~  107 (143)
                      +.+.+++
T Consensus       343 Ss~~~~~  349 (398)
T KOG0771|consen  343 SSDNEAA  349 (398)
T ss_pred             ccCCcee
Confidence            8776654

>KOG0308|consensus

Probab=98.89  E-value=6e-09  Score=89.09  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCc--eEEeee-----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAA-----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~-----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      .++...+|+||  .|+.|.+||++++  +.+.++           +..++++++-+|.|..|++|+      .++-+++|
T Consensus       127 ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg------tek~lr~w  198 (735)
T KOG0308|consen  127 AKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG------TEKDLRLW  198 (735)
T ss_pred             ccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC------cccceEEe
Confidence            56888899999  5899999999976  233222           124689999999999999998      48899999


Q ss_pred             ee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhchh
Q psy5876          71 SF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTPA  116 (143)
Q Consensus        71 ~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~~  116 (143)
                      |. .++.+.+.  |.+.|..+..++||.+++|+|.|++||       +.+.+|..+
T Consensus       199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             ccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence            99 46655543  588999999999999999999999998       555555444

>KOG0264|consensus

Probab=98.87  E-value=1.1e-08  Score=83.91  Aligned_cols=99  Identities=18%  Similarity=0.291  Sum_probs=71.6

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCc--eEEeee--ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDF--SVMNAA--EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~--~~~~~~--~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+|--. .+++++  .|+.+.|||+.+.  +.....  +...+.+++|+|-+. .|||||      .|+++++||+. 
T Consensus       233 V~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------~D~tV~LwDlRn  304 (422)
T KOG0264|consen  233 VAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------ADKTVALWDLRN  304 (422)
T ss_pred             hhccccchhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc------CCCcEEEeechh
Confidence            35666544 566677  6999999999852  222222  236899999999666 567777      69999999995 


Q ss_pred             -CcEEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          74 -GKIIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                       .+.++.+  |.+.|..+.|+|+.. .|+|.+.|+.+.
T Consensus       305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence             4466654  478999999999986 555777776543

>KOG0294|consensus

Probab=98.86  E-value=2.2e-08  Score=79.75  Aligned_cols=95  Identities=18%  Similarity=0.388  Sum_probs=74.0

Q ss_pred             eEecCCC--EEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           2 KLRMRGT--HIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         2 ~~SPdG~--~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      .|.|+-.  .|++|+  .||.|.+|++..++++.++.  ...|+.++.+|.|+.-++.+      .|..+++|++ .|+.
T Consensus        90 ~F~~~~S~shLlS~s--dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg------~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   90 KFYPPLSKSHLLSGS--DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG------GDQVLRTWNLVRGRV  161 (362)
T ss_pred             EecCCcchhheeeec--CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc------CCceeeeehhhcCcc
Confidence            5667765  888888  79999999999999888763  34699999999999988888      5999999999 6775


Q ss_pred             EEecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876          77 IKRFN-SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        77 l~~~~-~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      -+..+ .+.-..+.|+|.|.+.+-.+.++
T Consensus       162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  162 AFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             ceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            44332 22333389999999777665553

>KOG0302|consensus

Probab=98.85  E-value=1.5e-08  Score=82.24  Aligned_cols=96  Identities=17%  Similarity=0.329  Sum_probs=68.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc---eEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      |+|+-+-.+||+|+  +||+++|||+...   +.+.++  |..+|++|.|+|...-++.++.     .|+.|.|||+.  
T Consensus       308 ISWnr~~~lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----~D~QitiWDlsvE  380 (440)
T KOG0302|consen  308 ISWNRREPLLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----EDNQITIWDLSVE  380 (440)
T ss_pred             EEccCCcceeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----CCCcEEEEEeecc
Confidence            57888888999998  7999999998853   344444  4568999999997654443332     59999999982  


Q ss_pred             -C----------c-------EEEecc--CCcEEEEEEeeCCC-eeeecCchh
Q psy5876          74 -G----------K-------IIKRFN--SPTFCQLRWRPRPA-SLLSKEQVD  104 (143)
Q Consensus        74 -g----------~-------~l~~~~--~~~v~~l~wsP~~~-~l~s~s~d~  104 (143)
                       .          .       +++ .|  ...|..++|+|+-+ .|+|.+.|+
T Consensus       381 ~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  381 ADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             CChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc
Confidence             1          1       111 12  45688999999865 666776665

>KOG1446|consensus

Probab=98.85  E-value=4.6e-08  Score=77.49  Aligned_cols=101  Identities=14%  Similarity=0.199  Sum_probs=86.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      |.||++|.+|++++  .|.+++|||..+++++.+.+.  .++..++|......++.++.    +.|.+|+.-++ +.+.|
T Consensus        20 l~fs~~G~~litss--~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt----k~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   20 LDFSDDGLLLITSS--EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST----KEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             EEecCCCCEEEEec--CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC----CCCCceEEEEeecCceE
Confidence            57999999999988  578999999999998887754  47999999888777777774    25899999999 57778


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +-+  |...|.+++-+|-+...+|++.|++||
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvr  125 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVR  125 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEE
Confidence            765  577999999999999999999999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=3.5e-08  Score=81.94  Aligned_cols=98  Identities=13%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .+|||||+.|+.... .+|  .|.+||+.+++...-..+ ......+|||||++|+..+...   ....++++|.+|...
T Consensus       251 ~~~SPDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~---g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        251 PRFSPDGRKVVMSLS-QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS---GSPQLYVMNADGSNP  326 (435)
T ss_pred             cEECCCCCEEEEEEe-cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC---CCCeEEEEECCCCCe
Confidence            379999998875432 344  477778887654332222 3456799999999999887410   134688888877654


Q ss_pred             Eecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          78 KRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ....  ...+....|+|+|+.|+-.+.
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             EEeecCCCcccCeEECCCCCEEEEEEc
Confidence            4432  345667899999999986543

>KOG2055|consensus

Probab=98.84  E-value=1.4e-08  Score=83.97  Aligned_cols=94  Identities=12%  Similarity=0.134  Sum_probs=74.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C--ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--   75 (143)
                      ++||.||+.|.+++  .+|.|.+||++...++.++.. .  .-++++-|++|+|||+||      ..+-|.|||.+.-  
T Consensus       350 ~~fsSdsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS------~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  350 FTFSSDSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS------DSGIVNIYDGNSCFA  421 (514)
T ss_pred             EEEecCCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc------CcceEEEeccchhhc
Confidence            47999999998887  589999999999888888743 2  347899999999999999      4677889996432  


Q ss_pred             -----EEEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          76 -----IIKRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        76 -----~l~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                           .+....  ...|.++.|+|+++.|+-+|.
T Consensus       422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence                 233221  457999999999999887664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.83  E-value=4.5e-08  Score=79.94  Aligned_cols=98  Identities=12%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             eEecCCCEEEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      +|||||++||.+... ....|.+||+.+++..... ....+..++|+|||+.|+.....   ..+..+++|++.+.....
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~---~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSK---DGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECC---CCCccEEEEECCCCCEEE
Confidence            699999999987642 1257999999887543322 22346679999999988765421   023468888986554433


Q ss_pred             cc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          80 FN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        80 ~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..  ........|+|+|+.|+..++
T Consensus       273 l~~~~~~~~~~~~s~dg~~l~~~s~  297 (417)
T TIGR02800       273 LTNGPGIDTEPSWSPDGKSIAFTSD  297 (417)
T ss_pred             CCCCCCCCCCEEECCCCCEEEEEEC
Confidence            32  233456789999999886554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=4.9e-08  Score=81.68  Aligned_cols=95  Identities=13%  Similarity=0.174  Sum_probs=64.6

Q ss_pred             eEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCcE
Q psy5876           2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~~   76 (143)
                      .|||||++|+..+.. ....|.+||+.+++.  +.... ......+|||||++|+....     .++  .++++|+++..
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLS-----KDGQPEIYVVDIATKA  297 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEe-----CCCCeEEEEEECCCCC
Confidence            799999999987642 123688899887654  22222 23457899999999987653     233  47777886555


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +....  .......+|+|||+.|+..++
T Consensus       298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~  325 (448)
T PRK04792        298 LTRITRHRAIDTEPSWHPDGKSLIFTSE  325 (448)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEEC
Confidence            44432  334667899999998876543

>KOG1445|consensus

Probab=98.82  E-value=7.6e-09  Score=88.72  Aligned_cols=104  Identities=11%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             eEecC-CCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876           2 KLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I   76 (143)
Q Consensus         2 ~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~   76 (143)
                      .|.|= ...||+++.  |-+|++||+.+++....+  |...|.+++||||||.+||.+      .|+++++|....+  .
T Consensus       684 RfHPLAadvLa~asy--d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  684 RFHPLAADVLAVASY--DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEPRSREQP  755 (1012)
T ss_pred             EecchhhhHhhhhhc--cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCCCCCCCc
Confidence            45553 346777774  899999999987765544  446899999999999999999      7999999999533  4


Q ss_pred             EEecc---CCcEEEEEEeeCCCeeeecCchhhHHhhhhhh
Q psy5876          77 IKRFN---SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKY  113 (143)
Q Consensus        77 l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~  113 (143)
                      +++-.   ..+--.+.|-=+|.+++..+.|+.-.+.+.-|
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y  795 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMY  795 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhh
Confidence            55432   23445678888999999998887766655544

>KOG4497|consensus

Probab=98.82  E-value=6.5e-08  Score=77.78  Aligned_cols=81  Identities=10%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             CCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE--eccCCcEEEEEEee
Q psy5876          17 DTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK--RFNSPTFCQLRWRP   92 (143)
Q Consensus        17 ~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~--~~~~~~v~~l~wsP   92 (143)
                      .++.|.+|++...+-..+.  ...+++.++||||||+|...+.     .|-.|.+|++..+...  ...+..+..++|+|
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse-----F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~  143 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE-----FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP  143 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec-----ceeEEEEEEeccceeEEecccccCceeEEECC
Confidence            3677788887655433333  2357999999999999999885     6888999999654333  23467889999999


Q ss_pred             CCCeeeecCc
Q psy5876          93 RPASLLSKEQ  102 (143)
Q Consensus        93 ~~~~l~s~s~  102 (143)
                      ||+..+-.+.
T Consensus       144 dg~f~ai~sR  153 (447)
T KOG4497|consen  144 DGQFCAILSR  153 (447)
T ss_pred             CCceeeeeec
Confidence            9998877654

>KOG0278|consensus

Probab=98.82  E-value=2.2e-08  Score=77.97  Aligned_cols=95  Identities=13%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRF   80 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~   80 (143)
                      |=-..+.|+++.  .|++||+||..+++.+++++. .+|+++..|+||++|.++-       .++|+.||... .+|...
T Consensus       151 wc~eD~~iLSSa--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  151 WCHEDKCILSSA--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             EeccCceEEeec--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-------CceeEEeccccccceeec
Confidence            333345667765  699999999999998888754 5799999999999998877       56899999963 355554


Q ss_pred             c-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          81 N-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        81 ~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      . +-.|.+.+.+|+-..++.|++|-.+
T Consensus       222 k~P~nV~SASL~P~k~~fVaGged~~~  248 (334)
T KOG0278|consen  222 KMPCNVESASLHPKKEFFVAGGEDFKV  248 (334)
T ss_pred             cCccccccccccCCCceEEecCcceEE
Confidence            4 6689999999999999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.81  E-value=5.7e-08  Score=77.36  Aligned_cols=100  Identities=8%  Similarity=0.153  Sum_probs=71.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-c---eEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F---SVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~---~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      |+|+|+|++|.+++. .++.|.+|++++ +   +.+...++ ..+..++++|||+++++++.     .++.|.+||++  
T Consensus        85 i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~  158 (330)
T PRK11028         85 ISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDD  158 (330)
T ss_pred             EEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCC
Confidence            478999999999987 489999999863 2   22333322 45778899999999977774     57899999995  


Q ss_pred             CcEEE------ec-cCCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876          74 GKIIK------RF-NSPTFCQLRWRPRPASLLSKEQ-VDKI  106 (143)
Q Consensus        74 g~~l~------~~-~~~~v~~l~wsP~~~~l~s~s~-d~~i  106 (143)
                      |.+..      .. ......+++|+|+|+++....+ +.+|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v  199 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV  199 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE
Confidence            33221      11 1335678999999999876654 4444

>KOG0639|consensus

Probab=98.81  E-value=9.6e-09  Score=86.09  Aligned_cols=98  Identities=11%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-E
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-I   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~   76 (143)
                      ..+|||+.|++||.  -.++.|||+.+...  .....  ...|+.++.|||.+...++.      .|+.|.|||+..+ +
T Consensus       472 kL~pdgrtLivGGe--astlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc------sdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  472 KLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC------SDGNIAVWDLHNQTL  543 (705)
T ss_pred             EecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec------cCCcEEEEEccccee
Confidence            46899999999994  68999999775432  22222  24689999999999877776      4999999999766 4


Q ss_pred             EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.+  +.+.+.+|..++||..|-||+-|.++|
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvR  576 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR  576 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCcccee
Confidence            5555  478999999999999999999999988

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=5.6e-08  Score=80.28  Aligned_cols=98  Identities=9%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      +|||||++|+..+.. ....|.+||+.+++...... ...+...+|||||++|+.....   ..+..+++||+.+..+..
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~---~g~~~Iy~~d~~~~~~~~  281 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK---DGNPEIYVMDLASRQLSR  281 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc---CCCceEEEEECCCCCeEE
Confidence            799999999887642 12468899998775433221 2345578999999999855421   022367888987655444


Q ss_pred             cc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          80 FN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        80 ~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..  ........|+|||+.|+-.++
T Consensus       282 lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        282 VTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             cccCCCCcCCeEECCCCCEEEEEEC
Confidence            32  334567899999998875543

>KOG2055|consensus

Probab=98.81  E-value=2.1e-08  Score=82.94  Aligned_cols=96  Identities=9%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      .||+|++||..|  ..|.|.+--..|++.+.++.- ..+++++|+.||+.|..++      .++.|++||+. ..+++++
T Consensus       311 VShd~~fia~~G--~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~------~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  311 VSHDSNFIAIAG--NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG------GTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             ecCCCCeEEEcc--cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc------CCceEEEEecCCcceEEEE
Confidence            489999999999  589999999999988887753 5689999999999988887      58899999994 6678877


Q ss_pred             c-CCcE--EEEEEeeCCCeeeecCchhhH
Q psy5876          81 N-SPTF--CQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        81 ~-~~~v--~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      . .+.|  .+++-+++|.+|++||+.+.|
T Consensus       383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  383 VDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             eecCccceeeeeecCCCceEEeccCcceE
Confidence            5 3444  467778999999999987754

>KOG1009|consensus

Probab=98.80  E-value=9.9e-09  Score=83.70  Aligned_cols=98  Identities=14%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             eEecCCC-EEEEEecCCCCeEEEEECCCce------EEe---e--eccCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFS------VMN---A--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~------~~~---~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      .|.+++. .||+||  .|..|+||-++..+      .+.   .  .|+..|+.|.|+|+|..||+|+      .++.+.+
T Consensus        20 dfq~n~~~~laT~G--~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~------D~g~v~l   91 (434)
T KOG1009|consen   20 DFQKNSLNKLATAG--GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG------DGGEVFL   91 (434)
T ss_pred             EeccCcccceeccc--CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC------CCceEEE
Confidence            3556666 999999  69999999976321      111   1  2346799999999999999999      4788889


Q ss_pred             Eeec--------C-----c---EEEe---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSFQ--------G-----K---IIKR---FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~--------g-----~---~l~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |-..        .     +   .+.+   .+...+++++|+|++..+++++.|..++
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~  148 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR  148 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence            9654        2     1   1222   1346899999999999999999988765

>KOG1963|consensus

Probab=98.80  E-value=2.9e-08  Score=86.77  Aligned_cols=99  Identities=12%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--ce--EEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FS--VMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~--~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      .++||+|+++|+|.  .||.|.+|.--.  ..  ....  .|+.+|++++||+||.||.+|+      .++-+.+|.. +
T Consensus       211 ~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG------~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  211 VALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG------REGVLVLWQLET  282 (792)
T ss_pred             EEeccccceEEEec--cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc------cceEEEEEeecC
Confidence            36899999999998  689999998321  11  1122  3467999999999999999999      5778889999 4


Q ss_pred             CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++...--+ ..+|.++.|+||+......-+|..|+
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~  317 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH  317 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence            55222112 67899999999998777666665543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.80  E-value=5.8e-08  Score=77.30  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=69.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--c--eEEeeec---c-----CceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--F--SVMNAAE---H-----HQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~--~~~~~~~---~-----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      +.|+|||++|.++.. .+++|.+||++.  +  +.+.+..   .     .....+.++|||++++++..     .++.|.
T Consensus       180 ~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~  253 (330)
T PRK11028        180 MVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLIS  253 (330)
T ss_pred             EEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEE
Confidence            479999999988875 489999999862  2  3333321   1     12346899999999999863     578999


Q ss_pred             EEeec--CcEE---Eecc-CCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876          69 QWSFQ--GKII---KRFN-SPTFCQLRWRPRPASLLSKEQ-VDKI  106 (143)
Q Consensus        69 iW~~~--g~~l---~~~~-~~~v~~l~wsP~~~~l~s~s~-d~~i  106 (143)
                      +|+++  +..+   .... ......++++|+|+.|+++.+ +.+|
T Consensus       254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence            99983  4322   2222 224557899999999997664 4444

>KOG0277|consensus

Probab=98.79  E-value=2.4e-08  Score=77.74  Aligned_cols=100  Identities=17%  Similarity=0.278  Sum_probs=72.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeee-cc-CceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA-EH-HQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~-~~-~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|||+-.-++.+.. .||+++|||+.. -.++..+ +| ..|.++.|++--+ .++++|      -|++||+|+.+ ++
T Consensus        66 V~Wse~~e~~~~~a~-GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   66 VAWSENHENQVIAAS-GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLWDPNRPN  138 (311)
T ss_pred             eeecCCCcceEEEEe-cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEeecCCCCc
Confidence            578887654333322 499999999553 2345544 33 5899999999655 556665      69999999995 66


Q ss_pred             EEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      .+.++  +.+.|+...|+|.-+ .++++|.|++++
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR  173 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence            66665  467899999999865 566889998775

>KOG1332|consensus

Probab=98.79  E-value=2.6e-08  Score=77.19  Aligned_cols=93  Identities=14%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             CCEEEEEecCCCCeEEEEECCC-c--eEEeee--ccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeecCcEE--
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGD-F--SVMNAA--EHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQGKII--   77 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~-~--~~~~~~--~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~g~~l--   77 (143)
                      |++||+|+  .|++|+|+.+.. +  +++.++  |..+|..++|..  -|..||+++      -|+.|.||.-++..-  
T Consensus        23 gkrlATcs--SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs------YDgkVIiWke~~g~w~k   94 (299)
T KOG1332|consen   23 GKRLATCS--SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS------YDGKVIIWKEENGRWTK   94 (299)
T ss_pred             cceeeeec--CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee------cCceEEEEecCCCchhh
Confidence            88999999  699999999774 2  344444  446899999998  899999999      699999999864422  


Q ss_pred             -E--eccCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876          78 -K--RFNSPTFCQLRWRPRP--ASLLSKEQVDKIK  107 (143)
Q Consensus        78 -~--~~~~~~v~~l~wsP~~--~~l~s~s~d~~i~  107 (143)
                       +  ..|...|++++|.|.+  -.|++++.|+.|.
T Consensus        95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             hhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence             2  2346789999999985  6888999999885

>KOG1408|consensus

Probab=98.78  E-value=1.7e-08  Score=87.59  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII-   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l-   77 (143)
                      ++|||+|+|+|+|--+....+++|++...-.+..+ +| ..+++++|||.++|+++.+.    ..|--|.+|+-.-... 
T Consensus        84 vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs----QHDMIVnv~dWr~N~~~  159 (1080)
T KOG1408|consen   84 VAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS----QHDMIVNVNDWRVNSSG  159 (1080)
T ss_pred             EEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc----ccceEEEhhhhhhcccc
Confidence            58999999999985334567999999876666665 33 57999999999999998874    2577778887643322 


Q ss_pred             Eec-cCCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRF-NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~-~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ..- -...|..++|+-||.+.+|.+..
T Consensus       160 asnkiss~Vsav~fsEdgSYfvT~gnr  186 (1080)
T KOG1408|consen  160 ASNKISSVVSAVAFSEDGSYFVTSGNR  186 (1080)
T ss_pred             cccccceeEEEEEEccCCceeeeeeee
Confidence            111 24579999999999999998654

>KOG0270|consensus

Probab=98.78  E-value=7.9e-09  Score=84.98  Aligned_cols=98  Identities=19%  Similarity=0.332  Sum_probs=73.2

Q ss_pred             CCCEEEEEecCCCCeEEEEECC---CceE--------------E--e----eeccCceEEEEECCCCCE-EEEeecCcce
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTG---DFSV--------------M--N----AAEHHQATDVEWDPTGRY-VMSGVSLWKT   61 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~---~~~~--------------~--~----~~~~~~v~~i~wsPdG~~-lat~s~~~~~   61 (143)
                      .|+|+|.|++  |..|+|||++   ...+              .  .    +.|...|..++|.-.-+. ||+||     
T Consensus       191 ~gNyvAiGtm--dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-----  263 (463)
T KOG0270|consen  191 AGNYVAIGTM--DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-----  263 (463)
T ss_pred             CcceEEEecc--CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----
Confidence            4789999995  7899999976   1000              0  0    012234678899988885 45666     


Q ss_pred             ecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCC-CeeeecCchhhHH-hhhh
Q psy5876          62 KADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRP-ASLLSKEQVDKIK-KSLK  111 (143)
Q Consensus        62 ~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~-~~l~s~s~d~~i~-~~~~  111 (143)
                       .|++|++||+ .|++-...  +...|.++.|+|.. +.|++|+.|++++ +++|
T Consensus       264 -aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  264 -ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             -CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence             7999999999 58876654  47799999999985 6889999999887 5555

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=5.1e-08  Score=80.95  Aligned_cols=99  Identities=9%  Similarity=0.038  Sum_probs=64.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEEC--CCceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDT--GDFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~--~~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .|||||++|+..+. .+|...||.+  ++++.. .+++.......+|||||++|+..+...   .+..+.+||+.+....
T Consensus       290 ~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        290 FFSPDGRSIYFTSD-RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG---GAFKLYVQDLATGQVT  365 (427)
T ss_pred             EEcCCCCEEEEEec-CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC---CcEEEEEEECCCCCeE
Confidence            69999999987653 3466677764  444321 123333455689999999999877310   1225889999644333


Q ss_pred             ec-cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          79 RF-NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        79 ~~-~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .. ........+|+|||+.|+..++++
T Consensus       366 ~lt~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        366 ALTDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EccCCCCccCceECCCCCEEEEEEecC
Confidence            32 223346789999999999877654

>KOG0300|consensus

Probab=98.77  E-value=2.2e-08  Score=80.24  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=84.4

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc----E
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK----I   76 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~----~   76 (143)
                      |=.-|+.++++++  |.+..+||+++++++..+  |....+.++=+|.-|+++|+|      .|.++++||+...    -
T Consensus       280 WL~gg~Q~vTaSW--DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS------rDtTFRLWDFReaI~sV~  351 (481)
T KOG0300|consen  280 WLAGGQQMVTASW--DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS------RDTTFRLWDFREAIQSVA  351 (481)
T ss_pred             hhcCcceeeeeec--cccceeeeeccCceeccccCcchhccccccCCcceEEEEec------cCceeEeccchhhcceee
Confidence            4456889999996  899999999999988765  345799999999999999999      6999999999622    2


Q ss_pred             EEeccCCcEEEEEEeeCCCeeeecCchhhHH----hhhhhhchh
Q psy5876          77 IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK----KSLKKYTPA  116 (143)
Q Consensus        77 l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~----~~~~~~~~~  116 (143)
                      +++-|.+.|.+..|.-+. .++|+++|.+||    +|.+.-.+.
T Consensus       352 VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplAT  394 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLAT  394 (481)
T ss_pred             eecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCccee
Confidence            344567899999999655 599999999998    555544433

>KOG2048|consensus

Probab=98.77  E-value=6.4e-08  Score=82.98  Aligned_cols=98  Identities=14%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|++.| +|.+.+  .+|.|..||+.+++++...+  ...+.+++-+|.+..++.|+      .|+-++.++.. +++.
T Consensus        75 L~W~e~~-RLFS~g--~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc------ddGvl~~~s~~p~~I~  145 (691)
T KOG2048|consen   75 LAWAEGG-RLFSSG--LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC------DDGVLYDFSIGPDKIT  145 (691)
T ss_pred             EEEccCC-eEEeec--CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec------CCceEEEEecCCceEE
Confidence            5899655 555666  48999999999999888765  35799999999999999998      46655555553 4454


Q ss_pred             Eec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.    +..+|.+++|+|++..|++|+.|+-||
T Consensus       146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             EEeecccccceEEEEEecCCccEEEecccCceEE
Confidence            442    257999999999999999999999776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=9.6e-08  Score=79.35  Aligned_cols=95  Identities=15%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~   75 (143)
                      .+|||||+.|+.... .+|  .|.+||+.+++......+ ......+|||||++|+..+.     .++  .++++++.+.
T Consensus       253 ~~~SpDG~~l~~~~s-~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd-----~~g~~~iy~~dl~~g  326 (433)
T PRK04922        253 PSFSPDGRRLALTLS-RDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSD-----RGGRPQIYRVAASGG  326 (433)
T ss_pred             ceECCCCCEEEEEEe-CCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC-----CCCCceEEEEECCCC
Confidence            379999998875432 234  699999988765432222 23567899999999998874     233  3566666543


Q ss_pred             EEEe--ccCCcEEEEEEeeCCCeeeecC
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ....  .........+|+|+|+.|+-.+
T Consensus       327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        327 SAERLTFQGNYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEE
Confidence            3332  2233344689999999988644

>KOG0274|consensus

Probab=98.77  E-value=7.3e-08  Score=82.54  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--cC
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--NS   82 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--~~   82 (143)
                      -+.+|++|+  .|.++++||..+++++..+..+.-+..+.+-++-++++||      .|++|++|+++ |.+++..  +.
T Consensus       260 ~~~~lvsgS--~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs------~D~tVkVW~v~n~~~l~l~~~h~  331 (537)
T KOG0274|consen  260 GGDKLVSGS--TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGS------RDNTVKVWDVTNGACLNLLRGHT  331 (537)
T ss_pred             CCCEEEEEe--cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeecc------CCceEEEEeccCcceEEEecccc
Confidence            377899998  6999999999999999988644433344455666788888      79999999996 7777754  57


Q ss_pred             CcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          83 PTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        83 ~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..|+++...  +..+++++.|++|+
T Consensus       332 ~~V~~v~~~--~~~lvsgs~d~~v~  354 (537)
T KOG0274|consen  332 GPVNCVQLD--EPLLVSGSYDGTVK  354 (537)
T ss_pred             ccEEEEEec--CCEEEEEecCceEE
Confidence            899999887  88999999999876

>KOG0268|consensus

Probab=98.76  E-value=6.5e-09  Score=84.01  Aligned_cols=100  Identities=12%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcE-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKI-   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~-   76 (143)
                      +.|+|--+.|+.++. .|+.|.+||+.+..++.+.- ....+.|+|+|.+--|++|+      .|..++.+|..  .+. 
T Consensus       193 vkfNpvETsILas~~-sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~------ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  193 VKFNPVETSILASCA-SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN------EDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             EecCCCcchheeeec-cCCceEEEecccCCccceeeeeccccceecCccccceeecc------ccccceehhhhhhcccc
Confidence            467888775544433 59999999999877766542 24578899999776677777      68899999884  332 


Q ss_pred             -EEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 -IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 -l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       +++.+...|.++.|+|.|+-++|||-|++||
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEE
Confidence             3455688899999999999999999999998

>KOG2110|consensus

Probab=98.76  E-value=5e-08  Score=78.89  Aligned_cols=65  Identities=8%  Similarity=0.220  Sum_probs=54.6

Q ss_pred             CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|||+|.+||+|+  ..|+ ||++.+.+|+.+..|.-    -.|.+++||||+++|++.|      ...+|.||.++
T Consensus       179 lafs~~G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS------~TeTVHiFKL~  248 (391)
T KOG2110|consen  179 LAFSPDGTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS------NTETVHIFKLE  248 (391)
T ss_pred             EEECCCCCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec------CCCeEEEEEec
Confidence            58999999999999  5675 89999999999988742    2588999999999999888      46678777653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.75  E-value=1.5e-07  Score=72.21  Aligned_cols=99  Identities=16%  Similarity=0.326  Sum_probs=75.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++|+|+|+++++++. .++.+++|++.+++.+....  ...+.+++|+|+|+ ++++++      .|+.+.+|+.. +..
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~d~~i~~wd~~~~~~  233 (466)
T COG2319         161 LAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS------SDGTIRLWDLSTGKL  233 (466)
T ss_pred             EEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec------CCCcEEEEECCCCcE
Confidence            479999998888862 28999999999766665543  45799999999999 555545      69999999885 666


Q ss_pred             EE-ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IK-RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~-~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +. ..  +.... -..|+|++..+++++.|..++
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  266 (466)
T COG2319         234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR  266 (466)
T ss_pred             EeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence            65 23  23333 228999998899999998876

>KOG0303|consensus

Probab=98.75  E-value=4.7e-08  Score=79.85  Aligned_cols=92  Identities=7%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      |+|.|.-. .|+++|  .|.+|.+||+.+++.+.+..| ..|++++|+-||.+|+|.+      .|+.|+|||. .|+.+
T Consensus       137 V~wHPtA~NVLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~~v  208 (472)
T KOG0303|consen  137 VQWHPTAPNVLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGTVV  208 (472)
T ss_pred             EeecccchhhHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCcEe
Confidence            46777654 667777  599999999999997777655 4699999999999999999      7999999999 58887


Q ss_pred             Eec--c-CCcEEEEEEeeCCCeeeecC
Q psy5876          78 KRF--N-SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        78 ~~~--~-~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ...  | ...-..+.|--+|. ++|.+
T Consensus       209 ~e~~~heG~k~~Raifl~~g~-i~tTG  234 (472)
T KOG0303|consen  209 SEGVAHEGAKPARAIFLASGK-IFTTG  234 (472)
T ss_pred             eecccccCCCcceeEEeccCc-eeeec
Confidence            764  3 22334456777888 55543

>KOG0274|consensus

Probab=98.75  E-value=9.2e-08  Score=81.94  Aligned_cols=92  Identities=21%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec-
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF-   80 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~-   80 (143)
                      -.+.++++|+  .|.+|++|+++++.++..+. | ..|.++..+  +.++++|+      .|+.|++|++ .+++++.. 
T Consensus       299 ~~~~~~~sgs--~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs------~d~~v~VW~~~~~~cl~sl~  368 (537)
T KOG0274|consen  299 IDPFLLVSGS--RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS------YDGTVKVWDPRTGKCLKSLS  368 (537)
T ss_pred             ccCceEeecc--CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe------cCceEEEEEhhhceeeeeec
Confidence            3455677777  59999999999999888764 4 579999998  88999999      5899999999 69999876 


Q ss_pred             -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 -NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       |...|+++.+.+. +.+++|+.|.+||
T Consensus       369 gH~~~V~sl~~~~~-~~~~Sgs~D~~Ik  395 (537)
T KOG0274|consen  369 GHTGRVYSLIVDSE-NRLLSGSLDTTIK  395 (537)
T ss_pred             CCcceEEEEEecCc-ceEEeeeeccceE
Confidence             4778999976655 8999999998886

>KOG1034|consensus

Probab=98.74  E-value=4.5e-08  Score=78.40  Aligned_cols=66  Identities=12%  Similarity=0.156  Sum_probs=55.4

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |.|.|+. ++|++++  .|..|++|++.+..++..+.     ...|.++.||+||++|++++      .|..+++|++.-
T Consensus       141 ik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~~  212 (385)
T KOG1034|consen  141 IKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLNV  212 (385)
T ss_pred             hhcCCCCCcEEEEec--CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecCh
Confidence            3466776 4777777  69999999999999887653     25799999999999999999      799999999863

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.74  E-value=1.6e-07  Score=76.98  Aligned_cols=94  Identities=13%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~   79 (143)
                      .|||||+++.+++  .||.|.++|+.+.+.+.+.. .....++++||||+|++++..     .++.+.|+|.+ .+.+..
T Consensus        43 ~~s~Dgr~~yv~~--rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   43 KFSPDGRYLYVAN--RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             E-TT-SSEEEEEE--TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEE
T ss_pred             EecCCCCEEEEEc--CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-----CCCceeEeccccccceee
Confidence            5899999999998  58999999999999888765 346889999999999998875     58899999984 666665


Q ss_pred             cc---------CCcEEEEEEeeCCC-eeeecCc
Q psy5876          80 FN---------SPTFCQLRWRPRPA-SLLSKEQ  102 (143)
Q Consensus        80 ~~---------~~~v~~l~wsP~~~-~l~s~s~  102 (143)
                      ..         ..++..+--+|..+ .+++-.+
T Consensus       116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd  148 (369)
T PF02239_consen  116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD  148 (369)
T ss_dssp             EE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred             cccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence            32         23677887788887 4444433

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=1.1e-07  Score=79.35  Aligned_cols=94  Identities=11%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEE--CCC--ceE-EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVD--TGD--FSV-MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd--~~~--~~~-~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      +|||||++|+..+. .+|..++|.  ++.  ++. ..+.....+...+|||||++|+..+...   ....+.+||+.+..
T Consensus       287 ~wSPDG~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~g~  362 (428)
T PRK01029        287 SFSPDGTRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLATGR  362 (428)
T ss_pred             EECCCCCEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCCCC
Confidence            79999999987763 356555664  431  211 1222234567899999999999877421   12468899997554


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeee
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s   99 (143)
                      .....  ...+....|+|||+.|+-
T Consensus       363 ~~~Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        363 DYQLTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             eEEccCCCCCccceEECCCCCEEEE
Confidence            44332  235678999999998874

>KOG1332|consensus

Probab=98.72  E-value=4.1e-08  Score=76.09  Aligned_cols=98  Identities=14%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             eEec--CCCEEEEEecCCCCeEEEEECCCceE--Eeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRM--RGTHIVLAELRDTGSLEFVDTGDFSV--MNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SP--dG~~las~~~~~dg~i~iWd~~~~~~--~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      +|..  -|.+||++++  ||.|-||.-.+++=  ...+  |...|++|+|.|.  |-.||+++      .|+.|.|.+++
T Consensus        63 ~wahPk~G~iLAScsY--DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas------SDG~vsvl~~~  134 (299)
T KOG1332|consen   63 AWAHPKFGTILASCSY--DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS------SDGKVSVLTYD  134 (299)
T ss_pred             eecccccCcEeeEeec--CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee------CCCcEEEEEEc
Confidence            4544  6999999996  89999999877632  2222  2357999999997  45788888      59999999885


Q ss_pred             Cc------EEEeccCCcEEEEEEeeC---C-----------CeeeecCchhhHH
Q psy5876          74 GK------IIKRFNSPTFCQLRWRPR---P-----------ASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~------~l~~~~~~~v~~l~wsP~---~-----------~~l~s~s~d~~i~  107 (143)
                      +.      .+...|.-.|++++|.|-   |           ++|+|++.|..||
T Consensus       135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk  188 (299)
T KOG1332|consen  135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK  188 (299)
T ss_pred             CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence            32      334456778999999998   4           5699999998886

>KOG0647|consensus

Probab=98.72  E-value=6.4e-08  Score=76.74  Aligned_cols=104  Identities=11%  Similarity=0.136  Sum_probs=78.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCC--EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++||-||..+++|+  .|+.+++||+.+++...-. |..+|..+.|-+...  .|+|||      -|++++.||.. ...
T Consensus        78 v~WsddgskVf~g~--~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~~~p  149 (347)
T KOG0647|consen   78 VCWSDDGSKVFSGG--CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRSSNP  149 (347)
T ss_pred             EEEccCCceEEeec--cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCCCCe
Confidence            48999999999999  6999999999998665543 446899999998877  799999      69999999995 567


Q ss_pred             EEecc-CCcEEEEEEeeCCCeeeecCchhhHHhhhhhh
Q psy5876          77 IKRFN-SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKY  113 (143)
Q Consensus        77 l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~  113 (143)
                      +.... ..+++++..- .+-..+..++...+..||++-
T Consensus       150 v~t~~LPeRvYa~Dv~-~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  150 VATLQLPERVYAADVL-YPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             eeeeeccceeeehhcc-CceeEEEecCCcEEEEEcCCC
Confidence            77654 7788877553 222333444455555666553

>KOG1036|consensus

Probab=98.72  E-value=9.7e-08  Score=75.66  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~   78 (143)
                      |.|+|.++.|+++++  ||++++||+........+.+ .++.+++|.++ ..+++|+      .|+.|+.+|+.+. ...
T Consensus        19 v~f~~~~~~LLvssW--DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~------~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSW--DGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGG------LDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             EEEcCcCCcEEEEec--cCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEec------cCceEEEEEecCCccee
Confidence            479999999999997  89999999997765555543 68999999985 4678888      6999999999643 332


Q ss_pred             -eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 -RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 -~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       --|...+.++...|--..++|||=|++|+
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik  119 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIK  119 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEE
Confidence             23577899999999999999999999987

>KOG0301|consensus

Probab=98.71  E-value=4.8e-08  Score=84.05  Aligned_cols=94  Identities=7%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc--
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN--   81 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~--   81 (143)
                      =|++ .+++|+  .|.+|++|.-++.......|...|..++.=|++. |++|+      .|+.|+.|+.+|.+|.+.+  
T Consensus       149 l~e~-~~vTgs--aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScs------NDg~Ir~w~~~ge~l~~~~gh  218 (745)
T KOG0301|consen  149 LPEN-TYVTGS--ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCS------NDGSIRLWDLDGEVLLEMHGH  218 (745)
T ss_pred             cCCC-cEEecc--CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeec------CCceEEEEeccCceeeeeecc
Confidence            3666 667887  6999999997653333334445799999998875 56777      6999999999999887764  


Q ss_pred             CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          82 SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        82 ~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.|++++-.+++..++|+++|+++|
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEE
Confidence            67899999888889999999999987

>KOG2111|consensus

Probab=98.71  E-value=9.9e-08  Score=76.01  Aligned_cols=93  Identities=13%  Similarity=0.219  Sum_probs=73.3

Q ss_pred             EEEEEecCCCCeEEEEECCCceE---Ee-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSV---MN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN--   81 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~---~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~--   81 (143)
                      +||--|+ .-|.|+|-|+...+.   .. .-|...|.+++.+-+|..+||+|.     ...-|+|||. +|.++.+++  
T Consensus       150 ~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  150 LLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             EEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecC
Confidence            4444455 479999999764332   22 223468999999999999999995     4556899999 698888765  


Q ss_pred             --CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          82 --SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        82 --~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        ...|++++|||+..+|+..|+-++++
T Consensus       224 ~d~A~iy~iaFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  224 VDRADIYCIAFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             CchheEEEEEeCCCccEEEEEcCCCeEE
Confidence              45899999999999999999999876

>KOG0281|consensus

Probab=98.71  E-value=1.3e-08  Score=82.23  Aligned_cols=91  Identities=13%  Similarity=0.289  Sum_probs=71.7

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-   80 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-   80 (143)
                      -|...+++|.  .|++|.|||.++..++..+  |.+.|.++.|  |.|.|++||      .|.+|+|||++ |+.+... 
T Consensus       205 YDD~kiVSGl--rDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGS------SDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  205 YDDEKIVSGL--RDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGS------SDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ecchhhhccc--ccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecC------CCceEEEEeccCCchhhHHh
Confidence            3556778887  6999999999998877654  3456776666  567999999      59999999995 8887764 


Q ss_pred             -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 -NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       |...|.++.|+.  .+++|+|.|.+|+
T Consensus       275 hHceaVLhlrf~n--g~mvtcSkDrsia  300 (499)
T KOG0281|consen  275 HHCEAVLHLRFSN--GYMVTCSKDRSIA  300 (499)
T ss_pred             hhcceeEEEEEeC--CEEEEecCCceeE
Confidence             477899998874  4899999998775

>KOG2111|consensus

Probab=98.70  E-value=1.1e-07  Score=75.82  Aligned_cols=65  Identities=15%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++.+-+|..||+++  ..|+ |||||+.+++++..+.    +..+++++||||+.+||.+|      ..+++.||.+.
T Consensus       187 v~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS------dKgTlHiF~l~  256 (346)
T KOG2111|consen  187 VALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS------DKGTLHIFSLR  256 (346)
T ss_pred             EEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc------CCCeEEEEEee
Confidence            35678999999999  4676 8999999999988763    45799999999999999999      47788888774

>KOG2445|consensus

Probab=98.68  E-value=2.8e-07  Score=73.41  Aligned_cols=111  Identities=14%  Similarity=0.287  Sum_probs=83.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC----CceEEeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG----DFSVMNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~----~~~~~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      +.|.+-|+++|+|+  .|++|.|||.+    +..+....  +...|..|.|.|-  |+-+|++|      .|+++.||.-
T Consensus        19 Vs~D~~GRRmAtCS--sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS------~Drtv~iWEE   90 (361)
T KOG2445|consen   19 VSFDFYGRRMATCS--SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS------YDRTVSIWEE   90 (361)
T ss_pred             eeecccCceeeecc--CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe------cCCceeeeee
Confidence            47899999999999  69999999944    34454433  3467999999874  99999999      7999999975


Q ss_pred             c-------CcE-E--Eec--cCCcEEEEEEeeC--CCeeeecCchhhHH-------hhhhhhchhccH
Q psy5876          73 Q-------GKI-I--KRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK-------KSLKKYTPAFEA  119 (143)
Q Consensus        73 ~-------g~~-l--~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~-------~~~~~~~~~~e~  119 (143)
                      +       |+. +  .+.  ....|+++.|.|.  |-.|++++.|+.+|       -|+++++-+-|.
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            2       221 1  112  2457999999997  66899999999998       566666655554

>KOG2919|consensus

Probab=98.68  E-value=1.9e-07  Score=74.84  Aligned_cols=92  Identities=16%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC-------ce-------E-EeeeccCceEEEEEC-------CCCCEEEEeecCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD-------FS-------V-MNAAEHHQATDVEWD-------PTGRYVMSGVSLW   59 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~-------~~-------~-~~~~~~~~v~~i~ws-------PdG~~lat~s~~~   59 (143)
                      .|||||..|++-+  .|..+++|++..       ..       . +...+...|.+.+|=       |+..++|+.+   
T Consensus        56 kWSPDGSciL~~s--edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss---  130 (406)
T KOG2919|consen   56 KWSPDGSCILSLS--EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS---  130 (406)
T ss_pred             eeCCCCceEEeec--ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc---
Confidence            6999999999988  589999999761       10       1 111234568888887       8888999888   


Q ss_pred             ceecCCcEEEEee-cCcEEEecc----C---CcEEEEEEeeCCCeeeecC
Q psy5876          60 KTKADTGYWQWSF-QGKIIKRFN----S---PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        60 ~~~~D~~i~iW~~-~g~~l~~~~----~---~~v~~l~wsP~~~~l~s~s  101 (143)
                         .|+.|.+||. +|++-...+    .   ....+++|+|||..|+.|-
T Consensus       131 ---r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy  177 (406)
T KOG2919|consen  131 ---RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY  177 (406)
T ss_pred             ---ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence               5999999999 687665543    2   2457899999999999874

>KOG0974|consensus

Probab=98.67  E-value=1.3e-07  Score=84.19  Aligned_cols=97  Identities=11%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      +.||-||+++++.+  +|.++|+|++++.+...  -+.| ..+..++++|.  +|+|++      .|-+.++|+.+|..+
T Consensus       181 i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l  250 (967)
T KOG0974|consen  181 IVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG------EDCTCRVWGVNGTQL  250 (967)
T ss_pred             EEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec------cceEEEEEeccccee
Confidence            35789999999999  79999999999877654  2333 57999999999  999999      799999999999987


Q ss_pred             Eec--c-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--N-SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~-~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  | ...++.++..++...++|++.|+.+|
T Consensus       251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            654  3 56899999999999999999999988

>KOG1408|consensus

Probab=98.67  E-value=1.3e-07  Score=82.13  Aligned_cols=97  Identities=15%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      .--|+.+++++++  +|..|+|+|+.++++...|.    + ...-.+..+|.|-||||..      .|+++.++|+ .|+
T Consensus       603 ~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc------sdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC------SDKTLCFVDFVSGE  674 (1080)
T ss_pred             eeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee------cCCceEEEEeccch
Confidence            3468899999999  79999999999999888763    2 3577889999999999998      5999999999 699


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ++.+.  |..-|..+.|.||=+.|+|.+.|+=|
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI  707 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI  707 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCceE
Confidence            98764  46789999999999999999988743

>KOG0299|consensus

Probab=98.66  E-value=4.3e-08  Score=81.00  Aligned_cols=99  Identities=8%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-E
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI-I   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~-l   77 (143)
                      ++.||||+|||+|+  .|..|.||+.++++.++.+.  -..|.+++|--.-..+.+++      .|.++++|+++-.- +
T Consensus       208 ~avS~Dgkylatgg--~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s------~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  208 LAVSSDGKYLATGG--RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS------ADRSVKVWSIDQLSYV  279 (479)
T ss_pred             EEEcCCCcEEEecC--CCceEEEecCcccchhhcccccccceeeeeeecCccceeeee------cCCceEEEehhHhHHH
Confidence            46799999999999  58999999999998877653  35799999998777888888      59999999996443 3


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .++  |.+.|.++.-...+..+-.|+.|.++|
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~r  311 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVR  311 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeE
Confidence            232  466777776665555333344777765

>KOG2139|consensus

Probab=98.64  E-value=2e-07  Score=75.66  Aligned_cols=99  Identities=14%  Similarity=0.300  Sum_probs=74.5

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCC----ce-----------EEeeeccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGD----FS-----------VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD   64 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~----~~-----------~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D   64 (143)
                      ++|-|.+. .|++|.   .+-|.||..+.    ..           .+....|.+|+++.|.+||..++++|-     .|
T Consensus       146 lawRPlsaselavgC---r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~-----gs  217 (445)
T KOG2139|consen  146 LAWRPLSASELAVGC---RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF-----GS  217 (445)
T ss_pred             EEeccCCcceeeeee---cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc-----Cc
Confidence            47878765 666666   46789999662    11           111112468999999999999999996     68


Q ss_pred             CcEEEEeec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          65 TGYWQWSFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        65 ~~i~iW~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..|.|||++ |..+.-  .....+.-+.|||||..|+.+.-|...+
T Consensus       218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfr  263 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFR  263 (445)
T ss_pred             ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceee
Confidence            899999994 665443  3467899999999999999998887665

>KOG0646|consensus

Probab=98.61  E-value=3.9e-07  Score=75.48  Aligned_cols=99  Identities=14%  Similarity=0.226  Sum_probs=80.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC---------ceEEeeecc--CceEEEEECCC--CCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD---------FSVMNAAEH--HQATDVEWDPT--GRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~---------~~~~~~~~~--~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i   67 (143)
                      +.||-||.+|++||  .||.|.+|++.+         .+.+..+++  -+|+++.-.+.  .-+|+|+|      .|.++
T Consensus       129 L~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------~D~t~  200 (476)
T KOG0646|consen  129 LKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------EDRTI  200 (476)
T ss_pred             EEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec------CCceE
Confidence            46999999999999  699999999542         344555532  47888766655  45899999      79999


Q ss_pred             EEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          68 WQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        68 ~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++||+. |.+|.+.. ...+.+++..|-...+..|++++.|-
T Consensus       201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEE
Confidence            999995 88887765 66899999999999999999999875

>KOG2314|consensus

Probab=98.61  E-value=1.1e-07  Score=80.50  Aligned_cols=101  Identities=13%  Similarity=0.259  Sum_probs=79.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce----e-cCCcEEEEee-cC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT----K-ADTGYWQWSF-QG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~----~-~D~~i~iW~~-~g   74 (143)
                      +.|||.|+||++--  ..| |.+|.-.+...+..+.|..|.-+.|||+.+||+|-|..+..    . ....+.|||+ +|
T Consensus       216 v~wSP~GTYL~t~H--k~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFH--KQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             EEecCCceEEEEEe--ccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            47999999999965  455 77999999988999989999999999999999999975532    1 1257899999 68


Q ss_pred             cEEEeccC--C---cEEEEEEeeCCCeeeecCchh
Q psy5876          75 KIIKRFNS--P---TFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        75 ~~l~~~~~--~---~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .+.+.++.  .   .-.=+.||-|+++++-...+.
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s  327 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS  327 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEeccce
Confidence            87776542  2   233579999999999766543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=4.6e-07  Score=75.85  Aligned_cols=97  Identities=12%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             eEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      +|||||+.|+.... .+|  .|.++|+++++...... .......+|||||++|+..+...   ....++++++.+....
T Consensus       268 ~wSPDG~~La~~~~-~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~---g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        268 RFSPDGKKLALVLS-KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG---GKPQIYRVNLASGKVS  343 (448)
T ss_pred             eECCCCCEEEEEEe-CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC---CCceEEEEECCCCCEE
Confidence            79999999987542 355  47777887765433222 23467889999999998877410   1235666677543333


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..  ........+|+|||+.|+-.+.
T Consensus       344 ~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        344 RLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             EEecCCCCCcCeeECCCCCEEEEEEe
Confidence            22  2223345799999998876544

>KOG1273|consensus

Probab=98.60  E-value=5.9e-08  Score=77.57  Aligned_cols=68  Identities=21%  Similarity=0.264  Sum_probs=56.8

Q ss_pred             eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          34 AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR---FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        34 ~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +.++....++.|||.|.|||.|.      .|+.+.|||+.-..+.+   .|..+|.+++|||+|..|+|+|.|-.|+
T Consensus        20 tld~~~a~~~~Fs~~G~~lAvGc------~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~   90 (405)
T KOG1273|consen   20 TLDNPLAECCQFSRWGDYLAVGC------ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK   90 (405)
T ss_pred             eccCCccceEEeccCcceeeeec------cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence            34444578999999999999999      69999999996554443   4678999999999999999999987765

>KOG1523|consensus

Probab=98.59  E-value=1.9e-07  Score=74.58  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=80.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC-CCce--E--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT-GDFS--V--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~-~~~~--~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |.|+|.++.|++++  .|..-++|.. +.++  .  +..-.....+++.|+|.+..||+||      .-..|.||-++++
T Consensus        61 vdWap~snrIvtcs--~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS------gar~isVcy~E~E  132 (361)
T KOG1523|consen   61 VDWAPKSNRIVTCS--HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS------GARLISVCYYEQE  132 (361)
T ss_pred             EeecCCCCceeEcc--CCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEecc------CccEEEEEEEecc
Confidence            57999999999999  5888899997 3322  2  1111235689999999999999999      4677888888654


Q ss_pred             -------EEEeccCCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhccH
Q psy5876          76 -------IIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEA  119 (143)
Q Consensus        76 -------~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e~  119 (143)
                             .+.+-....|.++.|+|++-.|+.||-|.+.| -|..|.+.-|+
T Consensus       133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r-VfSayIK~Vde  182 (361)
T KOG1523|consen  133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR-VFSAYIKGVDE  182 (361)
T ss_pred             cceehhhhhCCccccceeeeeccCCcceecccccCccee-EEEEeeecccc
Confidence                   12222356899999999999999999888765 23334444333

>KOG0301|consensus

Probab=98.59  E-value=7.5e-07  Score=76.86  Aligned_cols=107  Identities=13%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF   80 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~   80 (143)
                      +=|++ .+++|+  .||.|++|++ +++++.+++ | ..+++++..++++.|+|++      .|++++||+.. .+.+..
T Consensus       187 vl~~~-~flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g------EDrtlriW~~~-e~~q~I  255 (745)
T KOG0301|consen  187 VLDDS-HFLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG------EDRTLRIWKKD-ECVQVI  255 (745)
T ss_pred             EecCC-CeEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec------CCceEEEeecC-ceEEEE
Confidence            33554 455666  4999999999 567766654 3 4699999999999999999      79999999986 554433


Q ss_pred             --cCCcEEEEEEeeCCCeeeecCchhhHH--------hhhhhhchhccHHh
Q psy5876          81 --NSPTFCQLRWRPRPASLLSKEQVDKIK--------KSLKKYTPAFEAKD  121 (143)
Q Consensus        81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~--------~~~~~~~~~~e~~~  121 (143)
                        +...+|++..=++|. |++|+-|+-||        +.-.+-++.||.+.
T Consensus       256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~evl~afd~~v  305 (745)
T KOG0301|consen  256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEV  305 (745)
T ss_pred             ecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHHHHHHHHHHH
Confidence              355899999999998 67777777666        22224445565555

>KOG1524|consensus

Probab=98.59  E-value=1.2e-07  Score=80.06  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCc-cee---cCCcEE-EEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLW-KTK---ADTGYW-QWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~-~~~---~D~~i~-iW~~~g   74 (143)
                      +.|||..+.|++||  .|-..++||....-+...- |..+|++++|.|| +.++.+|.+. |+.   ...-+. -|+.+|
T Consensus       192 ~~W~~~s~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DG  268 (737)
T KOG1524|consen  192 LSWSTQSNIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGSIFNLSWSADG  268 (737)
T ss_pred             eecCccccceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeecCCCccceEEEEEcCCC
Confidence            47999999999999  6899999997643333332 3468999999999 7777787532 221   122223 389999


Q ss_pred             cEEEec
Q psy5876          75 KIIKRF   80 (143)
Q Consensus        75 ~~l~~~   80 (143)
                      .++.--
T Consensus       269 TQ~a~g  274 (737)
T KOG1524|consen  269 TQATCG  274 (737)
T ss_pred             ceeecc
Confidence            887643

>KOG0650|consensus

Probab=98.59  E-value=5.6e-07  Score=76.81  Aligned_cols=103  Identities=15%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCE--EEEeecCc------------------
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRY--VMSGVSLW------------------   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~--lat~s~~~------------------   59 (143)
                      |+-.|.|.+||+|+  .||+|+||.+.||.++.+... ..|.+|+|+|.+..  ||.+...-                  
T Consensus       406 iSvdp~G~wlasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~  483 (733)
T KOG0650|consen  406 ISVDPSGEWLASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK  483 (733)
T ss_pred             EEecCCcceeeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence            35579999999999  799999999999999988753 56999999999884  44443210                  


Q ss_pred             -----c---eecCCcEEEEeec-------CcEEEeccCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          60 -----K---TKADTGYWQWSFQ-------GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        60 -----~---~~~D~~i~iW~~~-------g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                           .   ...+..+..|.-.       |-++...+...|.++.|+-+|.+|++...++.
T Consensus       484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence                 0   1234567788653       21344456789999999999999999876543

>KOG1310|consensus

Probab=98.58  E-value=1.3e-07  Score=80.21  Aligned_cols=104  Identities=13%  Similarity=0.250  Sum_probs=82.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe---eeccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeecC-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN---AAEHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQG-   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~---~~~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~g-   74 (143)
                      +.|+.||.+|++|+  +|-.+.|||.-..|++.   +.|...|.++.|-|  ..+.++||.      .|+.|+++|++. 
T Consensus        56 LeWn~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~lfdl~~~  127 (758)
T KOG1310|consen   56 LEWNADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIKLFDLDSS  127 (758)
T ss_pred             eeecCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEEEEecccc
Confidence            57999999999999  78899999988766654   44456899999998  567888888      699999999962 


Q ss_pred             --c--------EEE--eccCCcEEEEEEeeCC-CeeeecCchhhHH-hhhhh
Q psy5876          75 --K--------IIK--RFNSPTFCQLRWRPRP-ASLLSKEQVDKIK-KSLKK  112 (143)
Q Consensus        75 --~--------~l~--~~~~~~v~~l~wsP~~-~~l~s~s~d~~i~-~~~~~  112 (143)
                        .        .++  ..+.+.|..++--|++ ..+.++++|++|| .++||
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence              1        112  2357789999999998 5777999999997 45554

>KOG2315|consensus

Probab=98.58  E-value=5.6e-07  Score=76.00  Aligned_cols=99  Identities=10%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             CeEecCCCEEEEE-ecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEE
Q psy5876           1 MKLRMRGTHIVLA-ELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~-~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~   78 (143)
                      +.|||+|+.++++ |+ ...++.|+|.+ +..+..+...+=+.+-|+|.|++|+-++-.-   .-+.+-|||+.. ++|.
T Consensus       276 v~W~~s~~EF~VvyGf-MPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n~K~i~  350 (566)
T KOG2315|consen  276 VTWSPSGREFAVVYGF-MPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGN---LPGDMEVWDVPNRKLIA  350 (566)
T ss_pred             EEECCCCCEEEEEEec-ccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCC---CCCceEEEeccchhhcc
Confidence            4799999977664 55 67899999977 4677777666778899999999999888311   245789999954 4666


Q ss_pred             eccCCcEEEEEEeeCCCeeeecCchh
Q psy5876          79 RFNSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        79 ~~~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      +.....-.-+.|+|||++++|+.-..
T Consensus       351 ~~~a~~tt~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  351 KFKAANTTVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             ccccCCceEEEEcCCCcEEEEEeccc
Confidence            66655556689999999999986443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=2.9e-07  Score=50.95  Aligned_cols=36  Identities=19%  Similarity=0.570  Sum_probs=30.4

Q ss_pred             eEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876          30 SVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus        30 ~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      +++.++.  ...|++++|+|++++|+|++      .|+.+++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~------~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGS------SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEE------TTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeC------CCCEEEEEC
Confidence            4555543  36899999999999999999      699999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0270|consensus

Probab=98.57  E-value=2.8e-07  Score=76.03  Aligned_cols=92  Identities=12%  Similarity=0.204  Sum_probs=71.9

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeecC--cEEEecc-
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQG--KIIKRFN-   81 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~g--~~l~~~~-   81 (143)
                      +.||+||  .|.+|.+||++++++..++.  ...|.+++|+|. ..+|++||      .|+++.+.|+..  ..=..+. 
T Consensus       257 nVLaSgs--aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------~D~~V~l~D~R~~~~s~~~wk~  328 (463)
T KOG0270|consen  257 NVLASGS--ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------YDGTVALKDCRDPSNSGKEWKF  328 (463)
T ss_pred             eeEEecC--CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------ccceEEeeeccCccccCceEEe
Confidence            4788888  69999999999999877664  357999999995 66889999      699999999852  2222344 


Q ss_pred             CCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          82 SPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        82 ~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      ...|-.++|.|..+ ..+.+.+|+.++
T Consensus       329 ~g~VEkv~w~~~se~~f~~~tddG~v~  355 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSENSFFVSTDDGTVY  355 (463)
T ss_pred             ccceEEEEecCCCceeEEEecCCceEE
Confidence            56789999999886 455677888776

>KOG0322|consensus

Probab=98.56  E-value=2.8e-07  Score=72.14  Aligned_cols=62  Identities=13%  Similarity=0.242  Sum_probs=52.9

Q ss_pred             ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE--eccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK--RFNSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~--~~~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ++..+..-||++.+||++      -|+.++||+.+ ++.|.  +.|.+.|++++|+|+-+.++.+|+|..|
T Consensus       253 Gv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             CccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence            456677779999999999      69999999994 77654  5678999999999999999999999866

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.56  E-value=8e-07  Score=72.56  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=65.0

Q ss_pred             eEecCCCEEEEEecCCCC--eEEEEECCCceEEe-eeccCceEEEEECCCCCEEEEeecCcceecCC---cEEEEeecCc
Q psy5876           2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADT---GYWQWSFQGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~---~i~iW~~~g~   75 (143)
                      .|+|||++|+.++. ..|  .|.++|..+++... ..+...+..++|||||++|+.++.      ++   .+.+||+.+.
T Consensus       284 ~~s~dg~~l~~~s~-~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~------~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       284 SWSPDGKSIAFTSD-RGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR------EGGGFNIAVMDLDGG  356 (417)
T ss_pred             EECCCCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc------cCCceEEEEEeCCCC
Confidence            69999999987663 233  57778877665332 223356778899999999998884      32   5777887654


Q ss_pred             EEEecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876          76 IIKRFN-SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        76 ~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ...... ........|+|+|..|+..+.+.
T Consensus       357 ~~~~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       357 GERVLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence            333222 22334568999999998776544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4378|consensus

Probab=98.55  E-value=2.4e-07  Score=77.72  Aligned_cols=99  Identities=11%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      +.|||-.++|++..- .+|.|.+||+.....+...   |..++..|+|||.... |++.+      .|+.|.+||...+.
T Consensus       170 l~ys~skr~lL~~as-d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIAS-DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQA  242 (673)
T ss_pred             eecccccceeeEeec-cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec------ccceEEEeeccccc
Confidence            467888887765332 6899999999876666543   3468999999998875 55556      79999999997554


Q ss_pred             EE-ecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          77 IK-RFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        77 l~-~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .. ... ..++..++|.|+|.+|+.|.-.++|
T Consensus       243 s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  243 STDRLTYSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             ccceeeecCCcceeeecCCceEEEeecCCceE
Confidence            33 222 6789999999999999999776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.55  E-value=1.4e-06  Score=66.81  Aligned_cols=98  Identities=17%  Similarity=0.334  Sum_probs=74.8

Q ss_pred             ecCCC-EEEEEecCCCCeEEEEECCC-ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           4 RMRGT-HIVLAELRDTGSLEFVDTGD-FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         4 SPdG~-~las~~~~~dg~i~iWd~~~-~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +|++. +++..+. .|+.+.+||... .......  +...+..++|+|+++++++++.     .|+.+++|+.. +..+.
T Consensus       119 ~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         119 SPDGNSILLASSS-LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-----LDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             CCCcceEEeccCC-CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-----CCCceEEEEcCCCceEE
Confidence            78888 5554442 489999999987 5544433  3357899999999998888872     38999999996 56555


Q ss_pred             ec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      ..  +...|..++|+|++. .+++++.|..|+
T Consensus       193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             eeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            44  467899999999998 666668888887

>KOG2048|consensus

Probab=98.54  E-value=8.8e-07  Score=76.17  Aligned_cols=95  Identities=13%  Similarity=0.247  Sum_probs=76.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-EEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      ++||.+.+.||++-  .+|+|+||++...- +...+   +...|-+++|++.||+|-++.       ++.|.-||+ +++
T Consensus        31 lA~s~kS~~lAvsR--t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-------sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSR--TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-------SGSITEWDLHTLK  101 (691)
T ss_pred             EEEeccCCceeeec--cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC-------CceEEEEecccCc
Confidence            58899999999986  69999999987532 22222   234699999998888765554       889999999 688


Q ss_pred             EEEecc--CCcEEEEEEeeCCCeeeecCchh
Q psy5876          76 IIKRFN--SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        76 ~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      +++...  ...||+++-+|-+..++-+++|+
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddG  132 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDG  132 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCc
Confidence            877654  66899999999999999999998

>KOG1538|consensus

Probab=98.54  E-value=4.3e-08  Score=84.61  Aligned_cols=98  Identities=11%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF   80 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~   80 (143)
                      ++||.||+.+|+|+  .|..|-+|+-.-.-.+...|...|.++.|+|-.+.|+|++       -+-+-+|+...+-+.+.
T Consensus        59 VAys~dGkrFASG~--aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs-------LsdFglWS~~qK~V~K~  129 (1081)
T KOG1538|consen   59 VAYAKDGKRFASGS--ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS-------LSDFGLWSPEQKSVSKH  129 (1081)
T ss_pred             EEEccCCceeccCC--CceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcc-------hhhccccChhhhhHHhh
Confidence            58999999999999  6999999996532333333456799999999999999999       34678999976655544


Q ss_pred             -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 -NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       ...++.+.+|..||++++-|-.+++|-
T Consensus       130 kss~R~~~CsWtnDGqylalG~~nGTIs  157 (1081)
T KOG1538|consen  130 KSSSRIICCSWTNDGQYLALGMFNGTIS  157 (1081)
T ss_pred             hhheeEEEeeecCCCcEEEEeccCceEE
Confidence             477899999999999999998888763

>KOG1007|consensus

Probab=98.53  E-value=2e-07  Score=73.85  Aligned_cols=97  Identities=14%  Similarity=0.255  Sum_probs=75.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eeee------c-cCceEEEEECC--CCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAA------E-HHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~------~-~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      |-|-||+..|++-.   |..|.+|+++.... +...      + ....++-+|||  ||..+++.+       |+++..|
T Consensus       129 vew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-------d~tl~~~  198 (370)
T KOG1007|consen  129 VEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-------DSTLQFW  198 (370)
T ss_pred             EEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-------CCcEEEE
Confidence            35999999999864   88999999886443 2211      1 24688999999  999999998       8999999


Q ss_pred             eec-CcEEE---eccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          71 SFQ-GKIIK---RFNSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        71 ~~~-g~~l~---~~~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      |+. -++..   ..|...|.++.|+|+-+ .|+|+++|+.||
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvr  240 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVR  240 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEE
Confidence            995 33333   34566899999999986 577999999988

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=1.1e-06  Score=73.26  Aligned_cols=98  Identities=4%  Similarity=0.001  Sum_probs=60.8

Q ss_pred             eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      .|||||+.|+..... .+..|.++|+.+++...-..+. ......|||||+.|+-.+...   ....|++.++.|....+
T Consensus       239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~r  315 (419)
T PRK04043        239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQ  315 (419)
T ss_pred             EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC---CCceEEEEECCCCCeEe
Confidence            699999988765421 2456888888776533211122 234568999999998887421   12367777886544433


Q ss_pred             ccCCcEEEEEEeeCCCeeeecCc
Q psy5876          80 FNSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        80 ~~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ......+...|+|||+.|+-.+.
T Consensus       316 lt~~g~~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        316 VVFHGKNNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CccCCCcCceECCCCCEEEEEEc
Confidence            22111123599999998886543

>KOG1963|consensus

Probab=98.51  E-value=7.5e-07  Score=78.14  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-Ee-----eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MN-----AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~-----~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |.++|-|++.+..-   +..+.+|+..+... ..     ..|...+++.++||+++++|+|-      .|+.|.+|.--|
T Consensus       166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d------~dGrI~vw~d~~  236 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH---MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD------SDGRILVWRDFG  236 (792)
T ss_pred             EEEcCCceEEEEEE---eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec------cCCcEEEEeccc
Confidence            45678888887775   56788999886331 11     12234689999999999999999      689999997644


Q ss_pred             -------cEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 -------KIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 -------~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                             ..+.++|.+.|.+++|+++|.+|+||+.++.+.
T Consensus       237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv  276 (792)
T KOG1963|consen  237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV  276 (792)
T ss_pred             cccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence                   134567899999999999999999999887543

>KOG4283|consensus

Probab=98.50  E-value=6.9e-07  Score=71.07  Aligned_cols=97  Identities=10%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             EecCC-CEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCC---EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           3 LRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGR---YVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         3 ~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~---~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      |=|-. -++.+++|  |.++++||++|.+....|.. ..|++-+|||-.-   +||+|.      .|..|++-|+. |..
T Consensus       109 WyP~DtGmFtssSF--DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SGs~  180 (397)
T KOG4283|consen  109 WYPIDTGMFTSSSF--DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASGSF  180 (397)
T ss_pred             EeeecCceeecccc--cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec------CCCcEEEEeccCCcc
Confidence            44433 36667775  89999999999887666643 5799999999654   456665      58899999995 777


Q ss_pred             EEec--cCCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                      -+.+  |.+.|.++.|+|...++ +|++.|+.||
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            7765  47799999999999865 5889999877

>KOG2106|consensus

Probab=98.50  E-value=9.1e-07  Score=74.34  Aligned_cols=95  Identities=12%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN   81 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~   81 (143)
                      +-.|+...+++++  .|+.+++|+-...+-...+ ..++.++.|+|.| .+|.|+      ..+.-.+.|.+.+.+...+
T Consensus       375 a~hps~~q~~T~g--qdk~v~lW~~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt------~~G~w~V~d~e~~~lv~~~  444 (626)
T KOG2106|consen  375 ATHPSKNQLLTCG--QDKHVRLWNDHKLEWTKII-EDPAECADFHPSG-VVAVGT------ATGRWFVLDTETQDLVTIH  444 (626)
T ss_pred             EcCCChhheeecc--CcceEEEccCCceeEEEEe-cCceeEeeccCcc-eEEEee------ccceEEEEecccceeEEEE
Confidence            4578889999999  7999999993332222223 3688999999999 899998      4555668888766544433


Q ss_pred             --CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          82 --SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        82 --~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                        ..++..++|+|+|..|+-++.|..|
T Consensus       445 ~d~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  445 TDNEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             ecCCceEEEEEcCCCCEEEEecCCCeE
Confidence              6789999999999999999999876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=1.8e-06  Score=71.35  Aligned_cols=98  Identities=11%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .+|||||++|+.... .+|  .|.+||+.+++...-.. ........|||||+.|+..+...   ....++++++.+...
T Consensus       248 ~~~SpDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~  323 (430)
T PRK00178        248 PAWSPDGSKLAFVLS-KDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRA  323 (430)
T ss_pred             eEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC---CCceEEEEECCCCCE
Confidence            379999999985432 234  68888988765432222 23456789999999998877310   123577777754333


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...  .........|+|+|+.|+-.+.
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             EEeecCCCCccceEECCCCCEEEEEEc
Confidence            322  2223345789999999886554

>KOG4283|consensus

Probab=98.49  E-value=8.8e-07  Score=70.49  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=73.0

Q ss_pred             eEecCCC---EEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEE-EEeecCcceecCCcEEEEeec--
Q psy5876           2 KLRMRGT---HIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYV-MSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         2 ~~SPdG~---~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~iW~~~--   73 (143)
                      +|||=..   .||+|.  .+-.|++-|+.+|..-+++  |..+|..+.|||...|+ ||||      .|+.+++||+.  
T Consensus       150 amSp~a~sHcLiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRra  221 (397)
T KOG4283|consen  150 AMSPMAMSHCLIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRA  221 (397)
T ss_pred             hcChhhhcceEEEEec--CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecC------CCceEEEEEeecc
Confidence            3455433   455555  5789999999998876665  34689999999999985 6666      69999999994  


Q ss_pred             CcEEEe----------------ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKR----------------FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~----------------~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..++..                .+...|+.++|+.+|..+++.+-|..++
T Consensus       222 sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  222 SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            222211                0123699999999999999998887776

>KOG0642|consensus

Probab=98.47  E-value=5.9e-07  Score=75.90  Aligned_cols=98  Identities=14%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECC--------CceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTG--------DFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~--------~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      +|.|-..-|++|+  .||++.+|++.        ..+++.++.  ..+|.+++.++.|+++.+|+      .|++|+.|+
T Consensus       301 ~~~~sep~lit~s--ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg------~Dg~I~~w~  372 (577)
T KOG0642|consen  301 AFHPSEPVLITAS--EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG------IDGTIRCWN  372 (577)
T ss_pred             hcCCCCCeEEEec--cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec------cCceeeeec
Confidence            4667777899999  58999999983        245666663  36899999999999999999      699999994


Q ss_pred             e-------cCc---EE---EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          72 F-------QGK---II---KRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        72 ~-------~g~---~l---~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +       ++.   .+   ..-+.+.||.+++|+....|++++.|+++|
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEE
Confidence            4       122   11   122477899999999999999999999988

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=3.2e-06  Score=70.43  Aligned_cols=98  Identities=6%  Similarity=-0.010  Sum_probs=63.6

Q ss_pred             eEecCCCE-EEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTH-IVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~-las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .|||||+. ++..++. .+..|.++|+.+++...-. .........|||||+.|+.....   ..+..++++++.+....
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~---~g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP---KGQPDIYLYDTNTKTLT  270 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc---CCCcEEEEEECCCCcEE
Confidence            69999996 6655543 2467999998887643322 22345678899999988766531   12456777787655444


Q ss_pred             ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          79 RFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        79 ~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...  ........|+|||+.|+=.++
T Consensus       271 ~LT~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        271 QITNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             EcccCCCccCccEECCCCCEEEEEEC
Confidence            432  222345689999998875553

>KOG0322|consensus

Probab=98.47  E-value=2.3e-07  Score=72.60  Aligned_cols=64  Identities=11%  Similarity=0.221  Sum_probs=55.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      +.+-|||+.+|++|.  ||.||+|.-.++..+.  ++|...|++++||||...+|.+|      .|..|-+|++
T Consensus       257 vrIRpD~KIlATAGW--D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL  322 (323)
T KOG0322|consen  257 VRIRPDGKILATAGW--DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL  322 (323)
T ss_pred             eEEccCCcEEeeccc--CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence            356799999999997  8999999988877654  45567899999999999999999      7999999985

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=1.9e-06  Score=71.91  Aligned_cols=91  Identities=10%  Similarity=0.110  Sum_probs=61.9

Q ss_pred             eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      .|||||++|+..+.. ....|.+||+.+++...... ...+....|+|||++|+..+..   .....+++++++|.....
T Consensus       333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~---~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN---SNESELYLISLITKKTRK  409 (428)
T ss_pred             eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC---CCCceEEEEECCCCCEEE
Confidence            699999999987642 12478999998776533222 2356789999999998865531   124568888987654443


Q ss_pred             c--cCCcEEEEEEeeCCC
Q psy5876          80 F--NSPTFCQLRWRPRPA   95 (143)
Q Consensus        80 ~--~~~~v~~l~wsP~~~   95 (143)
                      .  ....+...+|+|.+.
T Consensus       410 Lt~~~g~~~~p~Ws~~~~  427 (428)
T PRK01029        410 IVIGSGEKRFPSWGAFPS  427 (428)
T ss_pred             eecCCCcccCceecCCCC
Confidence            3  234577889998764

>KOG0307|consensus

Probab=98.43  E-value=4.1e-07  Score=81.64  Aligned_cols=101  Identities=14%  Similarity=0.269  Sum_probs=75.9

Q ss_pred             CeEecCCC-EEEEEecC-CCCeEEEEECC---CceEEeeeccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEee-c
Q psy5876           1 MKLRMRGT-HIVLAELR-DTGSLEFVDTG---DFSVMNAAEHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         1 i~~SPdG~-~las~~~~-~dg~i~iWd~~---~~~~~~~~~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      |+|+||+- .|++++-+ ..-.|.+||+.   +...+.+.|..+|.+++|.|.+ ++++|++      .|+.+.+|+. +
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN~~t  285 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWNPNT  285 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEecCCC
Confidence            57999975 45555432 23489999965   2223334445689999999988 8888888      6999999999 5


Q ss_pred             CcEEEecc--CCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          74 GKIIKRFN--SPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~~--~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      |+.+..+.  .+.+.++.|.|..+ .++..+-|+.|.
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            88898876  57899999999998 445556677765

>KOG4378|consensus

Probab=98.41  E-value=3e-06  Score=71.31  Aligned_cols=91  Identities=12%  Similarity=0.290  Sum_probs=70.5

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I   76 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~   76 (143)
                      |+|||-.. .||+.|  .|..|.+||+...+...... ..+.+.++|+|+|.||+.|+      ..+.+..||+.+.  .
T Consensus       214 icfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~------s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  214 ICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN------SKGELIAYDMRSTKAP  285 (673)
T ss_pred             ceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEeec------CCceEEEEecccCCCC
Confidence            68999766 556667  58999999998766554442 36889999999999999999      4788999999765  2


Q ss_pred             E--EeccCCcEEEEEEeeCCCeeeec
Q psy5876          77 I--KRFNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        77 l--~~~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      +  ...+.+.|.+++|.|-+ .+++.
T Consensus       286 v~v~sah~~sVt~vafq~s~-tvltk  310 (673)
T KOG4378|consen  286 VAVRSAHDASVTRVAFQPSP-TVLTK  310 (673)
T ss_pred             ceEeeecccceeEEEeeecc-eeeec
Confidence            3  34457789999999987 56553

>KOG2919|consensus

Probab=98.36  E-value=2.7e-06  Score=68.40  Aligned_cols=93  Identities=12%  Similarity=0.198  Sum_probs=66.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ce---EEeeec------cCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS---VMNAAE------HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~---~~~~~~------~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|||||.+|.+|-   ...|+++|+.. |.   ...+..      ..-+++++|||-.. .+|.++-      .+.+-|
T Consensus       164 L~Fs~DGeqlfaGy---krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY------~q~~gi  234 (406)
T KOG2919|consen  164 LQFSPDGEQLFAGY---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY------GQRVGI  234 (406)
T ss_pred             EEecCCCCeEeecc---cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc------cceeee
Confidence            58999999999874   68999999852 22   111221      12468999999655 7888873      555556


Q ss_pred             EeecC-cEEEec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876          70 WSFQG-KIIKRF--NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        70 W~~~g-~~l~~~--~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +.-.+ +.++..  +.+.|.++.|.|+|+.|.+|+.
T Consensus       235 y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR  270 (406)
T KOG2919|consen  235 YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR  270 (406)
T ss_pred             EecCCCCceeeecccCCCeeeEEeccCcCeeccccc
Confidence            65543 345443  5789999999999999999975

>KOG1272|consensus

Probab=98.35  E-value=9.2e-07  Score=73.60  Aligned_cols=91  Identities=13%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEEec
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIKRF   80 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~~~   80 (143)
                      +|-.-.+-+|.  .+|+|.+|..+..+.+.+.  |..+|++|++.|+|+|+||.+      .|+.++|||+.+- .++..
T Consensus       260 NP~NaVih~Gh--snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  260 NPYNAVIHLGH--SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             CCccceEEEcC--CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecccccccee
Confidence            45555666666  5899999998887765543  346899999999999999999      7999999999643 45544


Q ss_pred             c-CCcEEEEEEeeCCCeeeecCc
Q psy5876          81 N-SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        81 ~-~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      . ..+...+++|..|-.-++.+.
T Consensus       332 ~tp~~a~~ls~SqkglLA~~~G~  354 (545)
T KOG1272|consen  332 RTPHPASNLSLSQKGLLALSYGD  354 (545)
T ss_pred             ecCCCccccccccccceeeecCC
Confidence            3 567888899988776666554

>KOG1523|consensus

Probab=98.34  E-value=3.8e-06  Score=67.20  Aligned_cols=97  Identities=12%  Similarity=0.289  Sum_probs=75.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC---ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD---FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~---~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      +|++|++.+|++-  .+..|.||....   .+...++  |...++.|.|+|-+..|+||+      .|..-++|.. .|.
T Consensus        17 Awn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs------~drnayVw~~~~~~   88 (361)
T KOG1523|consen   17 AWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS------HDRNAYVWTQPSGG   88 (361)
T ss_pred             eecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc------CCCCccccccCCCC
Confidence            7999999999987  467899999664   3455554  235799999999999999999      4888889998 543


Q ss_pred             E----EEec-cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          76 I----IKRF-NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        76 ~----l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .    +... ....+..+.|+|....++.+|.-+.|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence            2    2222 35578999999999999998876655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=2.6e-06  Score=69.07  Aligned_cols=94  Identities=14%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             ecCCCEEEEEecC-------CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           4 RMRGTHIVLAELR-------DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         4 SPdG~~las~~~~-------~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      ||||++++.....       ..+.+.++|+++++...... ...+....|||||+++|-..       ++.+++++..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-------~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-------DNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-------TTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-------cCceEEEECCCC
Confidence            8999999984210       14789999999976654433 35688999999999999988       778888887433


Q ss_pred             EEEecc--------------------CCcEEEEEEeeCCCeeeecCchh
Q psy5876          76 IIKRFN--------------------SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        76 ~l~~~~--------------------~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ......                    ...-..+.|||||+.|+....|.
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~  122 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE  122 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence            222211                    11235688999999999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.31  E-value=1.7e-05  Score=64.12  Aligned_cols=97  Identities=11%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--Cce--EEeeec-------c-CceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFS--VMNAAE-------H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~--~~~~~~-------~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      +.|+|||+++.+... .+++|.+++.+  +++  .+....       . .....|+.||||++|.++..     ..+.|.
T Consensus       197 ~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~  270 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSIS  270 (345)
T ss_dssp             EEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEE
T ss_pred             EEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEE
Confidence            479999999987765 58999999977  443  222221       1 25789999999999988774     588999


Q ss_pred             EEeec---CcEE--Eecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876          69 QWSFQ---GKII--KRFN--SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        69 iW~~~---g~~l--~~~~--~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +|+++   |++-  ....  ...=.+++++|+|++|+.+.++
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            99993   4432  2222  3457899999999999977643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4227|consensus

Probab=98.30  E-value=2.9e-06  Score=69.82  Aligned_cols=98  Identities=11%  Similarity=0.146  Sum_probs=78.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC------ceEEe--eecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------FSVMN--AAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~------~~~~~--~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      |.||.+|++||+||  +|-.+++|.++.      .+.+.  ..+| ..|.+++|....+++.+|.      .+++|..-|
T Consensus        62 lqFS~N~~~L~SGG--DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~~VI~HD  133 (609)
T KOG4227|consen   62 LQFSHNDRFLASGG--DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWGTVIKHD  133 (609)
T ss_pred             eeeccCCeEEeecC--CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------CcceeEeee
Confidence            57999999999999  789999999772      34443  2334 5799999999999999999      689998899


Q ss_pred             ecC-cEEEecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          72 FQG-KIIKRFN----SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        72 ~~g-~~l~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +.. +.|.-..    ...|+.+.-+|....+++.++++.|
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV  173 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence            954 4454332    3479999999999999999888754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.30  E-value=9.3e-06  Score=66.66  Aligned_cols=88  Identities=16%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce-EEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-C
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA-TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-S   82 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v-~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~   82 (143)
                      ++++++... .+|.|.+.|..+.+.+.+++. ..+ ..+.++|||||+.+++      .|+.+.++|+ +++.+.+.. .
T Consensus         5 ~~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~------rdg~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    5 GNLFYVVER-GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN------RDGTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GGEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE------TTSEEEEEETTSSSEEEEEE-S
T ss_pred             ccEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc------CCCeEEEEECCcccEEEEEecC
Confidence            345555544 479999999999988888753 333 5678999999999988      5899999999 577787765 5


Q ss_pred             CcEEEEEEeeCCCeeeecC
Q psy5876          83 PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        83 ~~v~~l~wsP~~~~l~s~s  101 (143)
                      ..-..++++|||++++.+.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEE
T ss_pred             CCcceEEEcCCCCEEEEEe
Confidence            5678899999999999765

...

>KOG4328|consensus

Probab=98.29  E-value=2e-06  Score=71.33  Aligned_cols=97  Identities=14%  Similarity=0.335  Sum_probs=72.8

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceE-Ee--eeccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec---Cc
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSV-MN--AAEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ---GK   75 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~--~~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~---g~   75 (143)
                      |+.+.+.++.++  .=|.+.+||..+... ..  ..+...|++++++|.-. +|||||      .|.+.+|||..   ++
T Consensus       287 ~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s------~D~T~kIWD~R~l~~K  358 (498)
T KOG4328|consen  287 FSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS------LDQTAKIWDLRQLRGK  358 (498)
T ss_pred             ccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc------cCcceeeeehhhhcCC
Confidence            455555555555  247899999876432 11  22345899999999876 678888      79999999983   44


Q ss_pred             E---EEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 I---IKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~---l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .   |+.. |...|.+..|||.+-.|+|.++|.+||
T Consensus       359 ~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  359 ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             CCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            3   5554 467899999999999999999999887

>KOG0307|consensus

Probab=98.28  E-value=7.1e-07  Score=80.16  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=69.3

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      +.|+|.+. .||+|+  .||.|.|||+++.+.-.+..    ...|.+++|+..-++|.+..+     .++..-|||+..+
T Consensus       122 LDfN~~q~nlLASGa--~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-----~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  122 LDFNPFQGNLLASGA--DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-----PSGRAVIWDLRKK  194 (1049)
T ss_pred             eeccccCCceeeccC--CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-----CCCCceeccccCC
Confidence            35788777 888888  69999999999765544432    246999999998776544442     4668889999755


Q ss_pred             -EEEec--cC--CcEEEEEEeeCCC-eeeecCchh
Q psy5876          76 -IIKRF--NS--PTFCQLRWRPRPA-SLLSKEQVD  104 (143)
Q Consensus        76 -~l~~~--~~--~~v~~l~wsP~~~-~l~s~s~d~  104 (143)
                       .+-++  +.  -.+..++|+|+.. .|+.+++|.
T Consensus       195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd  229 (1049)
T KOG0307|consen  195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD  229 (1049)
T ss_pred             CcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence             34333  22  3588999999984 566666655

>KOG4328|consensus

Probab=98.22  E-value=4.4e-06  Score=69.40  Aligned_cols=96  Identities=10%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCce-----EEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFS-----VMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~-----~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      |+++|-.. +||+||  .|++.+|||+....     .+.+.+| ..|.++.|||+|-.|+|.+      .|+.|+|||..
T Consensus       328 v~~NP~~p~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~------~D~~IRv~dss  399 (498)
T KOG4328|consen  328 VALNPVCPWFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC------QDNEIRVFDSS  399 (498)
T ss_pred             eecCCCCchheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec------cCCceEEeecc
Confidence            35566554 678888  69999999987421     3555555 5799999999999999998      69999999983


Q ss_pred             --Cc---EEEe-cc---C-C--cEEEEEEeeCCCeeeecCchh
Q psy5876          74 --GK---IIKR-FN---S-P--TFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        74 --g~---~l~~-~~---~-~--~v~~l~wsP~~~~l~s~s~d~  104 (143)
                        +.   .+.. .|   . .  .....+|.|+-..++.+-.-.
T Consensus       400 ~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r  442 (498)
T KOG4328|consen  400 CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR  442 (498)
T ss_pred             cccccCCccceeeccCcccccccchhheeCCCccEEEEeccCc
Confidence              11   1111 12   1 1  245679999999888875433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.22  E-value=8.1e-06  Score=69.48  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc----E
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK----I   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~----~   76 (143)
                      ++||+.+.|+.|.  .||.|.+||..++.....-.....+.++|+|+|..|++|+      .-+.+.+||.. +-    +
T Consensus       266 a~sp~E~kLvlGC--~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s------~qGelQ~FD~ALspi~~qL  337 (545)
T PF11768_consen  266 ARSPSEDKLVLGC--EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS------EQGELQCFDMALSPIKMQL  337 (545)
T ss_pred             ecCcccceEEEEe--cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc------CCceEEEEEeecCccceee
Confidence            6899999999999  6999999998876433332235678999999999999999      47899999984 21    1


Q ss_pred             EEec--------------cCCcEEEEEEeeCCCeee
Q psy5876          77 IKRF--------------NSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        77 l~~~--------------~~~~v~~l~wsP~~~~l~   98 (143)
                      +...              +...+-.+.|.|.++..-
T Consensus       338 lsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~  373 (545)
T PF11768_consen  338 LSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSS  373 (545)
T ss_pred             ccccCCCccEEeeehhccCcchhheeEeccCCCccc
Confidence            1110              123567888887777543

>KOG2445|consensus

Probab=98.21  E-value=1.2e-05  Score=64.29  Aligned_cols=99  Identities=11%  Similarity=0.211  Sum_probs=69.3

Q ss_pred             eEecC---CCEEEEEecC---CCCeEEEEECCC-c-e--EEeeec--cCceEEEEECCC-CC---EEEEeecCcceecCC
Q psy5876           2 KLRMR---GTHIVLAELR---DTGSLEFVDTGD-F-S--VMNAAE--HHQATDVEWDPT-GR---YVMSGVSLWKTKADT   65 (143)
Q Consensus         2 ~~SPd---G~~las~~~~---~dg~i~iWd~~~-~-~--~~~~~~--~~~v~~i~wsPd-G~---~lat~s~~~~~~~D~   65 (143)
                      +|+|.   ..+||+|+.+   .-+.+.||..+. + +  .+.++.  ..+|++|+|+|+ ||   .||+++      .|+
T Consensus       176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~------kDg  249 (361)
T KOG2445|consen  176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT------KDG  249 (361)
T ss_pred             eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee------cCc
Confidence            45543   3578888732   014889998653 2 2  333332  358999999996 44   578888      576


Q ss_pred             cEEEEeecCcE---------------------EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          66 GYWQWSFQGKI---------------------IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        66 ~i~iW~~~g~~---------------------l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       |+||++.+.+                     +..+  |...|+.+.|+--|..|.|.++|+.+|
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence             9999986411                     1112  244899999999999999999999998

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.19  E-value=3.5e-06  Score=70.82  Aligned_cols=95  Identities=14%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce---------ecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT---------KADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~---------~~D~~i~iW~   71 (143)
                      ++|||.|++|++..   -..|.+|+...+..+..+.|..|..+.|||.|+||.|.+..++.         ..++.+.+||
T Consensus        38 ~~~SP~G~~l~~~~---~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd  114 (561)
T COG5354          38 VSESPLGTYLFSEH---AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD  114 (561)
T ss_pred             eeecCcchheehhh---ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence            47999999999976   34689999887766777778899999999999999999986641         2355789999


Q ss_pred             ec-CcEEEecc--CCc--EE-EEEEeeCCCeee
Q psy5876          72 FQ-GKIIKRFN--SPT--FC-QLRWRPRPASLL   98 (143)
Q Consensus        72 ~~-g~~l~~~~--~~~--v~-~l~wsP~~~~l~   98 (143)
                      .. |.++..+.  ..+  .+ -+.|+-+..+++
T Consensus       115 ~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A  147 (561)
T COG5354         115 IASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA  147 (561)
T ss_pred             ccCceeEeeccccCCcccccceeeeeecchhhh
Confidence            95 66676653  222  34 677887776554

>KOG1188|consensus

Probab=98.19  E-value=8.9e-06  Score=65.57  Aligned_cols=96  Identities=15%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEee--e-ccC--ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cE-EEe
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNA--A-EHH--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KI-IKR   79 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~--~-~~~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~-l~~   79 (143)
                      +.-+.+|+  .||+|++||+.+......  . .+.  +..+++-.-.++.+++|+.-  .+.+-.+.+||+.. ++ +..
T Consensus        84 ~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~--~~s~A~v~lwDvR~~qq~l~~  159 (376)
T KOG1188|consen   84 PHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL--TRSDASVVLWDVRSEQQLLRQ  159 (376)
T ss_pred             CCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc--ccCceEEEEEEeccccchhhh
Confidence            33566676  599999999886543222  1 222  45555555577788887531  12466889999953 33 443


Q ss_pred             ---ccCCcEEEEEEeeCC-CeeeecCchhhH
Q psy5876          80 ---FNSPTFCQLRWRPRP-ASLLSKEQVDKI  106 (143)
Q Consensus        80 ---~~~~~v~~l~wsP~~-~~l~s~s~d~~i  106 (143)
                         .|.+.|.++.|+|.. ..|+|||-|+.|
T Consensus       160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             hhhhccCcceeEEecCCCCCeEEeecccceE
Confidence               357899999999976 578899999866

>KOG0650|consensus

Probab=98.17  E-value=7.8e-06  Score=69.99  Aligned_cols=60  Identities=17%  Similarity=0.448  Sum_probs=51.8

Q ss_pred             EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCcEEEEEEeeCCCe
Q psy5876          31 VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPTFCQLRWRPRPAS   96 (143)
Q Consensus        31 ~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~v~~l~wsP~~~~   96 (143)
                      .+..+|..-|.+|+-+|.|.+||+|+      .|++++||.+ +|+|+.... ...|.+++|+|.+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGs------dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~  455 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGS------DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL  455 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecC------CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence            34455556799999999999999999      6999999999 799999887 568999999999863

>KOG3914|consensus

Probab=98.12  E-value=7.1e-06  Score=66.99  Aligned_cols=72  Identities=13%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      |+||||+++|.++.  .|+.|++=.....-.+..+   |..-|+.++.-| ++.|+++|      .|+++++||+ +|++
T Consensus       157 VavS~D~~~IitaD--RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s------GD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  157 VAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS------GDKTLRLWDITSGKL  227 (390)
T ss_pred             eeecCCCCEEEEec--CCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC------CCCcEEEEecccCCc
Confidence            58999999999998  6999999776654444443   335688888885 45689998      6999999999 6988


Q ss_pred             EEecc
Q psy5876          77 IKRFN   81 (143)
Q Consensus        77 l~~~~   81 (143)
                      ++.++
T Consensus       228 L~t~d  232 (390)
T KOG3914|consen  228 LDTCD  232 (390)
T ss_pred             ccccc
Confidence            87654

>KOG0974|consensus

Probab=98.10  E-value=1.2e-05  Score=72.01  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECC-CceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE-
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTG-DFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK-   78 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~-~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~-   78 (143)
                      +|++--++++|+  .-|.|.+|+.. +.+.. ...|...|.++.||-||+|+++.|      .|.++++|+++ ++.+. 
T Consensus       141 ~s~~~~~i~~gs--v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S------dDRsiRlW~i~s~~~~~~  212 (967)
T KOG0974|consen  141 DSAEELYIASGS--VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS------DDRSIRLWPIDSREVLGC  212 (967)
T ss_pred             ccCcEEEEEecc--ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe------cCcceeeeecccccccCc
Confidence            567777889887  46889999965 22333 334446799999999999999999      69999999996 33333 


Q ss_pred             e--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 R--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  -|..+|+.+.|.|.  .++|+++|.+-+
T Consensus       213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcr  241 (967)
T KOG0974|consen  213 TGFGHSARVWACCFLPN--RIITVGEDCTCR  241 (967)
T ss_pred             ccccccceeEEEEeccc--eeEEeccceEEE
Confidence            1  25789999999999  999999998876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.10  E-value=2.5e-05  Score=65.64  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=61.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      .-||||++++++.  ....+.+.|++++..  +.+.+...|+...|||++|+||=+-...-  .-..|+++|..|..+..
T Consensus       408 ~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy--~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         408 KVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY--YTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             EEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce--eeeeEEEEecCCCeEEE
Confidence            5689999999997  467777778887754  33444467999999999999998763211  12367788887765544


Q ss_pred             cc--CCcEEEEEEeeCCCee
Q psy5876          80 FN--SPTFCQLRWRPRPASL   97 (143)
Q Consensus        80 ~~--~~~v~~l~wsP~~~~l   97 (143)
                      ..  ...=++=+|-|++..|
T Consensus       484 vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         484 VTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             ecCCcccccCcccCCCCcEE
Confidence            32  2222334555665544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.08  E-value=0.00011  Score=59.40  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=65.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEee---e------------ccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNA---A------------EHHQATDVEWDPTGRYVMSGVSLWKTKAD   64 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~---~------------~~~~v~~i~wsPdG~~lat~s~~~~~~~D   64 (143)
                      ++.+|+|++|+++.. .+|.|.+++++. +.+...   .            ......++.|+|||+++++..-     ..
T Consensus        92 i~~~~~g~~l~vany-~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~  165 (345)
T PF10282_consen   92 IAVDPDGRFLYVANY-GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GA  165 (345)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TT
T ss_pred             EEEecCCCEEEEEEc-cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CC
Confidence            467999999999988 489999999875 432211   1            1134678999999999988763     35


Q ss_pred             CcEEEEeecCc---EEE----ecc-CCcEEEEEEeeCCCeeeec
Q psy5876          65 TGYWQWSFQGK---IIK----RFN-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        65 ~~i~iW~~~g~---~l~----~~~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      ..|.+|+++..   +..    ... ...=.++.|+|+++++...
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe
Confidence            68999999532   322    122 4577899999999987544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0321|consensus

Probab=98.06  E-value=1.3e-05  Score=68.89  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee----eccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA----AEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~----~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      +.|.|-...|++++  .|.++++||+++.+++-.    .|...+.++||.|+.. .|++|+      .|+.|.|||+.  
T Consensus       106 l~wapge~~lVsas--GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg------RDg~illWD~R~n  177 (720)
T KOG0321|consen  106 LKWAPGESLLVSAS--GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG------RDGEILLWDCRCN  177 (720)
T ss_pred             eccCCCceeEEEcc--CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc------CCCcEEEEEEecc
Confidence            46889333555555  599999999997665443    3445799999999888 567777      69999999984  


Q ss_pred             Cc--------EE------------------Eec--cCCcEEE---EEEeeCCCeeeecCc-hhhHH
Q psy5876          74 GK--------II------------------KRF--NSPTFCQ---LRWRPRPASLLSKEQ-VDKIK  107 (143)
Q Consensus        74 g~--------~l------------------~~~--~~~~v~~---l~wsP~~~~l~s~s~-d~~i~  107 (143)
                      +.        ++                  ++.  +...|.+   +-+.-|...|+|++. |+.||
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence            30        00                  000  0122333   445558889999888 88776

>KOG0290|consensus

Probab=98.05  E-value=3.2e-05  Score=61.51  Aligned_cols=89  Identities=15%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceE--Eee---eccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec----CcE
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSV--MNA---AEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ----GKI   76 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~--~~~---~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~----g~~   76 (143)
                      =++|.+++  .|-++.|||++++..  +.+   -|..+|.+|+|+.+|+ .||+.+      .|+.+++||+.    ...
T Consensus       163 p~~igtSS--iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------aDGSvRmFDLR~leHSTI  234 (364)
T KOG0290|consen  163 PNLIGTSS--IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------ADGSVRMFDLRSLEHSTI  234 (364)
T ss_pred             cceeEeec--ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------CCCcEEEEEecccccceE
Confidence            35888888  699999999987521  221   2447899999999887 567777      79999999995    235


Q ss_pred             EEecc--CCcEEEEEEeeCCC-eeeecCch
Q psy5876          77 IKRFN--SPTFCQLRWRPRPA-SLLSKEQV  103 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~-~l~s~s~d  103 (143)
                      +++..  ..++..++|+++.+ +++|-.+|
T Consensus       235 IYE~p~~~~pLlRLswnkqDpnymATf~~d  264 (364)
T KOG0290|consen  235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMD  264 (364)
T ss_pred             EecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence            66653  56899999988764 55565444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=1.3e-05  Score=67.12  Aligned_cols=96  Identities=13%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEE--ECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFV--DTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iW--d~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      +|||||++||.+.. .||...||  |+.+.....-.+.. .-+.-.|||||++|+-.|+-.   .-..|.+.+.+|....
T Consensus       244 ~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~---G~p~I~~~~~~g~~~~  319 (425)
T COG0823         244 AFSPDGSKLAFSSS-RDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRG---GRPQIYLYDLEGSQVT  319 (425)
T ss_pred             cCCCCCCEEEEEEC-CCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCC---CCcceEEECCCCCcee
Confidence            69999999999876 46765555  55443322211222 234779999999999998521   1124666777777554


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecC
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ..  ....-..-.|+|||..|+-.+
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEe
Confidence            33  222222678999999999766

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.04  E-value=2.2e-05  Score=71.29  Aligned_cols=62  Identities=18%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             eEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc-CC-cEEEEEEeeCCCeeeecC
Q psy5876          40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-SP-TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-~~-~v~~l~wsP~~~~l~s~s  101 (143)
                      -..|+|-.||+|||+.+-...-..-..++||+-+|.+..... .+ --..++|+|.|..|++.-
T Consensus       212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence            457899999999999984211001247899999998776543 33 345899999999888864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.03  E-value=6.4e-05  Score=69.21  Aligned_cols=100  Identities=10%  Similarity=0.037  Sum_probs=71.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe-e------------ec----------cCceEEEEECCCCCEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-A------------AE----------HHQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~------------~~----------~~~v~~i~wsPdG~~lat~s~   57 (143)
                      |+|+|||++|.++.. .++.|++||++++.... .            +.          ......++++|+|+.+++-+ 
T Consensus       745 IavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs-  822 (1057)
T PLN02919        745 ISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS-  822 (1057)
T ss_pred             EEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-
Confidence            578999997776654 47899999988654211 1            00          01246899999999777776 


Q ss_pred             CcceecCCcEEEEeecCcEEEecc----------------CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          58 LWKTKADTGYWQWSFQGKIIKRFN----------------SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        58 ~~~~~~D~~i~iW~~~g~~l~~~~----------------~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                           .++.|++||.++..+....                .+.-..++++|+|+.+++.+.+..|+
T Consensus       823 -----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        823 -----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             -----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence                 5889999999765443211                12456899999999999988777776

>KOG3881|consensus

Probab=98.01  E-value=4.3e-05  Score=62.52  Aligned_cols=98  Identities=9%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             eEecC--CCEEEEEecCCCCeEEEEECCCce-EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-
Q psy5876           2 KLRMR--GTHIVLAELRDTGSLEFVDTGDFS-VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-   75 (143)
Q Consensus         2 ~~SPd--G~~las~~~~~dg~i~iWd~~~~~-~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-   75 (143)
                      .|=|.  .+.||+++  .-+.+++||+..++ ++..+.  ..+++++.-.|+|.+|.+|.      .-+.+..||..++ 
T Consensus       209 ~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn------~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  209 RFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN------TKGQLAKFDLRGGK  280 (412)
T ss_pred             eecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec------ccchhheecccCce
Confidence            45444  67888887  57999999998654 455553  46899999999999999998      4678889999655 


Q ss_pred             EEEe-cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR-FN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.. +.  ...+.++.-+|.++.|++++-|..+|
T Consensus       281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR  315 (412)
T KOG3881|consen  281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR  315 (412)
T ss_pred             eeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence            4433 22  56899999999999999999998766

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.97  E-value=0.00014  Score=59.54  Aligned_cols=75  Identities=9%  Similarity=0.060  Sum_probs=57.4

Q ss_pred             EecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           3 LRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         3 ~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      +||||+.|.++...        .+..|.+||+.+++.+.+.+.         ......++||||++|....-.    .++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----p~~  128 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----PSP  128 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC----CCC
Confidence            79999999888740        268999999999988876542         123488999999999877631    378


Q ss_pred             cEEEEeec-CcEEEecc
Q psy5876          66 GYWQWSFQ-GKIIKRFN   81 (143)
Q Consensus        66 ~i~iW~~~-g~~l~~~~   81 (143)
                      .+-+.|+. ++.+.+..
T Consensus       129 ~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658       129 AVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             EEEEEECCCCcEEEEEe
Confidence            99999995 66666554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.96  E-value=1.3e-05  Score=44.09  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=21.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVD   25 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd   25 (143)
                      |+|+|++++|++++  .|++|++||
T Consensus        17 i~~~~~~~~~~s~~--~D~~i~vwd   39 (39)
T PF00400_consen   17 IAWSPDGNFLASGS--SDGTIRVWD   39 (39)
T ss_dssp             EEEETTSSEEEEEE--TTSEEEEEE
T ss_pred             EEEecccccceeeC--CCCEEEEEC
Confidence            57999999999999  699999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0300|consensus

Probab=97.93  E-value=6.1e-05  Score=60.75  Aligned_cols=95  Identities=11%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCC-ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIK   78 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~   78 (143)
                      .|+.+.+++++  .|.+.++||... ..-+..|  |...|+++.|..|.+ +++||      .|.+|+|||+...  .|.
T Consensus       323 HptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS------DDrTvKvWdLrNMRsplA  393 (481)
T KOG0300|consen  323 HPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS------DDRTVKVWDLRNMRSPLA  393 (481)
T ss_pred             CCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecC------CCceEEEeeeccccCcce
Confidence            58888888888  699999999763 2333333  446799999998875 78888      5999999999643  455


Q ss_pred             ecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN-SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ... ...++.++.+-.++.|+-.-+...||
T Consensus       394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvR  423 (481)
T KOG0300|consen  394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVR  423 (481)
T ss_pred             eeecCCccceeEeecCCceEEeccCCceEE
Confidence            554 55788888887777777666665553

>KOG0290|consensus

Probab=97.91  E-value=4.5e-05  Score=60.72  Aligned_cols=97  Identities=13%  Similarity=0.226  Sum_probs=69.5

Q ss_pred             CeEecCCC-----EEEEEecCCCCeEEEEECCC--ce--E---Eeee---c-cCceEEEEECC-CCCEEEEeecCcceec
Q psy5876           1 MKLRMRGT-----HIVLAELRDTGSLEFVDTGD--FS--V---MNAA---E-HHQATDVEWDP-TGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~-----~las~~~~~dg~i~iWd~~~--~~--~---~~~~---~-~~~v~~i~wsP-dG~~lat~s~~~~~~~   63 (143)
                      +.|.|+..     .||+++    -.+|+|.+..  .+  +   +...   + ..++++..|.- |=++|.++|      .
T Consensus       102 ~~wiPd~~g~~pdlLATs~----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS------i  171 (364)
T KOG0290|consen  102 LMWIPDSKGVYPDLLATSS----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS------I  171 (364)
T ss_pred             eEecCCccccCcchhhccc----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec------c
Confidence            45888763     677765    4799999873  11  1   1111   1 24789999986 566788877      7


Q ss_pred             CCcEEEEeec-Cc--EEEe---ccCCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876          64 DTGYWQWSFQ-GK--IIKR---FNSPTFCQLRWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        64 D~~i~iW~~~-g~--~l~~---~~~~~v~~l~wsP~~-~~l~s~s~d~~i~  107 (143)
                      |.+..|||++ |.  .+.+   .|..+|++++|.-.+ ..++|.+.|+.+|
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR  222 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR  222 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence            9999999995 41  1222   357799999999876 5678999999998

>KOG0321|consensus

Probab=97.86  E-value=8.4e-05  Score=64.11  Aligned_cols=97  Identities=15%  Similarity=0.230  Sum_probs=68.3

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEee--------ec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--------AE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--------~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      +.-|...||++|. .|+.|++||+.+......        ++     ..+++++..+..|.||.+.+      .|+.|+.
T Consensus       225 ~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC------tD~sIy~  297 (720)
T KOG0321|consen  225 LFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC------TDNSIYF  297 (720)
T ss_pred             EEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe------cCCcEEE
Confidence            4578889999986 599999999885433221        11     13577888888889877666      4999999


Q ss_pred             EeecCcEE---Eecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          70 WSFQGKII---KRFN----SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        70 W~~~g~~l---~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      |++.+.-+   ..+.    ......-..+||+..|+|++-|+.+
T Consensus       298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a  341 (720)
T KOG0321|consen  298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA  341 (720)
T ss_pred             EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence            99964422   2211    2223345679999999999988754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.85  E-value=0.00023  Score=60.07  Aligned_cols=97  Identities=14%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             EecCCCEEEEEecCCCC-eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE--E
Q psy5876           3 LRMRGTHIVLAELRDTG-SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI--I   77 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg-~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~--l   77 (143)
                      ++-+++-++.|.  .|| .+.|+|.++++.....+ -..|-.+.-+|||++++.+-+      ...+.+.|++ |+.  +
T Consensus       367 ~~~~~e~~vigt--~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd------r~el~vididngnv~~i  438 (668)
T COG4946         367 IQVDPEGDVIGT--NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND------RFELWVIDIDNGNVRLI  438 (668)
T ss_pred             EccCCcceEEec--cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC------ceEEEEEEecCCCeeEe
Confidence            445566677776  477 89999999887544333 367999999999999998772      2344455664 553  3


Q ss_pred             EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.....|.++.|||++.+++=+-.++-+.
T Consensus       439 dkS~~~lItdf~~~~nsr~iAYafP~gy~t  468 (668)
T COG4946         439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYT  468 (668)
T ss_pred             cccccceeEEEEEcCCceeEEEecCcceee
Confidence            334467899999999999999766555443

>KOG0649|consensus

Probab=97.84  E-value=0.00014  Score=56.90  Aligned_cols=102  Identities=11%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC---------ce-EEeee--ccCceEEEEECCCCCEEEEeecC------c----
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD---------FS-VMNAA--EHHQATDVEWDPTGRYVMSGVSL------W----   59 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~---------~~-~~~~~--~~~~v~~i~wsPdG~~lat~s~~------~----   59 (143)
                      +|||-+++|++|+  .+|+|-|..+++         ++ .+..+  +..+++.++|.  .++|++|++.      |    
T Consensus        17 a~sp~~~~l~agn--~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~   92 (325)
T KOG0649|consen   17 AISPSKQYLFAGN--LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEE   92 (325)
T ss_pred             hhCCcceEEEEec--CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhh
Confidence            5899999999988  589998888662         22 12221  23567888887  4566666541      0    


Q ss_pred             ---------c-----------------------------eecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeee
Q psy5876          60 ---------K-----------------------------TKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        60 ---------~-----------------------------~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~   98 (143)
                               +                             ...|..++.||+ +|+..+.+  |.+-|.++.-+.....++
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil  172 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL  172 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence                     0                             024778888999 47765554  577899999988888899


Q ss_pred             ecCchhhHH
Q psy5876          99 SKEQVDKIK  107 (143)
Q Consensus        99 s~s~d~~i~  107 (143)
                      ||++|+++|
T Consensus       173 sG~EDGtvR  181 (325)
T KOG0649|consen  173 SGAEDGTVR  181 (325)
T ss_pred             ecCCCccEE
Confidence            999999998

>KOG4547|consensus

Probab=97.84  E-value=0.00023  Score=60.61  Aligned_cols=89  Identities=9%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~   79 (143)
                      |+.+-..|-+++  .|+.+..|+..+...+....  ...+.+++.+|||+.+++||.        .|++|++. ++.+.+
T Consensus       110 ~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~~  179 (541)
T KOG4547|consen  110 DAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVIT  179 (541)
T ss_pred             cccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEEE
Confidence            455556777777  68999999999887777653  346899999999999999994        79999995 556655


Q ss_pred             c--cCCcEEEEEEeeC-----CCeeeecC
Q psy5876          80 F--NSPTFCQLRWRPR-----PASLLSKE  101 (143)
Q Consensus        80 ~--~~~~v~~l~wsP~-----~~~l~s~s  101 (143)
                      +  |..+|..++|--+     |.++++.-
T Consensus       180 ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  180 FTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             ecCCCcceEEEEEEEeccccccceeeecc
Confidence            5  4779999999988     78888753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00039  Score=56.32  Aligned_cols=98  Identities=11%  Similarity=0.163  Sum_probs=70.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--c--eEEeee---c-----cCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--F--SVMNAA---E-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~--~~~~~~---~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      |.|+|+|++.-+.+. .+++|.+|..+.  +  +.+++.   +     ......|..+||||||.++-.     ..+.|.
T Consensus       196 i~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-----g~dsI~  269 (346)
T COG2706         196 IVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-----GHDSIA  269 (346)
T ss_pred             EEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-----CCCeEE
Confidence            579999998877655 789999999775  2  233332   2     136889999999999988763     466888


Q ss_pred             EEeec--CcEEEe---ccCCc--EEEEEEeeCCCeeeecCchh
Q psy5876          69 QWSFQ--GKIIKR---FNSPT--FCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        69 iW~~~--g~~l~~---~~~~~--v~~l~wsP~~~~l~s~s~d~  104 (143)
                      +|.++  |..|..   .....  =.++.++|.|..|+.+.++.
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            99884  444432   22222  36889999999999887754

>KOG1036|consensus

Probab=97.82  E-value=0.00013  Score=58.06  Aligned_cols=93  Identities=16%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             CeEecCCCEEEEEecCCCCeE--EEEECC----C----ceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSL--EFVDTG----D----FSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i--~iWd~~----~----~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      |++-|++.=.|+++  .+|.|  ++.|..    +    +++-...+     ..+|++|+|+|--++||||+      .|+
T Consensus       183 v~~~pn~eGy~~sS--ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG------sDG  254 (323)
T KOG1036|consen  183 VALVPNGEGYVVSS--IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG------SDG  254 (323)
T ss_pred             EEEecCCCceEEEe--ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC------CCc
Confidence            35668777677777  58865  445544    1    22211111     14799999999999999999      599


Q ss_pred             cEEEEeecCc-EEEecc--CCcEEEEEEeeCCCeeeecC
Q psy5876          66 GYWQWSFQGK-IIKRFN--SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        66 ~i~iW~~~g~-~l~~~~--~~~v~~l~wsP~~~~l~s~s  101 (143)
                      -|.+||...+ .+..++  ...|..++|+-+|..|+.++
T Consensus       255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  255 IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            9999999654 566555  45699999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.81  E-value=0.00042  Score=56.74  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeec-cCceEEEEECCCCC-EEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++++|||++|.++..+        ..+.|.++|+.+++.+.+.. ...+..+++||||+ +|.+...     .++.+.+.
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsVi  327 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIF  327 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEE
Confidence            4789999988874311        12579999999999988765 45799999999999 7766663     47789999


Q ss_pred             ee-cCcEEEec
Q psy5876          71 SF-QGKIIKRF   80 (143)
Q Consensus        71 ~~-~g~~l~~~   80 (143)
                      |. +++.+.+.
T Consensus       328 D~~t~k~i~~i  338 (352)
T TIGR02658       328 DAETGKELSSV  338 (352)
T ss_pred             ECcCCeEEeee
Confidence            99 47777765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1272|consensus

Probab=97.81  E-value=6.3e-05  Score=62.91  Aligned_cols=123  Identities=12%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCc--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGK--   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~--   75 (143)
                      |++.|+|+|+|++|  .|..++|||+.+...+.+... .+.+.+++|.-|-. |.+-       ...+.||.=  .|.  
T Consensus       299 iAv~~~G~YMaTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglL-A~~~-------G~~v~iw~d~~~~s~~  368 (545)
T KOG1272|consen  299 IAVDRGGRYMATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLL-ALSY-------GDHVQIWKDALKGSGH  368 (545)
T ss_pred             EEECCCCcEEeecc--cccceeEeeeccccccceeecCCCccccccccccce-eeec-------CCeeeeehhhhcCCCC
Confidence            57889999999999  699999999998776666543 57888999987743 3333       346889943  221  


Q ss_pred             --EEEecc--CCcEEEEEEeeC------------CCeeeecCchhhH----HhhhhhhchhccHHhHHHHhhccccce
Q psy5876          76 --IIKRFN--SPTFCQLRWRPR------------PASLLSKEQVDKI----KKSLKKYTPAFEAKDRQRMNKASKYAD  133 (143)
Q Consensus        76 --~l~~~~--~~~v~~l~wsP~------------~~~l~s~s~d~~i----~~~~~~~~~~~e~~~~~~~~~~~~~~~  133 (143)
                        ..+..|  ...|.++.|.|.            ..+||+|+.+...    -..|.+....-|-|.+...++-=-|.|
T Consensus       369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElI  446 (545)
T KOG1272|consen  369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELI  446 (545)
T ss_pred             CCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhE
Confidence              122222  458889999887            2467777765432    244555555556666555555444443

>KOG1517|consensus

Probab=97.80  E-value=5.4e-05  Score=68.57  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             eEecCCC-EEEEEecCCCCeEEEEECCCceE-----Eee-eccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFSV-----MNA-AEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~~-----~~~-~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++.++|- .|++|+  .+|.|++||+.....     +.. .+.+ ..+++.-+++...+|||+      . ..++||+..
T Consensus      1263 slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs------~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS------A-QLIKIYSLS 1333 (1387)
T ss_pred             EeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC------c-ceEEEEecC
Confidence            3445454 488888  699999999875211     111 1213 489999999999999999      4 789999999


Q ss_pred             CcEEEecc---------CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          74 GKIIKRFN---------SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        74 g~~l~~~~---------~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      |+++....         ...+.+++|+|.-..|+.|+.|..|
T Consensus      1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence            99775431         3467899999999999999888765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.79  E-value=0.00054  Score=55.55  Aligned_cols=93  Identities=12%  Similarity=0.165  Sum_probs=69.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC--
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG--   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g--   74 (143)
                      .+.|+|++|++...+.| .|.+|+.+.+++....     +..+...|.|+|+|++......     .+++|-+|..++  
T Consensus       151 ~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~  224 (346)
T COG2706         151 NFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAV  224 (346)
T ss_pred             eeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCC
Confidence            47899999999987544 6889999877654322     2357899999999999887774     689999999964  


Q ss_pred             c---EEEe---cc-----CCcEEEEEEeeCCCeeeec
Q psy5876          75 K---IIKR---FN-----SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        75 ~---~l~~---~~-----~~~v~~l~wsP~~~~l~s~  100 (143)
                      .   .++.   .+     ....-++..+|||+.|...
T Consensus       225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas  261 (346)
T COG2706         225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS  261 (346)
T ss_pred             ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence            2   2222   11     3467899999999988764

>KOG2321|consensus

Probab=97.77  E-value=0.00016  Score=61.87  Aligned_cols=91  Identities=15%  Similarity=0.265  Sum_probs=65.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee---------c----cCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---------E----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---------~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      ..+|--..|++|+  .+|.|++||..+-..+.+.         .    ...|+++.|+-||-.+++|+      .++.+.
T Consensus       182 ~in~~hgLla~Gt--~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt------s~G~v~  253 (703)
T KOG2321|consen  182 SINEEHGLLACGT--EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT------STGSVL  253 (703)
T ss_pred             eecCccceEEecc--cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec------cCCcEE
Confidence            3456667888888  6999999997643222211         1    12599999999999999999      589999


Q ss_pred             EEeec-Cc-EEEecc--CCcEEEEEEeeC--CCeeeec
Q psy5876          69 QWSFQ-GK-IIKRFN--SPTFCQLRWRPR--PASLLSK  100 (143)
Q Consensus        69 iW~~~-g~-~l~~~~--~~~v~~l~wsP~--~~~l~s~  100 (143)
                      |+|+. .+ ++.+.|  .-+|..+.|.+.  ++.++|.
T Consensus       254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             EEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            99995 44 344445  448999999887  4456553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.75  E-value=0.0012  Score=50.50  Aligned_cols=91  Identities=13%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--Cc-----eEEeeeccC--ceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DF-----SVMNAAEHH--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~-----~~~~~~~~~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      |+|||||+.|..+.. ..+.|.-++.+  +.     +.+..+...  ..-.++.+++|+..++..      ..+.|.+++
T Consensus       139 i~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------~~~~I~~~~  211 (246)
T PF08450_consen  139 IAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------GGGRIVVFD  211 (246)
T ss_dssp             EEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------TTTEEEEEE
T ss_pred             eEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------CCCEEEEEC
Confidence            589999998876554 46788888865  22     122223322  377899999999877765      477999999


Q ss_pred             ecCcEEEecc--CCcEEEEEEe-eCCCeee
Q psy5876          72 FQGKIIKRFN--SPTFCQLRWR-PRPASLL   98 (143)
Q Consensus        72 ~~g~~l~~~~--~~~v~~l~ws-P~~~~l~   98 (143)
                      .+|+++....  ...+.+++|. |+...|.
T Consensus       212 p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  212 PDGKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             TTSCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             CCccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            9999887654  4689999994 6765554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0642|consensus

Probab=97.75  E-value=0.0001  Score=62.69  Aligned_cols=99  Identities=16%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--------------------------------------------Eeeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--------------------------------------------MNAAE   36 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--------------------------------------------~~~~~   36 (143)
                      +++|+.-.+|++++  .||++++|+......                                            +..++
T Consensus       402 l~~s~~~~~Llscs--~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~  479 (577)
T KOG0642|consen  402 LALSSTKDRLLSCS--SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE  479 (577)
T ss_pred             eeecccccceeeec--CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecc
Confidence            46788889999999  599999999542111                                            00011


Q ss_pred             ---------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          37 ---------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        37 ---------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                               ...+..+.|.|.+-...++.      .|..|+++|. .|..++..  +...|.++++-|+|..|++++.|.
T Consensus       480 s~~~~~~~~~~~in~vVs~~~~~~~~~~h------ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  480 SSASPGPRRYPQINKVVSHPTADITFTAH------EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             ccCCCcccccCccceEEecCCCCeeEecc------cCCceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence                     01245667777777777766      6889999998 58888864  578899999999999999999999


Q ss_pred             hHH
Q psy5876         105 KIK  107 (143)
Q Consensus       105 ~i~  107 (143)
                      .++
T Consensus       554 sv~  556 (577)
T KOG0642|consen  554 SVR  556 (577)
T ss_pred             eee
Confidence            876

>KOG0649|consensus

Probab=97.74  E-value=0.00048  Score=53.89  Aligned_cols=93  Identities=14%  Similarity=0.072  Sum_probs=62.6

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF   80 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~   80 (143)
                      -|..+-|..++  .|+.++-||+++|+...++  |...+-++.--...-.|.||+      .|++++|||. +++++...
T Consensus       123 dP~enSi~~Ag--GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~------EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  123 DPSENSILFAG--GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA------EDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             ccCCCcEEEec--CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC------CCccEEEEeccccceeEEe
Confidence            46655555555  4999999999999877665  445788887744445688999      7999999999 57776543


Q ss_pred             c----CC------cEEEEEEeeCCCeeeecCchh
Q psy5876          81 N----SP------TFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        81 ~----~~------~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .    .+      .=+-.+..-+..+|++|+.-+
T Consensus       195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK  228 (325)
T ss_pred             ccccChhhcCcccCceeEEEeccCceEEecCCCc
Confidence            2    11      111133344556888876543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.74  E-value=0.00071  Score=54.31  Aligned_cols=99  Identities=9%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             eEecCCCEEEEEecC---CCCeEEEEECC-CceEEeeeccCc--eEEEEECCCCCEEEEeecCc-------c--e---ec
Q psy5876           2 KLRMRGTHIVLAELR---DTGSLEFVDTG-DFSVMNAAEHHQ--ATDVEWDPTGRYVMSGVSLW-------K--T---KA   63 (143)
Q Consensus         2 ~~SPdG~~las~~~~---~dg~i~iWd~~-~~~~~~~~~~~~--v~~i~wsPdG~~lat~s~~~-------~--~---~~   63 (143)
                      .|||||++|.+.-.+   ..|.|-+||.. +.+.+.++..+.  .-.+.|.|||+.|+.+-..-       |  +   .+
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            599999999987433   36899999988 778888876544  46889999999888875421       1  1   24


Q ss_pred             CCcEEEEee-cCcEEEec------cCCcEEEEEEeeCCCeeeec
Q psy5876          64 DTGYWQWSF-QGKIIKRF------NSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        64 D~~i~iW~~-~g~~l~~~------~~~~v~~l~wsP~~~~l~s~  100 (143)
                      +..+-.-|. +|+++.+.      +...+.++++.++|..++-.
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~  180 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM  180 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence            556656655 68887663      23469999999998866543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.00015  Score=60.81  Aligned_cols=97  Identities=11%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             eEecCCCEEEEEecC-CC-CeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCcE
Q psy5876           2 KLRMRGTHIVLAELR-DT-GSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~-~d-g~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~~   76 (143)
                      .|||+|+.++-..+. .. ..+.++|+++++...... ...-..-+|||||++||-++.     .|+  .+++.|++++.
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~-----rdg~~~iy~~dl~~~~  273 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSS-----RDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEEC-----CCCCccEEEEcCCCCc
Confidence            599999998877664 22 358899998765433222 234456789999999998885     344  45566777776


Q ss_pred             EEecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876          77 IKRFN--SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +.++.  ...-.+=.|+|||+.|+=.++.
T Consensus       274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr  302 (425)
T COG0823         274 LPRLTNGFGINTSPSWSPDGSKIVFTSDR  302 (425)
T ss_pred             ceecccCCccccCccCCCCCCEEEEEeCC
Confidence            65542  2222367899999999966543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.69  E-value=0.001  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG   27 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~   27 (143)
                      ++||||+..||.+.  ..|+|+++|+-
T Consensus        49 l~WSpD~tlLa~a~--S~G~i~vfdl~   73 (282)
T PF15492_consen   49 LAWSPDCTLLAYAE--STGTIRVFDLM   73 (282)
T ss_pred             EEECCCCcEEEEEc--CCCeEEEEecc
Confidence            58999999999997  58999999954

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.69  E-value=0.00028  Score=64.24  Aligned_cols=110  Identities=13%  Similarity=0.217  Sum_probs=75.7

Q ss_pred             CeEecCCCEEEEEecC--C--CCeEEEEECCCceEEeeecc-Cc-eEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELR--D--TGSLEFVDTGDFSVMNAAEH-HQ-ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~--~--dg~i~iWd~~~~~~~~~~~~-~~-v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |+|-.||+|+|+++..  .  ...+++|+.+ |++..+.+. .+ -..++|-|.|.+||+....   .....|.+|.-+|
T Consensus       215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~---~~~~~VvFfErNG  290 (928)
T PF04762_consen  215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL---PDRHDVVFFERNG  290 (928)
T ss_pred             EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc---CCCcEEEEEecCC
Confidence            5899999999998763  1  2589999987 666555442 12 3578999999999998731   1234566787777


Q ss_pred             cEEEec--c----CCcEEEEEEeeCCCeeeecCchhhHH----hhhhhhch
Q psy5876          75 KIIKRF--N----SPTFCQLRWRPRPASLLSKEQVDKIK----KSLKKYTP  115 (143)
Q Consensus        75 ~~l~~~--~----~~~v~~l~wsP~~~~l~s~s~d~~i~----~~~~~~~~  115 (143)
                      -.-..+  +    ...|..+.|++++..|+-.-.|. |+    +|+.=|.|
T Consensus       291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK  340 (928)
T PF04762_consen  291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK  340 (928)
T ss_pred             cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence            443332  1    34799999999999998765443 44    55554443

>KOG1310|consensus

Probab=97.69  E-value=5.7e-05  Score=64.45  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=53.9

Q ss_pred             cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe---ccCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876          37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR---FNSPTFCQLRWRPRP--ASLLSKEQVDKIK  107 (143)
Q Consensus        37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~---~~~~~v~~l~wsP~~--~~l~s~s~d~~i~  107 (143)
                      .+-|++++|+.||.+||+||      .|..+.|||+- -++++.   .|...|+++.|-|.-  ..++|++.|+.|+
T Consensus        50 ~GCVN~LeWn~dG~lL~SGS------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   50 TGCVNCLEWNADGELLASGS------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             cceecceeecCCCCEEeecC------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            34589999999999999999      48889999995 445554   357789999998864  6888999999986

>KOG4640|consensus

Probab=97.65  E-value=0.00022  Score=61.48  Aligned_cols=84  Identities=14%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceE-EEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQAT-DVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~-~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      +-|+|.-..||.+.  .+|.|-+...+ .+.+-+++  ..+++ +++|.|||+.||.|-      .|++|++-|+ .|..
T Consensus        26 ~ewnP~~dLiA~~t--~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~------kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   26 IEWNPKMDLIATRT--EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF------KDGTIRLHDVEKGGR   96 (665)
T ss_pred             EEEcCccchhheec--cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe------cCCeEEEEEccCCCc
Confidence            35899999999998  58999999888 55665554  34566 999999999999999      6999999999 4777


Q ss_pred             EEecc---CCcEEEEEEeeC
Q psy5876          77 IKRFN---SPTFCQLRWRPR   93 (143)
Q Consensus        77 l~~~~---~~~v~~l~wsP~   93 (143)
                      +....   ...|....|.|.
T Consensus        97 l~~~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDRI  116 (665)
T ss_pred             eeccccccccchheeecccc
Confidence            77632   567888888743

>KOG0644|consensus

Probab=97.65  E-value=1.9e-05  Score=69.92  Aligned_cols=94  Identities=12%  Similarity=0.205  Sum_probs=78.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      .|--.|++|.+|+  +|..++||.+++..++...  |...+++++-+...-++|++|      .|.-|++|-+ +|..+.
T Consensus       197 ~fDrtg~~Iitgs--dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS------~D~vIrvWrl~~~~pvs  268 (1113)
T KOG0644|consen  197 IFDRTGRYIITGS--DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS------NDKVIRVWRLPDGAPVS  268 (1113)
T ss_pred             eeccccceEeecC--ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc------cCceEEEEecCCCchHH
Confidence            4667899999998  7899999999998888765  335799999999999999999      6999999999 476654


Q ss_pred             e--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 R--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      -  .+...|.+++|+|..    +.++|++.+
T Consensus       269 vLrghtgavtaiafsP~~----sss~dgt~~  295 (1113)
T KOG0644|consen  269 VLRGHTGAVTAIAFSPRA----SSSDDGTCR  295 (1113)
T ss_pred             HHhccccceeeeccCccc----cCCCCCceE
Confidence            3  357789999999987    666777665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.64  E-value=0.00071  Score=57.00  Aligned_cols=105  Identities=14%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecC------------------c---
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSL------------------W---   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~------------------~---   59 (143)
                      ++++|+|+++++++   +|.-.|+.....+....   +...+.+|++.|+|.+--+..                  +   
T Consensus        38 ls~npngr~v~V~g---~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~  111 (443)
T PF04053_consen   38 LSHNPNGRFVLVCG---DGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSV  111 (443)
T ss_dssp             EEE-TTSSEEEEEE---TTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred             EEECCCCCEEEEEc---CCEEEEEEccCCccccc---CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence            47899999999988   88888998554433322   234456677766654333210                  0   


Q ss_pred             ---------ceecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCchhh--HHhhhh
Q psy5876          60 ---------KTKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK--IKKSLK  111 (143)
Q Consensus        60 ---------~~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~--i~~~~~  111 (143)
                               ....++.+.+||.+ ++.+++.....|..+.|+|+|..++-.+.+..  .++++.
T Consensus       112 ~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  112 EKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             EEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             ceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence                     01234568899995 78888888777999999999998887766542  234444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3914|consensus

Probab=97.61  E-value=0.00018  Score=58.98  Aligned_cols=83  Identities=13%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEec---cCCcEEEEEEee
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRF---NSPTFCQLRWRP   92 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~---~~~~v~~l~wsP   92 (143)
                      ...+.+|....+.+.....| ..+++++||||+++|+|+.      .|..|+|=.+-+ ..+..+   |...|..++.-|
T Consensus       131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD------RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD------RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec------CCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence            34555555555554444434 5789999999999999999      688899855533 234332   466788999886


Q ss_pred             CCCeeeecCchhhHH
Q psy5876          93 RPASLLSKEQVDKIK  107 (143)
Q Consensus        93 ~~~~l~s~s~d~~i~  107 (143)
                      +.. |+|+|.|++++
T Consensus       205 ~~~-LlS~sGD~tlr  218 (390)
T KOG3914|consen  205 NYL-LLSGSGDKTLR  218 (390)
T ss_pred             Cce-eeecCCCCcEE
Confidence            655 99999999998

>KOG0280|consensus

Probab=97.60  E-value=0.00044  Score=55.13  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CEEEEEecCCCCeEEEEECCC-ceEEee---eccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--CcEEEec
Q psy5876           8 THIVLAELRDTGSLEFVDTGD-FSVMNA---AEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKRF   80 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~-~~~~~~---~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~~   80 (143)
                      +.+-+||  +||.+..||+.- .+.+..   .|+.+|.+|.=|| .+.+|+||+      -|..+++||..  |+.+...
T Consensus       179 nlvytGg--DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  179 NLVYTGG--DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             ceEEecC--CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCccccC
Confidence            4777888  799999999882 233332   3456888887775 588999999      58999999995  8888876


Q ss_pred             c-CCcEEEEEEeeCCC
Q psy5876          81 N-SPTFCQLRWRPRPA   95 (143)
Q Consensus        81 ~-~~~v~~l~wsP~~~   95 (143)
                      . ..+||.+.|+|--.
T Consensus       251 ~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  251 KVGGGVWRIKHHPEIF  266 (339)
T ss_pred             ccccceEEEEecchhh
Confidence            5 67999999999755

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.60  E-value=0.00051  Score=59.78  Aligned_cols=98  Identities=14%  Similarity=0.034  Sum_probs=57.6

Q ss_pred             eEecCCCEEEEEecC----CCC--eEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc------eecCCcEEE
Q psy5876           2 KLRMRGTHIVLAELR----DTG--SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK------TKADTGYWQ   69 (143)
Q Consensus         2 ~~SPdG~~las~~~~----~dg--~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~------~~~D~~i~i   69 (143)
                      +.||||+.+|.....    .|.  .|.+++........+ .....+.-.|||||+.|++.+...+      ....+.+.+
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~  434 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR  434 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence            689999998776410    133  455555433221112 2234788999999999988873200      001223333


Q ss_pred             EeecCcEEEeccCCcEEEEEEeeCCCeeeec
Q psy5876          70 WSFQGKIIKRFNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        70 W~~~g~~l~~~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      ..+++..........|.++.|||||.+++-.
T Consensus       435 ~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        435 TPVDASAVASRVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             EeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence            3554433332224579999999999988753

>KOG2321|consensus

Probab=97.54  E-value=0.00025  Score=60.76  Aligned_cols=98  Identities=18%  Similarity=0.329  Sum_probs=76.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCC--EEEEeecCcceecCCcEEEEee-cC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSF-QG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~-~g   74 (143)
                      +.|+.||-.+++|.  .+|.+.|||+.+-+.+..-.|   .+|..+.|-+.+.  .++|..       ...++|||- +|
T Consensus       234 l~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------k~~~kiWd~~~G  304 (703)
T KOG2321|consen  234 LKFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------KRILKIWDECTG  304 (703)
T ss_pred             EEecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-------hHHhhhcccccC
Confidence            47888999999998  689999999987665543322   4799999988744  455544       457899998 58


Q ss_pred             cEEEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..... +...++++++-|++-+++++-+...+.
T Consensus       305 k~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~  338 (703)
T KOG2321|consen  305 KPMASIEPTSDLNDFCFVPGSGMFFTANESSKMH  338 (703)
T ss_pred             CceeeccccCCcCceeeecCCceEEEecCCCcce
Confidence            877665 456799999999999999987777655

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.0018  Score=53.22  Aligned_cols=99  Identities=10%  Similarity=0.102  Sum_probs=62.9

Q ss_pred             eEecCCCEEEEEe-cC--CCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCccee-----cCCcEEEEee
Q psy5876           2 KLRMRGTHIVLAE-LR--DTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTK-----ADTGYWQWSF   72 (143)
Q Consensus         2 ~~SPdG~~las~~-~~--~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~-----~D~~i~iW~~   72 (143)
                      ++||||++||.+- .+  ...++++.|+.+++.+.. +.......++|++||+.|.-........     ....++.|.+
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~  209 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL  209 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence            6899999999762 11  123699999999987653 2322334499999999876665332111     1345677776


Q ss_pred             c-C----cEEEeccC-Cc-EEEEEEeeCCCeeeec
Q psy5876          73 Q-G----KIIKRFNS-PT-FCQLRWRPRPASLLSK  100 (143)
Q Consensus        73 ~-g----~~l~~~~~-~~-v~~l~wsP~~~~l~s~  100 (143)
                      . +    .+++.... .. ...+..+++++.|+-.
T Consensus       210 gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  210 GTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             TS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred             CCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence            2 2    25665543 33 6789999999987743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.50  E-value=0.00097  Score=58.13  Aligned_cols=93  Identities=11%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE------------Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV------------MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~------------~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      +.+||||+++.+++. .++++.+.|+.+.+.            +.+.+ .......+|+++|.-+.|-.      .|+.+
T Consensus       326 V~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf------~dsqv  398 (635)
T PRK02888        326 VNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLF------LDSQI  398 (635)
T ss_pred             eEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEe------eccee
Confidence            578999999999876 689999999987542            22222 23567889999998666666      79999


Q ss_pred             EEEeecC-----------cEEEecc-CCcEEEEEE------eeCCCeeeec
Q psy5876          68 WQWSFQG-----------KIIKRFN-SPTFCQLRW------RPRPASLLSK  100 (143)
Q Consensus        68 ~iW~~~g-----------~~l~~~~-~~~v~~l~w------sP~~~~l~s~  100 (143)
                      ..|+++.           ..+.+.. ....-++.=      .|||++|++.
T Consensus       399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence            9999853           2334332 122333333      6777777774

>KOG1587|consensus

Probab=97.50  E-value=0.00025  Score=61.14  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECC-CceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc---
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK---   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~---   75 (143)
                      .++|=+..+.+++  .|-+++||... .-..+..+.  ...+++++|||.---+....+     .|+.+.|||+.-+   
T Consensus       405 ~~nPF~~k~fls~--gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d-----~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  405 SRNPFYPKNFLSV--GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD-----GDGNLDIWDLLQDDEE  477 (555)
T ss_pred             ecCCCccceeeee--ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc-----CCCceehhhhhccccC
Confidence            4566666555544  38999999977 444444432  245999999998764444443     6999999999422   


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+.+.  .....+.+.|+|.|+.|+.|...+.++
T Consensus       478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             CcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence            22222  245677889999999999998888554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.46  E-value=0.0013  Score=52.05  Aligned_cols=71  Identities=13%  Similarity=0.233  Sum_probs=53.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-c-----eEEe-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F-----SVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~-----~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++-++||+.||+--   |..|+|-...+ +     ++.. +-....=..++||||+..||.+.      ..++|+++|+.
T Consensus         3 ~~~~~~Gk~lAi~q---d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~------S~G~i~vfdl~   73 (282)
T PF15492_consen    3 LALSSDGKLLAILQ---DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE------STGTIRVFDLM   73 (282)
T ss_pred             eeecCCCcEEEEEe---ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc------CCCeEEEEecc
Confidence            35689999999974   89999988653 2     2211 11123457899999999999998      47899999999


Q ss_pred             CcEEEec
Q psy5876          74 GKIIKRF   80 (143)
Q Consensus        74 g~~l~~~   80 (143)
                      |..++..
T Consensus        74 g~~lf~I   80 (282)
T PF15492_consen   74 GSELFVI   80 (282)
T ss_pred             cceeEEc
Confidence            8877654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.42  E-value=0.0031  Score=48.19  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             eEe-cCCCEEEEEecCCCCeEEEEECCCceE--Eeee-----ccCceEEEEECCCCCEEEEeecCcceecC--CcEEEEe
Q psy5876           2 KLR-MRGTHIVLAELRDTGSLEFVDTGDFSV--MNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKAD--TGYWQWS   71 (143)
Q Consensus         2 ~~S-PdG~~las~~~~~dg~i~iWd~~~~~~--~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D--~~i~iW~   71 (143)
                      .+. |+|+++++..    +.+.++|..+++.  +...     .....++++++|+|++.+|..........  +.+..++
T Consensus        46 ~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~  121 (246)
T PF08450_consen   46 AFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID  121 (246)
T ss_dssp             EEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE
T ss_pred             EEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC
Confidence            455 6766666543    4456669887653  3332     12358999999999988887643211111  4466666


Q ss_pred             ecCcEEEec-cCCcEEEEEEeeCCCeee-ecCchhhH
Q psy5876          72 FQGKIIKRF-NSPTFCQLRWRPRPASLL-SKEQVDKI  106 (143)
Q Consensus        72 ~~g~~l~~~-~~~~v~~l~wsP~~~~l~-s~s~d~~i  106 (143)
                      .+|+..... ....-+.++|+|+++.|. +.+..+.|
T Consensus       122 ~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i  158 (246)
T PF08450_consen  122 PDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI  158 (246)
T ss_dssp             TTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence            665432222 245678999999998765 55544443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3881|consensus

Probab=97.41  E-value=0.0011  Score=54.44  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=71.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEee-ec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-AE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l   77 (143)
                      ..-|+|++|.+|.  .-|.+-.+|..+++++.. +.  .+.+++|.-+|.++++|+++      .|.-++|+|++. +++
T Consensus       254 ~l~p~gn~Iy~gn--~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  254 GLTPSGNFIYTGN--TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eecCCCcEEEEec--ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhh
Confidence            3469999999998  479999999999887654 33  35799999999999999999      799999999976 566


Q ss_pred             Eec-cCCcEEEEEEeeCCCee
Q psy5876          78 KRF-NSPTFCQLRWRPRPASL   97 (143)
Q Consensus        78 ~~~-~~~~v~~l~wsP~~~~l   97 (143)
                      ++. -...++.+-++|+-...
T Consensus       326 ~kvYvKs~lt~il~~~~~n~e  346 (412)
T KOG3881|consen  326 HKVYVKSRLTFILLRDDVNIE  346 (412)
T ss_pred             hhhhhhccccEEEecCCcccc
Confidence            654 36788888888776543

>KOG4714|consensus

Probab=97.40  E-value=0.00042  Score=54.53  Aligned_cols=67  Identities=16%  Similarity=0.366  Sum_probs=51.2

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEee---eccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNA---AEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~---~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .|..+.++.+|. .||.+-+||.....-...   -+..++..+-|+| ++..|.|++      .|+.+.-||..+..|
T Consensus       188 hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~wdas~~~l  258 (319)
T KOG4714|consen  188 HPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHWDASTTFL  258 (319)
T ss_pred             CcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEEcCCCceE
Confidence            577777777665 699999999887632221   2346799999999 677999999      799999999886654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.39  E-value=0.00043  Score=59.19  Aligned_cols=64  Identities=11%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-EEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI-IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~-l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+.+++++|+...++.|.      .|+.+.+||..-+. ......-....++|+|+|..++.+++.++++
T Consensus       260 s~v~~ca~sp~E~kLvlGC------~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ  324 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGC------EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQ  324 (545)
T ss_pred             CcceEEecCcccceEEEEe------cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEE
Confidence            4789999999999999999      69999999985332 2222233457899999999999999988876

>KOG1517|consensus

Probab=97.38  E-value=0.0008  Score=61.28  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=68.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEEC-CCCCEEEEeecCcceecCCcEEEEeec--C-
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWD-PTGRYVMSGVSLWKTKADTGYWQWSFQ--G-   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~ws-PdG~~lat~s~~~~~~~D~~i~iW~~~--g-   74 (143)
                      .|-....+|.++|  .-..|+|||+++.++....+.   ..++.++=+ +.|..||.|-      .|+.+++||..  - 
T Consensus      1172 dWqQ~~G~Ll~tG--d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf------aDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTG--DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF------ADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             ehhhhCCeEEecC--CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee------cCCceEEeecccCCc
Confidence            4555555666665  357899999998766655432   235555333 3468888888      69999999984  1 


Q ss_pred             ---cEEEeccCC--cEEEEEEeeCCCe-eeecCchhhHH
Q psy5876          75 ---KIIKRFNSP--TFCQLRWRPRPAS-LLSKEQVDKIK  107 (143)
Q Consensus        75 ---~~l~~~~~~--~v~~l~wsP~~~~-l~s~s~d~~i~  107 (143)
                         -+..+.+.+  +|..+.++++|-. |+|++.++.|+
T Consensus      1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             cccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence               123344444  4999999998865 99999999886

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.37  E-value=0.0012  Score=55.69  Aligned_cols=57  Identities=12%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      |..|...+   ++.|.|||..+++.+.+.+..+|..+.|||+|.++|-.+       +.++.|.+.+
T Consensus       117 G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t-------~~~i~il~~~  173 (443)
T PF04053_consen  117 GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT-------KDSIYILKYN  173 (443)
T ss_dssp             SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--------S-SEEEEEE-
T ss_pred             CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-------CCeEEEEEec
Confidence            78888876   568999999999999998766799999999999999998       4566676654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.33  E-value=0.0012  Score=33.45  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=25.7

Q ss_pred             cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876          37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus        37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ...+.+++|+|+++++++++      .|+.+++|+
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~------~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASAS------DDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEec------CCCeEEEcC
Confidence            35799999999999999999      689999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4547|consensus

Probab=97.29  E-value=0.003  Score=53.94  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=72.3

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeec---c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      |-..||.|.  ..|.|.++++..+++..++.   | ..|+.+.|+.+-..|-+++      .|..+..|++. ++.+.++
T Consensus        69 ~t~~lvlgt--~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~------ad~~v~~~~~~~~~~~~~~  140 (541)
T KOG4547|consen   69 DTSMLVLGT--PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG------ADLKVVYILEKEKVIIRIW  140 (541)
T ss_pred             CceEEEeec--CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC------CceeEEEEecccceeeeee
Confidence            334566665  58999999999988766653   3 5799999999999999999      69999999995 5666665


Q ss_pred             c--CCcEEEEEEeeCCCeeeecCc
Q psy5876          81 N--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        81 ~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .  ...+.+++.+|||..|++++.
T Consensus       141 ~~~~~~~~sl~is~D~~~l~~as~  164 (541)
T KOG4547|consen  141 KEQKPLVSSLCISPDGKILLTASR  164 (541)
T ss_pred             ccCCCccceEEEcCCCCEEEeccc
Confidence            4  667999999999999998874

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.15  E-value=0.0014  Score=53.10  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=36.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEe-eecc------------------CceEEEEECCCCCEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-AAEH------------------HQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~~~~------------------~~v~~i~wsPdG~~lat~s~   57 (143)
                      .|||||++||-..   ++.|.+++..+++... +...                  ..-..+-|||||++||....
T Consensus        49 ~~sP~g~~~~~v~---~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   49 KWSPDGKYIAFVR---DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             EE-SSSTEEEEEE---TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             eeecCCCeeEEEe---cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            6999999999986   7899999977654332 2111                  11246789999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621|consensus

Probab=97.14  E-value=0.0018  Score=56.58  Aligned_cols=98  Identities=10%  Similarity=0.072  Sum_probs=73.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceE-Eeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC----
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG----   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g----   74 (143)
                      +++-.+++|+.|+  ..|.+.+++...++. +.+.  .+..+..++.|++..++|.|+      ..+.|.++-++.    
T Consensus        40 c~dst~~~l~~Gs--S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt------~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   40 CVDATEEYLAMGS--SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT------ASGRVSVFQLNKELPR  111 (726)
T ss_pred             EeecCCceEEEec--ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc------CCceEEeehhhccCCC
Confidence            4567899999998  589999999887653 3333  234567889999998888888      355666776642    


Q ss_pred             cEEEe--c---cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKR--F---NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~--~---~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+++-  .   |...|.+++|++++..+.+|-..++|.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~  149 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVV  149 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEE
Confidence            23321  1   356899999999999999998877775

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.11  E-value=0.0034  Score=58.04  Aligned_cols=66  Identities=11%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---------------cCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---------------HHQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---------------~~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      |+++|+|+.+++-.  .++.|++||..++.......               ......++++|+|+.+++-+      .++
T Consensus       809 vavd~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn  880 (1057)
T PLN02919        809 VLCAKDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNS  880 (1057)
T ss_pred             eeEeCCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCC
Confidence            46899999777765  48999999998766543211               12467899999999877766      588


Q ss_pred             cEEEEeecC
Q psy5876          66 GYWQWSFQG   74 (143)
Q Consensus        66 ~i~iW~~~g   74 (143)
                      .|++||+..
T Consensus       881 ~Irvid~~~  889 (1057)
T PLN02919        881 LIRYLDLNK  889 (1057)
T ss_pred             EEEEEECCC
Confidence            999999953

>KOG1920|consensus

Probab=97.06  E-value=0.0031  Score=58.05  Aligned_cols=58  Identities=14%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             EEEEECCCCCEEEEeecCcceecC-CcEEEEeecCcEEEec-c-CCcEEEEEEeeCCCeeeec
Q psy5876          41 TDVEWDPTGRYVMSGVSLWKTKAD-TGYWQWSFQGKIIKRF-N-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        41 ~~i~wsPdG~~lat~s~~~~~~~D-~~i~iW~~~g~~l~~~-~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      ++|+|--||+|+|+..-..  ..+ ..|++||-+|.+-..- + ...=.+++|.|.|..+++-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~--~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVES--ETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             ceEEEccCCcEEEEEEEec--cCCceeEEEecccchhhcccCcccccccceeecCCCCeEeee
Confidence            3599999999999965211  124 7899999997765543 2 3345689999999999875

>KOG1587|consensus

Probab=96.99  E-value=0.0042  Score=53.75  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceE--E---ee--e-ccCceEEEEECCCCCE--EEEeecCcceecCCcEEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--M---NA--A-EHHQATDVEWDPTGRY--VMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~---~~--~-~~~~v~~i~wsPdG~~--lat~s~~~~~~~D~~i~iW~   71 (143)
                      .|+|.-..+++||. -+|.|.+||+..+..  .   ..  . |..+|+.+.|-.+-.-  |+++|      .|++|..|+
T Consensus       249 ~f~p~~p~ll~gG~-y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s------sDG~i~~W~  321 (555)
T KOG1587|consen  249 KFCPFDPNLLAGGC-YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS------SDGSICSWD  321 (555)
T ss_pred             EeccCCcceEEeec-cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe------cCCcEeeee
Confidence            57787777777776 599999999886543  1   11  1 2257999999887666  89998      599999998


Q ss_pred             ecCcEE-------Ee-c-------cCCcEEEEEEeeCC-CeeeecCchhhHHh-hhhhhchhcc
Q psy5876          72 FQGKII-------KR-F-------NSPTFCQLRWRPRP-ASLLSKEQVDKIKK-SLKKYTPAFE  118 (143)
Q Consensus        72 ~~g~~l-------~~-~-------~~~~v~~l~wsP~~-~~l~s~s~d~~i~~-~~~~~~~~~e  118 (143)
                      ++.-.+       .. .       ....+..+.|.|.. ..++-|++++.|-+ +-+.|...++
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            863211       11 1       12368899998765 57788999999988 5555555554

>KOG3617|consensus

Probab=96.97  E-value=0.00094  Score=59.86  Aligned_cols=97  Identities=11%  Similarity=0.090  Sum_probs=71.2

Q ss_pred             CeEecCCCEEEEEecC--CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELR--DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~--~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ++|.|--.++|+++++  ..|.|.|+- ++|++-...+ ...+++++|+|.--.||.|=      .-+-+-+|..+.+..
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw------e~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGW------EMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhcc------ccceeEEEecCCcee
Confidence            4799999999999987  568888874 4444322111 13467899999987777665      345677898877766


Q ss_pred             Eec---cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          78 KRF---NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        78 ~~~---~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ++.   ++.++..+.|||+|..|+|+-.-+
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence            654   467899999999999999975443

>KOG1188|consensus

Probab=96.93  E-value=0.0065  Score=49.33  Aligned_cols=86  Identities=13%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC--CCCEEEEeecCcceecCCcEEEEeec--CcE-EE--e
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQ--GKI-IK--R   79 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~--g~~-l~--~   79 (143)
                      .+|++-  .+|.|++||..+++.+..+..  ..++.+.|..  .+.-+.+|+      .|++|++||+.  ++. ..  +
T Consensus        42 ~vav~l--Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s------sDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   42 AVAVSL--SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS------SDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eEEEEe--cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec------cCCeEEEEEeecchhhhheecc
Confidence            355543  489999999999887776642  3577888877  355677787      59999999994  332 11  2


Q ss_pred             cc-CCcEEEEEEeeCCCeeeecCc
Q psy5876          80 FN-SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        80 ~~-~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .+ ..++.+++-.-+++.+++|.+
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccc
Confidence            22 357888888778888888754

>KOG4532|consensus

Probab=96.92  E-value=0.013  Score=46.57  Aligned_cols=87  Identities=8%  Similarity=-0.015  Sum_probs=63.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ce-EEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS-VMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~-~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      +++|||++++++.|  +...|-+|.++. .+ ...+..   ...-.+.+||.....+|+++      -|+.+.|||+.  
T Consensus       164 ~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~------Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF------QDGTCAIYDVRNM  235 (344)
T ss_pred             eEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe------cCCcEEEEEeccc
Confidence            36899999999998  567888998874 22 222221   12345678999999999999      59999999995  


Q ss_pred             CcEEEec------cCCcEEEEEEeeCCC
Q psy5876          74 GKIIKRF------NSPTFCQLRWRPRPA   95 (143)
Q Consensus        74 g~~l~~~------~~~~v~~l~wsP~~~   95 (143)
                      +......      +...+..+.|+|.|.
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCc
Confidence            5444322      245689999998775

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.88  E-value=0.0088  Score=52.20  Aligned_cols=89  Identities=11%  Similarity=0.133  Sum_probs=51.7

Q ss_pred             eEecCCCEEEEEecC----------CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEE--
Q psy5876           2 KLRMRGTHIVLAELR----------DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ--   69 (143)
Q Consensus         2 ~~SPdG~~las~~~~----------~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i--   69 (143)
                      +|||||+.|+....+          ..+.+.+.+++.++....+ ...|+.+.|||||+.||.-.       ++.+++  
T Consensus       403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-------~g~v~Va~  474 (591)
T PRK13616        403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-------GGKVYLAV  474 (591)
T ss_pred             eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-------CCEEEEEE
Confidence            699999988877511          0112222233333322211 24699999999999998876       345554  


Q ss_pred             -Eee-cCc-EEE---ec---cCCcEEEEEEeeCCCeee
Q psy5876          70 -WSF-QGK-IIK---RF---NSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        70 -W~~-~g~-~l~---~~---~~~~v~~l~wsP~~~~l~   98 (143)
                       =.- .|. .+.   ..   ..+.+.++.|.+++..++
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V  512 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV  512 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence             222 243 121   11   123468899999998554

>KOG1240|consensus

Probab=96.86  E-value=0.0054  Score=56.70  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=45.8

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCC-------ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGD-------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~-------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      +|++.++++|+  .||+|++||...       .+...+.  +...+..+..-+.|.++|.++      .||.|.+.++
T Consensus      1058 ~~~~s~FvsgS--~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t------~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1058 SEHTSLFVSGS--DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST------KDGSVRVLRI 1127 (1431)
T ss_pred             CCCCceEEEec--CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc------CCCeEEEEEc
Confidence            57779999999  799999999663       1122222  346788999999999999998      4777766554

>KOG2066|consensus

Probab=96.83  E-value=0.0095  Score=52.95  Aligned_cols=88  Identities=11%  Similarity=0.126  Sum_probs=62.5

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCC-----CCEEEEeecCcceecCCcEEEEeec--CcEE
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPT-----GRYVMSGVSLWKTKADTGYWQWSFQ--GKII   77 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPd-----G~~lat~s~~~~~~~D~~i~iW~~~--g~~l   77 (143)
                      +|.|+++|+  .||+|.|-.+.+.+...++. +-++.+|+++||     .+.+++|+       +.++.++.-.  |+..
T Consensus        82 ~Gey~asCS--~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG-------~aglvL~er~wlgnk~  152 (846)
T KOG2066|consen   82 EGEYVASCS--DDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG-------MAGLVLSERNWLGNKD  152 (846)
T ss_pred             CCceEEEec--CCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC-------cceEEEehhhhhcCcc
Confidence            699999999  69999999988776655543 358999999999     77888888       3346665432  3321


Q ss_pred             ---EeccCCcEEEEEEeeCCCeeeecCchh
Q psy5876          78 ---KRFNSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        78 ---~~~~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                         -....++|.++.|+  |..++=+++++
T Consensus       153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G  180 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG  180 (846)
T ss_pred             ceeeecCccceEEEEec--CcEEEEecCCC
Confidence               12235688888886  55666665554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.79  E-value=0.0044  Score=36.24  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ..|..++|+|....||.++      .++.+.|+.++|+.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t------~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGT------EDGEVLVYRLNWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEE------CCCeEEEEECCCcCc
Confidence            4699999999999999999      689999999987765

>PRK10115 protease 2; Provisional

Probab=96.73  E-value=0.028  Score=49.83  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             eEecCCCEEEEEecCCCC----eEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC-
Q psy5876           2 KLRMRGTHIVLAELRDTG----SLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG-   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg----~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g-   74 (143)
                      .|||||++||.+.- .+|    +|++-|+.+++.+.. ..... ..++|+|||+.|+-............++.+++ ++ 
T Consensus       133 ~~Spdg~~la~~~d-~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        133 AITPDNTIMALAED-FLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             EECCCCCEEEEEec-CCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence            68999999998742 223    688889888764322 22222 56999999997776664211001245666776 34 


Q ss_pred             ---cEEEeccCCcEEEEEEee-CCCeeee
Q psy5876          75 ---KIIKRFNSPTFCQLRWRP-RPASLLS   99 (143)
Q Consensus        75 ---~~l~~~~~~~v~~l~wsP-~~~~l~s   99 (143)
                         .++........+-..|.+ +++.++-
T Consensus       211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i  239 (686)
T PRK10115        211 SQDELVYEEKDDTFYVSLHKTTSKHYVVI  239 (686)
T ss_pred             hHCeEEEeeCCCCEEEEEEEcCCCCEEEE
Confidence               245543333344344555 7776653

>KOG1064|consensus

Probab=96.67  E-value=0.0011  Score=63.18  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             CEEEEEecC-CCCeEEEEECCC---ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEecc
Q psy5876           8 THIVLAELR-DTGSLEFVDTGD---FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRFN   81 (143)
Q Consensus         8 ~~las~~~~-~dg~i~iWd~~~---~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~~   81 (143)
                      ..++++|.+ +++.+.+||+.-   .-++.+-|..+++.+++-|.-+.|++|+      .++.+++||+.- ++++.++
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHHHHHHHhh
Confidence            445666655 678999999652   3356666667899999999999999999      699999999954 4455443

>KOG2066|consensus

Probab=96.60  E-value=0.011  Score=52.67  Aligned_cols=84  Identities=14%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCc
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPT   84 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~   84 (143)
                      +++|+.|+.  +|.|++.+.+-.- ...+.|...     .-+|.|+||||      .|+.+.|-.+ +++...+.. ..+
T Consensus        49 ~~~~~~GtH--~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS------~DGkv~I~sl~~~~~~~~~df~rp  114 (846)
T KOG2066|consen   49 DKFFALGTH--RGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCS------DDGKVVIGSLFTDDEITQYDFKRP  114 (846)
T ss_pred             cceeeeccc--cceEEEEecCCcc-ccccccccc-----ccCCceEEEec------CCCcEEEeeccCCccceeEecCCc
Confidence            678888884  7999999865321 222222222     77999999999      6999999988 566666554 678


Q ss_pred             EEEEEEeeC-----CCeeeecCchh
Q psy5876          85 FCQLRWRPR-----PASLLSKEQVD  104 (143)
Q Consensus        85 v~~l~wsP~-----~~~l~s~s~d~  104 (143)
                      +.+++++|+     ..+.++|++.+
T Consensus       115 iksial~Pd~~~~~sk~fv~GG~ag  139 (846)
T KOG2066|consen  115 IKSIALHPDFSRQQSKQFVSGGMAG  139 (846)
T ss_pred             ceeEEeccchhhhhhhheeecCcce
Confidence            999999999     56889998876

>KOG1354|consensus

Probab=96.57  E-value=0.01  Score=48.57  Aligned_cols=63  Identities=16%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeee--------------ccC---ceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA--------------EHH---QATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~--------------~~~---~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      +.||++|+||++=.   --+|.+||++. .+.+.+.              +..   .-..|+||-++.+++|||      
T Consensus       278 vKFs~sGryilsRD---yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs------  348 (433)
T KOG1354|consen  278 VKFSHSGRYILSRD---YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS------  348 (433)
T ss_pred             eEEccCCcEEEEec---cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc------
Confidence            57999999999854   37999999862 2222221              111   234789999999999999      


Q ss_pred             cCCcEEEEee
Q psy5876          63 ADTGYWQWSF   72 (143)
Q Consensus        63 ~D~~i~iW~~   72 (143)
                      -.+-+++++.
T Consensus       349 y~n~frvf~~  358 (433)
T KOG1354|consen  349 YNNVFRVFNL  358 (433)
T ss_pred             ccceEEEecC
Confidence            4778888875

>smart00320 WD40 WD40 repeats

Probab=96.55  E-value=0.0028  Score=32.03  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVD   25 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd   25 (143)
                      +.|+|+++++++++  .||.+++||
T Consensus        18 ~~~~~~~~~~~~~~--~d~~~~~~~   40 (40)
T smart00320       18 VAFSPDGKYLASAS--DDGTIKLWD   40 (40)
T ss_pred             EEECCCCCEEEEec--CCCeEEEcC
Confidence            46899999999998  689999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920|consensus

Probab=96.50  E-value=0.0081  Score=55.43  Aligned_cols=113  Identities=12%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             CeEecCCCEEEEEecC--CC-CeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELR--DT-GSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~--~d-g~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |+|-=||+|+|+....  .+ .+|++||.+ |.+-.+.+  ...=.+++|-|.|..+|+-.+.+   .|+.|.+|.-+|-
T Consensus       201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~---sd~~IvffErNGL  276 (1265)
T KOG1920|consen  201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT---SDSDIVFFERNGL  276 (1265)
T ss_pred             EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC---CCCcEEEEecCCc
Confidence            5788999999995432  23 689999988 54433332  12346789999999999886532   4667989988774


Q ss_pred             EEEe----cc--CCcEEEEEEeeCCCeeee---cCchhhHH----hhhhhhchhc
Q psy5876          76 IIKR----FN--SPTFCQLRWRPRPASLLS---KEQVDKIK----KSLKKYTPAF  117 (143)
Q Consensus        76 ~l~~----~~--~~~v~~l~wsP~~~~l~s---~s~d~~i~----~~~~~~~~~~  117 (143)
                      .-..    ++  ...|..++|+.++..|+.   ..+...|+    +|+.=|.|++
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~  331 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE  331 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE
Confidence            3322    22  224899999999998887   33333344    5665555543

>KOG4714|consensus

Probab=96.46  E-value=0.0022  Score=50.55  Aligned_cols=96  Identities=9%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             CCCEEEEEecC---CCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE--
Q psy5876           6 RGTHIVLAELR---DTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II--   77 (143)
Q Consensus         6 dG~~las~~~~---~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l--   77 (143)
                      .|++|.+++.+   .-+....|+.+-.+.+.  ......|+.++=+|.-+++++++.     .|+.+-+||.... ..  
T Consensus       143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt-----~dg~~~l~d~rn~~~p~S  217 (319)
T KOG4714|consen  143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT-----DDGIVGLWDARNVAMPVS  217 (319)
T ss_pred             cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEec-----CCCeEEEEEcccccchHH
Confidence            45666665432   22345556654322211  112245999999998888777775     5888999999533 21  


Q ss_pred             -EeccCCcEEEEEEeeC-CCeeeecCchhhH
Q psy5876          78 -KRFNSPTFCQLRWRPR-PASLLSKEQVDKI  106 (143)
Q Consensus        78 -~~~~~~~v~~l~wsP~-~~~l~s~s~d~~i  106 (143)
                       .+.+...++.+.|+|. |..|+++++|+.+
T Consensus       218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             HHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence             2345789999999997 4689999999865

>KOG4227|consensus

Probab=96.46  E-value=0.022  Score=47.42  Aligned_cols=90  Identities=11%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI-   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~-   76 (143)
                      +|....++|.+|+  .+|+|..-|+++-+.+..+.+    ..|+.+.-+|....|++.+      .++.|-+||...++ 
T Consensus       112 ~F~~~N~~~~SG~--~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  112 EFDLENRFLYSGE--RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQN  183 (609)
T ss_pred             EEccCCeeEecCC--CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCC
Confidence            5666778888888  699999999998877766533    3699999999999999998      58899999995332 


Q ss_pred             ----EEecc-CCcEEEEEEeeCCCeeee
Q psy5876          77 ----IKRFN-SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        77 ----l~~~~-~~~v~~l~wsP~~~~l~s   99 (143)
                          +.-.. ...++.+.|+|--+.|+.
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~  211 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALIL  211 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEE
Confidence                22122 557899999999876663

>KOG1334|consensus

Probab=96.40  E-value=0.0017  Score=54.83  Aligned_cols=64  Identities=19%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |-|...|+++|+  +-|.|-||+-.+++++.-++  ..-|+++.=+|---.|||++      .|.-||||...+
T Consensus       402 fGPrsEyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~~  467 (559)
T KOG1334|consen  402 FGPRSEYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPLT  467 (559)
T ss_pred             ccCccceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCCc
Confidence            679999999998  67999999999998877554  34689999999999999999      799999999854

>KOG0644|consensus

Probab=96.40  E-value=0.0012  Score=58.84  Aligned_cols=64  Identities=19%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..|+++.|+..|+||+||+      .|..++||+. ++.++....  ...+.+++.+.+..+++++|.|..||
T Consensus       191 naVyca~fDrtg~~Iitgs------dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYIITGS------DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             hheeeeeeccccceEeecC------ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            4699999999999999999      5889999998 578888764  67899999999999999999998877

>KOG1064|consensus

Probab=96.38  E-value=0.0075  Score=57.87  Aligned_cols=99  Identities=9%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G--   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g--   74 (143)
                      +.|+.+|+....+.  .||.+-+|.+.. +.....  |....++..|--  ..+++++...   .++.+.+||..  +  
T Consensus      2257 ~~f~~qGnk~~i~d--~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~---d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVD--GDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSS---DNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred             hhhcccCCceeeec--cCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCC---CCCcccchhcccCccc
Confidence            35888999998887  599999999883 444333  223456666654  5577776432   46689999983  3  


Q ss_pred             cEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      -++++.|...+..+++-|+-+.|+||+.+++|.
T Consensus      2329 s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2329 SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             ceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            277888889999999999999999999999874

>KOG1354|consensus

Probab=96.36  E-value=0.02  Score=46.91  Aligned_cols=94  Identities=11%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ce----EEeee-----c---------cCceEEEEECCCCC--EEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS----VMNAA-----E---------HHQATDVEWDPTGR--YVMSGVSLW   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~----~~~~~-----~---------~~~v~~i~wsPdG~--~lat~s~~~   59 (143)
                      |-|.-.|.+||+|.  .+|.|.++.-+. .+    ....+     +         ...|+.|.|-++|.  +++..+   
T Consensus        31 vef~~~Ge~LatGd--kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst---  105 (433)
T KOG1354|consen   31 VEFDHYGERLATGD--KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST---  105 (433)
T ss_pred             EEeecccceEeecC--CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec---
Confidence            35788999999998  579999988542 11    11111     1         12578999999887  334334   


Q ss_pred             ceecCCcEEEEeecCcEEEe---------------------------------------ccCCcEEEEEEeeCCCeeeec
Q psy5876          60 KTKADTGYWQWSFQGKIIKR---------------------------------------FNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        60 ~~~~D~~i~iW~~~g~~l~~---------------------------------------~~~~~v~~l~wsP~~~~l~s~  100 (143)
                         .|+++++|-+..+....                                       .|.-.|++++++.|++.++|+
T Consensus       106 ---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  106 ---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             ---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence               49999999874211100                                       112368999999999999998


Q ss_pred             Cc
Q psy5876         101 EQ  102 (143)
Q Consensus       101 s~  102 (143)
                      -+
T Consensus       183 Dd  184 (433)
T KOG1354|consen  183 DD  184 (433)
T ss_pred             cc
Confidence            54

>KOG0280|consensus

Probab=96.30  E-value=0.06  Score=43.22  Aligned_cols=99  Identities=15%  Similarity=0.290  Sum_probs=69.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      +.|++-|..++++-  .+|.+.+-+.....+  +++.  |..++..+.|+-.. ..+.+|+      .|+.+..||..  
T Consensus       127 lD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg------DD~~l~~~D~R~p  198 (339)
T KOG0280|consen  127 LDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG------DDGSLSCWDIRIP  198 (339)
T ss_pred             EEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC------CCceEEEEEecCC
Confidence            35899999988876  589888555443222  2222  23567777777433 4778888      59999999996  


Q ss_pred             CcEEEe---ccCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          74 GKIIKR---FNSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~---~~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      ++.+.+   .|..+|.++.=+| +|..|+||+.|..|+
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~  236 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR  236 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence            555543   3466888887765 478999999999887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.057  Score=43.50  Aligned_cols=94  Identities=12%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--ceE-------EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSV-------MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~-------~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      |+|||||+.|-.+.. ..+.|.-++.+.  +..       ....+....-.++-..+|.+-+++..     ..+.|.+|+
T Consensus       168 la~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~-----~g~~v~~~~  241 (307)
T COG3386         168 LAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW-----GGGRVVRFN  241 (307)
T ss_pred             eEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-----CCceEEEEC
Confidence            689999988877764 356777777652  111       11112233456677778877754441     123899999


Q ss_pred             ecCcEEEecc--CCcEEEEEE-eeCCCeeeec
Q psy5876          72 FQGKIIKRFN--SPTFCQLRW-RPRPASLLSK  100 (143)
Q Consensus        72 ~~g~~l~~~~--~~~v~~l~w-sP~~~~l~s~  100 (143)
                      .+|+++....  ...+.+++| .|+...|.-.
T Consensus       242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CCCcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            9999887653  467777888 5666666543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.28  E-value=0.05  Score=42.37  Aligned_cols=94  Identities=15%  Similarity=0.072  Sum_probs=57.8

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe--ecCcEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS--FQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~--~~g~~l   77 (143)
                      .++||||+.+|....+ ....+.++..+...... .....++.-+|+|+|...+...      .+....++.  .+|...
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g~~l~~PS~d~~g~~W~v~~------~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTGGSLTRPSWDPDGWVWTVDD------GSGGVRVVRDSASGTGE  101 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccCCccccccccCCCCEEEEEc------CCCceEEEEecCCCcce
Confidence            3689999988775521 23455555544322211 1335788899999988766655      355555553  344422


Q ss_pred             E---ecc-CC-cEEEEEEeeCCCeeeecC
Q psy5876          78 K---RFN-SP-TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        78 ~---~~~-~~-~v~~l~wsP~~~~l~s~s  101 (143)
                      .   ... .. .|.+|.+||||.+++-..
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEE
Confidence            1   122 22 899999999999887543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1645|consensus

Probab=96.26  E-value=0.019  Score=47.66  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=53.5

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|||..+ .|..++  .+.+|.|.|+.+.-++..+. +..+.+++|.-|.++++=|+.     ..+.|.|||+.
T Consensus       199 lafSp~~~GLl~~as--l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-----~nG~VlvyD~R  266 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLAS--LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-----QNGMVLVYDMR  266 (463)
T ss_pred             hccCccccceeeeec--cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-----cCceEEEEEcc
Confidence            57999988 677777  57899999999877666653 468999999999998777775     57789999983

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.22  E-value=0.029  Score=49.15  Aligned_cols=101  Identities=10%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCC-----ceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      +.+||++...+    +++|.+.|..+     .+.+.... ......+..||||+|+++++.     .++.+-|.|+....
T Consensus       284 ~vkdGK~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~k  354 (635)
T PRK02888        284 AVKAGKFKTIG----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKLD  354 (635)
T ss_pred             hhhCCCEEEEC----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhhh
Confidence            45788877764    46899999887     45555543 356788999999999999885     68899999985321


Q ss_pred             -------------EEecc-CCcEEEEEEeeCCCeeeecCchhhH-Hhhhhh
Q psy5876          77 -------------IKRFN-SPTFCQLRWRPRPASLLSKEQVDKI-KKSLKK  112 (143)
Q Consensus        77 -------------l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i-~~~~~~  112 (143)
                                   ..+.. ...=.+.+|.++|....|-.-|..| |=|+.+
T Consensus       355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                         12222 2223467899999877666554433 334443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.059  Score=43.35  Aligned_cols=98  Identities=12%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             eEecCCCEEEEEecC---CCCeEEEEECCC-ceEEeeeccC--ceEEEEECCCCCEEEEeecCc-------c--e---ec
Q psy5876           2 KLRMRGTHIVLAELR---DTGSLEFVDTGD-FSVMNAAEHH--QATDVEWDPTGRYVMSGVSLW-------K--T---KA   63 (143)
Q Consensus         2 ~~SPdG~~las~~~~---~dg~i~iWd~~~-~~~~~~~~~~--~v~~i~wsPdG~~lat~s~~~-------~--~---~~   63 (143)
                      .|||||++|-..-.+   ..|.|=+||... ++.+-.+..+  ..-.+.|.+|||.++.+....       |  +   .+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            489999999876432   348899999774 3444444333  457899999999998886511       1  1   24


Q ss_pred             CCcEEEEe-ecCcEEEec--c----CCcEEEEEEeeCCCeeee
Q psy5876          64 DTGYWQWS-FQGKIIKRF--N----SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        64 D~~i~iW~-~~g~~l~~~--~----~~~v~~l~wsP~~~~l~s   99 (143)
                      ...+.+-| .+|.+|.+.  .    ...+.+++.-+||....-
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg  242 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG  242 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence            55677778 589888653  1    346888888888875553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.21  E-value=0.17  Score=40.87  Aligned_cols=62  Identities=16%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEeccCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      ..+-+|+++++|+++++.|.     ..+.+.+||. +|+++....-..++.++-.+++ .++|.+.-+.
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsP-----rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSP-----RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQGQL  279 (305)
T ss_pred             CceEEEEEeCCCCEEEEECC-----CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCccE
Confidence            57999999999999988884     5788999988 5888887777888889888888 7777665443

>KOG2041|consensus

Probab=96.10  E-value=0.022  Score=50.68  Aligned_cols=98  Identities=10%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----eE--------E---eee--ccCceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SV--------M---NAA--EHHQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~--------~---~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      +.|+.+..|||.||  .||.+++-.+++.    +.        +   +++  |...|.-+.|+-+.+.|-|..      .
T Consensus        20 ~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD------t   91 (1189)
T KOG2041|consen   20 AEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD------T   91 (1189)
T ss_pred             EEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC------C
Confidence            47899999999999  6999999876531    10        0   112  234689999999888876665      5


Q ss_pred             CCcEEEEee-cCcEEEe----ccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          64 DTGYWQWSF-QGKIIKR----FNSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        64 D~~i~iW~~-~g~~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ++-|.+|=+ .|.-+-.    -....|.+++|+.+|+.+.-.-+|+.|
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav  139 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV  139 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence            788889987 5654332    235679999999999988776666644

>KOG2041|consensus

Probab=96.08  E-value=0.0073  Score=53.54  Aligned_cols=97  Identities=12%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE----eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      +.|+-+.+.|.++.  .+|.|-+|-+-++.=.    ..-...-|.+++|..||..|+..-      .|+.|.+=+++|..
T Consensus        77 vTWNe~~QKLTtSD--t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY------eDGavIVGsvdGNR  148 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSD--TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY------EDGAVIVGSVDGNR  148 (1189)
T ss_pred             EEeccccccccccC--CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE------ccCCEEEEeeccce
Confidence            36888888888877  5899999997765321    111234588999999999999998      68999888888887


Q ss_pred             EEec--cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      +...  ....+.++.|+||.+.++-+-..++
T Consensus       149 IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange  179 (1189)
T KOG2041|consen  149 IWGKELKGQLLAHVLWSEDLEQALFKKANGE  179 (1189)
T ss_pred             ecchhcchheccceeecccHHHHHhhhcCCc
Confidence            7543  2446778999999987776654443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.99  E-value=0.073  Score=40.76  Aligned_cols=62  Identities=11%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeee----------------ccCceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----------------EHHQATDVEWDPTGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----------------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~   66 (143)
                      +..+|++|++-+  .+|.+++||+.+++.+...                ....|..+..+.+|.=|++-+       ++.
T Consensus        18 l~~~~~~Ll~iT--~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------ng~   88 (219)
T PF07569_consen   18 LECNGSYLLAIT--SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------NGD   88 (219)
T ss_pred             EEeCCCEEEEEe--CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------CCC
Confidence            467889988887  6899999999987765432                224688899999999888877       455


Q ss_pred             EEEEeec
Q psy5876          67 YWQWSFQ   73 (143)
Q Consensus        67 i~iW~~~   73 (143)
                      .+.|+.+
T Consensus        89 ~y~y~~~   95 (219)
T PF07569_consen   89 SYSYSPD   95 (219)
T ss_pred             EEEeccc
Confidence            6677775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2695|consensus

Probab=95.98  E-value=0.022  Score=46.58  Aligned_cols=79  Identities=13%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceE---EeeeccC----ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSV---MNAAEHH----QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~---~~~~~~~----~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++++|.+++  .+|+|.+||....++   +.+++.+    .-.-+--.|....|++++      .|=--+||+++ |+++
T Consensus       310 s~q~LmaS~--M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G------dDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  310 SQQKLMASD--MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG------DDCYTRIWSLDSGHLL  381 (425)
T ss_pred             ccceEeecc--CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc------CeeEEEEEecccCcee
Confidence            567888888  589999999875555   6665422    122345567888899888      36677899995 8888


Q ss_pred             Eecc------CCcEEEEEEee
Q psy5876          78 KRFN------SPTFCQLRWRP   92 (143)
Q Consensus        78 ~~~~------~~~v~~l~wsP   92 (143)
                      .+.+      ...+++++|+.
T Consensus       382 ~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eccCCCCccccccccceehhc
Confidence            7754      22466666643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.85  E-value=0.016  Score=33.86  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=22.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG   27 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~   27 (143)
                      ++|+|+...||.+.  .+|.|.++.++
T Consensus        17 ~~w~P~mdLiA~~t--~~g~v~v~Rl~   41 (47)
T PF12894_consen   17 MSWCPTMDLIALGT--EDGEVLVYRLN   41 (47)
T ss_pred             EEECCCCCEEEEEE--CCCeEEEEECC
Confidence            47999999999998  69999999983

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.21  Score=41.07  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++++|+|+++-.+..+ .++++.+-|..+.+.+.+..- ..-..++++|+|.++..+..     .++.+.+.+.++..+.
T Consensus       121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~-----~~~~v~vi~~~~~~v~  195 (381)
T COG3391         121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNS-----DDNTVSVIDTSGNSVV  195 (381)
T ss_pred             EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEec-----CCCeEEEEeCCCccee
Confidence            4789999988887642 268899999888887766432 22389999999997776663     5889999998776555


Q ss_pred             e------cc-CCcEEEEEEeeCCCeeeec
Q psy5876          79 R------FN-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        79 ~------~~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      .      .. ...=..+.++|+|..+...
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEE
Confidence            3      11 2234678999999955543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.76  E-value=0.029  Score=45.58  Aligned_cols=92  Identities=14%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCc------eEEe-----e-----ec--cCceEEEEECCCCCEEEEeecCcceecC
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDF------SVMN-----A-----AE--HHQATDVEWDPTGRYVMSGVSLWKTKAD   64 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~------~~~~-----~-----~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D   64 (143)
                      |+|.-..+.--+. ..|.|++-|+..-      +.+.     .     ++  ...|+++.|+|+||||++-+       =
T Consensus       229 Fhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------y  300 (460)
T COG5170         229 FHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------Y  300 (460)
T ss_pred             cCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------c
Confidence            5666554443222 4799999997621      1110     0     11  13688999999999999876       4


Q ss_pred             CcEEEEeec--CcEEEecc--------------CCcE---EEEEEeeCCCeeeecCc
Q psy5876          65 TGYWQWSFQ--GKIIKRFN--------------SPTF---CQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        65 ~~i~iW~~~--g~~l~~~~--------------~~~v---~~l~wsP~~~~l~s~s~  102 (143)
                      .+++|||+.  ..++.+.+              .+.|   ..+.|+-|.+.++||+.
T Consensus       301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence            689999995  44555431              2233   46888988888888753

>KOG3617|consensus

Probab=95.56  E-value=0.024  Score=51.29  Aligned_cols=87  Identities=11%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~   76 (143)
                      ++|.|..-.|+.| . .-|.+.+|..++.+.-.  ..+..++..+.|||||..++|+.      .-+.+.+|.++  |+.
T Consensus        65 LCWHpe~~vLa~g-w-e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d------~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   65 LCWHPEEFVLAQG-W-EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLD------NPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             hccChHHHHHhhc-c-ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcC------CCceeEEEEeeecccc
Confidence            5788886666665 4 47999999988754322  22346899999999999999998      46778899886  664


Q ss_pred             EEe--c-c--CC--cEEEEEEeeCCC
Q psy5876          77 IKR--F-N--SP--TFCQLRWRPRPA   95 (143)
Q Consensus        77 l~~--~-~--~~--~v~~l~wsP~~~   95 (143)
                      ...  . +  ..  ..+++..+|++.
T Consensus       137 q~~~~~~hel~~~ltl~cfRL~~~~E  162 (1416)
T KOG3617|consen  137 QTSNIMQHELNDQLTLWCFRLSYDRE  162 (1416)
T ss_pred             ccchhhhhHhhceeeEEEEecCCChH
Confidence            332  1 1  22  355666677743

>KOG1240|consensus

Probab=95.53  E-value=0.11  Score=48.50  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEe----eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc--
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMN----AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN--   81 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~----~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~--   81 (143)
                      .|+.+.  ..+.|..||+.+...+.    ...|+.|++++-+|.+.++++|+      ..|.+-+||+. +..+..++  
T Consensus      1165 ~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt------s~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1165 VLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT------SRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             eEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec------CCceEEEEEeecCceeecccCc
Confidence            455555  46889999988654332    33467899999999999999999      47788899996 66777764  


Q ss_pred             -CCcEEEEEEeeCC---CeeeecCc
Q psy5876          82 -SPTFCQLRWRPRP---ASLLSKEQ  102 (143)
Q Consensus        82 -~~~v~~l~wsP~~---~~l~s~s~  102 (143)
                       ..++..+...|-.   ...++++.
T Consensus      1237 ~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             ccCCcceEEeeccCCCCceEEEecc
Confidence             3356666665554   46666654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.46  E-value=0.04  Score=30.13  Aligned_cols=20  Identities=20%  Similarity=0.586  Sum_probs=16.0

Q ss_pred             CceEEEEECCCCCEEEEeec
Q psy5876          38 HQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~   57 (143)
                      ..-...+|||||++|+-++.
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEE
T ss_pred             ccccCEEEecCCCEEEEEec
Confidence            45678899999999998885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.41  E-value=0.17  Score=41.30  Aligned_cols=99  Identities=12%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-------CceEEee-ec------cCceEEEEECCCCCEEEEeecCcc------
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-------DFSVMNA-AE------HHQATDVEWDPTGRYVMSGVSLWK------   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-------~~~~~~~-~~------~~~v~~i~wsPdG~~lat~s~~~~------   60 (143)
                      |+|.|+| .+++..   ....++.|.+       ..+.+.. +.      ++....++|.|||+..++-+....      
T Consensus        77 i~~~~~G-lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~  152 (367)
T TIGR02604        77 LAVAVGG-VYVATP---PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP  152 (367)
T ss_pred             eeEecCC-EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence            4678898 555432   3333454654       1223322 21      345789999999997665552100      


Q ss_pred             -------eecCCcEEEEeecCcEEEecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876          61 -------TKADTGYWQWSFQGKIIKRFN--SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        61 -------~~~D~~i~iW~~~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                             ....+.+.-++.+|..+....  ...-+.++|+|+|..+++...+
T Consensus       153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence                   001134555666665544332  4456789999999988876543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.40  E-value=0.25  Score=43.60  Aligned_cols=78  Identities=14%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             CCeEEEEECCCceEEee--e-ccCceEEEEEC--CCCCEEEEeecCcceecCCcEEEEe-----ec--C---cEEEec--
Q psy5876          18 TGSLEFVDTGDFSVMNA--A-EHHQATDVEWD--PTGRYVMSGVSLWKTKADTGYWQWS-----FQ--G---KIIKRF--   80 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~--~-~~~~v~~i~ws--PdG~~lat~s~~~~~~~D~~i~iW~-----~~--g---~~l~~~--   80 (143)
                      ...+.|||+..+.+-..  + ++..|.++.|.  |||+.+++.+      ..+.|.++.     ..  +   ..+.+.  
T Consensus        50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG------f~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i  123 (631)
T PF12234_consen   50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG------FPHHVLLYTQLRYDYTNKGPSWAPIRKIDI  123 (631)
T ss_pred             CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE------cCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence            45899999998765443  3 23578988886  7999988888      466777653     21  1   123222  


Q ss_pred             ---cCCcEEEEEEeeCCCeeeecC
Q psy5876          81 ---NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        81 ---~~~~v~~l~wsP~~~~l~s~s  101 (143)
                         ...+|.+..|.++|..++..+
T Consensus       124 ~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  124 SSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             ecCCCCCccceeEecCCeEEEEeC
Confidence               256899999999999887654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.37  E-value=0.34  Score=39.02  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             EecCCCEEEEEecCCCCeE-EEEECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEE
Q psy5876           3 LRMRGTHIVLAELRDTGSL-EFVDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKII   77 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i-~iWd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l   77 (143)
                      -+|||++++++.   .|.+ .-||-.  ..+...+.....+..+.|+|||...+.+.       .+.++.=+.  ++...
T Consensus       152 r~~dG~~vavs~---~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-------Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  152 RSSDGRYVAVSS---RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-------GGQIQFSDDPDDGETW  221 (302)
T ss_dssp             E-TTS-EEEEET---TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-------TTEEEEEE-TTEEEEE
T ss_pred             ECCCCcEEEEEC---cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-------CcEEEEccCCCCcccc
Confidence            479999999986   4654 568855  24555554456899999999999866554       334433331  12221


Q ss_pred             Ee----c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KR----F--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~----~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+    .  ..-.+.+++|+|+++..+.++.-..++
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence            11    1  123589999999998888776554443

>KOG4532|consensus

Probab=95.26  E-value=0.13  Score=41.12  Aligned_cols=83  Identities=7%  Similarity=-0.054  Sum_probs=56.5

Q ss_pred             CCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcEEEe---cc-CCcEEEEE
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKR---FN-SPTFCQLR   89 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~---~~-~~~v~~l~   89 (143)
                      |.++++.+++-+..-...+.  -.+.+++.|||++++++.++      -+.|..|.++  +..+.+   .. .+.=...+
T Consensus       137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd------s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD------SRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC------CCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            56666666553222112221  24889999999999999994      5677788884  444332   12 44556689


Q ss_pred             EeeCCCeeeecCchhhH
Q psy5876          90 WRPRPASLLSKEQVDKI  106 (143)
Q Consensus        90 wsP~~~~l~s~s~d~~i  106 (143)
                      |+......+.+.+|+++
T Consensus       211 ~s~~~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTC  227 (344)
T ss_pred             eccCcceEEEEecCCcE
Confidence            99999999999999875

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.25  E-value=0.034  Score=30.42  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=16.6

Q ss_pred             eEecCCCEEEEEecCCC--CeEEEE
Q psy5876           2 KLRMRGTHIVLAELRDT--GSLEFV   24 (143)
Q Consensus         2 ~~SPdG~~las~~~~~d--g~i~iW   24 (143)
                      +|||||++|+-++. .+  |...||
T Consensus        15 ~~SpDGk~i~f~s~-~~~~g~~diy   38 (39)
T PF07676_consen   15 AWSPDGKYIYFTSN-RNDRGSFDIY   38 (39)
T ss_dssp             EE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred             EEecCCCEEEEEec-CCCCCCcCEE
Confidence            69999999998875 45  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4640|consensus

Probab=95.25  E-value=0.038  Score=48.13  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=51.6

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc--CCcEE-EEEEeeCCCeeeecCchhhHH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN--SPTFC-QLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~--~~~v~-~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+.-+.|+|-=..||++.      .++.+-|.-++-+.+-..+  ..++. +++|+|||+.|+-|-.|++|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t------~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRT------EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             cceEEEEEcCccchhheec------cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence            3578899999999999999      4777777777766665554  33555 999999999999999999886

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.08  E-value=0.16  Score=27.74  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEE
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEW   45 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~w   45 (143)
                      |||++|.++.. .+++|.++|..+++.+....- .....++|
T Consensus         1 pd~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNS-GSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeC-CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            89999988876 478999999998877766532 23344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1334|consensus

Probab=95.03  E-value=0.044  Score=46.52  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=73.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c-CceEEEEECC--CCCEEEEeecCcceecCCcEEEEee--c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H-HQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSF--Q   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~-~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~--~   73 (143)
                      |.|...|..|++++  +|-.|.+||=.+++....++  | ..|....|-|  +.+.|++++      .|+.+++=.+  .
T Consensus       148 V~FN~~Gd~l~SgS--DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s------~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  148 VHFNQRGDVLASGS--DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS------RDGQVRVSEILET  219 (559)
T ss_pred             eeecccCceeeccC--ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc------ccCceeeeeeccc
Confidence            46888999999999  78999999977776666654  2 3566666777  456888888      6999987655  4


Q ss_pred             CcEEEe----ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          74 GKIIKR----FNSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~----~~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      |.+...    .+.++|..++.-|+.+ .+.|+++|..+.
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~  258 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF  258 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCccccccccccee
Confidence            544422    2467899999988864 677888887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.97  E-value=0.079  Score=43.11  Aligned_cols=54  Identities=15%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-EEeee--------------ccCce---EEEEECCCCCEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA--------------EHHQA---TDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~--------------~~~~v---~~i~wsPdG~~lat~s~   57 (143)
                      +.|||+|+||++-.   --++.|||++.-+ ++.+.              +...|   ..|.||-|.+++.+||-
T Consensus       286 ~kFs~ngryIlsRd---yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         286 FKFSDNGRYILSRD---YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             eEEcCCCcEEEEec---cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence            47999999999865   4799999987432 33332              11122   46899999999999984

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.86  E-value=0.63  Score=37.56  Aligned_cols=102  Identities=12%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-c-eEEeee------ccCceEEEEECCC----CCEEEEeecC--cceecCCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F-SVMNAA------EHHQATDVEWDPT----GRYVMSGVSL--WKTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~-~~~~~~------~~~~v~~i~wsPd----G~~lat~s~~--~~~~~D~~   66 (143)
                      |+|.|||+.+++-   ..|.|++.+.+. . ..+...      .......++++|+    +...++.+..  .....++.
T Consensus         7 ~a~~pdG~l~v~e---~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~   83 (331)
T PF07995_consen    7 MAFLPDGRLLVAE---RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR   83 (331)
T ss_dssp             EEEETTSCEEEEE---TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred             EEEeCCCcEEEEe---CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence            5899999888764   479999999332 1 122222      1246899999995    5544444421  00001123


Q ss_pred             EEEEeecCc--------EE-Eecc-----CCcEEEEEEeeCCCeeeecCchhh
Q psy5876          67 YWQWSFQGK--------II-KRFN-----SPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        67 i~iW~~~g~--------~l-~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      +.-|..+..        .| ....     .+.-..|.|.|||...++.++...
T Consensus        84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            333444321        11 1111     345678999999988888776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.84  E-value=0.35  Score=40.21  Aligned_cols=101  Identities=11%  Similarity=0.034  Sum_probs=48.2

Q ss_pred             eEecCCCEEEEEecC---CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecC-cc---------eecCCcEE
Q psy5876           2 KLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSL-WK---------TKADTGYW   68 (143)
Q Consensus         2 ~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~-~~---------~~~D~~i~   68 (143)
                      -|+|||..|.--+.-   .+..|.-.|..+++...-.+...+...--||||+++|-=+++ +.         ...+..++
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            389999987653321   233566677777754332333467888899999998765542 21         12334666


Q ss_pred             EEeecCcEE---Ee----cc------CCcEEEEEEeeCCCeeeecCc
Q psy5876          69 QWSFQGKII---KR----FN------SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        69 iW~~~g~~l---~~----~~------~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ++++.....   ..    +.      ...=.+.+|+|||+.++=.|+
T Consensus       324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred             EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence            788753322   11    10      112367899999999986554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.42  E-value=1.1  Score=30.95  Aligned_cols=86  Identities=8%  Similarity=0.084  Sum_probs=54.3

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEeccCCcEE
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFC   86 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~~~~v~   86 (143)
                      +.|++|+  .|..||+|+-+.  .+... +...|+.++-.+.++ |+-+-      .+++|-+|+-.-++-+....+.+.
T Consensus        16 ~eLlvGs--~D~~IRvf~~~e--~~~Ei~e~~~v~~L~~~~~~~-F~Y~l------~NGTVGvY~~~~RlWRiKSK~~~~   84 (111)
T PF14783_consen   16 NELLVGS--DDFEIRVFKGDE--IVAEITETDKVTSLCSLGGGR-FAYAL------ANGTVGVYDRSQRLWRIKSKNQVT   84 (111)
T ss_pred             ceEEEec--CCcEEEEEeCCc--EEEEEecccceEEEEEcCCCE-EEEEe------cCCEEEEEeCcceeeeeccCCCeE
Confidence            4788887  699999999774  44443 456788888877755 66666      477888877654444434445555


Q ss_pred             EEEEeeCC----CeeeecCchh
Q psy5876          87 QLRWRPRP----ASLLSKEQVD  104 (143)
Q Consensus        87 ~l~wsP~~----~~l~s~s~d~  104 (143)
                      ++++-.-.    +-|++|=.++
T Consensus        85 ~~~~~D~~gdG~~eLI~GwsnG  106 (111)
T PF14783_consen   85 SMAFYDINGDGVPELIVGWSNG  106 (111)
T ss_pred             EEEEEcCCCCCceEEEEEecCC
Confidence            55554332    2466654333

>KOG2079|consensus

Probab=94.38  E-value=0.12  Score=47.66  Aligned_cols=89  Identities=18%  Similarity=0.345  Sum_probs=61.5

Q ss_pred             CEEEEEecCCCCeEEEEECCC-ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--c
Q psy5876           8 THIVLAELRDTGSLEFVDTGD-FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--N   81 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~-~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--~   81 (143)
                      ..+|.|+  +-|.+-..|... .......+  ..+|++++|+.||+.++.|-      .+|.|.+||.. ++.++..  +
T Consensus       100 ~~ivi~T--s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~------~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen  100 VPIVIGT--SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL------GDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeEEEEc--CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc------CCCcEEEEEccCCcceeeeeec
Confidence            3566665  356676666443 33233332  35899999999999999888      58999999995 6666543  2


Q ss_pred             ---CCcEEEEEEeeCCCeeeecCchh
Q psy5876          82 ---SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        82 ---~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                         ...|..+.|..++..++++-.-+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~G  197 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGG  197 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCC
Confidence               44677778887888888875555

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.32  E-value=0.87  Score=35.37  Aligned_cols=95  Identities=11%  Similarity=0.125  Sum_probs=56.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEE-CCCc--eEEe--eeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEee---
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVD-TGDF--SVMN--AAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF---   72 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd-~~~~--~~~~--~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~---   72 (143)
                      +|+|+|...+...  .++..+++. ..++  ..+.  ..... .|+.+.+||||..+|.-....   .++.+.+=-+   
T Consensus        72 S~d~~g~~W~v~~--~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---~~~~v~va~V~r~  146 (253)
T PF10647_consen   72 SWDPDGWVWTVDD--GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---GGGRVYVAGVVRD  146 (253)
T ss_pred             cccCCCCEEEEEc--CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecC---CCCeEEEEEEEeC
Confidence            6899987777654  355566663 2222  2222  11112 799999999999988777310   2344554333   


Q ss_pred             -cC--cEEEe---cc---CCcEEEEEEeeCCCeeeecC
Q psy5876          73 -QG--KIIKR---FN---SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        73 -~g--~~l~~---~~---~~~v~~l~wsP~~~~l~s~s  101 (143)
                       +|  ..+..   ..   ...+.+++|.+++..++-+.
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence             35  12211   11   35789999999998777544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.24  E-value=0.16  Score=45.90  Aligned_cols=45  Identities=11%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEe-eec--cCceEEEEECCCCCEEEEee
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMN-AAE--HHQATDVEWDPTGRYVMSGV   56 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~-~~~--~~~v~~i~wsPdG~~lat~s   56 (143)
                      +||+|+  .+|.||+||.- ++.-. .++  +.+|.+|.-+.||++|++.+
T Consensus       590 ~iavgs--~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  590 YIAVGS--NKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC  637 (794)
T ss_pred             eEEEEe--CCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence            888888  68999999943 22222 222  36899999999999987766

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4190|consensus

Probab=94.06  E-value=0.14  Score=44.66  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             CCEEEEEecCCCCeEEEEECCC-------ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGD-------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~-------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      .+-+++++  .|.+|++|.+..       -.+..++  |..+|.++.|-.|-|+++++        |+++.+||. .|++
T Consensus       747 ENSFiSAS--kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------D~giHlWDPFigr~  816 (1034)
T KOG4190|consen  747 ENSFISAS--KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------DGGIHLWDPFIGRL  816 (1034)
T ss_pred             ccceeecc--CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------cCcceeecccccch
Confidence            34456666  599999999762       2244443  34689999999999999864        678999998 6887


Q ss_pred             EEe
Q psy5876          77 IKR   79 (143)
Q Consensus        77 l~~   79 (143)
                      +.+
T Consensus       817 Laq  819 (1034)
T KOG4190|consen  817 LAQ  819 (1034)
T ss_pred             hHh
Confidence            764

>KOG1912|consensus

Probab=94.02  E-value=0.17  Score=45.55  Aligned_cols=83  Identities=18%  Similarity=0.328  Sum_probs=55.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCC-----------E-EEEeecCcceecCCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGR-----------Y-VMSGVSLWKTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~-----------~-lat~s~~~~~~~D~~   66 (143)
                      +.|+|.| .||-|+   -..|.+-|..+.+.+...++  ..|+.+.|+|---           . ||++.      ..+.
T Consensus        21 ~Dw~~~G-LiAygs---hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD------~~Gr   90 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGS---HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD------ISGR   90 (1062)
T ss_pred             cccCccc-eEEEec---CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc------ccCc
Confidence            3588888 677665   36788999888888877653  4699999997422           2 22222      5688


Q ss_pred             EEEEeec-CcEEEec--cCCcEEEEEEeeC
Q psy5876          67 YWQWSFQ-GKIIKRF--NSPTFCQLRWRPR   93 (143)
Q Consensus        67 i~iW~~~-g~~l~~~--~~~~v~~l~wsP~   93 (143)
                      |.+||+- +..+...  +.+.+.+++|-|.
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPA  120 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence            9999994 5444433  3456666766443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.02  E-value=1.3  Score=37.01  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      +.|.++|..++++.   .|.+ +|..+.++     ......    ...++++.|.+|+..+++|.       .+.+....
T Consensus       286 v~~~~dg~l~l~g~---~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~G~v~~s~  354 (398)
T PLN00033        286 MGWRADGGLWLLTR---GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------SGILLRST  354 (398)
T ss_pred             eeEcCCCCEEEEeC---CceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------CCcEEEeC
Confidence            35778888887764   5665 56655543     222221    13589999999999888776       34443333


Q ss_pred             ecCcEEEec---c--CCcEEEEEEeeCCCeeeecCc
Q psy5876          72 FQGKIIKRF---N--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        72 ~~g~~l~~~---~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      -.|+.-...   .  ..+++.+.|.++++-.+++.+
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~  390 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGND  390 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence            234432221   1  457899999988888887743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.86  E-value=0.33  Score=38.00  Aligned_cols=64  Identities=13%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc---CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN---SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ..++.++|+||.+.|++...     ..+.|...+.+|+.+.+.+   ....-.+++--++..+++.+.++.+
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d-----~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L   88 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQD-----EPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL   88 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEET-----TTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred             CCccccEEcCCCCeEEEEEC-----CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence            46999999999888887774     4567777788899988764   3457788888888888887766644

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275|consensus

Probab=93.82  E-value=0.36  Score=44.10  Aligned_cols=66  Identities=11%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce---ecCCcEEEEee
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT---KADTGYWQWSF   72 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~---~~D~~i~iW~~   72 (143)
                      .+++++.+|.  ..|+|-+-|.++.+.++++..+.-+--+|+-.|..|+||+-..|.   -.|.-+++||+
T Consensus       185 ~Nnr~lf~G~--t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  185 YNNRNLFCGD--TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ecCcEEEeec--ccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhh
Confidence            4678888887  589999999999999999865544445688899999999864332   24566666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.73  E-value=1.3  Score=36.34  Aligned_cols=95  Identities=13%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++.+|+|+.+..... .++.|.+.|+.+.+...... ......++++|+|+++..+....   .++.+.+.|.+ ++.+.
T Consensus        79 i~v~~~~~~vyv~~~-~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~---~~~~vsvid~~t~~~~~  154 (381)
T COG3391          79 VAVNPAGNKVYVTTG-DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN---GNNTVSVIDAATNKVTA  154 (381)
T ss_pred             eeeCCCCCeEEEecC-CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc---CCceEEEEeCCCCeEEE
Confidence            356788886666554 36899999987766655443 23678899999999887776411   25777788875 55555


Q ss_pred             ecc--CCcEEEEEEeeCCCeeeec
Q psy5876          79 RFN--SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        79 ~~~--~~~v~~l~wsP~~~~l~s~  100 (143)
                      ...  ..+ ..+++.|+|+.+...
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~  177 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVT  177 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEE
Confidence            543  235 889999999955543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.52  E-value=1.5  Score=36.55  Aligned_cols=89  Identities=12%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             EecCCCEEEEEecCCCCeE-EEEECCC--ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc---
Q psy5876           3 LRMRGTHIVLAELRDTGSL-EFVDTGD--FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK---   75 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i-~iWd~~~--~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~---   75 (143)
                      -+|||++++.+.   .|.+ +-||-..  .+.+.......++.+.|.+||..++++.       ++++ +|+.+ |+   
T Consensus       246 ~~~dG~~~~vg~---~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-------~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        246 RSPDGDYVAVSS---RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-------GGGL-YVSKGTGLTEE  314 (398)
T ss_pred             EcCCCCEEEEEC---CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-------CceE-EEecCCCCccc
Confidence            368888888775   4654 2355332  2444444456789999999999888766       4444 55553 43   


Q ss_pred             --EEEecc----CCcEEEEEEeeCCCeeeecCc
Q psy5876          76 --IIKRFN----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        76 --~l~~~~----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                        .+....    ...+.++.|.++++.++++..
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~  347 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS  347 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence              223222    235899999999887776643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.30  E-value=1.2  Score=35.86  Aligned_cols=96  Identities=11%  Similarity=0.235  Sum_probs=66.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      +.|+|+.+.|.+..  ..+.--+|=..+|.++.+.+.   +..-.|+|.-+|+|.++--      .++.+.++.++  +.
T Consensus        91 LTynp~~rtLFav~--n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE------R~~~l~~~~vd~~t~  162 (316)
T COG3204          91 LTYNPDTRTLFAVT--NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE------RDRALYLFTVDADTT  162 (316)
T ss_pred             eeeCCCcceEEEec--CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh------hcceEEEEEEcCCcc
Confidence            57999999998876  244444666667888877653   2455789999999888755      57888888774  33


Q ss_pred             EEE----ec-----c--CCcEEEEEEeeCCCeeeecCchh
Q psy5876          76 IIK----RF-----N--SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        76 ~l~----~~-----~--~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .+.    +.     .  ..++-.++|.|..++|.-+.+..
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~  202 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN  202 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC
Confidence            322    11     1  23688999999999888765433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.28  E-value=0.74  Score=41.70  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             CCeEEEEECC--CceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-c--CCcEEE
Q psy5876          18 TGSLEFVDTG--DFSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-N--SPTFCQ   87 (143)
Q Consensus        18 dg~i~iWd~~--~~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-~--~~~v~~   87 (143)
                      +..+..||..  ..+++....     ....++++=+.+| +||.||      .++-|++||-.|+.-.+. +  ..+|.+
T Consensus       551 ~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs------~~G~IRLyd~~g~~AKT~lp~lG~pI~~  623 (794)
T PF08553_consen  551 DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGS------NKGDIRLYDRLGKRAKTALPGLGDPIIG  623 (794)
T ss_pred             CCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEe------CCCcEEeecccchhhhhcCCCCCCCeeE
Confidence            5678889965  223443211     2356788888777 688899      699999999777543222 2  579999


Q ss_pred             EEEeeCCCeeeecC
Q psy5876          88 LRWRPRPASLLSKE  101 (143)
Q Consensus        88 l~wsP~~~~l~s~s  101 (143)
                      +.-+.||++||..+
T Consensus       624 iDvt~DGkwilaTc  637 (794)
T PF08553_consen  624 IDVTADGKWILATC  637 (794)
T ss_pred             EEecCCCcEEEEee
Confidence            99999999998654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1409|consensus

Probab=93.26  E-value=0.15  Score=41.77  Aligned_cols=64  Identities=22%  Similarity=0.377  Sum_probs=51.2

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE--EEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI--IKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~--l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+++++|.|..+.|.+|.      .|..+.+||+-|+.  .+.  .+.+.|..+..-+.-+.|+|.++|+.|.
T Consensus       198 ~~~~~l~Wd~~~~~LfSg~------~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  198 GEVTCLKWDPGQRLLFSGA------SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             cceEEEEEcCCCcEEEecc------ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence            5799999999999999999      59999999996542  222  2456777777777888899999988765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.19  E-value=3.1  Score=32.55  Aligned_cols=94  Identities=13%  Similarity=0.250  Sum_probs=59.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      |+|.|+.+.|++..- ..+.|.-.+.+ ++.+.+.+  . ...-.|++.-+|+|+++.-      .++.+.++++.  ++
T Consensus        27 LTy~pd~~tLfaV~d-~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E------r~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQD-EPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEE------RDQRLYIFTIDDDTT   98 (248)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEET------TTTEEEEEEE----T
T ss_pred             cEEcCCCCeEEEEEC-CCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEc------CCCcEEEEEEecccc
Confidence            579998777766653 46777777764 67766643  2 4578899999998887654      46788888882  22


Q ss_pred             EE-----Eec----c---CCcEEEEEEeeCCCeeeecCc
Q psy5876          76 II-----KRF----N---SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        76 ~l-----~~~----~---~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .+     .+.    .   ...+-.++|.|.++.|+.+.+
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE  137 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE  137 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence            11     111    1   236899999999988887644

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2695|consensus

Probab=92.79  E-value=0.36  Score=39.74  Aligned_cols=95  Identities=7%  Similarity=-0.005  Sum_probs=60.7

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCC-----ceEEeee-ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAA-EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ--   73 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~-~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~--   73 (143)
                      |.-.++.+..|.  .+|.|-..|+..     +.+...+ |...|+++.--. ++++|++.+      +++.|++||..  
T Consensus       260 f~~s~nLv~~Gc--RngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~  331 (425)
T KOG2695|consen  260 FAGSDNLVFNGC--RNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRAT  331 (425)
T ss_pred             hcccCCeeEecc--cCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeecc------CcCceeEeeehhh
Confidence            444566777776  589999999764     3344433 445677776555 788888877      79999999984  


Q ss_pred             --CcEEEe--ccCC--cEEEEEEeeCCCeeeecCchhh
Q psy5876          74 --GKIIKR--FNSP--TFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        74 --g~~l~~--~~~~--~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                        ++-+.+  -|.+  .-.-+...|..-.++++++|--
T Consensus       332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             hcccceeeeecccccccccccccccccceEEEccCeeE
Confidence              222433  2322  2223445666667777777754

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.65  E-value=0.76  Score=30.20  Aligned_cols=50  Identities=14%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             CCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876          18 TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      -|.|..||..+.+.+... -...+.|..|||+++|..++.     ..+.|.++..+
T Consensus        35 ~~~Vvyyd~~~~~~va~g-~~~aNGI~~s~~~k~lyVa~~-----~~~~I~vy~~~   84 (86)
T PF01731_consen   35 WGNVVYYDGKEVKVVASG-FSFANGIAISPDKKYLYVASS-----LAHSIHVYKRH   84 (86)
T ss_pred             CceEEEEeCCEeEEeecc-CCCCceEEEcCCCCEEEEEec-----cCCeEEEEEec
Confidence            467888887654433322 245789999999999998886     57788888753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.61  E-value=1.5  Score=39.46  Aligned_cols=63  Identities=17%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             CceEEEEECCCCCEEEEeecCcceecCCcEEE------Eeec-----------------CcEEEec-cCCcEEEEEEeeC
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ------WSFQ-----------------GKIIKRF-NSPTFCQLRWRPR   93 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i------W~~~-----------------g~~l~~~-~~~~v~~l~wsP~   93 (143)
                      +.|..|..||+|+++|-.+.       .++.|      |-..                 |..++.. ....|..+.|+|.
T Consensus        85 f~v~~i~~n~~g~~lal~G~-------~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~  157 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGP-------RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW  157 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcC-------CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence            46889999999999998884       23332      2111                 1111111 2347999999999


Q ss_pred             C---CeeeecCchhhHH
Q psy5876          94 P---ASLLSKEQVDKIK  107 (143)
Q Consensus        94 ~---~~l~s~s~d~~i~  107 (143)
                      +   ..|+-=..|.++|
T Consensus       158 s~~~~~l~vLtsdn~lR  174 (717)
T PF10168_consen  158 SESDSHLVVLTSDNTLR  174 (717)
T ss_pred             CCCCCeEEEEecCCEEE
Confidence            5   6676655666665

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.54  E-value=0.36  Score=39.56  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             eEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-cCCcEEEEEEeeCCCeeeecCch
Q psy5876          40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +...++||||+++|-+-+.... ....++++|+. |+.+... .......+.|.++++.++-...+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~  190 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFD  190 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECS
T ss_pred             eeeeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeC
Confidence            3468999999999877531100 11258899994 6555432 21122239999999988755433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1912|consensus

Probab=92.44  E-value=0.61  Score=42.10  Aligned_cols=80  Identities=23%  Similarity=0.352  Sum_probs=51.6

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC---CCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP---TGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-   81 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP---dG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-   81 (143)
                      .||++.  ..|.|-+||...+..+..+.+  .++.+++|=|   ++|++..+-+     ..+.+.+|+. +|+++-+.. 
T Consensus        81 liAsaD--~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-----~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen   81 LIASAD--ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH-----GSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             eEEecc--ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec-----CCcEEEEEEccCCceeecccc
Confidence            445555  579999999887766665543  4678887764   7776655543     3567888876 477665543 


Q ss_pred             -CCcEEEEEEeeCCC
Q psy5876          82 -SPTFCQLRWRPRPA   95 (143)
Q Consensus        82 -~~~v~~l~wsP~~~   95 (143)
                       ...+.++.+-|-..
T Consensus       154 s~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen  154 SHEILSCFRVDPFDS  168 (1062)
T ss_pred             CCcceeeeeeCCCCc
Confidence             33455566655543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.35  E-value=0.36  Score=35.90  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR   79 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~   79 (143)
                      .+++.++.+++  .++.|..||..+|+.+-+... ..+...- ..++..++.++      .++.++.+|. +|+.+.+
T Consensus        33 ~~~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~------~~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   33 VPDGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGT------SDGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             EEETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEE------TTSEEEEEETTTSCEEEE
T ss_pred             EEeCCEEEEEc--CCCEEEEEECCCCCEEEEeecccccccee-eeccccccccc------ceeeeEecccCCcceeee
Confidence            34667777776  489999999999988765532 1111111 22334444444      3678888885 6887765

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.30  E-value=0.73  Score=37.23  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN   81 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~   81 (143)
                      ++..|..++  .+|.+..+|..+++.+-+.+   .....+...  .|.+|++++      .++.+.++|. +|+.+.+..
T Consensus       278 ~~~~vyv~~--~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~------~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       278 DDNRLYVTD--ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD------FEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             eCCEEEEEC--CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe------CCCEEEEEECCCCCEEEEEE
Confidence            455666655  47888888888877664432   111122111  456777776      5788999998 488876654


Q ss_pred             --CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          82 --SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        82 --~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                        ...+..----.++ .|+-++.|+.|
T Consensus       348 ~~~~~~~~sp~~~~~-~l~v~~~dG~l  373 (377)
T TIGR03300       348 TDGSGIASPPVVVGD-GLLVQTRDGDL  373 (377)
T ss_pred             cCCCccccCCEEECC-EEEEEeCCceE
Confidence              2233222122233 46666666554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.28  E-value=2  Score=34.69  Aligned_cols=89  Identities=9%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEE-EECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEE-eec-CcE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEF-VDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW-SFQ-GKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~i-Wd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW-~~~-g~~   76 (143)
                      .+.|+|.+++++.   .|.+.- +|-.  +.+.+.......++.+.+.|+|+.++.+.       .+.+ +. +.+ |..
T Consensus       179 ~~~~~g~~v~~g~---~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-------~G~~-~~~s~d~G~s  247 (334)
T PRK13684        179 RRSPDGKYVAVSS---RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-------GGQI-RFNDPDDLES  247 (334)
T ss_pred             EECCCCeEEEEeC---CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-------CCEE-EEccCCCCCc
Confidence            4678888887775   565532 2211  23444433346789999999999887766       2222 33 233 322


Q ss_pred             EEe--cc----CCcEEEEEEeeCCCeeeecC
Q psy5876          77 IKR--FN----SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        77 l~~--~~----~~~v~~l~wsP~~~~l~s~s  101 (143)
                      -..  .+    ...+.++.++|++..++.+.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~  278 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGG  278 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEcC
Confidence            111  11    23578899999887666553

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.83  E-value=1.9  Score=34.76  Aligned_cols=83  Identities=13%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             eEEEEECCCceEEee---ec----cCceEEEEECCCCCEEEEeecC----cce-ecCCcEEEEeecCcEEEeccC--CcE
Q psy5876          20 SLEFVDTGDFSVMNA---AE----HHQATDVEWDPTGRYVMSGVSL----WKT-KADTGYWQWSFQGKIIKRFNS--PTF   85 (143)
Q Consensus        20 ~i~iWd~~~~~~~~~---~~----~~~v~~i~wsPdG~~lat~s~~----~~~-~~D~~i~iW~~~g~~l~~~~~--~~v   85 (143)
                      .+.+++.+++..+..   .+    ....+++.-.|||++-++-...    ... +.-+.++-.+..|+.+.....  ..=
T Consensus        86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~  165 (307)
T COG3386          86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence            466777765544222   11    1346799999999988776641    111 112234444444555544332  234


Q ss_pred             EEEEEeeCCCeee-ecCc
Q psy5876          86 CQLRWRPRPASLL-SKEQ  102 (143)
Q Consensus        86 ~~l~wsP~~~~l~-s~s~  102 (143)
                      +.++||||++.|. +-+.
T Consensus       166 NGla~SpDg~tly~aDT~  183 (307)
T COG3386         166 NGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             CceEECCCCCEEEEEeCC
Confidence            6899999997655 4443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.71  E-value=2.5  Score=37.18  Aligned_cols=91  Identities=11%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             CeEecCCC-----EEEEEecCCCCeEEEEECC-----CceEEee--e---ccCce--EEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGT-----HIVLAELRDTGSLEFVDTG-----DFSVMNA--A---EHHQA--TDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~-----~las~~~~~dg~i~iWd~~-----~~~~~~~--~---~~~~v--~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      ++|+|-+.     +||+--   ...|.+|.+.     +.+.+..  -   +..++  ..+.|+|....|+.=..     .
T Consensus        62 lsW~P~~~~~~paLLAVQH---kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-----~  133 (671)
T PF15390_consen   62 LSWAPPCTADTPALLAVQH---KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-----R  133 (671)
T ss_pred             eeecCcccCCCCceEEEec---cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-----C
Confidence            47888753     666654   4689999965     2333221  1   22343  57889999997766552     1


Q ss_pred             CCcEEEEee--cCcEEEe--ccCCcEEEEEEeeCCCeeeec
Q psy5876          64 DTGYWQWSF--QGKIIKR--FNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        64 D~~i~iW~~--~g~~l~~--~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      |-.| +.++  ++..+.-  .....|.+.+|.+||++|+-+
T Consensus       134 dvSV-~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen  134 DVSV-LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             ceeE-eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence            3222 5665  4444432  236689999999999999864

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.64  E-value=1.6  Score=31.86  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             ceEEEEECCCC-----C-EEEEeecCcceecCCcEEEEeecC
Q psy5876          39 QATDVEWDPTG-----R-YVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus        39 ~v~~i~wsPdG-----~-~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      .+..++|||-|     + .||+-+      .++.+.||...+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLT------s~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLT------SNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEc------CCCeEEEEecCC
Confidence            57789999954     3 344444      577788887643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.48  E-value=0.87  Score=40.85  Aligned_cols=64  Identities=14%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC----------Cce--EEee-e----------ccCceEEEEECCCC---CEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG----------DFS--VMNA-A----------EHHQATDVEWDPTG---RYVMS   54 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~----------~~~--~~~~-~----------~~~~v~~i~wsPdG---~~lat   54 (143)
                      |..||+|++||..|  ..| |.|-.+.          .++  .... .          ....|..+.|+|.|   .+|+.
T Consensus        90 i~~n~~g~~lal~G--~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v  166 (717)
T PF10168_consen   90 ISLNPTGSLLALVG--PRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV  166 (717)
T ss_pred             EEECCCCCEEEEEc--CCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence            46799999999998  345 3332221          111  1111 1          11368899999984   67776


Q ss_pred             eecCcceecCCcEEEEeec
Q psy5876          55 GVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus        55 ~s~~~~~~~D~~i~iW~~~   73 (143)
                      =.      .||.+++||+.
T Consensus       167 Lt------sdn~lR~y~~~  179 (717)
T PF10168_consen  167 LT------SDNTLRLYDIS  179 (717)
T ss_pred             Ee------cCCEEEEEecC
Confidence            66      59999999994

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=91.38  E-value=0.89  Score=40.46  Aligned_cols=64  Identities=6%  Similarity=0.067  Sum_probs=39.9

Q ss_pred             ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCch
Q psy5876          39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .+..+.|||||++||-+.+...- ....+++-|+. |..+.......-..++|+||++.++=...+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~-E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~  192 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSR-RQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKH  192 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCc-EEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEec
Confidence            47788999999999988742110 11246677774 553322211112569999999977755443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.20  E-value=3.4  Score=34.47  Aligned_cols=64  Identities=11%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             eEecCCCEEEEEecCCCC------------eEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           2 KLRMRGTHIVLAELRDTG------------SLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg------------~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      +-+|.|..||...   |.            .|+||+.. |+++.+.  ....+-++.|+.+.+.++...       |+.+
T Consensus        35 a~a~~gGpIAi~~---d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~-------dG~v  103 (410)
T PF04841_consen   35 AVAPYGGPIAIIR---DESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQS-------DGTV  103 (410)
T ss_pred             EEcCCCceEEEEe---cCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEc-------CCEE
Confidence            4578888888864   22            58888855 3444443  346799999998776665555       8999


Q ss_pred             EEEeecCcE
Q psy5876          68 WQWSFQGKI   76 (143)
Q Consensus        68 ~iW~~~g~~   76 (143)
                      +++|+.|+.
T Consensus       104 ~vy~~~G~~  112 (410)
T PF04841_consen  104 RVYDLFGEF  112 (410)
T ss_pred             EEEeCCCce
Confidence            999998887

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.91  E-value=6.4  Score=33.55  Aligned_cols=101  Identities=12%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee-------ccCceEEEEECCCC------CEEEEeecCccee---
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA-------EHHQATDVEWDPTG------RYVMSGVSLWKTK---   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~-------~~~~v~~i~wsPdG------~~lat~s~~~~~~---   62 (143)
                      |+|.|||++|++--  ..|.|++++..++.  .+...       .......|+++||=      ++|....+...-.   
T Consensus        35 maflPDG~llVtER--~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        35 LLWGPDNQLWVTER--ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             EEEcCCCeEEEEEe--cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence            57899998887753  25999999865432  22111       13568999999984      2333332110000   


Q ss_pred             -cCCcEEEEeecC--------cEEEe-cc---CCcEEEEEEeeCCCeeeecCch
Q psy5876          63 -ADTGYWQWSFQG--------KIIKR-FN---SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        63 -~D~~i~iW~~~g--------~~l~~-~~---~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                       ....|.-|.++.        +.|.. ..   .+.-..|+|.|||...++.++.
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence             022333344431        12221 21   1234578899999988877765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.88  E-value=2.7  Score=35.10  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYV   52 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~l   52 (143)
                      |+.||+|++||.-.  .+|++.+...+-.+.+..+.   ......+.|--+.--+
T Consensus       222 iavSpng~~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  222 IAVSPNGKFIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             EEECCCCCEEEEEE--CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence            47899999999987  68999888876444444432   1244566665544333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.64  E-value=3.4  Score=33.68  Aligned_cols=94  Identities=15%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             CeEecCCCEEEEEecC---------CCC-eEEEEEC-C-Cce--EEeee--ccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876           1 MKLRMRGTHIVLAELR---------DTG-SLEFVDT-G-DFS--VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKAD   64 (143)
Q Consensus         1 i~~SPdG~~las~~~~---------~dg-~i~iWd~-~-~~~--~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D   64 (143)
                      |+|.|+|+.+++-..+         ..+ .|.+.+- + +++  ....+  .......+++.++| .+++..       .
T Consensus        19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~-------~   90 (367)
T TIGR02604        19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP-------P   90 (367)
T ss_pred             eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC-------C
Confidence            5799999988875210         123 6766653 2 232  12222  12356889999999 555433       2


Q ss_pred             CcEEEEeecC------c--EEEe-cc------CCcEEEEEEeeCCCeeeecCc
Q psy5876          65 TGYWQWSFQG------K--IIKR-FN------SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        65 ~~i~iW~~~g------~--~l~~-~~------~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .-.++.+.+|      +  .+.. +.      ......+.|.|||...++.+.
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~  143 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN  143 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence            2222334432      1  2222 22      234778999999998887663

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.45  E-value=5.2  Score=32.24  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=49.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEE-CCCceEEee----e--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVD-TGDFSVMNA----A--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd-~~~~~~~~~----~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      |.|+|||...+++.   .|.|++=+ .+..+.-..    .  ....+.+++|.|++...|+|+       .+++ +.+.+
T Consensus       192 ~gf~~~~~lw~~~~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-------~G~l-~~S~D  260 (302)
T PF14870_consen  192 MGFSPDGNLWMLAR---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-------SGTL-LVSTD  260 (302)
T ss_dssp             EEE-TTS-EEEEET---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-------TT-E-EEESS
T ss_pred             ceecCCCCEEEEeC---CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-------CccE-EEeCC
Confidence            46899988776652   58888777 333332222    1  124589999999999999887       3333 55554


Q ss_pred             -CcEEEecc-----CCcEEEEEEeeCCCeeeecC
Q psy5876          74 -GKIIKRFN-----SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 -g~~l~~~~-----~~~v~~l~wsP~~~~l~s~s  101 (143)
                       |+-=.+.+     ...++.+.|.+..+-++-+.
T Consensus       261 gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  261 GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             TTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred             CCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence             44333321     45789999987766666554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.36  E-value=8.2  Score=31.02  Aligned_cols=95  Identities=11%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CeEecCCCEEEEEecCCC------CeEEEEECCCceEEeee-----------------ccCceEEEEECCCCCEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDT------GSLEFVDTGDFSVMNAA-----------------EHHQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d------g~i~iWd~~~~~~~~~~-----------------~~~~v~~i~wsPdG~~lat~s~   57 (143)
                      |++.++|.++++.-  .+      ..|.-++.+ ++.+..+                 .....-.++++|||+.|.++..
T Consensus        90 i~~~~~g~~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   90 IAVPPDGSFWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             eEEecCCCEEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            46678898888864  24      567667755 3332211                 1235779999999997777764


Q ss_pred             Cccee-c-------CCcEEEEeec----CcE----EEecc-------CCcEEEEEEeeCCCeee
Q psy5876          58 LWKTK-A-------DTGYWQWSFQ----GKI----IKRFN-------SPTFCQLRWRPRPASLL   98 (143)
Q Consensus        58 ~~~~~-~-------D~~i~iW~~~----g~~----l~~~~-------~~~v~~l~wsP~~~~l~   98 (143)
                      .+... .       ...++|+.++    |..    .+...       ...+.++.+-|+++.|+
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            32110 1       1126666553    322    22222       35789999999999555

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.22  E-value=2.2  Score=35.91  Aligned_cols=86  Identities=12%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEE---EECC-------CceEEee--ecc---CceEEEEEC-----------CCCCEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEF---VDTG-------DFSVMNA--AEH---HQATDVEWD-----------PTGRYVMS   54 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~i---Wd~~-------~~~~~~~--~~~---~~v~~i~ws-----------PdG~~lat   54 (143)
                      ++.||+|..||.|.  .+.-+-+   |+.+       +......  .++   ..|+++.|=           ||...|+.
T Consensus         7 isls~~~d~laiA~--~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V   84 (415)
T PF14655_consen    7 ISLSPDGDLLAIAR--GQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV   84 (415)
T ss_pred             EEecCCCCEEEEEc--CCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence            46799999999996  2333333   7542       1112111  122   357766554           45677787


Q ss_pred             eecCcceecCCcEEEEeecCcEEEe--ccCCcEEEEEEeeCC
Q psy5876          55 GVSLWKTKADTGYWQWSFQGKIIKR--FNSPTFCQLRWRPRP   94 (143)
Q Consensus        55 ~s~~~~~~~D~~i~iW~~~g~~l~~--~~~~~v~~l~wsP~~   94 (143)
                      |.      .++-+++|+-+|.+|+.  +|..+|..+..+...
T Consensus        85 G~------ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~  120 (415)
T PF14655_consen   85 GT------SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTK  120 (415)
T ss_pred             Ee------cccEEEEEeccchHHHHHhcCccceEEEEecccC
Confidence            77      58899999999998875  467788888886543

>KOG1645|consensus

Probab=90.15  E-value=0.72  Score=38.62  Aligned_cols=76  Identities=7%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             EEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeecCcEEE-ec-cCCcEEEEEEeeCCC
Q psy5876          21 LEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQGKIIK-RF-NSPTFCQLRWRPRPA   95 (143)
Q Consensus        21 i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~g~~l~-~~-~~~~v~~l~wsP~~~   95 (143)
                      +++.+..+++...-.+  ..-|.+++|||..+ .+..++      .++.++|.|+..+++. .. ..+.+|+++|--|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as------l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS------LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeec------cCceEEEEecccceeeeheeccCCceeeeeccCCc
Confidence            5555555554433222  24589999999999 677777      6999999999766554 33 368999999987776


Q ss_pred             eeeecCc
Q psy5876          96 SLLSKEQ  102 (143)
Q Consensus        96 ~l~s~s~  102 (143)
                      ..+=++.
T Consensus       249 h~IYaGl  255 (463)
T KOG1645|consen  249 HVIYAGL  255 (463)
T ss_pred             ceeEEec
Confidence            6655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.86  E-value=2.2  Score=34.46  Aligned_cols=88  Identities=9%  Similarity=-0.017  Sum_probs=51.0

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--CC
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN--SP   83 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~--~~   83 (143)
                      +.++.+++  .+|.+..+|..+++.+-..+.......  ..++.++..++      .|+.+..+|. +|+.+-+..  ..
T Consensus       241 ~~~vy~~~--~~g~l~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~------~~G~l~~~d~~tG~~~W~~~~~~~  310 (377)
T TIGR03300       241 GGQVYAVS--YQGRVAALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTD------ADGVVVALDRRSGSELWKNDELKY  310 (377)
T ss_pred             CCEEEEEE--cCCEEEEEECCCCcEEEeeccCCccCc--eEeCCEEEEEC------CCCeEEEEECCCCcEEEccccccC
Confidence            34555655  479999999999887765542222222  23566666666      4788889998 577665431  11


Q ss_pred             c-EEEEEEeeCCCeeeecCchhhH
Q psy5876          84 T-FCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        84 ~-v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      . +....  ..+..|+.++.++.+
T Consensus       311 ~~~ssp~--i~g~~l~~~~~~G~l  332 (377)
T TIGR03300       311 RQLTAPA--VVGGYLVVGDFEGYL  332 (377)
T ss_pred             CccccCE--EECCEEEEEeCCCEE
Confidence            1 11111  134566666666554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409|consensus

Probab=89.50  E-value=0.51  Score=38.79  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--ceEEe-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      ++|-|..+.|.+|.  .|..+-+||+.-  +.... .+++..|..++.-+--+.+.+++      .|+.|.+|+.+-
T Consensus       203 l~Wd~~~~~LfSg~--~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~------edg~i~~w~mn~  271 (404)
T KOG1409|consen  203 LKWDPGQRLLFSGA--SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG------EDGGIVVWNMNV  271 (404)
T ss_pred             EEEcCCCcEEEecc--ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc------CCCeEEEEeccc
Confidence            36889988999987  689999999773  33222 23446788888888888899888      699999998754

>KOG1832|consensus

Probab=89.42  E-value=0.2  Score=45.93  Aligned_cols=81  Identities=14%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceE-EEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQAT-DVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~-~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~   79 (143)
                      .|||+.+.|.-     ||  .+||+...+.++.|....++ .-.|+|.|..++..+           .|||+ +=++++.
T Consensus      1237 ~FsP~D~LIln-----dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHS 1298 (1516)
T ss_pred             ccCCCcceEee-----Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhc
Confidence            68999888863     55  48999877777776544433 446999999999988           47887 3556666


Q ss_pred             ccCCcEEEEEEeeCCCeeeec
Q psy5876          80 FNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        80 ~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      .+.-.-+.+.|+..|..+-..
T Consensus      1299 VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             CccccceEEEeccCccchhhh
Confidence            554455667777777655443

>KOG3621|consensus

Probab=88.91  E-value=0.71  Score=40.94  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeec---cCceEEEEECCCCCEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAE---HHQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~---~~~v~~i~wsPdG~~lat~s~   57 (143)
                      +.|++..++|.|+  +.|.|.++.++...     .+...+   ...|++++||+||..+.+|.+
T Consensus        83 ~vs~~e~lvAagt--~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~  144 (726)
T KOG3621|consen   83 SVSSVEYLVAAGT--ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS  144 (726)
T ss_pred             EecchhHhhhhhc--CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence            4578877778777  67999999877421     122222   236999999999999999984

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.81  E-value=5.5  Score=33.26  Aligned_cols=93  Identities=11%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             eEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC---
Q psy5876           2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG---   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g---   74 (143)
                      +|.+||+.|+-++. .+|  .+.+-|+.+++..+--+  ........++|+++.++=..      ....++--|++.   
T Consensus        42 ~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~------~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK------NGRSLRRVDLDTLEE  114 (386)
T ss_dssp             -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE------TTTEEEEEETTT--E
T ss_pred             CcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE------CCCeEEEEECCcCcE
Confidence            58999988877663 344  56677788887654322  23334677899999876443      244565566643   


Q ss_pred             cEEEeccCCcEEEEEEee--CCCeeeecC
Q psy5876          75 KIIKRFNSPTFCQLRWRP--RPASLLSKE  101 (143)
Q Consensus        75 ~~l~~~~~~~v~~l~wsP--~~~~l~s~s  101 (143)
                      +.|+..+..-+-...|.+  ++..++-..
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e  143 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIE  143 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEE
Confidence            255666666665577753  355554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.67  E-value=5.7  Score=32.23  Aligned_cols=99  Identities=9%  Similarity=0.045  Sum_probs=53.8

Q ss_pred             CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |.|+|.-..-+.-.. ..|+ ..++|.+..+.+.+...    +---.=.|||||++|...-.+.. ..-+-|-|||...+
T Consensus        73 i~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd-~~rGViGvYd~r~~  150 (366)
T COG3490          73 IAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD-PNRGVIGVYDAREG  150 (366)
T ss_pred             eecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC-CCCceEEEEecccc
Confidence            345555443333222 3454 45677665543333211    11223469999999876542210 01235669999754


Q ss_pred             EEE--eccCC--cEEEEEEeeCCCeeeecC
Q psy5876          76 IIK--RFNSP--TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        76 ~l~--~~~~~--~v~~l~wsP~~~~l~s~s  101 (143)
                      ..+  ++...  .=..+.|.+||..|+-+.
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC
Confidence            333  34333  345789999999888653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.50  E-value=5.5  Score=32.71  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l   77 (143)
                      ++|+||+++....+..-..|.+-|+...+.+.+.+...|..+-=++..++..-|+       |+++.-..+  +|+..
T Consensus       101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-------DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-------DGSLLTVTLDADGKEA  171 (342)
T ss_dssp             EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-------TSCEEEEEETSTSSEE
T ss_pred             EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-------CCceEEEEECCCCCEe
Confidence            6799999999988754468999999999888887767777765444444544444       666665555  35543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.37  E-value=2.7  Score=32.27  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCeEEEEECC--CceEEeeecc-CceEEEEECCCCCEEEEee
Q psy5876          18 TGSLEFVDTG--DFSVMNAAEH-HQATDVEWDPTGRYVMSGV   56 (143)
Q Consensus        18 dg~i~iWd~~--~~~~~~~~~~-~~v~~i~wsPdG~~lat~s   56 (143)
                      .+.|+.|++.  ..+.+.++.. ..|..+.++.-|.||+|=-
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence            4789999987  3456677754 5799999999999999875

>KOG4460|consensus

Probab=88.15  E-value=1.9  Score=37.56  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEE-----EECC----CceE--Ee----------e-eccCceEEEEECCCC---CEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEF-----VDTG----DFSV--MN----------A-AEHHQATDVEWDPTG---RYVMSG   55 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~i-----Wd~~----~~~~--~~----------~-~~~~~v~~i~wsPdG---~~lat~   55 (143)
                      |..||.|..+|.+|  .+|.+.+     |..+    +++.  +.          + ..+-.+..++|+|++   .+|..=
T Consensus       109 vl~s~~GS~VaL~G--~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL  186 (741)
T KOG4460|consen  109 VLLSPTGSHVALIG--IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLL  186 (741)
T ss_pred             EEecCCCceEEEec--CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEE
Confidence            35689999999998  5785533     5533    2321  11          1 123357789999987   455555


Q ss_pred             ecCcceecCCcEEEEeec-CcEEE
Q psy5876          56 VSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus        56 s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +      .|+.|+|||.. -+.++
T Consensus       187 ~------sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  187 T------SDNVIRIYSLSEPTELY  204 (741)
T ss_pred             e------cCcEEEEEecCCcchhh
Confidence            5      49999999984 33443

>KOG4190|consensus

Probab=88.14  E-value=0.91  Score=39.77  Aligned_cols=122  Identities=9%  Similarity=0.007  Sum_probs=70.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      |=.+-++++++    ||.|++||.--++++...+    +..+..+.--|+ .+.|+.+++.    ...+++++|.. +..
T Consensus       792 fL~~lr~i~Sc----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs----aeSTVKl~DaRsce~  863 (1034)
T KOG4190|consen  792 FLADLRSIASC----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS----AESTVKLFDARSCEW  863 (1034)
T ss_pred             eeeccceeeec----cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc----chhhheeeecccccc
Confidence            34456677775    6899999976555554321    233333333344 4555544432    68899999984 443


Q ss_pred             EEec-------cCCcEEEEEEeeCCCeeeecCchhhHH----------hhhh----hhchhccHHhHHHHhhccccc
Q psy5876          77 IKRF-------NSPTFCQLRWRPRPASLLSKEQVDKIK----------KSLK----KYTPAFEAKDRQRMNKASKYA  132 (143)
Q Consensus        77 l~~~-------~~~~v~~l~wsP~~~~l~s~s~d~~i~----------~~~~----~~~~~~e~~~~~~~~~~~~~~  132 (143)
                      ...+       +...+.+++..|.|++|+.+=..+.|.          ...+    ....--...|+..+.+|+++.
T Consensus       864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHs  940 (1034)
T KOG4190|consen  864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHS  940 (1034)
T ss_pred             eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccce
Confidence            3222       134688999999999998764333322          1111    112223345666777777664

>KOG2079|consensus

Probab=87.65  E-value=2.1  Score=39.94  Aligned_cols=54  Identities=7%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--c---cCceEEEEECCCCCEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E---HHQATDVEWDPTGRYVMSGV   56 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~---~~~v~~i~wsPdG~~lat~s   56 (143)
                      ++|+-||++++.|=  .+|.|.+||+.+.+.++.+  +   +.++-.+-|..++..+.|+.
T Consensus       136 vafn~dg~~l~~G~--~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  136 VAFNQDGSLLLAGL--GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD  194 (1206)
T ss_pred             eEecCCCceecccc--CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence            58999999988774  6899999999987765543  1   23566777888888777765

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=87.64  E-value=2.9  Score=36.77  Aligned_cols=67  Identities=10%  Similarity=0.079  Sum_probs=40.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCC-ceEEe-ee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMN-AA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~-~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      -|.|....|++=.. .|-. .+.++.. ...+. -. ..+-|.+.+|.+||+.|+.+-..     --..+|||-.-+
T Consensus       119 VWHPk~~iL~VLT~-~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~qK  188 (671)
T PF15390_consen  119 VWHPKKAILTVLTA-RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQK  188 (671)
T ss_pred             cccCCCceEEEEec-Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCchh
Confidence            48899888887553 2333 3666542 12222 22 23569999999999998877631     123457776433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.94  E-value=3  Score=22.42  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             CCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876          47 PTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus        47 PdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      |||++|.++..     .++.+.++|.. ++.+.+.
T Consensus         1 pd~~~lyv~~~-----~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNS-----GSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeC-----CCCEEEEEECCCCeEEEEE
Confidence            78998877663     57899999984 5555544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916|consensus

Probab=86.59  E-value=1.1  Score=41.33  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECC
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTG   27 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~   27 (143)
                      .||||+.+|.+.  .||.++||.+.
T Consensus       243 lSpDGtv~a~a~--~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  243 LSPDGTVFAWAI--SDGSVGFYQIY  265 (1283)
T ss_pred             eCCCCcEEEEee--cCCccceeeee
Confidence            699999999998  69999999955

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=86.38  E-value=3.5  Score=33.84  Aligned_cols=57  Identities=9%  Similarity=0.123  Sum_probs=40.9

Q ss_pred             eEEEEECCCceEEeeecc-CceEEEEECCCCC-EEEEeecCcceecCCcEEEEee-cCcEEEecc
Q psy5876          20 SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN   81 (143)
Q Consensus        20 ~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~   81 (143)
                      .|-++|+.+++.+.+.+. .++.+|+-|.|.+ +|.+.+.     .++.+.+||. +|+++++..
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~-----~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA-----GDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET-----TTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC-----CCCeEEEEeCcCCcEEeehh
Confidence            455567889999988763 4677999999998 5555442     4788999999 699888653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.02  E-value=3.5  Score=36.55  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECC---------CceEEee-----eccCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTG---------DFSVMNA-----AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~---------~~~~~~~-----~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      ..|||+.+++.||  .+.|.++.-.         +...+.+     +..++|.+..|-+||..++.++        |.+.
T Consensus        82 st~d~qsiLaVGf--~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--------Nqlf  151 (631)
T PF12234_consen   82 STPDGQSILAVGF--PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--------NQLF  151 (631)
T ss_pred             ecCCCCEEEEEEc--CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--------CEEE
Confidence            3699999999996  6888887632         2222322     2236899999999997766544        4666


Q ss_pred             EEee
Q psy5876          69 QWSF   72 (143)
Q Consensus        69 iW~~   72 (143)
                      |++-
T Consensus       152 v~dk  155 (631)
T PF12234_consen  152 VFDK  155 (631)
T ss_pred             EECC
Confidence            7654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG0309|consensus

Probab=85.84  E-value=0.82  Score=41.19  Aligned_cols=97  Identities=9%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             EecCCC-EEEEEecCCCCeEEEEECCCce-EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C-cE
Q psy5876           3 LRMRGT-HIVLAELRDTGSLEFVDTGDFS-VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G-KI   76 (143)
Q Consensus         3 ~SPdG~-~las~~~~~dg~i~iWd~~~~~-~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g-~~   76 (143)
                      |.|+-. .||+++  .|..++.||+.+.. .+....  +...+.+.|+--.-.+...+      ..+-+.+||.. | ..
T Consensus       122 ~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass------hg~~i~vwd~r~gs~p  193 (1081)
T KOG0309|consen  122 FNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS------HGNDIFVWDLRKGSTP  193 (1081)
T ss_pred             cCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc------cCCceEEEeccCCCcc
Confidence            444433 677787  68999999988754 333332  35678899996444444444      37789999994 4 44


Q ss_pred             EEec--cCCcEEEEEEeeC-CCeeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPR-PASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~-~~~l~s~s~d~~i~  107 (143)
                      +...  +...|+.+.|..- -..+.+.+.|++++
T Consensus       194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk  227 (1081)
T KOG0309|consen  194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK  227 (1081)
T ss_pred             eEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence            4433  4556777777433 34566777777776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.84  E-value=2  Score=34.63  Aligned_cols=64  Identities=8%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             cCceEEEEECCCCCEEEEeecCcceecCCcEEEE-eecCcEEEeccC---CcEEEEEEeeCCCeeeecCchhhH
Q psy5876          37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW-SFQGKIIKRFNS---PTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW-~~~g~~l~~~~~---~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +..++++.|+||.+.|.+...      ...-.+| +.+|+++...+-   ...-.+.|--+|+..++.+.+..+
T Consensus        85 ~~nvS~LTynp~~rtLFav~n------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l  152 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTN------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRAL  152 (316)
T ss_pred             cccccceeeCCCcceEEEecC------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceE
Confidence            346999999999999988873      2223243 557998887652   233467777777777777666654

>KOG4649|consensus

Probab=85.84  E-value=6.3  Score=31.64  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=49.1

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce-EEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA-TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v-~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      |++++.|..  .|.+.|-+.++|.++..+.. ..| ....-.|||..|-+++      .|+.++.-|.. -.++++.
T Consensus        63 gdfVV~GCy--~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs------hd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   63 GDFVVLGCY--SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS------HDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             CCEEEEEEc--cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec------CCCcEEEecccccceEEec
Confidence            678888884  78999999999977665532 233 3456789999999999      58888888885 3356654

>KOG2395|consensus

Probab=85.54  E-value=2.2  Score=37.12  Aligned_cols=45  Identities=16%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEe-eec--cCceEEEEECCCCCEEEEee
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMN-AAE--HHQATDVEWDPTGRYVMSGV   56 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~-~~~--~~~v~~i~wsPdG~~lat~s   56 (143)
                      +||+|+  .+|.||+||. .+.... .++  +.+|..|.-+.||++|++.+
T Consensus       443 ~IvvgS--~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  443 YIVVGS--LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eEEEee--cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            889998  5899999996 333222 233  35799999999999988766

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=85.38  E-value=3.1  Score=30.76  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             CCeEEEEECCCceEEeeeccC-ceEEEE--ECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876          18 TGSLEFVDTGDFSVMNAAEHH-QATDVE--WDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF   80 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~~-~v~~i~--wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~   80 (143)
                      +|+|..||..+++.+-+.... ......  -.+++.++.+++      .++.+..||. +|+.+-+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~   62 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRF   62 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEe
Confidence            689999999999887665321 122222  344666777776      4788899997 78876543

...

>KOG3630|consensus

Probab=85.17  E-value=2.4  Score=39.88  Aligned_cols=78  Identities=17%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             CCCeEEEEECCCce-EEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc------CCcEEEE
Q psy5876          17 DTGSLEFVDTGDFS-VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN------SPTFCQL   88 (143)
Q Consensus        17 ~dg~i~iWd~~~~~-~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~------~~~v~~l   88 (143)
                      .|+.|++..+.-.. ...++. ....++++|||-|+.++.|-      ..+++.-|...+......+      ..+|.++
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~------nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v  249 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR------NNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV  249 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec------CCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence            36666666554322 222333 24679999999999999998      5778888888776544432      3478999


Q ss_pred             EEeeCCCeeeec
Q psy5876          89 RWRPRPASLLSK  100 (143)
Q Consensus        89 ~wsP~~~~l~s~  100 (143)
                      .|--.-..|+..
T Consensus       250 ~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  250 TWLSTQEFLVVY  261 (1405)
T ss_pred             EEecceeEEEEe
Confidence            998777777754

>KOG1832|consensus

Probab=83.73  E-value=0.81  Score=42.13  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++||-+-++|++|++  .|.|+++++.+|.-...  .|...++.+.=|-||..+++.+...    ..-..+|+..
T Consensus      1107 ~afs~~~~hL~vG~~--~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S----~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSH--AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS----SPLSALWDAS 1175 (1516)
T ss_pred             EEeecCCceEEeeec--cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----CchHHHhccc
Confidence            478999999999995  79999999998754432  2345799999999999988887521    1133467763

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.71  E-value=20  Score=28.77  Aligned_cols=63  Identities=17%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             EEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec----------------c-CCcEEEEEEeeCCCeeeecCch
Q psy5876          41 TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF----------------N-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        41 ~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~----------------~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      -+|++.++|.++++.-....-.....|.-++.+|+.+...                + ...+-+++++|+|+.|++.-+.
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~  167 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES  167 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence            3788888998888765210000116676777777764432                0 2357899999999977765443

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=83.45  E-value=11  Score=33.07  Aligned_cols=103  Identities=12%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCc-------EEEE-e
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTG-------YWQW-S   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~-------i~iW-~   71 (143)
                      +.|||||+.++..+.......++|-+.. +  ........+....|+|+|+.++.-........|+.       +.+| +
T Consensus        65 ~~~spdg~~~~~~~~~~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (620)
T COG1506          65 LRWSPDGSVLAFVSTDGGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFD  142 (620)
T ss_pred             cccCCCCCEEEEEeccCCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeec
Confidence            3689999999987621111234444332 3  22223467899999999999988321111111222       2233 2


Q ss_pred             ecC-c-----------EEEec--cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          72 FQG-K-----------IIKRF--NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        72 ~~g-~-----------~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      ..| .           .....  ....+...++.+++..++....+..
T Consensus       143 ~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (620)
T COG1506         143 GRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD  190 (620)
T ss_pred             CCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccc
Confidence            233 1           11111  1346777777777787777665544

>PRK13684 Ycf48-like protein; Provisional

Probab=83.29  E-value=22  Score=28.65  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce---EEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS---VMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~---~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      .+.|+|+.++++.   .|.+.+=..+.++   .+...   ....+.++.+.|+++.++++.       ++.+ +...+ |
T Consensus       221 ~~~~~g~~~~vg~---~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-------~G~v-~~S~d~G  289 (334)
T PRK13684        221 GFQPDGNLWMLAR---GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-------NGTL-LVSKDGG  289 (334)
T ss_pred             eEcCCCCEEEEec---CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-------CCeE-EEeCCCC
Confidence            5678888877765   5776543344332   22211   123578899999999777665       3434 45554 3


Q ss_pred             cEEEec----c-CCcEEEEEEeeCCCeeeecC
Q psy5876          75 KIIKRF----N-SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        75 ~~l~~~----~-~~~v~~l~wsP~~~~l~s~s  101 (143)
                      +.-...    . ...++.+.|..++..++.+.
T Consensus       290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             CCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            322211    1 34688899987777776654

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=83.20  E-value=11  Score=34.78  Aligned_cols=80  Identities=10%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             CeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcEEEecc--CCcEEEEEEee
Q psy5876          19 GSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKRFN--SPTFCQLRWRP   92 (143)
Q Consensus        19 g~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~~~--~~~v~~l~wsP   92 (143)
                      |.|.+-|.+...  .+......++.+-+|||||++||=+.+..+......|++-++.  |.-+.++.  ...|..-...+
T Consensus       329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e  408 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE  408 (912)
T ss_pred             CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence            567777766432  2212224578899999999999985543221113357777773  44444443  34455555566


Q ss_pred             CCCeee
Q psy5876          93 RPASLL   98 (143)
Q Consensus        93 ~~~~l~   98 (143)
                      +|...+
T Consensus       409 ~gdt~i  414 (912)
T TIGR02171       409 NGDTVI  414 (912)
T ss_pred             CCCeEE
Confidence            665544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG2100|consensus

Probab=83.16  E-value=6.6  Score=35.53  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=35.7

Q ss_pred             EecCCCEEEEEecC-------CCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeec
Q psy5876           3 LRMRGTHIVLAELR-------DTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         3 ~SPdG~~las~~~~-------~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~   57 (143)
                      .|||.++++.+...       .-+...++++.++....  ..+...+..+.|||.|..++-.-.
T Consensus       104 ~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~  167 (755)
T KOG2100|consen  104 ISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH  167 (755)
T ss_pred             cChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence            57888888776421       12456677777765222  122345689999999988887763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.12  E-value=2.6  Score=24.09  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             CeEecCCC---EEEEEecCCCCeEEEEECCC
Q psy5876           1 MKLRMRGT---HIVLAELRDTGSLEFVDTGD   28 (143)
Q Consensus         1 i~~SPdG~---~las~~~~~dg~i~iWd~~~   28 (143)
                      +.|||+..   +|+-+.  ..|.|.|+|+.+
T Consensus         6 ~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~   34 (43)
T PF10313_consen    6 CKFSPEPGGNDLLAWAE--HQGRVHIVDTRS   34 (43)
T ss_pred             EEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence            47998544   787776  579999999884

It contains a characteristic DLL sequence motif.

>KOG2114|consensus

Probab=83.05  E-value=6.3  Score=36.04  Aligned_cols=100  Identities=8%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCC-EEEEeecCcceecCC-cEEEEeec---C
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGR-YVMSGVSLWKTKADT-GYWQWSFQ---G   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~-~lat~s~~~~~~~D~-~i~iW~~~---g   74 (143)
                      +|+|.|..+|.|+  .+|.|.+.+-. .+.+..+..  ..+...-|.-+++ +|++.+.+..  ... .++||+++   +
T Consensus        30 c~~s~~~~vvigt--~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~--~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGT--ADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ--GNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEee--ccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCC--CCceEEEEecccccCC
Confidence            5899999999998  58988777733 233343321  2344455777774 5666653110  011 58899983   2


Q ss_pred             -c---EEE--e-c----c--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          75 -K---IIK--R-F----N--SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        75 -~---~l~--~-~----~--~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                       +   +++  . .    +  ..++..++.+-+-+.+|.|-.++.|
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V  149 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLV  149 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEE
Confidence             2   331  1 1    1  3468899999999999998777765

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=82.86  E-value=7  Score=34.32  Aligned_cols=57  Identities=12%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEEeccCCcEEEEEEeeCCCeeee
Q psy5876          37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIKRFNSPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~~~~~~~v~~l~wsP~~~~l~s   99 (143)
                      ...+..+.|+|||+.++..+..    .+....+|-+  .|  ........+....|+|+|+.++.
T Consensus        59 ~~~~~~~~~spdg~~~~~~~~~----~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          59 GGGVSELRWSPDGSVLAFVSTD----GGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             CCcccccccCCCCCEEEEEecc----CCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEE
Confidence            3568899999999999988821    1222334433  43  33334567888999999999888

>KOG2377|consensus

Probab=82.61  E-value=5.6  Score=34.31  Aligned_cols=88  Identities=9%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |.||||.+.||+--  .+.+|.|.+..  ..++....    ....|....|+.+ +-+|--+       +.++-+|.+..
T Consensus        72 IkFSlDnkilAVQR--~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-------~~G~e~y~v~p  141 (657)
T KOG2377|consen   72 IKFSLDNKILAVQR--TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-------DQGIEFYQVLP  141 (657)
T ss_pred             EEeccCcceEEEEe--cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-------cCCeEEEEEch
Confidence            57999999999975  58999999962  11222221    1235889999966 6677766       67888998853


Q ss_pred             --cEEEe--ccCCcEEEEEEeeCCCeee
Q psy5876          75 --KIIKR--FNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        75 --~~l~~--~~~~~v~~l~wsP~~~~l~   98 (143)
                        +.++.  .+..+|+-.+|.|+-..++
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEe
Confidence              33332  3466888899999987544

>KOG0882|consensus

Probab=81.89  E-value=5.7  Score=34.00  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=65.3

Q ss_pred             EEEEEecCCCCeEEEEECCC-c-eE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-------EE
Q psy5876           9 HIVLAELRDTGSLEFVDTGD-F-SV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-------II   77 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~-~-~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-------~l   77 (143)
                      .||++.+ .+|.+.|+|-.. + +.  ...+|..+|..+.++|-|.-+++.-      ..+-|.-|+..|.       +.
T Consensus       113 ~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD------~~gmVEyWs~e~~~qfPr~~l~  185 (558)
T KOG0882|consen  113 LIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID------ISGMVEYWSAEGPFQFPRTNLN  185 (558)
T ss_pred             eEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc------ccceeEeecCCCcccCcccccc
Confidence            5666666 589999999542 2 22  2234557899999999999887766      4567888988761       11


Q ss_pred             Eec-----------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF-----------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~-----------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...           ......++.|+|+|..+.+-++|..||
T Consensus       186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR  226 (558)
T KOG0882|consen  186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR  226 (558)
T ss_pred             ccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence            111           133567899999999999988888777

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.54  E-value=7.5  Score=29.67  Aligned_cols=52  Identities=13%  Similarity=0.330  Sum_probs=38.3

Q ss_pred             ECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec----------------cCCcEEEEEEeeCCCeeeecCc
Q psy5876          45 WDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF----------------NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        45 wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~----------------~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...+|.|+++-+      .++.+++||+. ++.+...                ....|..+..+.+|..|++-+.
T Consensus        18 l~~~~~~Ll~iT------~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen   18 LECNGSYLLAIT------SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             EEeCCCEEEEEe------CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            556889988888      58999999995 5544332                1246888899999988887543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499|consensus

Probab=81.39  E-value=15  Score=29.12  Aligned_cols=84  Identities=11%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEE--CCCce-----EEee------eccCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVD--TGDFS-----VMNA------AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd--~~~~~-----~~~~------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      ++|+.|-+.+---.. .+-+|.-||  ..+|.     .+..      +++...-.++..-+|...+++-      ..++|
T Consensus       163 l~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~------ng~~V  235 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF------NGGTV  235 (310)
T ss_pred             ccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe------cCcEE
Confidence            456666664433221 244565587  33432     2221      1222223444566777555544      36678


Q ss_pred             EEEee-cCcEEEec--cCCcEEEEEEe
Q psy5876          68 WQWSF-QGKIIKRF--NSPTFCQLRWR   91 (143)
Q Consensus        68 ~iW~~-~g~~l~~~--~~~~v~~l~ws   91 (143)
                      .-.|. +|++|.+.  +...+.+++|-
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEec
Confidence            88888 69988754  58899999995

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.24  E-value=3  Score=35.68  Aligned_cols=27  Identities=7%  Similarity=0.026  Sum_probs=22.3

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEee
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNA   34 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~   34 (143)
                      +..+|++-+  .|+++|+||+.+++++.+
T Consensus       229 ~~~~l~tl~--~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  229 DDTFLFTLS--RDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             TTTEEEEEE--TTSEEEEEETTTTCEEEE
T ss_pred             CCCEEEEEe--CCCeEEEEECCCCeEEEE
Confidence            567887877  699999999999888554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=81.05  E-value=14  Score=29.29  Aligned_cols=89  Identities=9%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             CCEEEEEecCCCCeEEEEECCCce-EEee--ec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEEec
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFS-VMNA--AE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIKRF   80 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~-~~~~--~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~~~   80 (143)
                      +.+|+++.   .+.|.+|+.+..+ ....  .+ ...++++...  +.+|+.|.      .-+++.++.+  +++.+...
T Consensus        98 ~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD------~~~sv~~~~~~~~~~~l~~v  166 (321)
T PF03178_consen   98 NGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD------AMKSVSLLRYDEENNKLILV  166 (321)
T ss_dssp             TTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE------SSSSEEEEEEETTTE-EEEE
T ss_pred             CCEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE------cccCEEEEEEEccCCEEEEE
Confidence            44566654   5899999977655 4332  22 2346666555  55888887      5677887755  45534322


Q ss_pred             ----cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          81 ----NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        81 ----~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                          ....+.++.+-+++..++.+..++.+
T Consensus       167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             EEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             EecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence                24468889998787767766556544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-06

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 6/26 (23%)

Query: 100 KEQVDKIKKSLKKYTP------AFEA 119
           K+ + K++ SLK Y        A +A
Sbjct: 19  KQALKKLQASLKLYADDSAPALAIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.81
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.8
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.8
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.79
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.79
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.78
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.77
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.76
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.76
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.76
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.76
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.76
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.75
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.75
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.75
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.75
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.74
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.74
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.74
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.74
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.73
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.73
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.73
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.72
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.72
2pm7_B	297	Protein transport protein SEC13, protein transport	99.72
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.72
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.71
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.71
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.71
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.7
2pm7_B	297	Protein transport protein SEC13, protein transport	99.7
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.7
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.7
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.7
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.7
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.69
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.69
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.69
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.68
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.68
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.68
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.68
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.67
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.67
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.67
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.67
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.67
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.67
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.66
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.66
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.66
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.65
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.65
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.65
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.65
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.65
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.65
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.65
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.64
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.64
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.63
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.63
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.63
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.63
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.63
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.62
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.62
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.62
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.62
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.62
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.61
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.6
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.6
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.59
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.59
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.59
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.59
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.58
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.58
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.57
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.57
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.57
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.56
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.56
3jro_A	753	Fusion protein of protein transport protein SEC13	99.55
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.55
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.55
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.55
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.55
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.54
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.52
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.52
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.51
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.51
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.5
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.49
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.48
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.44
3jro_A	753	Fusion protein of protein transport protein SEC13	99.43
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.42
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.42
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.41
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.4
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.39
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.38
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.37
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.37
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.36
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.36
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.36
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.34
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.32
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.32
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.3
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.3
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.3
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.29
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.27
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.25
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.23
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.23
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.22
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.22
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.22
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.22
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.21
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.2
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.2
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.18
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.18
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.17
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.17
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.16
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.14
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.12
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.02
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.98
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.92
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.91
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.89
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.4
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.21
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.89
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.82
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.79
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.76
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.72
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.1
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.9
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.86
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.67
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.38
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.21
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.87
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.85
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.77
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.32
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.7
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.68
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.41
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.22
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.98
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.73
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.71
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.37
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.82
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.63
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	92.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	91.6
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	91.03
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.67
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	90.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.43
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.74
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	89.33
4a2l_A	795	BT_4663, two-component system sensor histidine kin	88.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.34
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	88.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	87.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	86.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	86.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	84.82
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	84.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	83.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	82.8
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	82.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	82.2
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.74
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	81.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	80.48

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.81  E-value=2.1e-19  Score=138.65  Aligned_cols=99  Identities=10%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||||++|++++  .||+|++||+.+++.+..+.  ...+.+++|+|+|++|++|+      .|+.|++||+. |+++
T Consensus        19 ~~fsp~~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           19 IDFHPTEPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS------DDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC------CCCEEEEEECCCCcEE
Confidence            57999999999999  69999999999988777653  35799999999999999999      69999999994 7777


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  |...|.+++|+|+++.|+|++.|++|+
T Consensus        91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  122 (304)
T 2ynn_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (304)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence            654  577899999999999999999999886

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.81  E-value=2.4e-19  Score=140.05  Aligned_cols=99  Identities=13%  Similarity=0.245  Sum_probs=87.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|||++|++++  .||+|++||+.+++++.++.  ...|.+++|+|||++|++++      .|+.++|||+. ++++
T Consensus       212 l~~spd~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s------~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          212 LTFSPDSQLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS------SDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             EEECTTSCEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCEEE
Confidence            47999999999999  69999999999888776653  35799999999999999999      69999999995 7777


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  +...|++++|+|+++.|++++.|++|+
T Consensus       284 ~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~  315 (321)
T 3ow8_A          284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH  315 (321)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            765  467899999999999999999998875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.81  E-value=1.7e-19  Score=148.16  Aligned_cols=98  Identities=15%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |+|||||++||+|+  .||+|+|||. +++++.++  |...|++++|||||++||+++      .|+.|+|||.+|+++.
T Consensus        22 ~a~spdg~~las~~--~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~------~d~~i~vWd~~~~~~~   92 (577)
T 2ymu_A           22 VAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS------DDKTVKLWNRNGQLLQ   92 (577)
T ss_dssp             EEECTTSSCEEEEE--TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTSCEEE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEe------CCCEEEEEECCCCEEE
Confidence            58999999999999  6999999996 45666655  335799999999999999999      6999999999999887


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+|+++.|++++.|+.++
T Consensus        93 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~  123 (577)
T 2ymu_A           93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVK  123 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEcCCCcee
Confidence            65  467899999999999999999998775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.80  E-value=4.4e-19  Score=138.56  Aligned_cols=99  Identities=10%  Similarity=0.201  Sum_probs=87.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||||++||+++  .||.|++||+.+++++..+.  ...|++++|+|||++|++++      .|+.|+|||+. ++++
T Consensus       170 ~~~spdg~~lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s------~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          170 IAYSPDGKYLASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS------DDGYIKIYDVQHANLA  241 (321)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC------TTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc------CCCeEEEEECCCccee
Confidence            47999999999999  69999999999998887764  35799999999999999999      69999999995 6666


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|+++.|++++.|++|+
T Consensus       242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            554  467899999999999999999999886

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.80  E-value=4.3e-19  Score=145.76  Aligned_cols=98  Identities=15%  Similarity=0.328  Sum_probs=85.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|||||++||+++  .|++|++||.. ++++..+  +...|++++|||||++||+++      .|+.|++||.+|+++.
T Consensus       473 ~~~spd~~~las~~--~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~------~dg~v~lwd~~~~~~~  543 (577)
T 2ymu_A          473 VAFSPDGQTIASAS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASAS------DDKTVKLWNRNGQLLQ  543 (577)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSEEEEECTTSCEEE
T ss_pred             EEEcCCCCEEEEEe--CCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEE------CcCEEEEEeCCCCEEE
Confidence            47999999999999  69999999964 5665554  346799999999999999999      6999999999999887


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  |...|.+++|+|||+.|+|++.|++|+
T Consensus       544 ~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~  574 (577)
T 2ymu_A          544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVK  574 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            65  578999999999999999999998774

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.79  E-value=5.4e-19  Score=140.45  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CeEecCCCEEEEEecCCCC----eEEEEECCCceE----Eeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTG----SLEFVDTGDFSV----MNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg----~i~iWd~~~~~~----~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|||||++|++++.  |+    .+++||+.....    ...+  +...|++++|||||++||+|+      .|+.|+||
T Consensus       225 v~fspdg~~l~~~s~--d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs------~D~~V~iw  296 (365)
T 4h5i_A          225 INFIADDTVLIAASL--KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS------NDNSIALV  296 (365)
T ss_dssp             EEEEETTEEEEEEEE--SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE------TTSCEEEE
T ss_pred             EEEcCCCCEEEEEec--CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc------CCCEEEEE
Confidence            479999999999984  44    688899775432    1222  235799999999999999999      69999999


Q ss_pred             ee-cCcEEEec---cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          71 SF-QGKIIKRF---NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        71 ~~-~g~~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |+ +|+++...   |...|++++|+|||++|+|+|.|++||
T Consensus       297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          297 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIH  337 (365)
T ss_dssp             ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            99 57877653   467899999999999999999999988

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.79  E-value=1.2e-18  Score=136.31  Aligned_cols=99  Identities=13%  Similarity=0.156  Sum_probs=86.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++.+..+.+    ..+++++|+|+|++|++|+      .|+.+++||. .++
T Consensus       232 v~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~------~d~~i~vwd~~~~~  303 (340)
T 1got_B          232 ICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY------DDFNCNVWDALKAD  303 (340)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCC
T ss_pred             EEEcCCCCEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC------CCCeEEEEEcccCc
Confidence            47999999999999  699999999998887766533    2699999999999999999      6999999998 466


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+...  |...|.+++|+|+|..|+|++.|++|+
T Consensus       304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~  337 (340)
T 1got_B          304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence            66554  577999999999999999999998874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=136.99  Aligned_cols=99  Identities=15%  Similarity=0.269  Sum_probs=82.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe-----eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-----AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-----~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      ++|||||++||+|+  .||+|+|||+.+++.+.     ..|...|++++|+|||++||+|+      .|+.++||++...
T Consensus        22 l~~sp~g~~las~~--~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s------~D~~v~iw~~~~~   93 (345)
T 3fm0_A           22 LAWNPAGTLLASCG--GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS------FDATTCIWKKNQD   93 (345)
T ss_dssp             EEECTTSSCEEEEE--TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEECCC
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE------CCCcEEEEEccCC
Confidence            58999999999999  69999999988765322     12335799999999999999999      6999999999532


Q ss_pred             ---EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 ---IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ---~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                         ++...  +...|.+++|+|+++.|++++.|++|+
T Consensus        94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~  130 (345)
T 3fm0_A           94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW  130 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEE
Confidence               34443  467899999999999999999999886

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.78  E-value=1.1e-18  Score=138.67  Aligned_cols=99  Identities=14%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++.+..+..         ..+++++|+|+|++|++|+      .|+.+++||
T Consensus       255 v~~~p~~~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~------~dg~i~vwd  326 (380)
T 3iz6_a          255 VKFFPDGQRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY------SNGDCYVWD  326 (380)
T ss_dssp             EEECTTSSEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC------TTSCEEEEE
T ss_pred             EEEecCCCeEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE------CCCCEEEEE
Confidence            57999999999999  699999999999887765421         1388999999999999999      599999999


Q ss_pred             e-cCcEEEec------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          72 F-QGKIIKRF------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        72 ~-~g~~l~~~------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      . .++.+...      |...|.+++|+|+|+.|+|++.|++|+
T Consensus       327 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          327 TLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             TTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             CCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence            8 46665543      456899999999999999999999885

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.77  E-value=4.6e-18  Score=134.24  Aligned_cols=99  Identities=15%  Similarity=0.256  Sum_probs=85.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      ++|+|+|++|++++  .||+|++||+.+.+.+..+..    ..+++++|+|+|++|++++      .|+.|++||+ +|+
T Consensus       246 v~~~p~~~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~------~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          246 VRYYPSGDAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY------NDYTINVWDVLKGS  317 (354)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCS
T ss_pred             EEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE------CCCcEEEEECCCCc
Confidence            47999999999999  699999999998776654432    3689999999999999999      6999999999 577


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+...  |.+.|.+++|+|+|+.|+|++.|++|+
T Consensus       318 ~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~  351 (354)
T 2pbi_B          318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR  351 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence            77654  577999999999999999999998774

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.76  E-value=5.9e-18  Score=130.54  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=85.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++++..+.  ...|++++|+|+|++|++|+      .|+.|++||+. +..+
T Consensus        61 ~~~~~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~~  132 (304)
T 2ynn_A           61 GKFIARKNWIIVGS--DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWAL  132 (304)
T ss_dssp             EEEEGGGTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEGGGTTEE
T ss_pred             EEEeCCCCEEEEEC--CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC------CCCeEEEEECCCCcch
Confidence            47999999999999  69999999999988877653  35799999999999999999      69999999995 5343


Q ss_pred             -Ee--ccCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          78 -KR--FNSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        78 -~~--~~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                       ..  .+...|.+++|+| ++..|++++.|++|+
T Consensus       133 ~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~  166 (304)
T 2ynn_A          133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (304)
T ss_dssp             EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred             hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence             33  3567899999999 678999999999887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.76  E-value=3.5e-18  Score=135.39  Aligned_cols=99  Identities=14%  Similarity=0.229  Sum_probs=79.3

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|+|+ +++||+|+  .||+|++||+.+++++.++.  ...|++++|+||| ++||+|+      .|+.|+|||.. |+
T Consensus       220 ~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs------~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          220 LAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS------EDCSLAVLDSSLSE  291 (344)
T ss_dssp             EEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE------TTSCEEEECTTCCE
T ss_pred             eeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe------CCCeEEEEECCCCc
Confidence            478985 56788888  69999999999988776653  3579999999998 5899999      69999999996 44


Q ss_pred             EEEe-ccCCcEEEEEEeeCCCe-eeecCchhhHH
Q psy5876          76 IIKR-FNSPTFCQLRWRPRPAS-LLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~-~~~~~v~~l~wsP~~~~-l~s~s~d~~i~  107 (143)
                      ++.. .|.+.|++++|+|+++. |+|++.|++|+
T Consensus       292 ~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~  325 (344)
T 4gqb_B          292 LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV  325 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence            4433 35778999999999986 55899999885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.76  E-value=3.7e-18  Score=143.58  Aligned_cols=99  Identities=11%  Similarity=0.233  Sum_probs=83.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      ++|||||++||+|+  .||+|++||+.+++.  +.. .+...|++++|||||++||+++      .|+.+++|++.  ++
T Consensus       454 va~spdg~~lasgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s------~d~~v~~w~~~~~~~  525 (611)
T 1nr0_A          454 VALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD------QSRKVIPYSVANNFE  525 (611)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSCEEEEEGGGTTE
T ss_pred             EEEeCCCCEEEEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc------CCCCEEEEEcCCCCc
Confidence            47999999999999  699999999887543  222 2346799999999999999999      69999999995  44


Q ss_pred             EEEe----ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR----FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++..    .|...|++++|+|+|+.|+|++.|++|+
T Consensus       526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~  561 (611)
T 1nr0_A          526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI  561 (611)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence            4332    1577899999999999999999999886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.76  E-value=8.7e-18  Score=131.12  Aligned_cols=99  Identities=16%  Similarity=0.371  Sum_probs=80.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-------ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|+|+|++||+|+  .||+|++||...       .+++..+  |...|++++|+|+|++||+|+      .|+.++|||
T Consensus        64 v~~sp~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s------~D~~v~iwd  135 (330)
T 2hes_X           64 VAWRPHTSLLAAGS--FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS------RDKSVWIWE  135 (330)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE------TTSCEEEEE
T ss_pred             EEECCCCCEEEEEe--CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe------CCCEEEEEe
Confidence            57999999999999  699999999852       3444444  335799999999999999999      699999999


Q ss_pred             ec-C----cEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          72 FQ-G----KIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        72 ~~-g----~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +. +    +++...  +...|.+++|+|++..|+|++.|++||
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  178 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR  178 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            93 2    234433  467899999999999999999999886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.76  E-value=8.7e-18  Score=128.81  Aligned_cols=99  Identities=15%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++||+++  .||.|++||..+++....+.  ...|.+++|+|||++|++++      .|+.+++||+. ++++
T Consensus        29 ~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           29 VKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS------DDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEee--CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC------CCCEEEEEECCCCcEE
Confidence            47999999999999  69999999998887766553  35799999999999999999      69999999995 7777


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  132 (312)
T 4ery_A          101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  132 (312)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            654  467899999999999999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.76  E-value=3.1e-18  Score=137.61  Aligned_cols=99  Identities=17%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++.+.++.  ...|++++|+|+|++|++|+      .|+.|+|||+. ++++
T Consensus       114 ~~~~p~~~~l~s~s--~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs------~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          114 VIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS------ADMTIKLWDFQGFECI  185 (410)
T ss_dssp             EEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE------TTSCCCEEETTSSCEE
T ss_pred             EEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCcee
Confidence            47999999999999  69999999999887666553  35799999999999999999      69999999996 5677


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|++..|+|++.|++|+
T Consensus       186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            665  467899999999999999999999886

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=131.33  Aligned_cols=99  Identities=16%  Similarity=0.340  Sum_probs=82.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|||+|++||+|+  .||++++||.++.  +++..+.  ...|++++|+|+|++||+++      .|+.+++||+. +.
T Consensus        67 ~~~sp~g~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s------~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           67 VAWSPCGNYLASAS--FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS------RDKSVWVWEVDEED  138 (345)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEECTTS
T ss_pred             EEECCCCCEEEEEE--CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE------CCCeEEEEECCCCC
Confidence            57999999999999  6999999998765  4455543  35799999999999999999      69999999995 32


Q ss_pred             ---EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 ---IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ---~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                         ++...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A          139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK  175 (345)
T ss_dssp             CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred             CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence               23332  467899999999999999999999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.75  E-value=1.2e-17  Score=130.68  Aligned_cols=99  Identities=10%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++++.++.  ...|++++|+|+|++|++++      .|+.+++||+. ++.+
T Consensus       190 ~~~~~~~~~l~sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          190 LSLAPDTRLFVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS------DDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc------CCCcEEEEECCCCcEE
Confidence            47999999999999  69999999999988777663  35799999999999999999      69999999995 5555


Q ss_pred             Eecc----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFN----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ....    ...|.+++|+|+|+.|++++.|+.|+
T Consensus       262 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~  295 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence            5442    23799999999999999999998875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.75  E-value=5.1e-18  Score=134.28  Aligned_cols=99  Identities=9%  Similarity=0.182  Sum_probs=82.9

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|+|++ ++||+|+  .|+.|++||+.+++++.++.  ...|++++|+|+| ++||+|+      .|+.|+|||++ |+
T Consensus       232 v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs------~D~~i~iwd~~~~~  303 (357)
T 4g56_B          232 VTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS------EDCTVAVLDADFSE  303 (357)
T ss_dssp             EEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE------TTSCEEEECTTSCE
T ss_pred             hhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe------CCCEEEEEECCCCc
Confidence            4799985 5788887  68999999999887666553  3579999999998 5799999      69999999996 55


Q ss_pred             EEEec-cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          76 IIKRF-NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~-~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      ++... |.+.|++++|+| ++..|+|++.|++|+
T Consensus       304 ~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          304 VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            55544 577999999999 799999999999886

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.75  E-value=1.1e-17  Score=140.75  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=86.3

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      ++|+|+|+ .|++|+  .|++|++||..+++++.++.  ...|++++|+|||++||+++      .|+.+++||. +|++
T Consensus       153 v~f~p~~~~~l~s~s--~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s------~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          153 VDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG------GDGTIVLYNGVDGTK  224 (611)
T ss_dssp             EEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCE
T ss_pred             EEECCCCCeEEEEEe--CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE------CCCcEEEEECCCCcE
Confidence            47999998 599998  69999999999888777653  35799999999999999999      6999999998 5777


Q ss_pred             EEec---------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF---------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~---------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+         |...|.+++|+|+|+.|+|++.|++|+
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~  264 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK  264 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            6543         456899999999999999999999887

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.75  E-value=1e-17  Score=133.57  Aligned_cols=98  Identities=16%  Similarity=0.290  Sum_probs=83.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--------------------CceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--------------------HQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--------------------~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      ++|||||++||+++   ++++++|++.+++.+..+..                    ..|++++|+|||++||+|+    
T Consensus        70 v~fspdg~~la~g~---~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~----  142 (393)
T 1erj_A           70 VKFSNDGEYLATGC---NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA----  142 (393)
T ss_dssp             EEECTTSSEEEEEC---BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE----
T ss_pred             EEECCCCCEEEEEc---CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc----
Confidence            47999999999986   68999999998877655421                    1389999999999999999    


Q ss_pred             eecCCcEEEEeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 TKADTGYWQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 ~~~D~~i~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .|+.|+|||+. ++.+...  +...|.+++|+|++..|++++.|++|+
T Consensus       143 --~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~  190 (393)
T 1erj_A          143 --EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  190 (393)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             --CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE
Confidence              69999999995 5555544  467899999999999999999999886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.74  E-value=1.6e-17  Score=132.44  Aligned_cols=99  Identities=10%  Similarity=0.214  Sum_probs=86.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||||++||+|+  .||+|++||+.+++.+..+.  ...|++++|+|+|++|++++      .|+.+++||+. |+++
T Consensus       129 v~~s~dg~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          129 VCFSPDGKFLATGA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec------CCCcEEEEECCCCeeE
Confidence            47999999999999  69999999999988776653  35799999999999999999      69999999995 6666


Q ss_pred             Eec-cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          78 KRF-NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~-~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      ... ....+..++|+| +|..|++++.|+.|+
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~  232 (393)
T 1erj_A          201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR  232 (393)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred             EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            554 367899999999 899999999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.74  E-value=2e-17  Score=128.53  Aligned_cols=98  Identities=15%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~   78 (143)
                      ++|||+|++|++++  .||+|++||+.+++.+..+. +..+.+++|+|||++|++++       ++++++|+++.. ++.
T Consensus       202 ~~~sp~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~  272 (319)
T 3frx_A          202 LTASPDGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVD  272 (319)
T ss_dssp             EEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEE
T ss_pred             EEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeee
Confidence            47999999999999  69999999999998887764 45799999999999999988       668999999754 333


Q ss_pred             ec----------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF----------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~----------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..          +...+.+++|+|+|+.|++++.|+.|+
T Consensus       273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~  311 (319)
T 3frx_A          273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR  311 (319)
T ss_dssp             EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence            22          134689999999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.74  E-value=2.7e-17  Score=126.09  Aligned_cols=99  Identities=15%  Similarity=0.263  Sum_probs=87.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++++  .||.|++||+.+++.+..+.  ...|.+++|+|+|++|++++      .|+.+++||+. ++.+
T Consensus        71 ~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           71 VAWSSDSNLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS------FDESVRIWDVKTGKCL  142 (312)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTTCCEE
T ss_pred             EEEcCCCCEEEEEC--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCEEE
Confidence            47999999999999  69999999999988776653  35799999999999999999      69999999995 7777


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A          143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            654  467899999999999999999999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.74  E-value=3.3e-17  Score=127.85  Aligned_cols=99  Identities=12%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC----ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD----FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~----~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|||+|++||+|+  .||+|++||+..    .+++..+  +...|++++|+|+|++|++++      .|+.|++|+.. 
T Consensus       113 v~~sp~g~~las~s--~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~i~iW~~~~  184 (330)
T 2hes_X          113 VAWSNDGYYLATCS--RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS------YDDTVRIWKDYD  184 (330)
T ss_dssp             EEECTTSCEEEEEE--TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEEET
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc------CCCeEEEEECCC
Confidence            57999999999999  699999999842    3455544  335799999999999999999      69999999985 


Q ss_pred             C--cEEEec--cCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          74 G--KIIKRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        74 g--~~l~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      +  +++...  |...|++++|+|+  +..|+|++.|++|+
T Consensus       185 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred             CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence            3  355544  4678999999999  77899999999887

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.74  E-value=3.4e-17  Score=127.17  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=86.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|+|||++|++|+  .||+|++||+.+++.+..+.  ...|.+++|+|+|++|++++      .|+.+++||+.++++.
T Consensus        71 ~~~s~dg~~l~s~s--~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~vwd~~~~~~~  142 (319)
T 3frx_A           71 CTLTADGAYALSAS--WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS------RDKTIKVWTIKGQCLA  142 (319)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE------TTSCEEEEETTSCEEE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeEE
Confidence            47999999999999  69999999999998877653  35799999999999999999      6999999999998877


Q ss_pred             ec--cCCcEEEEEEeeCC------CeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRP------ASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~------~~l~s~s~d~~i~  107 (143)
                      ..  +...|.++.|+|.+      ..|++++.|+.|+
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~  179 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK  179 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence            65  46789999999954      4899999999886

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.73  E-value=1.7e-17  Score=133.34  Aligned_cols=93  Identities=11%  Similarity=0.264  Sum_probs=81.4

Q ss_pred             CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--c
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--N   81 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--~   81 (143)
                      |++|++|+  .||+|++||+.+++++.++.  ...|++++|+|+|++|++|+      .|+.|++||+. ++++...  |
T Consensus       308 g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s------~D~~i~vwd~~~~~~~~~~~~h  379 (410)
T 1vyh_C          308 GPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA------DDKTLRVWDYKNKRCMKTLNAH  379 (410)
T ss_dssp             CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE------TTTEEEEECCTTSCCCEEEECC
T ss_pred             CCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCceEEEEcCC
Confidence            78999999  69999999999998877653  35799999999999999999      69999999995 6666554  5


Q ss_pred             CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          82 SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        82 ~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...|.+++|+|+++.|+|++.|++|+
T Consensus       380 ~~~v~~l~~~~~~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          380 EHFVTSLDFHKTAPYVVTGSVDQTVK  405 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            67899999999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.73  E-value=3.9e-17  Score=127.67  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|+|+|++|++|+  .||+|++||+.+++.+..+  |...|.+++|+|||++|++++      .|+.+++||+.+....
T Consensus        82 ~~~~~~~~~l~s~s--~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~------~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           82 LALSQENCFAISSS--WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG------AEREIKLWNILGECKF  153 (343)
T ss_dssp             EEECSSTTEEEEEE--TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE------TTSCEEEEESSSCEEE
T ss_pred             EEECCCCCEEEEEc--CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc------CCCEEEEEeccCCcee
Confidence            47999999999999  6999999999998877665  335799999999999999999      6999999999876554


Q ss_pred             ec-----cCCcEEEEEEeeCC----------CeeeecCchhhHH
Q psy5876          79 RF-----NSPTFCQLRWRPRP----------ASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~-----~~~~v~~l~wsP~~----------~~l~s~s~d~~i~  107 (143)
                      ..     +...|.+++|+|++          +.+++++.|+.|+
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            32     35679999999997          7899999998875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.73  E-value=6e-18  Score=143.80  Aligned_cols=95  Identities=11%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cC-----ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HH-----QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~-----~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      ++|||||++||+++  .||+|++||.++  ++..++ +.     .+.+++|||||++||+|+      .|++|+|||+++
T Consensus        91 vawSPdG~~LAs~s--~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs------~DGtVkIWd~~~  160 (588)
T 2j04_A           91 CKPSPIDDWMAVLS--NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGN------EDGELQFFSIRK  160 (588)
T ss_dssp             EEECSSSSCEEEEE--TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEE------TTSEEEEEECCC
T ss_pred             EEECCCCCEEEEEe--CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEc------CCCEEEEEECCC
Confidence            58999999999999  699999999665  444333 22     499999999999999999      699999999975


Q ss_pred             cE--------EEec------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KI--------IKRF------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~--------l~~~------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..        +...      |.+.|.+++|+|+|  |++++.|++|+
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence            42        3332      24689999999999  88888898886

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.73  E-value=6e-17  Score=123.91  Aligned_cols=98  Identities=12%  Similarity=0.291  Sum_probs=82.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~   78 (143)
                      ++|+|+|++|++|+  .||+|++||+.+.+.+..+. +..+..++|+|++.+++++.       |+.+++||+.+. ++.
T Consensus       221 ~~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          221 VTVSPDGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT-------GPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             EEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC-------CCEEEEEECCCCeEEE
Confidence            47999999999999  69999999999998887764 45799999999998776555       899999999754 333


Q ss_pred             ec-----------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF-----------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~-----------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..           +...|.+++|+|+|+.|+|++.|+.|+
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             EECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            21           245799999999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.72  E-value=4e-17  Score=127.59  Aligned_cols=96  Identities=16%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             ec-CCCEEEEEecCCCCeEEEEECCCc-------eEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-
Q psy5876           4 RM-RGTHIVLAELRDTGSLEFVDTGDF-------SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-   72 (143)
Q Consensus         4 SP-dG~~las~~~~~dg~i~iWd~~~~-------~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-   72 (143)
                      +| ||++||+|+  .||+|++||+.+.       .....+  |...|++++|+|+|++|++++      .|+.+++||+ 
T Consensus        35 ~~~d~~~l~sgs--~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s------~D~~v~lwd~~  106 (343)
T 2xzm_R           35 ENEDSPVLISGS--RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS------WDKTLRLWDLR  106 (343)
T ss_dssp             TTCCCCEEEEEE--TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE------TTSEEEEEETT
T ss_pred             cCCCCCEEEEEc--CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc------CCCcEEEEECC
Confidence            66 999999999  6999999998642       333333  345799999999999999999      6999999999 


Q ss_pred             cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          73 QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +|+++..+  |...|.+++|+|+++.|++++.|++|+
T Consensus       107 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~  143 (343)
T 2xzm_R          107 TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK  143 (343)
T ss_dssp             SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred             CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence            47777654  577899999999999999999999886

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.72  E-value=3.3e-17  Score=130.09  Aligned_cols=98  Identities=14%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEe-ecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS-FQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~-~~g~~l~   78 (143)
                      ++|||||++||+++-+.|++|+|||+.+++++..+++ ..|.+++|||||++|++++       ++++.+|+ .+|+.+.
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-------~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-------GSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-------SSCEEEEETTTCCEEE
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-------ceeEEEEEeccCccee
Confidence            4799999999876532589999999999988877654 5799999999999999998       44555555 4677664


Q ss_pred             ec----cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          79 RF----NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        79 ~~----~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      ..    +...|.+++|+|+++.+++++.++.
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence            32    3457999999999999999987764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.72  E-value=5.1e-17  Score=124.87  Aligned_cols=99  Identities=15%  Similarity=0.325  Sum_probs=81.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC--ceEEeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSVMNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|||+|++||+|+  .||+|+|||+.+  .+++.++  |...|.+++|+|+  |++||||+      .|++|+|||+. 
T Consensus        15 ~~~s~~g~~las~s--~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s------~D~~v~iWd~~~   86 (297)
T 2pm7_B           15 AVMDYYGKRMATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------YDGKVMIWKEEN   86 (297)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE------TTTEEEEEEBSS
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc------CCCEEEEEEcCC
Confidence            47999999999999  699999999874  3444444  3457999999974  99999999      69999999995 


Q ss_pred             Cc--EEEe--ccCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          74 GK--IIKR--FNSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~--~l~~--~~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      |+  .+..  .+...|.+++|+|+  |+.|++++.|++|+
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            43  3332  35678999999998  89999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.72  E-value=8.3e-17  Score=127.45  Aligned_cols=99  Identities=16%  Similarity=0.217  Sum_probs=83.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      |+|||||++|++|+  .||+|++||+.+++++.++.  ...|++++|+|+|+ +|++++      .|+.|+|||+. ++.
T Consensus       133 v~~spdg~~l~sgs--~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s------~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          133 VSVLSSGTQAVSGS--KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS------EDNRILLWDTRCPKP  204 (344)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTSSSC
T ss_pred             EEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec------cccccccccccccce
Confidence            57999999999999  69999999999999888764  35799999999996 788998      69999999994 776


Q ss_pred             EEecc----CCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876          77 IKRFN----SPTFCQLRWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~~----~~~v~~l~wsP~~-~~l~s~s~d~~i~  107 (143)
                      +....    ...+.+++|+|++ +.|++++.|+.|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            66542    4469999999965 5778999999886

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.2e-16  Score=122.86  Aligned_cols=130  Identities=12%  Similarity=0.106  Sum_probs=96.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcce--------ecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKT--------KADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~--------~~D~~i~iW~   71 (143)
                      ++|+|+|++|++++  .||.|++||+.+++.+..+. ...+..++|+|+|+++++++.....        .....+++||
T Consensus       224 ~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          224 MQFSPDLTYFITSS--RDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             EEECCCCCEEEEec--CCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            47999999999998  69999999999988877664 3579999999999999999842100        0011789999


Q ss_pred             e-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH-hhh--hhhchhccHHhHHHHhhccccc
Q psy5876          72 F-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-KSL--KKYTPAFEAKDRQRMNKASKYA  132 (143)
Q Consensus        72 ~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~--~~~~~~~e~~~~~~~~~~~~~~  132 (143)
                      . .++.+...  +...|.+++|+|+++.|++++.|+.|+ -++  .....+|+.+...++..-++|+
T Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (369)
T 3zwl_B          302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEAKEHMQEA  368 (369)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCHHHHHHHHTTC----
T ss_pred             cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHHHHHHHHHHhhHhhc
Confidence            9 47766654  467899999999999999999999887 222  2334566666666665555543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.71  E-value=2.2e-17  Score=133.05  Aligned_cols=105  Identities=8%  Similarity=0.105  Sum_probs=80.5

Q ss_pred             CeEec---CCCEEEEEecCCCCeEEEEECCCceEEeeec-c----CceEEEEECCCCCEEEEeec------------C--
Q psy5876           1 MKLRM---RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H----HQATDVEWDPTGRYVMSGVS------------L--   58 (143)
Q Consensus         1 i~~SP---dG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~----~~v~~i~wsPdG~~lat~s~------------~--   58 (143)
                      ++|||   +|++||+++  .|++|+|||+.+++++.+++ +    ..+.+++|||||+++++++.            +  
T Consensus       184 l~fs~~~g~~~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             EEEEEEETSTTEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             EEeeccCCCCceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            36778   778899999  69999999999999888764 2    25778899999998865431            1  


Q ss_pred             ---cc----------------------------------eecCCcEEEEee-cCcEEEecc--CCcEE-EEEEeeCCCee
Q psy5876          59 ---WK----------------------------------TKADTGYWQWSF-QGKIIKRFN--SPTFC-QLRWRPRPASL   97 (143)
Q Consensus        59 ---~~----------------------------------~~~D~~i~iW~~-~g~~l~~~~--~~~v~-~l~wsP~~~~l   97 (143)
                         |.                                  ...|++|+|||+ +|++++.+.  .+.+. .++|+|||++|
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence               00                                  014889999999 588888764  44444 68999999999


Q ss_pred             eecCchhhHH
Q psy5876          98 LSKEQVDKIK  107 (143)
Q Consensus        98 ~s~s~d~~i~  107 (143)
                      +|++.|++||
T Consensus       342 aSGS~D~TIk  351 (356)
T 2w18_A          342 LAGQKDGNIF  351 (356)
T ss_dssp             EEECTTSCEE
T ss_pred             EEEECCCcEE
Confidence            9999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.71  E-value=1.1e-16  Score=126.34  Aligned_cols=99  Identities=16%  Similarity=0.297  Sum_probs=86.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECC--CCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      ++|+|++++|++++  .||+|++||+.+++++.++.  ...|.+++|+|  +|++|++|+      .|+.+++||+ +|+
T Consensus       160 ~~~~~~~~~l~t~s--~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs------~Dg~v~~wd~~~~~  231 (354)
T 2pbi_B          160 CSFTNSDMQILTAS--GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG------CDKKAMVWDMRSGQ  231 (354)
T ss_dssp             EEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE------TTSCEEEEETTTCC
T ss_pred             EEEeCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe------CCCeEEEEECCCCc
Confidence            47999999999999  69999999999998877663  35799999988  578999999      6999999999 577


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++..+  +...|.+++|+|++..|++++.|++|+
T Consensus       232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~  265 (354)
T 2pbi_B          232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCR  265 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence            77654  467899999999999999999999887

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.2e-16  Score=122.70  Aligned_cols=95  Identities=13%  Similarity=0.192  Sum_probs=83.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||+|++|++++  .||.|++||+.+++.+..+.  ...|++++|+|+|++|++++      .|+.+++||+. ++++
T Consensus        38 ~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           38 VKYNKEGDLLFSCS--KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS------ADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             EEECTTSCEEEEEE--SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTTEEEEEETTTCCEE
T ss_pred             EEEcCCCCEEEEEe--CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCcEE
Confidence            57999999999999  69999999999988877764  35799999999999999999      69999999995 7776


Q ss_pred             Eec-cCCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRF-NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~-~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ... +...+.+++|+|+++.+++++.+
T Consensus       110 ~~~~~~~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B          110 ATWKSPVPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeecCCCeEEEEEccCCCEEEEecCC
Confidence            655 46789999999999999998877

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.70  E-value=1.7e-16  Score=120.13  Aligned_cols=99  Identities=10%  Similarity=0.229  Sum_probs=82.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----eEEeee--ccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SVMNAA--EHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~~~~~--~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|+|+|++||+++  .||+|++||+.++    +.+..+  +...|++++|+|  ||++|++++      .|+.+++||+
T Consensus        17 ~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~------~dg~v~vwd~   88 (351)
T 3f3f_A           17 VVYDFYGRHVATCS--SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS------YDKTVKLWEE   88 (351)
T ss_dssp             EEECSSSSEEEEEE--TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE------TTSCEEEEEE
T ss_pred             EEEcCCCCEEEEee--CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc------CCCeEEEEec
Confidence            57999999999999  6999999998864    344443  346799999999  699999999      6999999999


Q ss_pred             cC----------cEEEec--cCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          73 QG----------KIIKRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g----------~~l~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      ..          +.+...  +...|.+++|+|+  +..|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  137 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR  137 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred             CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence            63          334443  4678999999999  99999999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.70  E-value=8.8e-17  Score=123.54  Aligned_cols=93  Identities=14%  Similarity=0.197  Sum_probs=74.6

Q ss_pred             CCEEEEEecCCCCeEEEEECCCce----EEeee--ccCceEEEEECCCC---CEEEEeecCcceecCCcEEEEeecCc--
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDFS----VMNAA--EHHQATDVEWDPTG---RYVMSGVSLWKTKADTGYWQWSFQGK--   75 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~~----~~~~~--~~~~v~~i~wsPdG---~~lat~s~~~~~~~D~~i~iW~~~g~--   75 (143)
                      |++||+|+  .||+|++||+.+++    +..++  |...|.+++|+|++   ++||+++      .|+.++|||++..  
T Consensus       170 ~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s------~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          170 SRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS------QDRTCIIWTQDNEQG  241 (297)
T ss_dssp             CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE------TTSCEEEEEESSTTS
T ss_pred             cceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE------CCCcEEEEEeCCCCC
Confidence            68999999  69999999987643    44444  33579999999995   8999999      6999999999631  


Q ss_pred             --E--EE--eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 --I--IK--RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 --~--l~--~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .  +.  ..+...|++++|+|+|+.|++++.|+.|+
T Consensus       242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~  279 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (297)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence              1  11  12356899999999999999999999886

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.70  E-value=1.3e-16  Score=125.93  Aligned_cols=98  Identities=16%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      .|+|+|++||+++  .||.|++||+.+++.+..+  +...|++++|+|+|++|++++      .|+.+++||+. ++.+.
T Consensus       104 ~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          104 TAKLQMRRFILGT--TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS------QDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             EECSSSCEEEEEE--TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCCCE
T ss_pred             EEecCCCEEEEEE--CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe------CCCeEEEEeCCCCcCce
Confidence            5899999999999  6999999999998887764  335799999999999999999      69999999994 66655


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+|++..|++++.|+.|+
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            44  577899999999999999999999876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.70  E-value=1.2e-16  Score=125.11  Aligned_cols=99  Identities=16%  Similarity=0.263  Sum_probs=85.2

Q ss_pred             CeEecCCCEEEEEecCCC---CeEEEEECCCceEEeeec---------------cCceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRDT---GSLEFVDTGDFSVMNAAE---------------HHQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d---g~i~iWd~~~~~~~~~~~---------------~~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      ++|+|+|++|++++  .|   |.|++||+.+++.+..+.               ...|.+++|+|+|++|++++      
T Consensus       239 i~~~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------  310 (397)
T 1sq9_A          239 VKFSPQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------  310 (397)
T ss_dssp             EEECSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------
T ss_pred             EEECCCCCEEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe------
Confidence            47999999999998  58   999999999888776653               35799999999999999999      


Q ss_pred             cCCcEEEEeec-CcEEEecc-----------------------CCcEEEEEEeeCC----------CeeeecCchhhHH
Q psy5876          63 ADTGYWQWSFQ-GKIIKRFN-----------------------SPTFCQLRWRPRP----------ASLLSKEQVDKIK  107 (143)
Q Consensus        63 ~D~~i~iW~~~-g~~l~~~~-----------------------~~~v~~l~wsP~~----------~~l~s~s~d~~i~  107 (143)
                      .|+.+++||+. ++++....                       ...|.+++|+|++          +.|++++.|+.|+
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            69999999994 66665543                       6789999999999          7999999998774

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.70  E-value=1.4e-16  Score=130.85  Aligned_cols=98  Identities=22%  Similarity=0.336  Sum_probs=86.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECC----------CCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDP----------TGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsP----------dG~~lat~s~~~~~~~D~~i   67 (143)
                      ++|||||++|++++  .||.|++||+.+++.+..+.   ...|++++|+|          ||++||+++      .|+.|
T Consensus       494 ~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~------~dg~i  565 (615)
T 1pgu_A          494 ISISPSETYIAAGD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS------LDTNI  565 (615)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE------TTSCE
T ss_pred             EEECCCCCEEEEcC--CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEc------CCCcE
Confidence            47999999999999  69999999999999887753   35799999999          999999999      69999


Q ss_pred             EEEeec-C-cEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          68 WQWSFQ-G-KIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        68 ~iW~~~-g-~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++|++. + +++...  +...|.+++|+|+++ |++++.|+.|+
T Consensus       566 ~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~  608 (615)
T 1pgu_A          566 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK  608 (615)
T ss_dssp             EEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred             EEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence            999995 4 566654  467899999999999 99999998774

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.70  E-value=1.5e-16  Score=122.28  Aligned_cols=99  Identities=10%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             CeEecC----CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMR----GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPd----G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|+|+    |++|++|+  .||.|++||+.+++.+..+.  ...|++++|+| +|++|++++      .|+.|++||+.
T Consensus        75 ~~~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~------~dg~i~iwd~~  146 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAG--SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS------KDHALRLWNIQ  146 (366)
T ss_dssp             EEEEECTTTCCEEEEEEE--TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE------TTSCEEEEETT
T ss_pred             EEeccCCCCCCCEEEEec--CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe------CCCeEEEEEee
Confidence            479999    77999999  69999999999988777653  35799999999 999999999      69999999995


Q ss_pred             -CcEEEec-----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 -GKIIKRF-----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~~~-----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       ++.+...     +...|.+++|+|++..|++++.|+.|+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence             6666654     467899999999999999999998875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.69  E-value=1.8e-16  Score=125.79  Aligned_cols=99  Identities=13%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCc-------eEEeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDF-------SVMNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~-------~~~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|+| +|++|++|+  .||+|++||+.++       +.+..+  +...|++++|+|+| ++|++++      .|+.+++
T Consensus        87 ~~~~p~~~~~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~------~dg~i~i  158 (402)
T 2aq5_A           87 IAWCPHNDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG------CDNVILV  158 (402)
T ss_dssp             EEECTTCTTEEEEEE--TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE------TTSCEEE
T ss_pred             EEeCCCCCCEEEEEe--CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc------CCCEEEE
Confidence            57999 999999999  6999999999876       333333  34679999999999 6999999      6999999


Q ss_pred             Eeec-CcEEEec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSFQ-GKIIKRF----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||+. ++.+...    +...|.+++|+|++..|++++.|+.|+
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  201 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR  201 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence            9995 6666665    467899999999999999999998876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.69  E-value=2.4e-17  Score=128.77  Aligned_cols=99  Identities=13%  Similarity=0.209  Sum_probs=80.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|||||++||+++  .||.|++||+.++  +.+..+.  ...|++++|+|+|++|++++      .|+.+++||+. ++
T Consensus        17 ~~~s~~g~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           17 HAFNSQRTEFVTTT--ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS------QDRNAYVYEKRPDG   88 (377)
T ss_dssp             CEECSSSSEEECCC--SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE------TTSSEEEC------
T ss_pred             EEECCCCCEEEEec--CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe------CCCeEEEEEcCCCC
Confidence            58999999999998  5899999999887  5655553  35799999999999999999      69999999995 44


Q ss_pred             ---EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 ---IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ---~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                         .+...  +...|.+++|+|+++.|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence               23332  467899999999999999999998875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.69  E-value=1.3e-16  Score=135.84  Aligned_cols=99  Identities=10%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|||||++||+++  .||.|++||+.+++.+..+.  ...|++++|+|||++||+++      .|+.+++|++ +|+.+
T Consensus        19 i~~sp~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           19 IDFHPTEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS------DDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe------CCCeEEEEECCCCcEE
Confidence            58999999999998  68999999999988877653  35799999999999999999      5999999999 47776


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|+++.|++++.|+.|+
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            654  467899999999999999999998775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.69  E-value=8.9e-17  Score=124.67  Aligned_cols=99  Identities=15%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee--ccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA--EHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~--~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+|+|++||+|+  .|++|++||+.+++  ++..+  |...|.+++|+|  +|++||||+      .|+.|+|||+. 
T Consensus        19 v~~s~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s------~D~~v~iWd~~~   90 (316)
T 3bg1_A           19 AQMDYYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS------YDRKVIIWREEN   90 (316)
T ss_dssp             EEECGGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE------TTSCEEEECCSS
T ss_pred             eeEcCCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE------CCCEEEEEECCC
Confidence            47999999999999  69999999988764  34443  345799999987  499999999      69999999995 


Q ss_pred             Cc--EEEec--cCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          74 GK--IIKRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~--~l~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      |+  .+...  +...|.+++|+|+  +..|++++.|+.|+
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~  130 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS  130 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE
Confidence            43  44433  4678999999998  78999999999876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=9.1e-17  Score=125.38  Aligned_cols=98  Identities=8%  Similarity=0.023  Sum_probs=81.6

Q ss_pred             CeEec--CCCEEEEEecCCCCeEEEEECCCceEEeee--cc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRM--RGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SP--dG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      ++|+|  +|++|++++  .||+|++||+.+++.+...  ++ ..+++++|+|||++||+|+      .|+.|+|||+. +
T Consensus       131 ~~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~------~dg~i~iwd~~~~  202 (343)
T 3lrv_A          131 MYGHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS------PDGILDVYNLSSP  202 (343)
T ss_dssp             EECCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC------TTSCEEEEESSCT
T ss_pred             EEcCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc------CCCEEEEEECCCC
Confidence            47899  999999999  6999999999988876543  22 3699999999999999999      69999999994 6


Q ss_pred             cEE-Ee--c-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KII-KR--F-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l-~~--~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +.+ ..  . |...|.+++|+|+|..|++++++ .|+
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~  238 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVV  238 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEE
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEE
Confidence            655 33  3 46799999999999999999966 665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.69  E-value=9.5e-17  Score=126.70  Aligned_cols=99  Identities=10%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeec---c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAE---H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~---~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      ++|||||++||+|+  .||+ |++||+.+++++.++.   | ..|++++|+|||++|++++      .|+.++|||+. +
T Consensus       201 ~~~s~~g~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s------~d~~v~iw~~~~~  272 (355)
T 3vu4_A          201 VRLNRKSDMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS------DKWTLHVFEIFND  272 (355)
T ss_dssp             EEECTTSSEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE------TTCEEEEEESSCC
T ss_pred             EEECCCCCEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE------CCCEEEEEEccCC
Confidence            57999999999999  6998 9999999998877663   3 5799999999999999999      69999999984 2


Q ss_pred             cEE--Ee--------------------cc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KII--KR--------------------FN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l--~~--------------------~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  ..                    ..   ......++|+|+|+.|++++.|+.++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~  330 (355)
T 3vu4_A          273 QDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE  330 (355)
T ss_dssp             SCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred             CCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence            210  00                    00   11236689999999999999988764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=120.03  Aligned_cols=95  Identities=16%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--c-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      |+|||++ .||+|.   |++|+|||+.+++++..+  + | ..|++++|+|+|++||+|+      .|+.|++|++. |+
T Consensus        31 l~WS~~~-~lAvg~---D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs------~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL---DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT------SSAEVQLWDVQQQK  100 (318)
T ss_dssp             EEECTTS-EEEEEE---TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTE
T ss_pred             EEECCCC-EEEEEe---CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE------CCCcEEEeecCCce
Confidence            5799997 777765   899999999998876654  2 2 4699999999999999999      69999999995 77


Q ss_pred             EEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++....  ...+.  ++++++..+++++.++.++
T Consensus       101 ~~~~~~~h~~~~~--~~~~~~~~l~s~~~~~~~~  132 (318)
T 4ggc_A          101 RLRNMTSHSARVG--SLSWNSYILSSGSRSGHIH  132 (318)
T ss_dssp             EEEEEECCSSCEE--EEEEETTEEEEEETTSEEE
T ss_pred             eEEEecCccceEE--EeecCCCEEEEEecCCceE
Confidence            776654  34454  5667788999999888765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.2e-16  Score=140.96  Aligned_cols=98  Identities=9%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc---------------------------------------------eEEeee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---------------------------------------------SVMNAA   35 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---------------------------------------------~~~~~~   35 (143)
                      |+|||||++||+|+  .||+|+|||+.++                                             +++..+
T Consensus       494 vafspdg~~LAsgs--~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  571 (902)
T 2oaj_A          494 ISFAAETLELAVSI--ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV  571 (902)
T ss_dssp             EEEETTTTEEEEEE--TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE
T ss_pred             EEecCCCCeEEEEe--cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE
Confidence            58999999999999  6999999998754                                             234443


Q ss_pred             --ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE-Ee--------ccCCcEEEEEEe-----eCC---Ce
Q psy5876          36 --EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII-KR--------FNSPTFCQLRWR-----PRP---AS   96 (143)
Q Consensus        36 --~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l-~~--------~~~~~v~~l~ws-----P~~---~~   96 (143)
                        +...|++++||||| +||+|+      .|+.|+|||+++..+ ++        .|...|++++|+     |||   ++
T Consensus       572 ~~h~~~V~svafSpdG-~lAsgs------~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~  644 (902)
T 2oaj_A          572 HANKGKTSAINNSNIG-FVGIAY------AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL  644 (902)
T ss_dssp             CCCSCSEEEEEECBTS-EEEEEE------TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred             EcCCCcEEEEEecCCc-EEEEEe------CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence              34679999999999 999999      699999999976643 31        235579999999     886   89


Q ss_pred             eeecCchhhHH
Q psy5876          97 LLSKEQVDKIK  107 (143)
Q Consensus        97 l~s~s~d~~i~  107 (143)
                      |++++.|++|+
T Consensus       645 l~sgs~D~tv~  655 (902)
T 2oaj_A          645 MVCGTDMGEVI  655 (902)
T ss_dssp             EEEEETTSEEE
T ss_pred             EEEEecCCcEE
Confidence            99999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.68  E-value=8.2e-17  Score=129.70  Aligned_cols=99  Identities=12%  Similarity=0.258  Sum_probs=80.6

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCce--EEeee--ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFS--VMNAA--EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~--~~~~~--~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |+|+| ++++||+|+  .||+|+|||+.+++  .+..+  |...|++++|+| ||++|+||+      .|++|+|||+++
T Consensus       125 l~~~P~~~~~lasGs--~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s------~D~~v~iwd~~~  196 (435)
T 4e54_B          125 LAWHPTHPSTVAVGS--KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS------MEGTTRLQDFKG  196 (435)
T ss_dssp             EEECSSCTTCEEEEE--TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC------SSSCEEEEETTS
T ss_pred             EEEeCCCCCEEEEEe--CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe------CCCEEEEeeccC
Confidence            58999 577999999  69999999987653  33332  345799999999 789999999      699999999987


Q ss_pred             cEEEec---c--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRF---N--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~---~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+...   +  ...+.+++|+|++..|++++.|+.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~  234 (435)
T 4e54_B          197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI  234 (435)
T ss_dssp             CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred             CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence            765432   1  33578999999999999999999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.4e-16  Score=122.35  Aligned_cols=99  Identities=11%  Similarity=0.286  Sum_probs=81.5

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEEC----CCce------EEeeec-----------c-CceEEEEECCCCCEEEEeec
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDT----GDFS------VMNAAE-----------H-HQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~----~~~~------~~~~~~-----------~-~~v~~i~wsPdG~~lat~s~   57 (143)
                      ++|||+|+ +||+++  .||.|++||+    .+++      ....+.           | ..|++++|+|||++|++++ 
T Consensus        51 ~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  127 (425)
T 1r5m_A           51 STWNPLDESILAYGE--KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-  127 (425)
T ss_dssp             EEECSSCTTEEEEEE--TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE-
T ss_pred             EEECCCCCcEEEEec--CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe-
Confidence            47999999 999999  6899999999    7766      333221           2 3799999999999999999 


Q ss_pred             CcceecCCcEEEEeecCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          58 LWKTKADTGYWQWSFQGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        58 ~~~~~~D~~i~iW~~~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                           .|+.+++|+.+|+.+...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       128 -----~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (425)
T 1r5m_A          128 -----ENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI  174 (425)
T ss_dssp             -----TTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             -----CCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence                 689999999888887765  467899999999999999999998876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.68  E-value=3.6e-16  Score=132.75  Aligned_cols=99  Identities=15%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|||+|++|++|+  .||+|++||+.+++.+..+  |...|.+++|+|||++|+|++      .|+.|+|||..+.+..
T Consensus       436 v~~s~~g~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          436 VVLSSDGQFALSGS--WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS------RDRTIKLWNTLGECKY  507 (694)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSCEEEECTTSCEEE
T ss_pred             EEECCCCCEEEEEe--CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe------CCCEEEEEECCCCcce
Confidence            47999999999999  6999999999998877665  345799999999999999999      6999999999776544


Q ss_pred             ec------cCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876          79 RF------NSPTFCQLRWRPRP--ASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~------~~~~v~~l~wsP~~--~~l~s~s~d~~i~  107 (143)
                      ..      |...|.+++|+|++  ..|++++.|+.|+
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~  544 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK  544 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence            32      34579999999997  5799999999886

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.67  E-value=1.8e-16  Score=122.91  Aligned_cols=93  Identities=11%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             CCEEEEEecCCCCeEEEEECCCc---eEEeee--ccCceEEEEECCCC----CEEEEeecCcceecCCcEEEEeecC---
Q psy5876           7 GTHIVLAELRDTGSLEFVDTGDF---SVMNAA--EHHQATDVEWDPTG----RYVMSGVSLWKTKADTGYWQWSFQG---   74 (143)
Q Consensus         7 G~~las~~~~~dg~i~iWd~~~~---~~~~~~--~~~~v~~i~wsPdG----~~lat~s~~~~~~~D~~i~iW~~~g---   74 (143)
                      |++||+|+  .||+|++||+.+.   +.+..+  |...|.+++|+|++    ++||+++      .|+.|+||++..   
T Consensus       179 ~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s------~D~~v~iw~~~~~~~  250 (316)
T 3bg1_A          179 IKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS------QDGRVFIWTCDDASS  250 (316)
T ss_dssp             CCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE------TTCEEEEEECSSTTC
T ss_pred             cceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc------CCCeEEEEEccCccc
Confidence            57999998  6999999998753   445444  33579999999997    8999999      699999999853   


Q ss_pred             -c---EEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 -K---IIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 -~---~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       .   .+...+...|++++|+|+++.|++++.|++|+
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence             1   12223467899999999999999999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.67  E-value=4.8e-16  Score=120.22  Aligned_cols=99  Identities=13%  Similarity=0.258  Sum_probs=83.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|+|||++||+++  .||.|++||+.+++  .+..+  +...|++++|+|+|++|++++      .|+.+++||+. ++
T Consensus        14 ~~~s~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~   85 (372)
T 1k8k_C           14 HAWNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG------TDRNAYVWTLKGRT   85 (372)
T ss_dssp             EEECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE------TTSCEEEEEEETTE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc------CCCeEEEEECCCCe
Confidence            57999999999998  58999999998876  55554  335799999999999999999      69999999996 44


Q ss_pred             EEEe----ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR----FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ....    .+...|.+++|+|+++.|++++.|+.|+
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  121 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  121 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence            3322    2467899999999999999999998875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.67  E-value=4.2e-16  Score=119.67  Aligned_cols=99  Identities=14%  Similarity=0.296  Sum_probs=82.6

Q ss_pred             CeEecC---CCEEEEEecCCCCeEEEEECCC-ceEE-eee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMR---GTHIVLAELRDTGSLEFVDTGD-FSVM-NAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPd---G~~las~~~~~dg~i~iWd~~~-~~~~-~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|+|+   |++|++|+  .||.|++||+.+ ++.+ ..+  +...|++++|+|+|++|++++      .|+.+++||+.
T Consensus        45 ~~~~~~~~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------~dg~v~iwd~~  116 (368)
T 3mmy_A           45 LSFSPPTLPGNFLIAGS--WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS------CDKTAKMWDLS  116 (368)
T ss_dssp             EEECCTTSSSEEEEEEE--TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSEEEEEETT
T ss_pred             EEEcCCCCCceEEEEEC--CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc------CCCcEEEEEcC
Confidence            579999   69999999  699999999986 4443 333  346899999999999999999      69999999996


Q ss_pred             -CcEEEec-cCCcEEEEEE--eeCCCeeeecCchhhHH
Q psy5876          74 -GKIIKRF-NSPTFCQLRW--RPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~~~-~~~~v~~l~w--sP~~~~l~s~s~d~~i~  107 (143)
                       ++.+... +...|.+++|  +|++..|++++.|+.|+
T Consensus       117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A          117 SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK  154 (368)
T ss_dssp             TTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             CCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence             5444433 5778999999  89999999999999876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.67  E-value=1.7e-16  Score=123.86  Aligned_cols=99  Identities=8%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE---Eeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV---MNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~---~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+|+|++|++++  .||.|++||+++++.   +..+   +...|++++|+|+|++|++++      .|+.+++||+. 
T Consensus       106 ~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~  177 (377)
T 3dwl_C          106 VRWSPNEDKFAVGS--GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC------ADRKAYVLSAYV  177 (377)
T ss_dssp             EECCTTSSCCEEEE--SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE------SSSCEEEEEECC
T ss_pred             EEECCCCCEEEEEe--cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe------CCCEEEEEEEEe
Confidence            47999999999999  699999999987652   3333   335799999999999999999      69999999984 


Q ss_pred             ------------------CcEEEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 ------------------GKIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 ------------------g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                                        ++++... +...|.+++|+|+++.|++++.|+.|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  230 (377)
T 3dwl_C          178 RDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVT  230 (377)
T ss_dssp             SSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC
T ss_pred             cccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEE
Confidence                              4455544 456799999999999999999999876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.67  E-value=6e-17  Score=127.94  Aligned_cols=99  Identities=18%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++++  .||+|++||+.+++.+..+  +...|++++|+|||++|++++      .|+.+++||+. ++.+
T Consensus       145 ~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          145 LKFFPSGEALISSS--QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS------LDGTIRLWECGTGTTI  216 (420)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE------TTSCEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEe--CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc------CCCcEEEeECCCCcee
Confidence            57999999999999  6999999999988766554  346799999999999999999      69999999995 7666


Q ss_pred             Eecc-----CCcEEEEE---------------------EeeCCCeeeecCchhhHH
Q psy5876          78 KRFN-----SPTFCQLR---------------------WRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~-----~~~v~~l~---------------------wsP~~~~l~s~s~d~~i~  107 (143)
                      ....     ...+..++                     |+|+++.|++++.|+.|+
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  272 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT  272 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred             EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence            5542     33455555                     478899999999998875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.4e-16  Score=120.25  Aligned_cols=99  Identities=16%  Similarity=0.327  Sum_probs=83.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|||+|++||+|+  .||.|++||+.  +++.+..+  +...|++++|+|+  |++|++++      .|+.|++||+. 
T Consensus        17 ~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~   88 (379)
T 3jrp_A           17 AVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------YDGKVLIWKEEN   88 (379)
T ss_dssp             EEECSSSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSCEEEEEEET
T ss_pred             EEEcCCCCEEEEEE--CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec------cCCEEEEEEcCC
Confidence            57999999999998  69999999987  55565554  3357999999988  99999999      69999999996 


Q ss_pred             Cc--EEEec--cCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          74 GK--IIKRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~--~l~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      ++  .+...  +...|.+++|+|+  +..|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  128 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  128 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE
Confidence            44  44433  4678999999999  99999999998875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.67  E-value=8e-16  Score=117.02  Aligned_cols=99  Identities=10%  Similarity=0.118  Sum_probs=84.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|+|+|++|++++  .+|.|++||+.+.+...... ...+.+++|+|||++|++++      .|+.+++|++. ++.+.
T Consensus       230 ~~~s~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          230 LGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG------KDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec------CCCcEEEEECCCCeEEE
Confidence            47999999999998  68999999999877654433 35799999999999999999      69999999995 66665


Q ss_pred             ec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .. +...+.+++|+|+++.|++++.|+.|+
T Consensus       302 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  331 (337)
T 1gxr_A          302 QSKESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCeEE
Confidence            43 577899999999999999999988763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.66  E-value=2.3e-16  Score=124.79  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee-----e-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-----A-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-----~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+|+|++|++ +  .||+|+|||+.+++.+..     . +...|++++|+|||++|++++      .|+.|++||+. 
T Consensus       100 ~~~s~d~~~l~~-s--~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------~dg~v~iwd~~~  170 (357)
T 4g56_B          100 VAWVSEKGILVA-S--DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------KDFSVKVWDLSQ  170 (357)
T ss_dssp             EEEETTTEEEEE-E--TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTT
T ss_pred             EEEcCCCCEEEE-E--CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCC
Confidence            579999977654 4  489999999987664321     1 235799999999999999999      69999999995 


Q ss_pred             CcEEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          74 GKIIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      ++++..+  +...|.+++|+|++. .+++++.|+.|+
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~  207 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL  207 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence            6666654  467899999999986 688999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.66  E-value=9.9e-16  Score=116.51  Aligned_cols=99  Identities=10%  Similarity=0.126  Sum_probs=85.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ++|+|+|++|++++  .||.|++||+.+++.+....+ ..+.+++|+|+|++|++++      .|+.+++|++....+..
T Consensus       189 ~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          189 IDISNDGTKLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTSSCEEE
T ss_pred             EEECCCCCEEEEEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc------CCCcEEEEECCCCCeEE
Confidence            47999999999999  699999999999888776643 5799999999999999999      58999999996443333


Q ss_pred             --ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          80 --FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        80 --~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .+...|.+++|+|+++.|++++.|+.|+
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence              3467899999999999999999998775

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.66  E-value=7.1e-16  Score=121.68  Aligned_cols=97  Identities=10%  Similarity=0.191  Sum_probs=78.0

Q ss_pred             eEecCCCEEEEE-ecCCCCeEEEEECCCce----------------EEeee--ccCceEEEEECCCCCEEEEeecCccee
Q psy5876           2 KLRMRGTHIVLA-ELRDTGSLEFVDTGDFS----------------VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         2 ~~SPdG~~las~-~~~~dg~i~iWd~~~~~----------------~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      +++|  +++|.+ +. .+|.|++||+.+++                ++..+  |...|++++|+|||++||+|+      
T Consensus       144 ~~s~--~~la~~sg~-~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s------  214 (355)
T 3vu4_A          144 EFSN--GLLVYSNEF-NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS------  214 (355)
T ss_dssp             EEET--TEEEEEESS-CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE------
T ss_pred             EEEc--cEEEEeCCC-cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe------
Confidence            4666  677775 33 68999999998754                12333  346799999999999999999      


Q ss_pred             cCCc-EEEEeec-CcEEEec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          63 ADTG-YWQWSFQ-GKIIKRF----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        63 ~D~~-i~iW~~~-g~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .|++ ++|||+. |+++..+    +...|.+++|+|+|+.|++++.|++|+
T Consensus       215 ~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~  265 (355)
T 3vu4_A          215 QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLH  265 (355)
T ss_dssp             TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEE
Confidence            6998 9999995 8877654    466899999999999999999999886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.66  E-value=3.3e-16  Score=122.90  Aligned_cols=99  Identities=10%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeee----ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAA----EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~----~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      ++|+|+| ++||+|+  .||.|++||+.+++.....    +...|.+++|+| ++++|++++      .|+.+++||+.+
T Consensus        79 ~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~  150 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS------IRGATTLRDFSG  150 (383)
T ss_dssp             EEECSSCTTEEEEEE--BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE------TTTEEEEEETTS
T ss_pred             EEECCCCCCEEEEEc--CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe------CCCEEEEEECCC
Confidence            4799999 9999999  5999999999876544432    335799999999 789999999      699999999988


Q ss_pred             cEEEecc-----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRFN-----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+....     ...|.+++|+|+++.|++++.|+.|+
T Consensus       151 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  188 (383)
T 3ei3_B          151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL  188 (383)
T ss_dssp             CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence            7665542     35699999999999999999998775

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.66  E-value=8.4e-16  Score=123.08  Aligned_cols=103  Identities=13%  Similarity=0.254  Sum_probs=85.0

Q ss_pred             CeEecCCCEE-EEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHI-VLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~l-as~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|+|++..+ ++++-+.|++|+|||+.+++++.... +..+.++.|+|+++++++++..    .|+.|+|||+ +++++
T Consensus       282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~----~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF----AQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT----TTCCEEEEETTTCCEE
T ss_pred             eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec----CCCEEEEEECCCCcEE
Confidence            4689977644 44331168999999999999887764 4679999999999999987632    4899999999 58888


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..+  |...|.+++|+|+|+.|+|++.|++||
T Consensus       358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            765  577999999999999999999999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.5e-16  Score=124.07  Aligned_cols=98  Identities=8%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE-eee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM-NAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~-~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|+|||++||+|+  .||.|++||+.+++.+ ..+   |...|++++|+|+|++|++++       |+.+++||+. ++
T Consensus       176 ~~~~pdg~~lasg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~  246 (343)
T 3lrv_A          176 GVLHKDSLLLALYS--PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDV  246 (343)
T ss_dssp             EEECTTSCEEEEEC--TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSST
T ss_pred             EEECCCCCEEEEEc--CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCC
Confidence            47999999999998  6999999999987755 333   346899999999999999999       4499999995 55


Q ss_pred             EEEecc-----CCcE--EEEEEeeCCCeeeecCc-hhhHH
Q psy5876          76 IIKRFN-----SPTF--CQLRWRPRPASLLSKEQ-VDKIK  107 (143)
Q Consensus        76 ~l~~~~-----~~~v--~~l~wsP~~~~l~s~s~-d~~i~  107 (143)
                      .+....     ...+  .+++|+|+|+.|++++. |+.|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT  286 (343)
T ss_dssp             TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence            443322     1233  36999999999999776 66654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.5e-17  Score=136.02  Aligned_cols=98  Identities=7%  Similarity=-0.007  Sum_probs=81.6

Q ss_pred             eEecCC-CEEEEEecCCCCeEEEEECCCceEEeee--cc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           2 KLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAA--EH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         2 ~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~--~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      +|+|+| ++||+|+  .||+|+|||+.+++++.++  +.  ..+.+++|+|+|+.||+++      .|++|++||+. +.
T Consensus       317 ~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~------~d~tv~lwd~~~~~  388 (524)
T 2j04_B          317 AYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD------GASSLRAVPSRAAF  388 (524)
T ss_dssp             ECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC------SSSEEEEEETTCTT
T ss_pred             EcCCCCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC------CCCcEEEEECcccc
Confidence            578998 8999999  6999999999876643332  21  2478999999999999998      58899999994 66


Q ss_pred             EEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +++.  .|...|++++|+|+|+.|+|++.|++|+
T Consensus       389 ~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          389 AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             cceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence            5544  3578999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.65  E-value=4.1e-16  Score=123.75  Aligned_cols=98  Identities=10%  Similarity=0.165  Sum_probs=79.9

Q ss_pred             eEec-CCCEEEEEecCCCCeEEEEECC-CceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           2 KLRM-RGTHIVLAELRDTGSLEFVDTG-DFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         2 ~~SP-dG~~las~~~~~dg~i~iWd~~-~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      +|+| ++++|++|+  .||+|++||+. +.+.+..+  |...|++++|+|||++|+||+      .|+.+++||+. |++
T Consensus       212 ~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          212 SINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS------DDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             EECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC------SSSCEEEEETTTTEE
T ss_pred             EeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc------CCCeEEEEECCCCcE
Confidence            4655 899999999  69999999987 33444443  335799999999999999999      69999999995 766


Q ss_pred             EEecc---------CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRFN---------SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~~---------~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +....         ...|.+++|+|+|+.|++++.|+.|+
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  323 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY  323 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred             EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence            65432         12489999999999999999999876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.65  E-value=4.8e-16  Score=125.21  Aligned_cols=99  Identities=12%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeee--cc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |+|+| ||++|++|+  .||+|++||+.+.......  +.  ..+.+++|+|+|++|++|+      .|+.|++||++|+
T Consensus       170 l~f~p~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~------~dg~i~~wd~~~~  241 (435)
T 4e54_B          170 LKFNPLNTNQFYASS--MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD------NVGNVILLNMDGK  241 (435)
T ss_dssp             EEECSSCTTEEEEEC--SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC------SSSBEEEEESSSC
T ss_pred             EEEeCCCCCEEEEEe--CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe------CCCcEeeeccCcc
Confidence            57999 789999999  6999999999876443222  21  2578999999999999999      6999999999998


Q ss_pred             EEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      .+...  +...|.+++|+|+++ .+++++.|+.|+
T Consensus       242 ~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             eeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence            87654  467899999999987 577899999886

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.65  E-value=4.6e-16  Score=123.55  Aligned_cols=98  Identities=10%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-----------EEeee--cc------------CceEEEEECCCC--CEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-----------VMNAA--EH------------HQATDVEWDPTG--RYVM   53 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-----------~~~~~--~~------------~~v~~i~wsPdG--~~la   53 (143)
                      ++|||+|++||+|+  .||.|+|||+.+++           .+..+  |.            ..|++++|+|++  .+|+
T Consensus        34 v~~s~~g~~la~g~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~  111 (447)
T 3dw8_B           34 VEFNHSGELLATGD--KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL  111 (447)
T ss_dssp             EEECSSSSEEEEEE--TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence            57999999999999  69999999988765           34433  22            459999999999  8999


Q ss_pred             EeecCcceecCCcEEEEeecC-cEE------------------------------------------EeccCCcEEEEEE
Q psy5876          54 SGVSLWKTKADTGYWQWSFQG-KII------------------------------------------KRFNSPTFCQLRW   90 (143)
Q Consensus        54 t~s~~~~~~~D~~i~iW~~~g-~~l------------------------------------------~~~~~~~v~~l~w   90 (143)
                      +++      .|+.|++|++.. ...                                          ...+...|.+++|
T Consensus       112 s~s------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          112 LST------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             EEE------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             EeC------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            999      699999999953 221                                          1224678999999


Q ss_pred             eeCCCeeeecCchhhHH
Q psy5876          91 RPRPASLLSKEQVDKIK  107 (143)
Q Consensus        91 sP~~~~l~s~s~d~~i~  107 (143)
                      +|+++.|+++ .|+.|+
T Consensus       186 ~~~~~~l~s~-~d~~i~  201 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRIN  201 (447)
T ss_dssp             CTTSSEEEEE-CSSEEE
T ss_pred             cCCCCEEEEe-CCCeEE
Confidence            9999999998 688776

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.65  E-value=1.9e-15  Score=118.59  Aligned_cols=98  Identities=14%  Similarity=0.297  Sum_probs=83.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec----
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ----   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~----   73 (143)
                      ++|+|+|++|++++  .||.|++||+. ++.+..+  +...|.+++|+|+|+ +|++++      .|+.+++||+.    
T Consensus       169 ~~~~~~~~~l~~~~--~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          169 VDVSVSRQMLATGD--STGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSS------VDATVKLWDLRNIKD  239 (383)
T ss_dssp             EEEETTTTEEEEEE--TTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEE------TTSEEEEEEGGGCCS
T ss_pred             EEECCCCCEEEEEC--CCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEe------CCCEEEEEeCCCCCc
Confidence            47999999999999  69999999995 4555544  346799999999999 899999      69999999995    


Q ss_pred             -CcEEEec-cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          74 -GKIIKRF-NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~~~-~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                       +.++... +...|.+++|+| +|..|++++.|+.|+
T Consensus       240 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          240 KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             TTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             ccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence             4555544 577999999999 999999999998876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=7.9e-16  Score=135.81  Aligned_cols=98  Identities=12%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|||+|++||+|+  .||+|++||..+.+.+...++ ..|.+++|+| |++|++++      .|+.|+|||+. |+++.
T Consensus        23 lafspdg~~lAsgs--~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s------~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           23 AAFDFTQNLLAIAT--VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN------AKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             EEEETTTTEEEEEE--TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE------TTCEEEEEETTTCSEEE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE------CcCeEEEEECCCCcEEE
Confidence            58999999999999  699999999998887766544 5799999999 99999999      69999999995 77776


Q ss_pred             ec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .. +...|.+++|+|+++.|++++.|++|+
T Consensus        94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~  123 (902)
T 2oaj_A           94 TVFVPGKITSIDTDASLDWMLIGLQNGSMI  123 (902)
T ss_dssp             EEECSSCEEEEECCTTCSEEEEEETTSCEE
T ss_pred             EEcCCCCEEEEEECCCCCEEEEEcCCCcEE
Confidence            55 466899999999999999999999886

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.6e-15  Score=118.49  Aligned_cols=98  Identities=6%  Similarity=0.045  Sum_probs=83.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc--
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK--   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~--   75 (143)
                      ++|+|+| +|++++  .||.|++||+.+++.+..+.  ...+.+++|+|+|++|++++      .|+.+++|++. ++  
T Consensus       295 ~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~i~~~~~~~~~  365 (425)
T 1r5m_A          295 ASWVGDD-KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF------MDGQVNVYDLKKLNSK  365 (425)
T ss_dssp             EEEETTT-EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE------TTSCEEEEECHHHHC-
T ss_pred             EEECCCC-EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE------CCCeEEEEECCCCccc
Confidence            4799999 999988  69999999999988777653  35799999999999999999      69999999995 55  


Q ss_pred             ------------------EEEecc--CC--cEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 ------------------IIKRFN--SP--TFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ------------------~l~~~~--~~--~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                                        ++....  ..  .|.+++|+|+++.|++++.|+.|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence                              565553  33  999999999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.65  E-value=1.2e-15  Score=129.57  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=82.2

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCc-----eEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDF-----SVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~-----~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      |+|+|++ ++|++|+  .||+|++||+.+.     .....  .|...|.+++|+|||++|+||+      .|+.|+|||+
T Consensus       388 v~~~~~~~~~l~s~s--~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs------~Dg~v~vwd~  459 (694)
T 3dm0_A          388 IATPIDNADIIVSAS--RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS------WDGELRLWDL  459 (694)
T ss_dssp             EECCTTCCSEEEEEE--TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSEEEEEET
T ss_pred             EEecCCCCCEEEEEe--CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe------CCCcEEEEEC
Confidence            4688875 7899999  6999999998742     22222  3446799999999999999999      6999999999


Q ss_pred             c-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          73 Q-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      . |+++...  |...|.+++|+|++..|+|++.|++|+
T Consensus       460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK  497 (694)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            5 6666654  577899999999999999999999886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.64  E-value=2e-16  Score=129.11  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             CeEecCCCEEE----EEecCCCCeEEEEECCCc--------eE---Eeee--ccCceEEEEECCC-CCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIV----LAELRDTGSLEFVDTGDF--------SV---MNAA--EHHQATDVEWDPT-GRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~la----s~~~~~dg~i~iWd~~~~--------~~---~~~~--~~~~v~~i~wsPd-G~~lat~s~~~~~~   62 (143)
                      ++|||+|++||    +++  .|++|+|||+.++        +.   +..+  |...|.+++|+|+ +++||+++      
T Consensus        98 l~~spdg~~lav~~~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s------  169 (434)
T 2oit_A           98 LALSCDNLTLSACMMSSE--YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL------  169 (434)
T ss_dssp             EEECTTSCEEEEEEEETT--TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE------
T ss_pred             EEEcCCCCEEEEEEeccC--CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE------
Confidence            57999999999    566  5899999997654        11   2222  2357999999998 89999999      


Q ss_pred             cCCcEEEEeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          63 ADTGYWQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        63 ~D~~i~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .|+.+++||+. +..+...  +...|.+++|+|+|+.|++++.|+.|+
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~  217 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVV  217 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEE
Confidence            69999999995 5444332  356899999999999999999998875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.4e-16  Score=122.37  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             CeEecCCC-EEEEE----------ecCCCCeEEEEECCCce---EEeeec-cCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           1 MKLRMRGT-HIVLA----------ELRDTGSLEFVDTGDFS---VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         1 i~~SPdG~-~las~----------~~~~dg~i~iWd~~~~~---~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      ++|||+|+ +|+++          +  .||.|++||+.+++   .+.... ...|++++|+|||++|++++      .|+
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg   89 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFS--TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL------DNG   89 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCC--CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE------SSS
T ss_pred             EeeCCCCCCEEEEEecCcccccccC--CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc------cCC
Confidence            58999998 88888          5  58999999998764   343443 35799999999999999999      699


Q ss_pred             cEEEEeecC-----cEEEec--cCCcEEEEEEeeC-CCeeeecCchhhHH
Q psy5876          66 GYWQWSFQG-----KIIKRF--NSPTFCQLRWRPR-PASLLSKEQVDKIK  107 (143)
Q Consensus        66 ~i~iW~~~g-----~~l~~~--~~~~v~~l~wsP~-~~~l~s~s~d~~i~  107 (143)
                      .+++|++..     +.+...  +...|.+++|+|+ +..|++++.|+.|+
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            999999965     355554  4678999999999 89999999998876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.63  E-value=5.7e-16  Score=131.68  Aligned_cols=94  Identities=10%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-------EEeee------ccCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-------VMNAA------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-------~~~~~------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      ++|||||++||+|+  .||+|+|||+.+++       .+.++      |...|.+++|||||  +|+++      .|+++
T Consensus       135 vafSPDG~~LAsgs--~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass------~D~tV  204 (588)
T 2j04_A          135 FEWNPIESSIVVGN--EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL------SNNSV  204 (588)
T ss_dssp             EEECSSSSCEEEEE--TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE------TTCCE
T ss_pred             EEEcCCCCEEEEEc--CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe------CCCeE
Confidence            58999999999999  69999999998764       23332      12479999999999  77777      59999


Q ss_pred             EEEeecCcEE----Ee---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          68 WQWSFQGKII----KR---FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        68 ~iW~~~g~~l----~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++|+++++.+    ++   .+...|.+++|+  |+.|++++ +++|+
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIk  248 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVH  248 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEE
T ss_pred             EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEE
Confidence            9999976542    12   345689999999  68999998 47776

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.63  E-value=2.2e-15  Score=117.92  Aligned_cols=98  Identities=15%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--------cCceEEEEECCCCCEEEEeecCcceecC---CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--------HHQATDVEWDPTGRYVMSGVSLWKTKAD---TGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--------~~~v~~i~wsPdG~~lat~s~~~~~~~D---~~i~i   69 (143)
                      ++|+|+| +|++++  .||.|++||+.+++.+..+.        ...+.+++|+|+|++|++++      .|   +.+++
T Consensus       192 ~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~------~d~~~g~i~i  262 (397)
T 1sq9_A          192 VDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH------DSNSFGCITL  262 (397)
T ss_dssp             EEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE------EETTEEEEEE
T ss_pred             EEECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe------cCCCCceEEE
Confidence            4799999 999998  68999999999888776653        34799999999999999999      57   89999


Q ss_pred             Eee-cCcEEEec---------------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSF-QGKIIKRF---------------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~-~g~~l~~~---------------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||+ +++.+...               +...|.+++|+|+++.|++++.|+.|+
T Consensus       263 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          263 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            999 47766654               456899999999999999999998776

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.63  E-value=1.6e-15  Score=120.22  Aligned_cols=99  Identities=9%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      ++|+|+| ++|++++  .||+|++||+.+++.+..+    +...|++++|+|||++|++++      .|+.+++||+. +
T Consensus       137 ~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~  208 (402)
T 2aq5_A          137 VAWHPTAQNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC------RDKRVRVIEPRKG  208 (402)
T ss_dssp             EEECSSBTTEEEEEE--TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE------TTSEEEEEETTTT
T ss_pred             EEECcCCCCEEEEEc--CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe------cCCcEEEEeCCCC
Confidence            4799998 6999998  6999999999999887776    335799999999999999999      69999999995 6


Q ss_pred             cEEEec---cCC-cEEEEEEeeCCCeeeec---CchhhHH
Q psy5876          75 KIIKRF---NSP-TFCQLRWRPRPASLLSK---EQVDKIK  107 (143)
Q Consensus        75 ~~l~~~---~~~-~v~~l~wsP~~~~l~s~---s~d~~i~  107 (143)
                      +.+...   +.. .+..+.|+|++..|+++   +.|+.|+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence            666654   223 48999999999999998   7787765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.63  E-value=2.9e-15  Score=113.29  Aligned_cols=64  Identities=13%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             CceEEEEECCCC----CEEEEeecCcceecCCcEEEEeecC---------------------------------------
Q psy5876          38 HQATDVEWDPTG----RYVMSGVSLWKTKADTGYWQWSFQG---------------------------------------   74 (143)
Q Consensus        38 ~~v~~i~wsPdG----~~lat~s~~~~~~~D~~i~iW~~~g---------------------------------------   74 (143)
                      ..|++++|+|+|    ++|++++      .|+.|++||+..                                       
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGC------KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA  288 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEE------TTSCEEEEEEEECC-------------------------------------
T ss_pred             cceeEEEECCCCCCcceEEEEEc------CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence            479999999999    8999999      699999999953                                       


Q ss_pred             --------cEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 --------KIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 --------~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                              +++...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~  331 (351)
T 3f3f_A          289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR  331 (351)
T ss_dssp             --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEE
Confidence                    344433  456899999999999999999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.63  E-value=1.4e-15  Score=116.53  Aligned_cols=98  Identities=9%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce----EEeee-ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEee-c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS----VMNAA-EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~----~~~~~-~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      ++|+|+|++|++++  .||.|++||+.+++    ..... +...|++++|+|+|+ +|++++      .|+.|++|++ .
T Consensus        17 ~~~s~~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~wd~~~   88 (342)
T 1yfq_A           17 IKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT------VQGEILKVDLIG   88 (342)
T ss_dssp             EEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE------TTSCEEEECSSS
T ss_pred             EEEcCCCCEEEEEc--CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc------CCCeEEEEEecc
Confidence            57999999999999  69999999988655    33333 346799999999999 999999      6999999999 7


Q ss_pred             CcEEEe--c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKR--F--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~--~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+..  .  +...|.+++|+| +..|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           89 SPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIE  125 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred             CCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence            554443  3  566899999999 99999999998875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.62  E-value=2.2e-15  Score=120.67  Aligned_cols=95  Identities=18%  Similarity=0.308  Sum_probs=77.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--c-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      |+||++ +.||+|.   |++|+|||..+++++..+  + | ..|++|+|+|||++||+|+      .|+.|+|||+. |+
T Consensus       111 l~wS~~-n~lAvgl---d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs------~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          111 VDWSSG-NVLAVAL---DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT------SSAEVQLWDVQQQK  180 (420)
T ss_dssp             EEECTT-SEEEEEE---TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE
T ss_pred             EEECCC-CEEEEEe---CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE------CCCeEEEEEcCCCc
Confidence            579986 5888775   899999999998876543  2 2 4699999999999999999      69999999995 77


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++...  +...+.+++|  ++..|++++.|+.++
T Consensus       181 ~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~  212 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIH  212 (420)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEEEEeCCCCceEEEee--CCCEEEEEeCCCcee
Confidence            77665  3567777766  567999999998775

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.62  E-value=3.7e-16  Score=124.85  Aligned_cols=98  Identities=13%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEe-----ee--ccCceEEEEECC--------CCCEEEEeecCcceecCCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-----AA--EHHQATDVEWDP--------TGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-----~~--~~~~v~~i~wsP--------dG~~lat~s~~~~~~~D~~   66 (143)
                      .++|++++||+++  .|++|+|||+.+++...     .+  |...|++++|+|        ||++|||||      .|++
T Consensus        96 ~~~~~~~~las~~--~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s------~D~t  167 (393)
T 4gq1_A           96 SSPVYSLFLACVC--QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG------DDCT  167 (393)
T ss_dssp             -CCEEEEEEEEEE--TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE------TTSE
T ss_pred             ecCCCCCEEEEEe--CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE------CCCe
Confidence            3577888999999  69999999998775432     12  346799999998        999999999      6999


Q ss_pred             EEEEeec-CcEEEe--ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          67 YWQWSFQ-GKIIKR--FNSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        67 i~iW~~~-g~~l~~--~~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      ++|||+. +..+..  .+...|.+++|+|++. .|++++.|++|+
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~  212 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR  212 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence            9999994 555443  2477899999999985 799999999887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.3e-16  Score=123.06  Aligned_cols=99  Identities=4%  Similarity=-0.008  Sum_probs=81.5

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeecC-c
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQG-K   75 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~g-~   75 (143)
                      ++|+| +|++|++++  .||.|++||+.+++.+..+.  ...|++++|+|+| ++|++++      .|+.|++|++.. .
T Consensus       268 ~~~s~~~~~~l~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~------~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          268 LDWCHQDEHLLLSSG--RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS------FDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEECSSCSSCEEEEE--SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC------SSSEEEEEESCCCC
T ss_pred             EEeCCCCCCeEEEEe--CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe------cCCcEEEEEccCCC
Confidence            47999 999999999  69999999999988877653  3579999999999 8999999      699999999953 2


Q ss_pred             EEEe-------------------------------------ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKR-------------------------------------FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~-------------------------------------~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ....                                     ++...+..++|+|+|+.|++++.|+.|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~  408 (416)
T 2pm9_A          340 NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS  408 (416)
T ss_dssp             CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred             CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence            1110                                     0234677899999999999999998775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.62  E-value=6e-15  Score=114.04  Aligned_cols=98  Identities=5%  Similarity=-0.077  Sum_probs=81.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC------------------CCceEEeeec--cCceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT------------------GDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~------------------~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      ++|+|+|++|++++  .||.|++||+                  .+++.+..+.  ...+.+++|+|+|++|++++    
T Consensus       148 ~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  221 (372)
T 1k8k_C          148 LDWHPNSVLLAAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS----  221 (372)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE----
T ss_pred             EEEcCCCCEEEEEc--CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe----
Confidence            47999999999999  6999999995                  3566666653  35799999999999999999    


Q ss_pred             eecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 TKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 ~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .|+.+++||+ +++++...  +...|.+++|+|++..|+++ .|+.|+
T Consensus       222 --~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~  268 (372)
T 1k8k_C          222 --HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPV  268 (372)
T ss_dssp             --TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCE
T ss_pred             --CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEE
Confidence              6999999999 57777665  35689999999999988888 666654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.62  E-value=3.3e-15  Score=133.03  Aligned_cols=99  Identities=12%  Similarity=0.154  Sum_probs=86.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|||||++||+|+  .||+|++||+.+++.+.++.  ...|++++|+|||++||+++      .|+.|+|||+ +|+++
T Consensus       621 ~~~s~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d~~v~vwd~~~~~~~  692 (1249)
T 3sfz_A          621 ACFSQDGQRIASCG--ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS------ADKKVKIWDSATGKLV  692 (1249)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEe--CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe------CCCeEEEEECCCCceE
Confidence            47999999999999  69999999999988877653  35799999999999999999      6999999999 57777


Q ss_pred             Eec--cCCcEEEEEEee--CCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRP--RPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP--~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|  ++..+++++.|+.|+
T Consensus       693 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK  726 (1249)
T ss_dssp             EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred             EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence            765  467899999999  556888999998775

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.7e-15  Score=112.47  Aligned_cols=96  Identities=14%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      ++|+|+|+ |++++  .||.|++||+.+++.+..+.  ...+++++|+|+| +|++++      .|+.+++||+ +++++
T Consensus       190 ~~~~~~~~-~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~------~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          190 LAVVDDGH-FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG------EDRTVRIWSKENGSLK  259 (313)
T ss_dssp             EEEEETTE-EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE------TTSEEEEECTTTCCEE
T ss_pred             EEEcCCCe-EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe------cCCEEEEEECCCCcee
Confidence            47999998 88887  59999999999988877653  3579999999999 588888      5999999999 57776


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...|.+++|+|+++ +++++.|+.|+
T Consensus       260 ~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~  290 (313)
T 3odt_A          260 QVITLPAISIWSVDCMSNGD-IIVGSSDNLVR  290 (313)
T ss_dssp             EEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred             EEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence            654  466899999999998 67788888876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.61  E-value=6.4e-15  Score=112.55  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=80.4

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCc-----eEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDF-----SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~-----~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      |+|+|+ |++||+|+  .||+|+|||+.+.     .+...+  +...|++++|+|||++|++++      .|+.+++|+.
T Consensus        44 v~~sp~~~~~l~S~s--~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~------~d~~i~~~~~  115 (340)
T 4aow_A           44 IATTPQFPDMILSAS--RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS------WDGTLRLWDL  115 (340)
T ss_dssp             EEECTTCTTEEEEEE--TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEET
T ss_pred             EEEeCCCCCEEEEEc--CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc------ccccceEEee
Confidence            589998 68999999  6999999997753     233333  346799999999999999999      6999999999


Q ss_pred             cCcE-EEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          73 QGKI-IKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g~~-l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .... ...  .....+..+.++|+++.|++++.|+.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~  153 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK  153 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceeecCCCeEE
Confidence            6443 332  2366888999999999999999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.61  E-value=3.4e-15  Score=127.04  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=84.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C-cE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G-KI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g-~~   76 (143)
                      ++|||+|++||+++  .||.|++||..+++.+..+.  ...|++++|+|+|++|++++      .|+.+++|++. + ..
T Consensus        61 ~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~~  132 (814)
T 3mkq_A           61 GKFIARKNWIIVGS--DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWAL  132 (814)
T ss_dssp             EEEEGGGTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE------TTSEEEEEEGGGTSEE
T ss_pred             EEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc------CCCEEEEEECCCCceE
Confidence            47999999999999  69999999999988777653  35799999999999999999      69999999996 4 33


Q ss_pred             EEec--cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRP-RPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP-~~~~l~s~s~d~~i~  107 (143)
                      ....  +...|.+++|+| ++..|++++.|+.|+
T Consensus       133 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A          133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3333  467899999999 899999999998875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=116.72  Aligned_cols=99  Identities=13%  Similarity=0.298  Sum_probs=80.3

Q ss_pred             CeEec---CCCEEEEEecCCCCeEEEEECCCceEEee-------eccCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876           1 MKLRM---RGTHIVLAELRDTGSLEFVDTGDFSVMNA-------AEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SP---dG~~las~~~~~dg~i~iWd~~~~~~~~~-------~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|+|   +|++|++++  .||.|++||+.+++.+..       .+...|++++|+|+|+ +|++++      .|+.+++
T Consensus       215 ~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i  286 (357)
T 3i2n_A          215 LEFDRKDISMNKLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG------GAGGLHL  286 (357)
T ss_dssp             EEESCSSSSCCEEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE------TTSEEEE
T ss_pred             EEcCCCCCCCCEEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe------CCCcEEE
Confidence            47999   999999998  699999999886543222       2345799999999999 899999      6999999


Q ss_pred             Eeec-C-------------------cEEEec--cCCcEEEEEEeeCCCeee-ecCchhhHH
Q psy5876          70 WSFQ-G-------------------KIIKRF--NSPTFCQLRWRPRPASLL-SKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g-------------------~~l~~~--~~~~v~~l~wsP~~~~l~-s~s~d~~i~  107 (143)
                      ||+. +                   +++...  +...|.+++|+|+++.|+ |++.|+.|+
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~  347 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR  347 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence            9995 2                   234333  467899999999999998 899998775

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.60  E-value=5.9e-15  Score=117.13  Aligned_cols=97  Identities=8%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEee-------e--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNA-------A--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~-------~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|+|+|++|++|.   ||+|++||+.+ .+.+..       +  +...|++++|+|+| ++|++++      .|+.|++
T Consensus       183 ~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~------~dg~i~i  253 (447)
T 3dw8_B          183 ISINSDYETYLSAD---DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS------SKGTIRL  253 (447)
T ss_dssp             EEECTTSSEEEEEC---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE------TTSCEEE
T ss_pred             EEEcCCCCEEEEeC---CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe------CCCeEEE
Confidence            47999999999973   89999999984 444432       1  23569999999999 9999999      6999999


Q ss_pred             Eeec-CcE----EEec--cCC------------cEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSFQ-GKI----IKRF--NSP------------TFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g~~----l~~~--~~~------------~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||+. ++.    +..+  +..            .|.+++|+|+|+.|++++. +.|+
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEE
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEE
Confidence            9995 553    3333  233            8999999999999999988 7765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.7e-15  Score=120.31  Aligned_cols=99  Identities=10%  Similarity=0.088  Sum_probs=81.2

Q ss_pred             CeEecCCCEE-EEEecCCCCeEEEEECC--CceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHI-VLAELRDTGSLEFVDTG--DFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~l-as~~~~~dg~i~iWd~~--~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|||+|++| ++++  .||.|++||+.  +++.+..+    +...|++++|+|||++|++++      .|+.+++|++.
T Consensus       108 ~~~s~d~~~l~~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------~~g~v~~~~~~  179 (450)
T 2vdu_B          108 LRLTSDESRLIACAD--SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD------KFGDVYSIDIN  179 (450)
T ss_dssp             EEECTTSSEEEEEEG--GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSEEEEEETT
T ss_pred             EEEcCCCCEEEEEEC--CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe------CCCcEEEEecC
Confidence            4799999997 7777  58999999988  76655543    235799999999999999999      58999999984


Q ss_pred             -CcEEE----e--ccCCcEEEEEEeeC---CCeeeecCchhhHH
Q psy5876          74 -GKIIK----R--FNSPTFCQLRWRPR---PASLLSKEQVDKIK  107 (143)
Q Consensus        74 -g~~l~----~--~~~~~v~~l~wsP~---~~~l~s~s~d~~i~  107 (143)
                       ++...    .  .+...|.+++|+|+   ++.|++++.|+.|+
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~  223 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK  223 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEE
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEE
Confidence             44322    2  34678999999999   99999999998876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.59  E-value=7.6e-15  Score=112.45  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCc------eEEeee--ccC---------ceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDF------SVMNAA--EHH---------QATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~------~~~~~~--~~~---------~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      ++|+| +|++|++++  .||.|++||.+..      +.+..+  +..         .|++++|+|+|++|++++      
T Consensus       199 i~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------  270 (342)
T 1yfq_A          199 VALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG------  270 (342)
T ss_dssp             EEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE------
T ss_pred             EEECCCCCCEEEEEe--cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec------
Confidence            47999 999999999  6999999998765      433333  212         899999999999999999      


Q ss_pred             cCCcEEEEeec-CcEEEec--c-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          63 ADTGYWQWSFQ-GKIIKRF--N-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        63 ~D~~i~iW~~~-g~~l~~~--~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .|+.|++||+. ++++...  + ...|.+++  |+++.|++++.|+.+
T Consensus       271 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~  316 (342)
T 1yfq_A          271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF  316 (342)
T ss_dssp             TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred             CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence            69999999995 7777665  3 56899999  999999999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=7.3e-15  Score=113.35  Aligned_cols=94  Identities=14%  Similarity=0.216  Sum_probs=75.7

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCce----EEeee--ccCceEEEEECCC---CCEEEEeecCcceecCCcEEEEeecCc-
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFS----VMNAA--EHHQATDVEWDPT---GRYVMSGVSLWKTKADTGYWQWSFQGK-   75 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~----~~~~~--~~~~v~~i~wsPd---G~~lat~s~~~~~~~D~~i~iW~~~g~-   75 (143)
                      +|++|++++  .||.|++||+.+++    .+..+  +...|++++|+|+   |++|++++      .|+.+++||+... 
T Consensus       171 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~------~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          171 ESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS------QDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE------TTSCEEEEEESSTT
T ss_pred             CCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe------CCCEEEEEeCCCCC
Confidence            799999999  69999999986542    33333  3357999999999   89999999      6999999999632 


Q ss_pred             -----EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 -----IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 -----~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                           .+...  +...|.+++|+|+|+.|++++.|+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence                 22222  356899999999999999999998775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.59  E-value=5.9e-15  Score=113.25  Aligned_cols=98  Identities=11%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECC---CCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDP---TGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsP---dG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      +|+|+|++|++++  .||.|++||+.+++...... ...+.+++|+|   +|++|++++      .|+.+++||+. ++.
T Consensus       175 ~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          175 AYNQEERVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS------LEGKFHVFDMRTQHP  246 (357)
T ss_dssp             CCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE------STTEEEEEEEEEEET
T ss_pred             ccCCCCCEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC------CCCeEEEEeCcCCCc
Confidence            4889999999998  68999999999988765543 46799999999   999999999      69999999995 332


Q ss_pred             EEe-------ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          77 IKR-------FNSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~-------~~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      +..       .+...|.+++|+|+++ .|++++.|+.|+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  285 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH  285 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence            211       3567899999999999 899999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.4e-15  Score=117.84  Aligned_cols=97  Identities=8%  Similarity=0.148  Sum_probs=82.0

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|++|++++  .||.|++||+.+++++..+.    ...|++++|+|+|++|++|+      .|+.+++||+. ++++
T Consensus       178 ~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~  249 (437)
T 3gre_A          178 VNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT------TRGIIDIWDIRFNVLI  249 (437)
T ss_dssp             ECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE------TTSCEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc------CCCeEEEEEcCCccEE
Confidence            678999999999  69999999999988776653    35799999999999999999      69999999995 7777


Q ss_pred             Eec---cCCcEEEEEEee----CCCeeeecCchhhHH
Q psy5876          78 KRF---NSPTFCQLRWRP----RPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~---~~~~v~~l~wsP----~~~~l~s~s~d~~i~  107 (143)
                      ..+   +...|.+++|+|    ++..|++++.|+.|+
T Consensus       250 ~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~  286 (437)
T 3gre_A          250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT  286 (437)
T ss_dssp             EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred             EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence            654   245799996654    678999999999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.58  E-value=2.3e-14  Score=117.56  Aligned_cols=94  Identities=14%  Similarity=0.160  Sum_probs=79.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----eEEeeec--cCc-eEEEEECC--CCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SVMNAAE--HHQ-ATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~~~~~~--~~~-v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|||||++||+++   ++.|++||+.++    +.+..+.  ... |++++|+|  ||++||+++      .|+.+++|+
T Consensus        24 ~~~spdg~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~------~dg~v~vw~   94 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC---GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD------ESGKVIVWG   94 (615)
T ss_dssp             CEEETTTTEEEEEE---TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE------TTSEEEEEE
T ss_pred             EEECCCCCEEEEec---CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec------CCCEEEEEe
Confidence            58999999999998   789999999987    6655543  357 99999999  999999999      699999999


Q ss_pred             ec-C--------cEEEec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          72 FQ-G--------KIIKRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        72 ~~-g--------~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +. |        +++...  +...|.+++|+|+++.|++++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  137 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  137 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence            93 4        444443  46789999999999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=111.87  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             CeEecCCCE-EEEEecCCCCeEEEEECCCce-EEee-----------------eccCceEEEEECCCCCEEEEeecCcce
Q psy5876           1 MKLRMRGTH-IVLAELRDTGSLEFVDTGDFS-VMNA-----------------AEHHQATDVEWDPTGRYVMSGVSLWKT   61 (143)
Q Consensus         1 i~~SPdG~~-las~~~~~dg~i~iWd~~~~~-~~~~-----------------~~~~~v~~i~wsPdG~~lat~s~~~~~   61 (143)
                      ++|+|+|++ |++++  .||.|++||+.+.. .+..                 .+...|.+++|+|+|++|++++.    
T Consensus       192 ~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----  265 (408)
T 4a11_B          192 VSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT----  265 (408)
T ss_dssp             EEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET----
T ss_pred             EEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC----
Confidence            479999995 78888  69999999987643 1111                 12357999999999999999994    


Q ss_pred             ecCCcEEEEeec------------------------------------------------CcEEEec--cCCcEEEEEEe
Q psy5876          62 KADTGYWQWSFQ------------------------------------------------GKIIKRF--NSPTFCQLRWR   91 (143)
Q Consensus        62 ~~D~~i~iW~~~------------------------------------------------g~~l~~~--~~~~v~~l~ws   91 (143)
                        |+.+++||+.                                                ++++...  +...|.+++|+
T Consensus       266 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s  343 (408)
T 4a11_B          266 --DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ  343 (408)
T ss_dssp             --TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred             --CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc
Confidence              5555555542                                                3444443  35689999999


Q ss_pred             eCCCeeeecCchhhHH
Q psy5876          92 PRPASLLSKEQVDKIK  107 (143)
Q Consensus        92 P~~~~l~s~s~d~~i~  107 (143)
                      |+++.|++++.|+.|+
T Consensus       344 ~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          344 SNFQELYSGSRDCNIL  359 (408)
T ss_dssp             TTTTEEEEEETTSCEE
T ss_pred             CCCCEEEEECCCCeEE
Confidence            9999999999999887

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.57  E-value=6.5e-15  Score=113.17  Aligned_cols=97  Identities=14%  Similarity=0.238  Sum_probs=81.4

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+| +|++|++++  .||.|++||+.+++.+..+     +...|.+++|+|+|++|++++      .|+.+++||+. 
T Consensus       121 ~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~  192 (366)
T 3k26_A          121 LKFHPRDPNLLLSVS--KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG------MDHSLKLWRINS  192 (366)
T ss_dssp             EEECSSCTTEEEEEE--TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE------TTSCEEEEESCS
T ss_pred             EEECCCCCCEEEEEe--CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec------CCCCEEEEECCC
Confidence            47999 999999999  6999999999998877765     235799999999999999999      69999999996 


Q ss_pred             CcEEEec------------------------------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKRF------------------------------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~------------------------------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++.+...                              +...|.+++|+  +..|++++.|+.|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~  254 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIV  254 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEE
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEE
Confidence            4332211                              56689999999  77999999998876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.57  E-value=5e-15  Score=118.25  Aligned_cols=99  Identities=11%  Similarity=0.132  Sum_probs=77.0

Q ss_pred             CeEec--------CCCEEEEEecCCCCeEEEEECCCceEEee-e-ccCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876           1 MKLRM--------RGTHIVLAELRDTGSLEFVDTGDFSVMNA-A-EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SP--------dG~~las~~~~~dg~i~iWd~~~~~~~~~-~-~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i   69 (143)
                      |+|+|        ||++||+++  .|++|+|||+.++..+.. . ++..+.+++|+|+|. +|++++      .|+.|++
T Consensus       142 v~~~p~~~~~~~~d~~~las~s--~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------~d~~v~~  213 (393)
T 4gq1_A          142 IDIADVYSADNRLAEQVIASVG--DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE------RNGNIRI  213 (393)
T ss_dssp             EEEEEEECTTCSEEEEEEEEEE--TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE------TTSEEEE
T ss_pred             EEEccccccccCCCCCEEEEEE--CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC------CCCEEEE
Confidence            47888        999999999  699999999877655433 2 456899999999985 799998      6999999


Q ss_pred             Eeec-CcEEEe---------------------------ccCCcEEEEEEe-eCCCeeeecCchhhHH
Q psy5876          70 WSFQ-GKIIKR---------------------------FNSPTFCQLRWR-PRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g~~l~~---------------------------~~~~~v~~l~ws-P~~~~l~s~s~d~~i~  107 (143)
                      ||+. ++....                           .+...+..+.|. |+|..|++++.|+.++
T Consensus       214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~  280 (393)
T 4gq1_A          214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWL  280 (393)
T ss_dssp             EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEE
T ss_pred             EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEE
Confidence            9984 433211                           123457788886 8999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.56  E-value=2.1e-14  Score=114.06  Aligned_cols=101  Identities=14%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEee-cCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSF-QGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~-~g~~   76 (143)
                      ++|+|+|++|++++  .||.|++||+.+++.+..+.  ...|.+++|+|+|. ++++++..    .|+.+++||+ +++.
T Consensus       223 ~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs----~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          223 LAWRSDGLQLASGG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT----MDKQIHFWNAATGAR  296 (401)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT----TTCEEEEEETTTCCE
T ss_pred             EEEcCCCCEEEEEe--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC----CCCEEEEEECCCCCE
Confidence            47999999999999  68999999999887776653  35799999999886 45554311    4899999999 4777


Q ss_pred             EEecc-CCcEEEEEEeeCCCeeee--cCchhhHH
Q psy5876          77 IKRFN-SPTFCQLRWRPRPASLLS--KEQVDKIK  107 (143)
Q Consensus        77 l~~~~-~~~v~~l~wsP~~~~l~s--~s~d~~i~  107 (143)
                      +.... ...|.+++|+|+++.|++  ++.|+.|+
T Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence            76653 678999999999999999  55788765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.5e-14  Score=116.77  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe----e--eccCceEEEEECCC---CCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN----A--AEHHQATDVEWDPT---GRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~----~--~~~~~v~~i~wsPd---G~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|+|+|++|++++  .+|.|.+|++.+++...    .  .+...|++++|+||   |++|++++      .|+.|++||
T Consensus       155 ~~~sp~~~~l~~~~--~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~------~d~~i~vwd  226 (450)
T 2vdu_B          155 ISIAEDDTTVIIAD--KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD------RDEHIKISH  226 (450)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE------TTSCEEEEE
T ss_pred             EEEcCCCCEEEEEe--CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc------CCCcEEEEE
Confidence            57999999999998  58999999988765432    2  23467999999999   99999999      699999999


Q ss_pred             ec-CcEEEe-c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          72 FQ-GKIIKR-F--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        72 ~~-g~~l~~-~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +. ++++.. .  +...|.+++|+ ++..|++++.|+.|+
T Consensus       227 ~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          227 YPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             ESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             CCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence            95 776655 2  46789999999 999999999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.56  E-value=3.1e-14  Score=126.76  Aligned_cols=99  Identities=10%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|||||++||+++  .||+|++||+.+++.+.++.  ...|.+++|+|  ++.++++++      .|+.+++||+. |+
T Consensus       663 ~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~------~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          663 CAFSSDDSYIATCS--ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS------NDFFLKLWDLNQKE  734 (1249)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEE------TTSCEEEEETTSSS
T ss_pred             EEEecCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEe------CCCeEEEEECCCcc
Confidence            47999999999999  69999999999998877653  35799999999  556899999      69999999995 77


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~  768 (1249)
T 3sfz_A          735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR  768 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred             hhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence            77654  467899999999999999999999876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.56  E-value=4.3e-14  Score=106.99  Aligned_cols=102  Identities=13%  Similarity=0.249  Sum_probs=81.2

Q ss_pred             eEecCCCEEEE-EecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           2 KLRMRGTHIVL-AELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las-~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      .|+|++..++. ++-+.+++|++||.......... +...+..++|+|+++++++++..    .|+.|+|||+ +|+++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~----~d~~i~iwd~~~~~~~~  278 (318)
T 4ggc_A          203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF----AQNQLVIWKYPTMAKVA  278 (318)
T ss_dssp             EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT----TTCCEEEEETTTCCEEE
T ss_pred             EecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc----CCCEEEEEECCCCcEEE
Confidence            57787775542 21116899999999887765554 34679999999999999887632    5899999999 588887


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .+  |.+.|.+++|+|+|+.|+|++.|++||
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVASAAADETLR  309 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            65  477999999999999999999999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.7e-14  Score=124.47  Aligned_cols=99  Identities=16%  Similarity=0.326  Sum_probs=83.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeeec--cCceEEEEECCC--CCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAAE--HHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~~--~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|||+|++|++|+  .||+|++||+.  +++.+..+.  ...|++++|+|+  |++|++|+      .|+.|++||+. 
T Consensus        15 l~~s~dg~~latg~--~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s------~Dg~I~vwd~~~   86 (753)
T 3jro_A           15 AVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------YDGKVLIWKEEN   86 (753)
T ss_dssp             ECCCSSSCCEEEEE--TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE------TTSCEEEEEEET
T ss_pred             EEECCCCCeEEEEE--CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe------CCCeEEEEECCC
Confidence            47999999999999  69999999987  555555543  357999999998  99999999      69999999996 


Q ss_pred             Cc--EEEec--cCCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876          74 GK--IIKRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~--~l~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~  107 (143)
                      |+  .+...  +...|.+++|+|+  +..+++++.|+.|+
T Consensus        87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            43  33333  4678999999999  99999999999876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.55  E-value=2.6e-14  Score=115.00  Aligned_cols=99  Identities=10%  Similarity=0.279  Sum_probs=80.0

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCC-ceEEeee--ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeecC-
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGD-FSVMNAA--EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQG-   74 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~-~~~~~~~--~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~g-   74 (143)
                      ++|+|+|+ +|++|+  .||+|++||+.+ .+.+..+  +...|++++|+|+|+ +|++++      .|+.|+|||+.. 
T Consensus       283 i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~~  354 (430)
T 2xyi_A          283 LSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSKI  354 (430)
T ss_dssp             EEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGGT
T ss_pred             EEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCCC
Confidence            57999998 577888  699999999886 3344443  346899999999996 588888      699999999954 


Q ss_pred             --------------cEEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          75 --------------KIIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        75 --------------~~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                                    .++...  +...|.+++|+|+++ .|++++.|+.|+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ  404 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence                          555544  356899999999999 899999998776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.7e-14  Score=114.88  Aligned_cols=99  Identities=5%  Similarity=0.004  Sum_probs=79.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC---CceEEeeec--------------cCceEEEE--ECCCCCEEEEeecCcce
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG---DFSVMNAAE--------------HHQATDVE--WDPTGRYVMSGVSLWKT   61 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~---~~~~~~~~~--------------~~~v~~i~--wsPdG~~lat~s~~~~~   61 (143)
                      ++|+|+|++|++++  .||+|++||++   +++.+....              ...+.++.  |+|||++|++++     
T Consensus       117 ~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----  189 (437)
T 3gre_A          117 ITMIPNFDAFAVSS--KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----  189 (437)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----
T ss_pred             EEEeCCCCEEEEEe--CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----
Confidence            57999999999999  69999999985   443332221              22455555  778999999999     


Q ss_pred             ecCCcEEEEee-cCcEEEec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          62 KADTGYWQWSF-QGKIIKRF----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        62 ~~D~~i~iW~~-~g~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       .|+.|++||+ +++++...    +...|.+++|+|++..|++++.|+.|+
T Consensus       190 -~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~  239 (437)
T 3gre_A          190 -NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIID  239 (437)
T ss_dssp             -TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             -CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence             6999999999 47776654    457899999999999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.55  E-value=4.1e-14  Score=112.40  Aligned_cols=97  Identities=15%  Similarity=0.314  Sum_probs=82.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~   76 (143)
                      ++|+|+|++|++|+  .||.|++||+.+++.+..+.  ...|.+++|  ++++|++++      .|+.+++||+.  +..
T Consensus       140 v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          140 VKWSHDGSFLSVGL--GNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGS------RSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEE------TTSEEEEEETTSSSCE
T ss_pred             EEECCCCCEEEEEC--CCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEc------CCCCEEEEecccCcce
Confidence            57999999999998  69999999999888777653  357999999  567999999      69999999996  444


Q ss_pred             EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +...  +...|.+++|+|+++.|++++.|+.|+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            4443  577899999999999999999999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.55  E-value=2.2e-14  Score=109.99  Aligned_cols=89  Identities=8%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             EEEEecCCCCeEEEEECCCc---eEEeee--ccC------------ceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876          10 IVLAELRDTGSLEFVDTGDF---SVMNAA--EHH------------QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus        10 las~~~~~dg~i~iWd~~~~---~~~~~~--~~~------------~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      +++++  .||.|++||....   +.+..+  +..            .|++++|+|||++|++++      .|+.|++||+
T Consensus       231 ~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~------~dg~i~iwd~  302 (368)
T 3mmy_A          231 FALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG------SDGRFSFWDK  302 (368)
T ss_dssp             EEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE------TTSCEEEEET
T ss_pred             EEEec--CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc------cCCeEEEEEC
Confidence            88888  6999999998865   222222  111            699999999999999999      6999999999


Q ss_pred             c-CcEEEecc--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          73 Q-GKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        73 ~-g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      . ++++....  ...|.+++|+|+|+.|++++.|+..
T Consensus       303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~  339 (368)
T 3mmy_A          303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS  339 (368)
T ss_dssp             TTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred             CCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence            5 77777653  6789999999999999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.54  E-value=7.7e-14  Score=109.25  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|+|+|++|++++. .|++|++||..+++.+.... +..+.+++|+|||++|+.++.     .++.+++||+. ++.+.
T Consensus        37 ~~~s~dg~~l~~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           37 AVISPDGTKVYVANA-HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM-----ASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEECC-CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEEC-----CCCEEEEEECCCCeEEE
Confidence            479999998854432 48999999999998877654 358999999999999876663     47899999996 55555


Q ss_pred             ecc-CCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          79 RFN-SPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        79 ~~~-~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                      ... ...+.+++|+|+++.| ++++.++.|+
T Consensus       111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A          111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            543 5678999999999988 7888777665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.53  E-value=4.3e-14  Score=110.01  Aligned_cols=99  Identities=14%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeee---------------ccCceEEEEECC-CCCEEEEeecCcceec
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAA---------------EHHQATDVEWDP-TGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~---------------~~~~v~~i~wsP-dG~~lat~s~~~~~~~   63 (143)
                      ++|+| +|++||+++  .||.|++||+.+++.....               +...|++++|+| ++++|++++      .
T Consensus        49 ~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~  120 (408)
T 4a11_B           49 LDIEPVEGRYMLSGG--SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS------F  120 (408)
T ss_dssp             EEECTTTCCEEEEEE--TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE------T
T ss_pred             EEEecCCCCEEEEEc--CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe------C
Confidence            57999 999999999  6999999999865432221               345799999999 888999999      6


Q ss_pred             CCcEEEEeec-CcEEEec-cCCcEEEEEEeeCCC---eeeecCchhhHH
Q psy5876          64 DTGYWQWSFQ-GKIIKRF-NSPTFCQLRWRPRPA---SLLSKEQVDKIK  107 (143)
Q Consensus        64 D~~i~iW~~~-g~~l~~~-~~~~v~~l~wsP~~~---~l~s~s~d~~i~  107 (143)
                      |+.+++||+. ++.+... ....+..+.|.|.++   .+++++.++.|+
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred             CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence            9999999996 5555554 467899999999654   899999888775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.52  E-value=1.1e-13  Score=110.95  Aligned_cols=97  Identities=12%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++++|++|++|+  .||+|++||+.+++.+..+.  ...|++++|+|++ +|++|+      .|+.+++||+. |+++.
T Consensus       127 ~~~~~~~~l~sgs--~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s------~dg~i~vwd~~~~~~~~  197 (464)
T 3v7d_B          127 CLQFEDNYVITGA--DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS------TDRTVRVWDIKKGCCTH  197 (464)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE------TTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEc--CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe------CCCCEEEEECCCCcEEE
Confidence            4677899999999  69999999999998887763  3579999999999 899999      69999999995 77776


Q ss_pred             ec--cCCcEEEEEEe--eCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWR--PRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~ws--P~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+  |+++.+++++.|+.|+
T Consensus       198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             EECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             EECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            65  46789999999  4778999999999886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.52  E-value=1.1e-13  Score=112.99  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=74.7

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeee-c-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAA-E-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~-~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ++|+|+ +++||+++  .||+|++||+.++..+... . ...+++++|||||++||+|+      .|+.+++||..|+..
T Consensus       155 v~~~p~~~~~las~s--~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs------~dg~v~iwd~~~~~~  226 (434)
T 2oit_A          155 MKWNPTVPSMVAVCL--ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK------QNGTVVQYLPTLQEK  226 (434)
T ss_dssp             EEECSSCTTEEEEEE--TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE------TTSCEEEECTTCCEE
T ss_pred             EEECCCCCCEEEEEE--CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc------CCCcEEEEccCCccc
Confidence            579998 89999998  6999999999987655432 2 35799999999999999999      699999999987655


Q ss_pred             Eec--cC-------CcEEEEEEeeCCCeeeec
Q psy5876          78 KRF--NS-------PTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        78 ~~~--~~-------~~v~~l~wsP~~~~l~s~  100 (143)
                      ...  +.       ..|.+++|+|++..+++.
T Consensus       227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             EEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             ccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            432  11       179999999999888643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.52  E-value=8.3e-14  Score=116.71  Aligned_cols=98  Identities=7%  Similarity=0.078  Sum_probs=77.4

Q ss_pred             CeEecC------CCEEEEEecCCCCeEEEEECCCceEE-----------ee--eccCceEEEEECCCCCEEEEeecCcce
Q psy5876           1 MKLRMR------GTHIVLAELRDTGSLEFVDTGDFSVM-----------NA--AEHHQATDVEWDPTGRYVMSGVSLWKT   61 (143)
Q Consensus         1 i~~SPd------G~~las~~~~~dg~i~iWd~~~~~~~-----------~~--~~~~~v~~i~wsPdG~~lat~s~~~~~   61 (143)
                      ++|+|+      |++||+++  .||+|++||+.+++..           ..  .+...|++++|+|++ +||+|+     
T Consensus       213 v~wsp~~~~~~~~~~LAs~s--~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs-----  284 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVS--QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGF-----  284 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEE--TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEE-----
T ss_pred             EEECCCCCCCCCCceEEEEe--cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEe-----
Confidence            478886      68999999  6999999998765311           12  233579999999975 799999     


Q ss_pred             ecCCcEEEEeec-CcE-E--EeccCCcEEEE--EEeeCC-CeeeecCchhhHH
Q psy5876          62 KADTGYWQWSFQ-GKI-I--KRFNSPTFCQL--RWRPRP-ASLLSKEQVDKIK  107 (143)
Q Consensus        62 ~~D~~i~iW~~~-g~~-l--~~~~~~~v~~l--~wsP~~-~~l~s~s~d~~i~  107 (143)
                       .|++|++||+. +.. +  ...|...|.++  +|+|+| ..|+|++.|++||
T Consensus       285 -~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          285 -KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             -TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             -CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence             69999999996 532 2  23467889999  678998 8899999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.51  E-value=1.5e-13  Score=110.20  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      +++|+|++|++++  .||.|++||+.+++.+..+.  ...|++++|+|+|++|++++      .|+.+++||+ +|+++.
T Consensus       275 ~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          275 TVSGHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS------MDTTIRIWDLENGELMY  346 (464)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE------TTSCEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEE
Confidence            4689999999999  69999999999998887763  35799999999999999999      6999999999 587777


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+  +..|++++.|+.|+
T Consensus       347 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~  375 (464)
T 3v7d_B          347 TLQGHTALVGLLRLS--DKFLVSAAADGSIR  375 (464)
T ss_dssp             EECCCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             EEeCCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence            65  46789999997  57999999999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.51  E-value=2.2e-13  Score=106.64  Aligned_cols=100  Identities=11%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEE-EEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYV-MSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|++|++++. .++.|++||+.+++.+.... +..+.+++|+|||++| ++++      .|+.+++||+. ++.+
T Consensus        79 ~~~spdg~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNM-ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVTKAVI  151 (391)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEEE
T ss_pred             eEECCCCCEEEEEEC-CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEE
Confidence            479999999977664 47999999999988776654 4578999999999988 5655      58999999995 6666


Q ss_pred             Eecc-CCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          78 KRFN-SPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                      .... ...+..++|+|+++.| ++++.++.|+
T Consensus       152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~  183 (391)
T 1l0q_A          152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS  183 (391)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEecCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            6554 5678999999999988 6777776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.1e-13  Score=104.30  Aligned_cols=96  Identities=8%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             eEec-CCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      .|+| ++++|++++  .||.|++||.......... +...+.+++|+|+|+ |++++      .|+.+++||+. ++.+.
T Consensus       149 ~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~------~dg~i~i~d~~~~~~~~  219 (313)
T 3odt_A          149 KVVSFSENKFLTAS--ADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS------NDGLIKLVDMHTGDVLR  219 (313)
T ss_dssp             EEEETTTTEEEEEE--TTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE------TTSEEEEEETTTCCEEE
T ss_pred             EEccCCCCEEEEEE--CCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc------CCCeEEEEECCchhhhh
Confidence            5677 999999999  6999999995543333333 345799999999999 88888      59999999995 77776


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+|++ .|++++.|+.|+
T Consensus       220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             EEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred             hhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence            65  46789999999999 699999998876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.49  E-value=3.6e-13  Score=108.66  Aligned_cols=99  Identities=10%  Similarity=0.161  Sum_probs=73.6

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEE-EeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVM-SGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~la-t~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ++|||||++||.++.+ .+..|++||+.+++...... ...+.+++|||||++|+ +++..    .+..+++||+.+..+
T Consensus       184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQI  259 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCE
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCE
Confidence            4799999999999842 11499999999887654332 35789999999999998 44421    234599999964433


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ...  +...+.+++|+|||+.|+.++.+
T Consensus       260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred             EeCcCCCCcccceEECCCCCEEEEEECC
Confidence            433  35679999999999999987753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.48  E-value=2.9e-13  Score=108.88  Aligned_cols=99  Identities=15%  Similarity=0.284  Sum_probs=79.1

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCc---eEEeee--ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDF---SVMNAA--EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~---~~~~~~--~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|+| ++++|++++  .||.|++||+.+.   +.+...  +...|++++|+|+|+ +|++|+      .|+.|++||+.
T Consensus       237 v~~~p~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~------~dg~v~vwd~~  308 (430)
T 2xyi_A          237 VAWHLLHESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS------ADKTVALWDLR  308 (430)
T ss_dssp             EEECSSCTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSEEEEEETT
T ss_pred             eEEeCCCCCEEEEEe--CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe------CCCeEEEEeCC
Confidence            47999 778888988  6999999999865   333333  346799999999998 588888      69999999995


Q ss_pred             --CcEEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          74 --GKIIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        74 --g~~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                        +..+...  +...|.+++|+|+++ .|++++.|+.|+
T Consensus       309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence              3444443  577999999999996 588999888775

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.45  E-value=1.1e-12  Score=104.02  Aligned_cols=106  Identities=10%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcc---------eecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWK---------TKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~---------~~~D~~i~iW   70 (143)
                      ++|+|+|++|++++. .++.|++||+.+++.+....+ ..+.+++|+|||++|++++....         -..|+.+++|
T Consensus       308 ~~~~~~g~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          308 IVSGNTENKIYVSDM-CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEECSSTTEEEEEET-TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEECCCCCEEEEEec-CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence            479999987766543 589999999999887776543 56999999999999998884210         0115699999


Q ss_pred             ee-cCcEEEecc-CCcEEEEEEeeCCCeeeecCc-hhhHH
Q psy5876          71 SF-QGKIIKRFN-SPTFCQLRWRPRPASLLSKEQ-VDKIK  107 (143)
Q Consensus        71 ~~-~g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~-d~~i~  107 (143)
                      |. +++.+.... ...+.+++|+|+|+.|++++. |+.|+
T Consensus       387 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          387 DTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             ECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence            99 466666553 567999999999999987654 66553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.44  E-value=3.6e-13  Score=114.13  Aligned_cols=95  Identities=9%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             CeEecCCCEEEEEecCCCC-----eEEEEECCCceEEeeec--c------------------------CceEEEEECCCC
Q psy5876           1 MKLRMRGTHIVLAELRDTG-----SLEFVDTGDFSVMNAAE--H------------------------HQATDVEWDPTG   49 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg-----~i~iWd~~~~~~~~~~~--~------------------------~~v~~i~wsPdG   49 (143)
                      ++|||||++|++++. .||     +|.+||+.+++......  .                        ..+.+++|||||
T Consensus        42 ~~~SpdG~~la~~~~-~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg  120 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRG-KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA  120 (741)
T ss_dssp             EEECTTSSEEEEEEC-CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred             ceEecCCCEEEEEec-cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence            479999999999983 267     89999999887544332  1                        127899999999


Q ss_pred             CEEEEeecCcceecCCcEEEEeecCc---EEEec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          50 RYVMSGVSLWKTKADTGYWQWSFQGK---IIKRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        50 ~~lat~s~~~~~~~D~~i~iW~~~g~---~l~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ++|++++       ++.+++||+.+.   .+...  +...+..++|+|||+.|+.++++
T Consensus       121 ~~l~~~~-------~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~  172 (741)
T 2ecf_A          121 QRLLFPL-------GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR  172 (741)
T ss_dssp             SEEEEEE-------TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEe-------CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC
Confidence            9999999       478999999754   44433  34679999999999999988754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=7.1e-13  Score=114.31  Aligned_cols=99  Identities=12%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             CeEecC--CCEEEEEecCCCCeEEEEECCCce--EEeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMR--GTHIVLAELRDTGSLEFVDTGDFS--VMNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPd--G~~las~~~~~dg~i~iWd~~~~~--~~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|+|+  |++|++|+  .||+|++||+.+++  .+...  +...|++++|+|+  |++|++|+      .|+.|++||+
T Consensus        59 l~~s~~~~~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs------~dg~I~vwdl  130 (753)
T 3jro_A           59 VDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEF  130 (753)
T ss_dssp             EEECCTTSCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEEC
T ss_pred             EEecCCCCCCEEEEEe--CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe------CCCcEEEEEe
Confidence            479998  99999999  69999999998875  44443  3357999999999  99999999      6999999999


Q ss_pred             cCc-E--E--EeccCCcEEEEEEee-------------CCCeeeecCchhhHH
Q psy5876          73 QGK-I--I--KRFNSPTFCQLRWRP-------------RPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g~-~--l--~~~~~~~v~~l~wsP-------------~~~~l~s~s~d~~i~  107 (143)
                      ... .  .  ...+...|.+++|+|             ++..+++++.|+.|+
T Consensus       131 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~  183 (753)
T 3jro_A          131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK  183 (753)
T ss_dssp             CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEE
T ss_pred             ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEE
Confidence            532 1  1  223567899999999             599999999999876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.42  E-value=6.5e-13  Score=112.56  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=73.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc---eEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---SVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      ++|||||++|++++   ++.|.+||+.++   +...... ...+..++|||||++||+++       ++.+++||+.+..
T Consensus       114 ~~~SpDg~~l~~~~---~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-------~~~i~~~d~~~g~  183 (741)
T 2ecf_A          114 YQWSPDAQRLLFPL---GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-------GRNLWVIDLASGR  183 (741)
T ss_dssp             CEECTTSSEEEEEE---TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-------TTEEEEEETTTTE
T ss_pred             eEECCCCCEEEEEe---CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-------CCcEEEEecCCCC
Confidence            57999999999998   499999999887   4432222 35699999999999999998       5689999997544


Q ss_pred             EEec-c--CCc----------------EEEEEEeeCCCeeeecCchh
Q psy5876          77 IKRF-N--SPT----------------FCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        77 l~~~-~--~~~----------------v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .... .  ...                +..++|+|||+.|+.++.|+
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            3332 2  222                47799999999999987664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.42  E-value=3.5e-13  Score=108.63  Aligned_cols=101  Identities=8%  Similarity=0.129  Sum_probs=66.1

Q ss_pred             CeEecC----CCEEEEEec------------------CCCCeEEEEEC-CCceEEee--eccCceEEEEECC---CCCEE
Q psy5876           1 MKLRMR----GTHIVLAEL------------------RDTGSLEFVDT-GDFSVMNA--AEHHQATDVEWDP---TGRYV   52 (143)
Q Consensus         1 i~~SPd----G~~las~~~------------------~~dg~i~iWd~-~~~~~~~~--~~~~~v~~i~wsP---dG~~l   52 (143)
                      |+||||    |+++++++.                  +-|+.|++|++ .+++.+..  .+...++.++|||   ||.+|
T Consensus       117 la~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L  196 (356)
T 2w18_A          117 LFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL  196 (356)
T ss_dssp             ECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred             EEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence            467888    888887662                  02566667776 33544433  2334566777777   66778


Q ss_pred             EEeecCcceecCCcEEEEeec-CcEEEecc-----CCcEEEEEEeeCCCeee------------ecCchhhHH
Q psy5876          53 MSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-----SPTFCQLRWRPRPASLL------------SKEQVDKIK  107 (143)
Q Consensus        53 at~s~~~~~~~D~~i~iW~~~-g~~l~~~~-----~~~v~~l~wsP~~~~l~------------s~s~d~~i~  107 (143)
                      |++|      .|++|+|||+. |++++.+.     ...+.+++|+|+|+.++            |++.|++||
T Consensus       197 aSgS------~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          197 LGTT------IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEEE------TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             EEec------CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence            8888      69999999995 99888763     23678889999999874            456666665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.41  E-value=3.1e-13  Score=114.56  Aligned_cols=95  Identities=14%  Similarity=0.095  Sum_probs=72.4

Q ss_pred             CeEecCCCEEEEEecC-------CCCeEEEEECCCceEE--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELR-------DTGSLEFVDTGDFSVM--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~-------~dg~i~iWd~~~~~~~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|||||++||.++..       .+++|++||+.+++.+  ... ...+..++|||||++||.++       ++.|++|+
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-------~~~i~~~~  136 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-------QNNIYLKQ  136 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-------TTEEEEES
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE-------CCeEEEEe
Confidence            4799999999998720       1589999999998773  222 24688999999999999987       77999999


Q ss_pred             ec-CcEEEecc---CCcE-----------------EEEEEeeCCCeeeecCch
Q psy5876          72 FQ-GKIIKRFN---SPTF-----------------CQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        72 ~~-g~~l~~~~---~~~v-----------------~~l~wsP~~~~l~s~s~d  103 (143)
                      +. |+......   ...|                 ..++|+|||+.|++++.|
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            95 54433211   2223                 389999999999998765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.40  E-value=2.8e-12  Score=102.77  Aligned_cols=94  Identities=10%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      +++++|++|++++  .||.|++||+.+++.+..+.     ...|++++|+  +++|++++      .|+.|++||+ +|+
T Consensus       324 ~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~------~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          324 GMELKDNILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS------DDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE------TTSEEEEEETTTCC
T ss_pred             EEEEeCCEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe------CCCeEEEEECCCCc
Confidence            4677899999999  69999999999988877653     2469999996  68999999      6999999999 477


Q ss_pred             EEEec-------cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          76 IIKRF-------NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        76 ~l~~~-------~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .+...       +...|++++|+|++..|++++.|++
T Consensus       394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            77654       2567999999999999999999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.39  E-value=4.6e-13  Score=113.46  Aligned_cols=98  Identities=10%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C----ceEEEEECCCCCEEEEeecC---cceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H----QATDVEWDPTGRYVMSGVSL---WKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~----~v~~i~wsPdG~~lat~s~~---~~~~~D~~i~iW~~   72 (143)
                      ++|||||++++++.   ||+|++||+.+++......+ .    .+.+++|||||++||+++..   |+...++.+++||+
T Consensus        21 ~~~s~dg~~~~~~~---d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           21 PNWISGQEYLHQSA---DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CEESSSSEEEEECT---TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cEECCCCeEEEEcC---CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            47999997766653   89999999998876554432 2    38999999999999998841   22223689999999


Q ss_pred             cCcEE---EeccCCcEEEEEEeeCCCeeeecCc
Q psy5876          73 QGKII---KRFNSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        73 ~g~~l---~~~~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ++...   ... ...+..++|||||+.|+.+++
T Consensus        98 ~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~  129 (719)
T 1z68_A           98 SNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQ  129 (719)
T ss_dssp             TTTEECCSSCC-CSSBCCEEECSSTTCEEEEET
T ss_pred             CCCccccceec-CcccccceECCCCCEEEEEEC
Confidence            75544   222 356888999999999998753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.38  E-value=2.1e-12  Score=102.29  Aligned_cols=95  Identities=8%  Similarity=-0.005  Sum_probs=78.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|+|+|+++++++  .||.|++||+++++.+..+.  ...+.+++|+|+|+++++++.     .|+.+++||+. |+.+
T Consensus       175 ~~~~~~~~~~~s~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          175 ISIPEHNELWVSQM--QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW-----ISEDISVIDRKTKLEI  247 (433)
T ss_dssp             EEEGGGTEEEEEEG--GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET-----TTTEEEEEETTTTEEE
T ss_pred             EEEcCCCEEEEEEC--CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec-----CCCcEEEEECCCCcEE
Confidence            47899999999998  58999999999888776653  357999999999999865553     58899999994 6666


Q ss_pred             Eecc-CCcEEEEEEeeCCCeeeecCc
Q psy5876          78 KRFN-SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .... ...+..++|+|+|+.|++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          248 RKTDKIGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EECCCCSEEEEEEECTTSSEEEEEEE
T ss_pred             EEecCCCCceEEEEcCCCCEEEEEEC
Confidence            6554 457999999999999998874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.37  E-value=4e-12  Score=102.55  Aligned_cols=97  Identities=11%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~   75 (143)
                      ++|||||++|+.++. .+|  .|.+||+.+++...... ...+.+++|||||++|++++.     .++  .+++||+.+.
T Consensus       228 ~~~spdg~~la~~~~-~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~-----~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          228 PAFSPDGSKLAFALS-KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD-----QAGRPQVYKVNINGG  301 (415)
T ss_dssp             EEECTTSSEEEEEEC-TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSS
T ss_pred             EEEcCCCCEEEEEEe-cCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC-----CCCCcEEEEEECCCC
Confidence            479999999984332 344  59999998876543322 346899999999999999883     233  6777888654


Q ss_pred             EEEe--ccCCcEEEEEEeeCCCeeeecCch
Q psy5876          76 IIKR--FNSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .+..  .+...+..++|+|+|+.|+.++.+
T Consensus       302 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          302 APQRITWEGSQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             CCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             CEEEEecCCCcccCeEECCCCCEEEEEECc
Confidence            3333  235678899999999999987754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.37  E-value=1.8e-12  Score=96.09  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=71.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeeec-c--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAAE-H--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~~-~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g   74 (143)
                      ++|||||++|++++   ++.|.+||+.+ ++...... +  ..+.+++|+|||++|++++..    .++...||.+  .+
T Consensus        47 ~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           47 PNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV----EFGKSAIYLLPSTG  119 (297)
T ss_dssp             EEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT----TTSSCEEEEEETTC
T ss_pred             eEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC----CCCcceEEEEECCC
Confidence            47999999999987   78999999988 76544332 2  467899999999999999832    2334555554  44


Q ss_pred             cEEEec-cCCcEEEEEEeeCCCeee-ecCchhh
Q psy5876          75 KIIKRF-NSPTFCQLRWRPRPASLL-SKEQVDK  105 (143)
Q Consensus        75 ~~l~~~-~~~~v~~l~wsP~~~~l~-s~s~d~~  105 (143)
                      ...... ....+..++|+|+++.|+ +++.++.
T Consensus       120 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  152 (297)
T 2ojh_A          120 GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV  152 (297)
T ss_dssp             CCCEECCSSSSEEEEEECTTSSEEEEEEEETTE
T ss_pred             CceEEeecCCCccceEECCCCCEEEEEECCCCc
Confidence            444433 345689999999999888 6666654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.36  E-value=5.5e-12  Score=101.09  Aligned_cols=94  Identities=13%  Similarity=0.292  Sum_probs=80.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++++|++|++|+  .||+|++||+.+++.+..+.  ...|++++|  +|++|++|+      .|+.|++||+. |+++.
T Consensus       138 ~~~~d~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~------~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          138 CLQYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS------SDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEECCSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE------TTSCEEEEESSSCCEEE
T ss_pred             EEEECCCEEEEEe--CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEc------CCCeEEEEECCCCcEEE
Confidence            5788999999999  69999999999988877663  357999988  899999999      69999999995 77776


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+|  ..+++++.|+.|+
T Consensus       208 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  236 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNN--GMMVTCSKDRSIA  236 (435)
T ss_dssp             EECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred             EEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence            65  467899999974  5999999999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.36  E-value=1.7e-13  Score=115.70  Aligned_cols=99  Identities=13%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C----ceEEEEECCCCCEEEEeecCc---ceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H----QATDVEWDPTGRYVMSGVSLW---KTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~----~v~~i~wsPdG~~lat~s~~~---~~~~D~~i~iW~~   72 (143)
                      ++|||||+++++ +  .||+|++||+.+++......+ .    .+.+++|||||++||+++...   +...++.+++||+
T Consensus        22 ~~~spdg~~~~~-~--~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           22 AKWISDTEFIYR-E--QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCBSSSSCBCCC-C--SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             cEEcCCCcEEEE-e--CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            579999998876 4  489999999998765544432 2    389999999999999998421   1123478999999


Q ss_pred             cCcEEEecc-----CCcEEEEEEeeCCCeeeecCc
Q psy5876          73 QGKIIKRFN-----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        73 ~g~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ++.......     ...+..++|+|||+.|+.++.
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~  133 (723)
T 1xfd_A           99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE  133 (723)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET
T ss_pred             CCCceEeccCCccccccccccEECCCCCEEEEEEC
Confidence            644323221     224889999999999998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.36  E-value=4.5e-12  Score=112.52  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCc----ceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLW----KTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~----~~~~D~~i~iW~~~g   74 (143)
                      ++|||||++||+++  .++.|++||+.+++.....  +...+..++|||||++||+++...    ....++.+++||+.+
T Consensus       384 ~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          384 MGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            47999999999998  5899999999988765544  334689999999999999987410    000135899999975


Q ss_pred             cEEEec--cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          75 KIIKRF--NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        75 ~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ..+...  +...+..++|+|+|+.|+..+.+.
T Consensus       462 g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          462 RKIFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             TEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             CcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            545543  355788999999999999877643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.34  E-value=1.3e-12  Score=110.30  Aligned_cols=97  Identities=11%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             CeEecCCCEEEEEecC-------CCCeEEEEECCCceE--Eeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-------DTGSLEFVDTGDFSV--MNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~-------~dg~i~iWd~~~~~~--~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|||||++||+++.+       .++.+.+||+.+++.  +.... + ..+..++|||||++||.++       ++.+++
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~  138 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-------ENNIYY  138 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-------TTEEEE
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE-------CCeEEE
Confidence            4799999999998731       037899999998764  22221 1 2378899999999999999       578999


Q ss_pred             Eeec-CcEEEe--ccCCc------------------EEEEEEeeCCCeeeecCchh
Q psy5876          70 WSFQ-GKIIKR--FNSPT------------------FCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        70 W~~~-g~~l~~--~~~~~------------------v~~l~wsP~~~~l~s~s~d~  104 (143)
                      |+.. |+....  .+...                  +..++|+|||+.|++++.+.
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence            9996 443332  22222                  27899999999999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.32  E-value=1.4e-11  Score=98.64  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++|+|++|++|+  .||+|++||+.+++.+..+.  ...|.+++|+  +++|++|+      .|+.|++||+. |+++.
T Consensus       124 ~~~~~g~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~------~dg~i~vwd~~~~~~~~  193 (445)
T 2ovr_B          124 CLQFCGNRIVSGS--DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGS------TDRTLKVWNAETGECIH  193 (445)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEE------TTSCEEEEETTTTEEEE
T ss_pred             EEEEcCCEEEEEE--CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEe------CCCeEEEEECCcCcEEE
Confidence            5788999999999  69999999999998877663  3579999998  67999999      69999999995 77766


Q ss_pred             ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  +...|.+++|+  +..+++++.|+.|+
T Consensus       194 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          194 TLYGHTSTVRCMHLH--EKRVVSGSRDATLR  222 (445)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             EECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence            54  46789999885  56899999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.32  E-value=6.3e-12  Score=95.74  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=74.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--Cce--EEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFS--VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~--~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      ++|||||++|++++. .++.|.+|+++  +++  .+.... ...+..++|+|||++|++++.     .++.+.+|++. |
T Consensus        43 ~~~spdg~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~i~~~d~~~~  116 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVR-PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY-----NAGNVSVTRLEDG  116 (343)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET-----TTTEEEEEEEETT
T ss_pred             EEECCCCCEEEEeec-CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec-----CCCeEEEEECCCC
Confidence            479999999999884 24999999987  443  333332 347889999999999988774     47789999992 3


Q ss_pred             ---cEEEecc-CCcEEEEEEeeCCCeeeecC-chhhHH
Q psy5876          75 ---KIIKRFN-SPTFCQLRWRPRPASLLSKE-QVDKIK  107 (143)
Q Consensus        75 ---~~l~~~~-~~~v~~l~wsP~~~~l~s~s-~d~~i~  107 (143)
                         +.+.... ...+..++|+|+|+.|+.++ .++.|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A          117 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence               2333333 45688999999999888765 555543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.32  E-value=9.5e-13  Score=109.32  Aligned_cols=98  Identities=10%  Similarity=0.019  Sum_probs=71.4

Q ss_pred             CeEecCCCEEEEEecCCC----CeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDT----GSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d----g~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~   73 (143)
                      ++|||||++||.++.  +    +.|.+||+.+++...-. +...+..++|||||++|+++.      .++  .+++||++
T Consensus       155 ~~~spDG~~la~~~~--~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~------~~~~~~i~~~d~~  226 (582)
T 3o4h_A          155 FVSDIRGDLIAGLGF--FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE------TAREARLVTVDPR  226 (582)
T ss_dssp             EEEEEETTEEEEEEE--EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE------CSSCEEEEEECTT
T ss_pred             EEECCCCCEEEEEEE--cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc------CCCeeEEEEEcCC
Confidence            379999999998763  4    68999998877644322 235689999999999999655      455  79999996


Q ss_pred             CcEEEecc--CCcEEEEE--------EeeCCCeeeecCchhhH
Q psy5876          74 GKIIKRFN--SPTFCQLR--------WRPRPASLLSKEQVDKI  106 (143)
Q Consensus        74 g~~l~~~~--~~~v~~l~--------wsP~~~~l~s~s~d~~i  106 (143)
                      +.......  ...+..++        |+|||..+++++.++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          227 DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             TCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             CCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence            44333322  23444555        99999888888887754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.30  E-value=8.8e-12  Score=105.24  Aligned_cols=101  Identities=11%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-----ceEEeee--ccCc--------------eEEEEECCCCCEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAA--EHHQ--------------ATDVEWDPTGRYVMSGVSLW   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~--~~~~--------------v~~i~wsPdG~~lat~s~~~   59 (143)
                      ++|||||++||.+.   ++.|.+||+.+     ++.....  +...              +.+++|||||++||+++.+.
T Consensus       126 ~~~SpdG~~la~~~---~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~  202 (706)
T 2z3z_A          126 LDFSPVGDRVAYVR---NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ  202 (706)
T ss_dssp             CEECTTSSEEEEEE---TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred             CcCCCCCCEEEEEE---CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence            57999999999975   79999999987     6654322  2222              48899999999999987210


Q ss_pred             c---------------------------eecCCcEEEEeecCcEEEe-c----cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          60 K---------------------------TKADTGYWQWSFQGKIIKR-F----NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        60 ~---------------------------~~~D~~i~iW~~~g~~l~~-~----~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .                           ...+..+++||+.+..... .    +...+.+++|+|||+.|++++.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  279 (706)
T 2z3z_A          203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR  279 (706)
T ss_dssp             TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred             CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence            0                           0024578999996543322 2    234689999999999999876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.30  E-value=2.6e-11  Score=89.75  Aligned_cols=96  Identities=9%  Similarity=0.096  Sum_probs=72.2

Q ss_pred             CeEecCCCEEE-EEecCCCCeEEEEEC--CCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876           1 MKLRMRGTHIV-LAELRDTGSLEFVDT--GDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G   74 (143)
Q Consensus         1 i~~SPdG~~la-s~~~~~dg~i~iWd~--~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g   74 (143)
                      ++|||||++|+ +++  .++.++||++  .+++..... +...+.+++|+|||++|+.++.     .++.+.||+++  +
T Consensus       134 ~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          134 HGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS-----RTGQMQIWRVRVDG  206 (297)
T ss_dssp             EEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTS
T ss_pred             eEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec-----CCCCccEEEECCCC
Confidence            37999999998 455  4899999995  444443322 2357899999999999988773     47788899884  5


Q ss_pred             cEEEecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876          75 KIIKRFN--SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        75 ~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ..+....  ...+..++|+|+|+.|+.++.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          207 SSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             SCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            5555443  4578899999999999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.30  E-value=8.3e-12  Score=107.12  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             eEecCCCEEEEEecCCC---------CeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           2 KLRMRGTHIVLAELRDT---------GSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         2 ~~SPdG~~las~~~~~d---------g~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      +|||||++|+.++.  +         +.+.+||+.++++..... ...+..++|||||++||.++       |+.|++|+
T Consensus        68 ~~Spdg~~l~~~~~--~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~~~  138 (740)
T 4a5s_A           68 SISPDGQFILLEYN--YVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKI  138 (740)
T ss_dssp             EECTTSSEEEEEEE--EEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEES
T ss_pred             EECCCCCEEEEEEC--CeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-------CCeEEEEE
Confidence            68999999999872  3         677899999987654322 35689999999999999987       78899999


Q ss_pred             ec-CcEEEecc---CCcEE-----------------EEEEeeCCCeeeecCchhh
Q psy5876          72 FQ-GKIIKRFN---SPTFC-----------------QLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        72 ~~-g~~l~~~~---~~~v~-----------------~l~wsP~~~~l~s~s~d~~  105 (143)
                      .. |...+...   ...+.                 .++|||||+.|+..+.|..
T Consensus       139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~  193 (740)
T 4a5s_A          139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (740)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc
Confidence            96 44332111   22232                 4899999999999876654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.29  E-value=1.1e-11  Score=104.00  Aligned_cols=97  Identities=10%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee---cCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF---QGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~---~g~~l   77 (143)
                      .|+|+|+.+++++  .+++|.+||..+++++.++. +..+..++|||||++|++++      .|+.|.+||+   +++++
T Consensus       144 ~~~p~~~~~vs~~--~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~------~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG------RDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEG--GGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEE------TTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEc--CCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEEC------CCCeEEEEECcCCCCcEE
Confidence            4789998888877  58999999999999888765 44588999999999999999      5899999999   46677


Q ss_pred             Eecc-CCcEEEEEEee----CCCeeeecCc-hhhH
Q psy5876          78 KRFN-SPTFCQLRWRP----RPASLLSKEQ-VDKI  106 (143)
Q Consensus        78 ~~~~-~~~v~~l~wsP----~~~~l~s~s~-d~~i  106 (143)
                      .... .....+++|+|    +|++|++++. +++|
T Consensus       216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v  250 (543)
T 1nir_A          216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  250 (543)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeE
Confidence            6654 55789999999    9999998874 4444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.28  E-value=3.6e-11  Score=93.68  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec-----cCceEEEEECCCCCEEEEeecCcceec-CCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKA-DTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~-D~~i~iW~~   72 (143)
                      ++|||||++|++++. .++.|.+||+++++.  +....     ......++|||||++|+++..     . ++.+.+|++
T Consensus       216 ~~~spdg~~l~v~~~-~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-----~~~~~i~v~~~  289 (361)
T 3scy_A          216 LIFNSDGKFAYLINE-IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-----LKADGVAIFKV  289 (361)
T ss_dssp             EEECTTSSEEEEEET-TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-----SSSCEEEEEEE
T ss_pred             EEEcCCCCEEEEEcC-CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-----CCCCEEEEEEE
Confidence            479999999988775 479999999887653  22221     134789999999999977763     4 578999999


Q ss_pred             c---CcE--EEecc-CCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876          73 Q---GKI--IKRFN-SPTFCQLRWRPRPASLLSKEQ-VDKI  106 (143)
Q Consensus        73 ~---g~~--l~~~~-~~~v~~l~wsP~~~~l~s~s~-d~~i  106 (143)
                      +   |+.  +.... ...+.+++|+|+|++|+.++. +..|
T Consensus       290 ~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          290 DETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             CTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred             cCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence            4   552  32222 346789999999998887763 4443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.27  E-value=4.2e-11  Score=95.94  Aligned_cols=93  Identities=17%  Similarity=0.305  Sum_probs=78.6

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~   79 (143)
                      .+++|++|++|+  .||+|++||+.+++.+..+.  ...+.+++|  +|++|++|+      .|+.|++||+. |+++..
T Consensus       262 ~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~------~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          262 VDFDDKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS------SDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             EEEETTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE------TTSCEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEe--CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe------CCCeEEEEECCCCCEEEE
Confidence            345899999999  69999999999988877653  357899988  578999999      69999999995 887776


Q ss_pred             c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          80 F--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        80 ~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  +...|.+++|  ++..|++++.|+.|+
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~  359 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIK  359 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEE
Confidence            5  4678999988  889999999999875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.25  E-value=5.5e-11  Score=91.16  Aligned_cols=97  Identities=11%  Similarity=0.115  Sum_probs=75.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~   79 (143)
                      ++|+|||++|++++. .++.|.+||..+++.+..........++|+|||++++.+..     .++.+.+||.. ++.+..
T Consensus       236 ~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~-----~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          236 ISLDTARQRAFITDS-KAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHR-----QAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EEEETTTTEEEEEES-SSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEET-----TTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEEC-----CCCeEEEEECCCCeEEEE
Confidence            479999998888774 36899999999988776654333467999999997766663     58899999995 666665


Q ss_pred             cc-CCcEEEEEEeeCCCeeeecCch
Q psy5876          80 FN-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        80 ~~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .. ......++|+|+|+.|+.....
T Consensus       310 ~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          310 FDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EecCCCCCeEEEcCCCCEEEEEEcc
Confidence            54 4578999999999977655443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.25  E-value=3.4e-11  Score=91.66  Aligned_cols=100  Identities=9%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC---CCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT---GDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~---~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g   74 (143)
                      ++|+|+|++|++++. .++.|.+||+   .+.+.+.... +..+.+++|+|||++|++++.     .++.+.+|++.  |
T Consensus        89 ~~~s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSY-NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL-----KQDRICLFTVSDDG  162 (343)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-----GGTEEEEEEECTTS
T ss_pred             EEEcCCCCEEEEEec-CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC-----CCCEEEEEEecCCC
Confidence            479999999988775 4789999999   4444454443 346889999999999888874     47899999995  5


Q ss_pred             cEEE------ecc-CCcEEEEEEeeCCCeee-ecCchhhH
Q psy5876          75 KIIK------RFN-SPTFCQLRWRPRPASLL-SKEQVDKI  106 (143)
Q Consensus        75 ~~l~------~~~-~~~v~~l~wsP~~~~l~-s~s~d~~i  106 (143)
                      +...      ... ...+..++|+|+|+.|+ +...++.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i  202 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV  202 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            4321      122 34788999999999775 44455544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.23  E-value=1.5e-10  Score=89.43  Aligned_cols=99  Identities=11%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC---CceEEeeecc-----------CceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG---DFSVMNAAEH-----------HQATDVEWDPTGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~---~~~~~~~~~~-----------~~v~~i~wsPdG~~lat~s~~~~~~~D~~   66 (143)
                      ++|||||++|++++. .++.|.+||++   +.+.+.....           ..+..++|+|||+.+++..      .++.
T Consensus        91 ~a~spdg~~l~~~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~------~~~~  163 (347)
T 3hfq_A           91 VAVDEARQLVYSANY-HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL------GSDK  163 (347)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET------TTTE
T ss_pred             EEECCCCCEEEEEeC-CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC------CCCE
Confidence            479999999999875 47999999986   3333433321           1378899999999555544      5788


Q ss_pred             EEEEeec--CcEEE--e--cc-CCcEEEEEEeeCCCeeee-cCchhhH
Q psy5876          67 YWQWSFQ--GKIIK--R--FN-SPTFCQLRWRPRPASLLS-KEQVDKI  106 (143)
Q Consensus        67 i~iW~~~--g~~l~--~--~~-~~~v~~l~wsP~~~~l~s-~s~d~~i  106 (143)
                      +.+|+++  |++..  .  .. ......++|+|+|+.|+. ...+..|
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI  211 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence            9999996  54332  1  12 346788999999996665 4444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.23  E-value=3.5e-11  Score=91.94  Aligned_cols=96  Identities=10%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C--ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++++|+++++++++  .+++|.+||..+++.+..... .  .+..++|+|||++++.++.     .++.+.+||.. |+.
T Consensus         5 ~~~~~~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-----~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            5 PALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-----HYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET-----TTTEEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeC--CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC-----CCCcEEEEeCCCCcE
Confidence            46889999999988  589999999999887766532 3  5789999999997766553     57899999995 666


Q ss_pred             EEeccC-C-------cEEEEEEeeCCCeeeecCch
Q psy5876          77 IKRFNS-P-------TFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        77 l~~~~~-~-------~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +..... .       .+..++|+|+|+.|++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  112 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  112 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence            554432 1       26789999999999988754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.22  E-value=1.2e-10  Score=97.56  Aligned_cols=99  Identities=10%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC--CCceEEeeecc-CceEEEEECC----CCCEEEEeecCcceecCCcEEEEee-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT--GDFSVMNAAEH-HQATDVEWDP----TGRYVMSGVSLWKTKADTGYWQWSF-   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~--~~~~~~~~~~~-~~v~~i~wsP----dG~~lat~s~~~~~~~D~~i~iW~~-   72 (143)
                      ++|||||++|++++  .|++|.+||+  .+++++.+... ..+..++|||    ||+++++++.     .+++|.+||. 
T Consensus       184 v~~spdg~~l~v~~--~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~-----~~~~v~v~D~~  256 (543)
T 1nir_A          184 SRMSASGRYLLVIG--RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY-----WPPQFAIMDGE  256 (543)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----ESSEEEEEETT
T ss_pred             EEECCCCCEEEEEC--CCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc-----cCCeEEEEecc
Confidence            46999999999999  5799999999  78888777643 5689999999    9999999984     4899999998 


Q ss_pred             cCcEEEecc-------------CCcEEEEEEeeCCCe-eeecCchhhH
Q psy5876          73 QGKIIKRFN-------------SPTFCQLRWRPRPAS-LLSKEQVDKI  106 (143)
Q Consensus        73 ~g~~l~~~~-------------~~~v~~l~wsP~~~~-l~s~s~d~~i  106 (143)
                      +++++....             ...+.++.++|+++. +++..++++|
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            477766542             126899999998765 5566666655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.22  E-value=4.9e-11  Score=90.57  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C------ceEEEEECCCCCEEEEeecCc----cee--cCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H------QATDVEWDPTGRYVMSGVSLW----KTK--ADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~------~v~~i~wsPdG~~lat~s~~~----~~~--~D~~i   67 (143)
                      ++|||||++|++++. .++.|.+||+.+++.+..... .      .+..++|+|||++|++++...    ...  .++.+
T Consensus        39 ~~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i  117 (337)
T 1pby_B           39 PMVAPGGRIAYATVN-KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             eEEcCCCCEEEEEeC-CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence            479999998766654 478999999998887655431 1      567899999999998885210    000  26899


Q ss_pred             EEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeec
Q psy5876          68 WQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        68 ~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~  100 (143)
                      .+||.. ++.+.... ...+..++|+|+|+.|+.+
T Consensus       118 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B          118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe
Confidence            999996 55555443 4567889999999988876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.22  E-value=8.8e-11  Score=89.77  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eeeec-cCceEE-EEECCCCCEEEEeecCcceecC-C--cEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAAE-HHQATD-VEWDPTGRYVMSGVSLWKTKAD-T--GYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~~-~~~v~~-i~wsPdG~~lat~s~~~~~~~D-~--~i~iW~~~-   73 (143)
                      ++|||||++|++++. .++.|.+||..+++. ..... +..... ++|+|||++|+++.      .+ +  .+.+||.. 
T Consensus        45 ~~~s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           45 TAITSDCSNVVVTSD-FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVT------GLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EEECSSSCEEEEEES-TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECC------CSSSSCEEEEEETTT
T ss_pred             EEEcCCCCEEEEEeC-CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEec------CCCCcccEEEEECCC
Confidence            479999998888775 478999999988775 44332 334445 99999999999544      23 3  89999995 


Q ss_pred             CcEEEecc-CCcEEEEEEeeCCCeeeec-Cchhh
Q psy5876          74 GKIIKRFN-SPTFCQLRWRPRPASLLSK-EQVDK  105 (143)
Q Consensus        74 g~~l~~~~-~~~v~~l~wsP~~~~l~s~-s~d~~  105 (143)
                      ++.+.... ......++|+|+|+.|+.. ..+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A          118 NKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             CCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence            66665543 4567999999999866654 33344

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.22  E-value=2.5e-11  Score=100.75  Aligned_cols=99  Identities=9%  Similarity=0.016  Sum_probs=68.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-   80 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-   80 (143)
                      +|||||+.++..+. .++.+.+||+++++......+.. .+++|||||++||+++....  ....+++||+++..+... 
T Consensus       116 ~~s~dg~~~~~~s~-~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~--~~~~i~~~d~~~g~~~~l~  191 (582)
T 3o4h_A          116 SGVDTGEAVVFTGA-TEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGG--GRVSLFTSNLSSGGLRVFD  191 (582)
T ss_dssp             EEEECSSCEEEEEE-CSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEET--TEEEEEEEETTTCCCEEEC
T ss_pred             eeCCCCCeEEEEec-CCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCC--CCeEEEEEcCCCCCceEee
Confidence            68999975443322 24556699998877544333233 88999999999998874100  015689999864333332 


Q ss_pred             -cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          81 -NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        81 -~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                       +...+..++|+|||+.|++.+.++
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~  216 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAR  216 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSS
T ss_pred             cCCCccccceECCCCCEEEEccCCC
Confidence             356789999999999999776666

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.22  E-value=4.9e-11  Score=102.34  Aligned_cols=98  Identities=9%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--C---c--eEEEEECCCCCEEEEeecC---cceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--H---Q--ATDVEWDPTGRYVMSGVSL---WKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~---~--v~~i~wsPdG~~lat~s~~---~~~~~D~~i~iW   70 (143)
                      ++|+|||++|+++    ||+|++||+.+++....+..  .   .  ..+++|||||++|+.++..   ++....+.+++|
T Consensus        22 ~~w~~dg~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           22 LRWISDHEYLYKQ----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             EEECSSSEEEEEE----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cEECCCCcEEEEc----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            4799999999885    68999999998876544321  1   2  2458999999999998842   122223567899


Q ss_pred             eecCcEEEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          71 SFQGKIIKRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        71 ~~~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      |+.+..+....  ...+...+|||||+.|+.+++
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~  131 (740)
T 4a5s_A           98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN  131 (740)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET
T ss_pred             ECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC
Confidence            99766554442  567999999999999998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.21  E-value=1.6e-10  Score=88.59  Aligned_cols=100  Identities=16%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      ++|+|||++|++++  .++.|.+||..+++.+....      ...+..++|+|||++++.++.     .++.+.+||. +
T Consensus       190 ~~~s~dg~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~d~~~  262 (353)
T 3vgz_A          190 LALDSEGKRLYTTN--ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-----KAAEVLVVDTRN  262 (353)
T ss_dssp             CEEETTTTEEEEEC--TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-----SSSEEEEEETTT
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-----CCCEEEEEECCC
Confidence            57999999999988  58999999999988766542      235788999999998887774     4689999999 4


Q ss_pred             CcEEEeccCCcEEEEEEeeCCCeee-ecCchhhHH
Q psy5876          74 GKIIKRFNSPTFCQLRWRPRPASLL-SKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~~~~~v~~l~wsP~~~~l~-s~s~d~~i~  107 (143)
                      |+.+.......-..++|+|+|+.++ +...++.|.
T Consensus       263 ~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          263 GNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             CCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEE
Confidence            7776655433335799999999654 444555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.20  E-value=2.3e-10  Score=87.44  Aligned_cols=100  Identities=7%  Similarity=0.079  Sum_probs=72.2

Q ss_pred             CeEecCCCEEEEEecCCC-C--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCc-EEEEeec--
Q psy5876           1 MKLRMRGTHIVLAELRDT-G--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTG-YWQWSFQ--   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d-g--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~-i~iW~~~--   73 (143)
                      ++|||||++|+++.  .+ +  .|.+||+.+++.+...+ +.....++|+|||++|++++.     .++. +.+|+++  
T Consensus        89 ~~~s~dg~~l~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           89 VDITPDDQFAVTVT--GLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR-----SSANTVRRFKIDAD  161 (331)
T ss_dssp             EEECTTSSEEEECC--CSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE-----TTTTEEEEEEECTT
T ss_pred             eEECCCCCEEEEec--CCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec-----CCCceEEEEEECCC
Confidence            47999999999554  23 3  89999999988877654 346799999999997776653     4577 9999985  


Q ss_pred             CcEEE----ec-cCCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          74 GKIIK----RF-NSPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~----~~-~~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                      |....    .. .......++|+|+|+.| ++...++.|+
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence            33321    11 24568999999999965 4554555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.20  E-value=3.1e-10  Score=88.34  Aligned_cols=96  Identities=8%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-------E-------Eeee-ccCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-------V-------MNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-------~-------~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      ++|||||++|++++. .++.|.+|+++...       +       .... .......++|||||+++++++.     .++
T Consensus       160 ~~~spdg~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-----~~~  233 (361)
T 3scy_A          160 VRITPDGKYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE-----IGG  233 (361)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----TTC
T ss_pred             EEECCCCCEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC-----CCC
Confidence            479999998888775 47899999876322       1       1122 2346889999999999888774     478


Q ss_pred             cEEEEeec-CcE--EEecc-----CCcEEEEEEeeCCCeeeecCc
Q psy5876          66 GYWQWSFQ-GKI--IKRFN-----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        66 ~i~iW~~~-g~~--l~~~~-----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .+.+|+++ |++  +....     ......++|+|||+.|+....
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            99999996 433  22221     245789999999998865443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.18  E-value=3.8e-11  Score=101.34  Aligned_cols=92  Identities=16%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-----
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-----   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-----   74 (143)
                      ++|||| ++++.+.   +++|++||+.+++...... ...+.+++|||||++||++.       |+.|++|++.+     
T Consensus        87 ~~~spd-~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~-------~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           87 TLDAGR-GLVVLFT---QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR-------NHNLYIARGGKLGEGM  155 (706)
T ss_dssp             EEETTT-TEEEEEE---TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE-------TTEEEEEECBCTTSCC
T ss_pred             EEECCC-CeEEEEE---CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE-------CCeEEEEecCcccccC
Confidence            479999 7777765   6999999999887655443 34688899999999999965       78999999964     


Q ss_pred             -cEEEecc--CCc--------------EEEEEEeeCCCeeeecCch
Q psy5876          75 -KIIKRFN--SPT--------------FCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        75 -~~l~~~~--~~~--------------v~~l~wsP~~~~l~s~s~d  103 (143)
                       +......  ...              +.+++|+|||+.|++++.|
T Consensus       156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d  201 (706)
T 2z3z_A          156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMD  201 (706)
T ss_dssp             CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEE
T ss_pred             CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEEC
Confidence             4443222  222              4789999999999988743

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.18  E-value=2.6e-10  Score=88.13  Aligned_cols=99  Identities=9%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceEE--eee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSVM--NAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~--~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|||||+ |++++. .++.|.+||+. +++..  ...   ....+..++|+|||+++++++.     .++.+.+|+++ 
T Consensus       146 ~~~spdg~-l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~-----~~~~v~v~~~~~  218 (347)
T 3hfq_A          146 TDLTPDNR-LAVIDL-GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE-----LSSQIASLKYDT  218 (347)
T ss_dssp             EEECTTSC-EEEEET-TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----TTTEEEEEEEET
T ss_pred             EEECCCCc-EEEEeC-CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC-----CCCEEEEEEecC
Confidence            47999999 555544 47899999988 55432  211   1236788999999998877664     57899999986 


Q ss_pred             --CcE--EEecc--C------CcEEEEEEeeCCCee-eecCchhhH
Q psy5876          74 --GKI--IKRFN--S------PTFCQLRWRPRPASL-LSKEQVDKI  106 (143)
Q Consensus        74 --g~~--l~~~~--~------~~v~~l~wsP~~~~l-~s~s~d~~i  106 (143)
                        |+.  +....  .      ..+..++|+|+|+.| ++...+..|
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v  264 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL  264 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence              432  22211  1      358899999999987 455445444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.17  E-value=9.1e-11  Score=89.63  Aligned_cols=100  Identities=12%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--------CceEEEEECCCCCEEEEeecCc-----ce-ecCCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--------HQATDVEWDPTGRYVMSGVSLW-----KT-KADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--------~~v~~i~wsPdG~~lat~s~~~-----~~-~~D~~   66 (143)
                      ++|+|||+++++++. .++.|.+||+.+++.+...+.        ..+..++|+|||++|++++...     .+ ..++.
T Consensus        48 ~~~s~dg~~~~v~~~-~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  126 (349)
T 1jmx_B           48 AMMAPDNRTAYVLNN-HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR  126 (349)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             eEECCCCCEEEEEeC-CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe
Confidence            479999998766653 479999999999887655432        1278899999999999988310     00 01478


Q ss_pred             EEEEeec-CcEE---Eec-cCCcEEEEEEeeCCCeeeecCc
Q psy5876          67 YWQWSFQ-GKII---KRF-NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        67 i~iW~~~-g~~l---~~~-~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +.+||+. |+..   ... ....+.+++|+|+|+ ++..+.
T Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~  166 (349)
T 1jmx_B          127 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP  166 (349)
T ss_dssp             EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS
T ss_pred             EEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC
Confidence            9999995 3322   222 244688899999999 554443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.17  E-value=4.4e-10  Score=88.42  Aligned_cols=96  Identities=13%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceEE--eeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSVM--NAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~--~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|||||++|++++. .++.|.+||++ +++..  ....    ...+..++|||||+++++++.     .++.+.+|+++
T Consensus       150 ~~~spdG~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~-----~~~~v~v~~~~  223 (365)
T 1jof_A          150 MVFDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-----AGNRICEYVID  223 (365)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-----TTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEcC-CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC-----CCCeEEEEEEe
Confidence            479999999988875 36799999998 66542  2221    346899999999999988874     47889999874


Q ss_pred             ---CcEEE------eccC-----C-------cEEEEE-EeeCCCeeeecCc
Q psy5876          74 ---GKIIK------RFNS-----P-------TFCQLR-WRPRPASLLSKEQ  102 (143)
Q Consensus        74 ---g~~l~------~~~~-----~-------~v~~l~-wsP~~~~l~s~s~  102 (143)
                         |++..      ....     .       .+..++ |+|||+.|+.+..
T Consensus       224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence               65421      1211     2       488999 9999998876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.16  E-value=5.3e-11  Score=101.45  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             CeEecCCCEEEEEecC---CCCeEEEEECCCceEE-ee-eccCceEEEEECCCCCEEEEeecCcc-------eecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELR---DTGSLEFVDTGDFSVM-NA-AEHHQATDVEWDPTGRYVMSGVSLWK-------TKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~-~~-~~~~~v~~i~wsPdG~~lat~s~~~~-------~~~D~~i~   68 (143)
                      ++|||||++||.+...   .+.+|++||+.+++.+ .. .+......++|||||+.|+.++....       ......|+
T Consensus       126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence            3799999999954321   3468999999998765 21 11122378999999999999884110       00012399


Q ss_pred             EEeec-Cc----EEEecc--CCcEEEEEEeeCCCeeeecCchh
Q psy5876          69 QWSFQ-GK----IIKRFN--SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        69 iW~~~-g~----~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      +|++. +.    ++....  ...+..+.|+|||+.|+..+.+.
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  248 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG  248 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence            99984 33    455443  34788999999999998776554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.15  E-value=1.9e-10  Score=98.19  Aligned_cols=101  Identities=8%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             CeEecCCCEEEEEecCCCC----eEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCcce----------ecCC
Q psy5876           1 MKLRMRGTHIVLAELRDTG----SLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKT----------KADT   65 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg----~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~----------~~D~   65 (143)
                      ++|||||++||.+.. ..|    +|++||+.+++.+.. .++..+..++|||||+.|+.++....-          ....
T Consensus       130 ~~~SPDg~~la~~~~-~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLS-ASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (710)
T ss_dssp             EEECTTSSEEEEEEE-ETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             EEECCCCCEEEEEEc-CCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence            379999999998753 123    899999999886642 333346789999999999998842100          0012


Q ss_pred             cEEEEeec-Cc----EEEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876          66 GYWQWSFQ-GK----IIKRFN--SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        66 ~i~iW~~~-g~----~l~~~~--~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .|++|++. +.    ++....  ...+..+.|+|||+.|+..+.
T Consensus       209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            38999984 33    344432  345789999999999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.14  E-value=1.5e-10  Score=89.17  Aligned_cols=102  Identities=14%  Similarity=0.299  Sum_probs=66.9

Q ss_pred             CeEecCCCEEEEEecCC-CC--eEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc------------e----
Q psy5876           1 MKLRMRGTHIVLAELRD-TG--SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK------------T----   61 (143)
Q Consensus         1 i~~SPdG~~las~~~~~-dg--~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~------------~----   61 (143)
                      ++|||||++||.++... ++  .|.+||+.+++.........+..++|||||++|+.++....            +    
T Consensus        64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence            37999999999876311 13  47778888776543322222999999999999998873200            0    


Q ss_pred             -----ecCCcEEEEeecCcEE-EeccCCcEEEEEEeeCCCeeeecCch
Q psy5876          62 -----KADTGYWQWSFQGKII-KRFNSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        62 -----~~D~~i~iW~~~g~~l-~~~~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                           .....+++|++.+... .......+..++|+|+| .++++..+
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECC
T ss_pred             cccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecc
Confidence                 0124688899964332 33211277889999999 77776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.12  E-value=2.1e-10  Score=96.16  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=71.7

Q ss_pred             CeEecCCCEEEEEecCCC----------CeEEEEECCC------ceEEeee--ccCceEEEEECCCCCEEEEeecCcc-e
Q psy5876           1 MKLRMRGTHIVLAELRDT----------GSLEFVDTGD------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWK-T   61 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d----------g~i~iWd~~~------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~-~   61 (143)
                      ++|||||++|+.++.  +          ..|.+||+++      ++.....  ++..+..++|||||++||.++.... .
T Consensus       135 ~~~spDg~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~  212 (662)
T 3azo_A          135 PVLLPERGEVWCMAE--EFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM  212 (662)
T ss_dssp             EEEETTTTEEEEEEE--EECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred             cEECCCCCEEEEEEe--cccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence            479999999998873  4          5899999887      5433222  2356788999999999998873210 0


Q ss_pred             e-cCCcEEEEeecC-c---EEEec---cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          62 K-ADTGYWQWSFQG-K---IIKRF---NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        62 ~-~D~~i~iW~~~g-~---~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      . ....+++|++++ .   .....   +...+..++|+|||+.+++...++
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTS
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCC
Confidence            0 124799999973 2   22222   246799999999999777776665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.05  E-value=1.6e-09  Score=85.14  Aligned_cols=101  Identities=13%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             CeEecCCCE--EEEEe------cC-----CCCeEEEEECC-CceEEeee------ccCceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTH--IVLAE------LR-----DTGSLEFVDTG-DFSVMNAA------EHHQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~--las~~------~~-----~dg~i~iWd~~-~~~~~~~~------~~~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      ++|||||++  +++++      .+     .+|++.+|+++ ++++....      +...+..++|||||++|+++..   
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~---  164 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL---  164 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC---
Confidence            468999995  44542      10     27899999987 45543221      2346899999999999987763   


Q ss_pred             eecCCcEEEEeec--CcEE--Eecc----CCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876          61 TKADTGYWQWSFQ--GKII--KRFN----SPTFCQLRWRPRPASLLSKEQ-VDKI  106 (143)
Q Consensus        61 ~~~D~~i~iW~~~--g~~l--~~~~----~~~v~~l~wsP~~~~l~s~s~-d~~i  106 (143)
                        .++.|++|+++  |++.  ....    .....+++|+|+|+.|+..++ +..|
T Consensus       165 --~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  217 (365)
T 1jof_A          165 --TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             --TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             --CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence              46789999995  6542  2221    456899999999998876553 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.02  E-value=6.4e-10  Score=98.70  Aligned_cols=94  Identities=7%  Similarity=-0.001  Sum_probs=73.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEE-EEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLE-FVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~-iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|| ||+.|+.++  .++.+. +||..+++......+ ..+..++|||||++||+++      .++.+++||+. |+..
T Consensus       343 ~~~s-dg~~l~~~s--~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~------~~~~v~~~d~~tg~~~  413 (1045)
T 1k32_A          343 RGGD-TKVAFIHGT--REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN------DRFEIMTVDLETGKPT  413 (1045)
T ss_dssp             ECSS-SEEEEEEEE--TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             eeEc-CCCeEEEEE--CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC------CCCeEEEEECCCCceE
Confidence            3689 999999988  467888 889887654332233 5789999999999999998      58899999995 5544


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ...  +...+.+++|+|||+.|++++.+
T Consensus       414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          414 VIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             EEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             EeccCCCCCccceEECCCCCeEEEEecC
Confidence            333  45678999999999999987664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.98  E-value=4.7e-09  Score=81.76  Aligned_cols=92  Identities=7%  Similarity=-0.040  Sum_probs=66.0

Q ss_pred             eEecCCCEEEEEecCCCC--eEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      +|||||++||.++. .+|  .|.+||+.+++.......  ..+..++|||||++|+.++      .+..+++||+. |+.
T Consensus        42 ~~SpDg~~l~~~~~-~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~------~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           42 CFTRDGSKLLFGGA-FDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK------DGRNLMRVDLATLEE  114 (388)
T ss_dssp             CBCTTSCEEEEEEC-TTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE------TTTEEEEEETTTCCE
T ss_pred             cCCCCCCEEEEEEc-CCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe------CCCeEEEEECCCCcc
Confidence            69999999999884 256  488889988876554332  2344678999999999999      47789999996 443


Q ss_pred             E--EeccCCcEEEEE--EeeCCCeeeec
Q psy5876          77 I--KRFNSPTFCQLR--WRPRPASLLSK  100 (143)
Q Consensus        77 l--~~~~~~~v~~l~--wsP~~~~l~s~  100 (143)
                      .  ...+...+....  ++|++..++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~  142 (388)
T 3pe7_A          115 NVVYQVPAEWVGYGTWVANSDCTKLVGI  142 (388)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred             eeeeechhhcccccceeECCCCCeeccc
Confidence            3  333344444444  48999988754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.97  E-value=1.5e-09  Score=82.21  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeeecc-C---ceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAAEH-H---QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-   81 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~---~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-   81 (143)
                      ++|++++  .++.|.+||..+++.+..... .   .+..++|+|||++++.++.     .++.+.+||+ +|+.+.... 
T Consensus         2 ~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~-----~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPA--RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN-----KSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEE--TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET-----TTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcC--CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC-----CCCeEEEEECCCCCeEeeEEc
Confidence            4788887  589999999999888776542 3   4889999999998766553     4789999999 467665443 


Q ss_pred             CC------cEEEEEEeeCCCeeeecC
Q psy5876          82 SP------TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        82 ~~------~v~~l~wsP~~~~l~s~s  101 (143)
                      ..      .+..++|+|+|+.|+.+.
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CCcccccccccceEECCCCCEEEEEe
Confidence            22      567899999999888774

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.92  E-value=1.2e-08  Score=80.80  Aligned_cols=87  Identities=10%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             CeEecCCCEEEEEec-C--------CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAEL-R--------DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~-~--------~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|+|||+++.++.. +        ..++|.+||+.+++.+.+.+ +. +..++|||||++|++++      . +.+.+|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n------~-~~v~v~  330 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD------G-GNVNVY  330 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC------S-SCEEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC------C-CeEEEE
Confidence            368999898877642 0        13489999999999888764 34 99999999999999877      3 899999


Q ss_pred             ee-cC--cEEEec-c-CCcEEEEEEeeCCC
Q psy5876          71 SF-QG--KIIKRF-N-SPTFCQLRWRPRPA   95 (143)
Q Consensus        71 ~~-~g--~~l~~~-~-~~~v~~l~wsP~~~   95 (143)
                      |. +|  +.+... . ...-..++++|+|.
T Consensus       331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            98 57  777774 3 45678899999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.91  E-value=2.1e-09  Score=90.03  Aligned_cols=100  Identities=10%  Similarity=0.026  Sum_probs=66.5

Q ss_pred             ecCCCE-EEEEecCCCCeEEEEECC--C-ceE--Eeee----ccCceEEEEECCCCCEEEEeecCcce----ecCCcEEE
Q psy5876           4 RMRGTH-IVLAELRDTGSLEFVDTG--D-FSV--MNAA----EHHQATDVEWDPTGRYVMSGVSLWKT----KADTGYWQ   69 (143)
Q Consensus         4 SPdG~~-las~~~~~dg~i~iWd~~--~-~~~--~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~----~~D~~i~i   69 (143)
                      ||||++ |+.++. .+..|.+++++  . ++.  +...    +...+..++|||||++|++++....-    .....+++
T Consensus        87 SPDg~~~la~~~~-~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           87 RPAGGPLLVFTHF-GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             CSSSSCEEEEEBT-TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             ecCCCeEEEEEEC-CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence            399999 887763 35677777776  2 332  2221    22457899999999999998842000    01157889


Q ss_pred             EeecC------cEEEec---cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          70 WSFQG------KIIKRF---NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        70 W~~~g------~~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      |++++      ..+...   ....+..++|+|||+.|+..+.+.
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            99976      433322   245688899999999999776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.90  E-value=3e-09  Score=82.65  Aligned_cols=102  Identities=8%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             CeEecCCCEEEEEecC-CC--CeEEEEECCCceEEeeeccCceEEEEECC-CCCEEEEeecCc----------ceecCCc
Q psy5876           1 MKLRMRGTHIVLAELR-DT--GSLEFVDTGDFSVMNAAEHHQATDVEWDP-TGRYVMSGVSLW----------KTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~d--g~i~iWd~~~~~~~~~~~~~~v~~i~wsP-dG~~lat~s~~~----------~~~~D~~   66 (143)
                      ++|||||++|+.++.. ..  +.|.+||+.+++........... ++|+| ||+++++++...          ....+..
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            3799999998887531 11  45999999877543322222334 89999 999988765310          0013468


Q ss_pred             EEEEeecCcEEEec--cCC-----------cEEEEEEeeCCCeeeecCch
Q psy5876          67 YWQWSFQGKIIKRF--NSP-----------TFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        67 i~iW~~~g~~l~~~--~~~-----------~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +++||+.+..+...  +..           .+..++|+|+|+.|+..+..
T Consensus       322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence            99999964432222  122           25668999999999877653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.89  E-value=1.5e-08  Score=76.24  Aligned_cols=96  Identities=5%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCC-cEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADT-GYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~-~i~iW~~~g~   75 (143)
                      |+++|+|+.+++..  .++.|.+||.+. +.+..+.    ...+..++++|+|+++++..      .++ .|.+|+.+|+
T Consensus       169 i~~~~~g~l~v~~~--~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~------~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          169 VVVNDKQEIFISDN--RAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADN------HNNFNLTIFTQDGQ  239 (286)
T ss_dssp             EEECSSSEEEEEEG--GGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEEC------SSSCEEEEECTTSC
T ss_pred             EEECCCCCEEEEEC--CCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeC------CCCEEEEEECCCCC
Confidence            47899999777765  478999999754 4444432    14689999999999888877      465 8999999998


Q ss_pred             EEEecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          76 IIKRFN----SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        76 ~l~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .+....    .....++++.|+|+.+++. .+..|
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~~~v  273 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVLAS-KDYRL  273 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEE
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEEEC-CCCeE
Confidence            776543    2347899999999988884 45544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.84  E-value=1e-08  Score=88.08  Aligned_cols=101  Identities=7%  Similarity=0.016  Sum_probs=68.5

Q ss_pred             CeEecCCCEEEEEecCCC----CeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcce--------ecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDT----GSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKT--------KADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d----g~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~--------~~D~~i   67 (143)
                      ++|||||++||.+.. ..    .+|++||+.+++.+... +...+..++|||| +.|+.++.....        .....+
T Consensus       168 ~~~SPDG~~la~~~~-~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          168 WAASDDGRLLAYSVQ-DGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEECTTSSEEEEEEE-ETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred             EEECCCCCEEEEEEc-CCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence            379999999998763 12    36999999998875432 1122368999999 999888742110        002248


Q ss_pred             EEEeec-Cc----EEEeccC--CcEEEEEEeeCCCeeeecCch
Q psy5876          68 WQWSFQ-GK----IIKRFNS--PTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        68 ~iW~~~-g~----~l~~~~~--~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ++|++. +.    ++.....  ..+..+.|+|||+.|+..+.+
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  288 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE  288 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc
Confidence            889883 32    4444332  358899999999998876644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.84  E-value=9.2e-09  Score=81.52  Aligned_cols=89  Identities=9%  Similarity=0.101  Sum_probs=62.2

Q ss_pred             CeEecCCCEEEEEec-------C-CCCeEEEEECCCceEEeeec--------cCceEEEEECCCCCEEEEeecCcceecC
Q psy5876           1 MKLRMRGTHIVLAEL-------R-DTGSLEFVDTGDFSVMNAAE--------HHQATDVEWDPTGRYVMSGVSLWKTKAD   64 (143)
Q Consensus         1 i~~SPdG~~las~~~-------~-~dg~i~iWd~~~~~~~~~~~--------~~~v~~i~wsPdG~~lat~s~~~~~~~D   64 (143)
                      ++|||||++|.+++.       + .+++|.+||+.+++.+.+..        ......+++||||++|+++...    .+
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~  130 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PA  130 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SS
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CC
Confidence            579999999999862       0 25679999999888766542        1246689999999999988731    25


Q ss_pred             CcEEEEeec-CcEEEe-ccCCcEEEEEEeeC
Q psy5876          65 TGYWQWSFQ-GKIIKR-FNSPTFCQLRWRPR   93 (143)
Q Consensus        65 ~~i~iW~~~-g~~l~~-~~~~~v~~l~wsP~   93 (143)
                      +.|.+||.. ++.+.. ........+.+.|+
T Consensus       131 ~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~  161 (361)
T 2oiz_A          131 TSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN  161 (361)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTTEEEEEECTT
T ss_pred             CeEEEEECCCCcEEEEEecCCCcceeEEcCC
Confidence            789999995 666666 54333333333443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.83  E-value=3.4e-08  Score=76.87  Aligned_cols=100  Identities=9%  Similarity=-0.061  Sum_probs=68.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eeccCceEEEE--ECCCCCEEEEeecCc----------------c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEHHQATDVE--WDPTGRYVMSGVSLW----------------K   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~~~v~~i~--wsPdG~~lat~s~~~----------------~   60 (143)
                      ++|||||++|+.++  .++.|.+||+.+++...  ..+...+....  ++|||++++......                .
T Consensus        86 ~~~spdg~~l~~~~--~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           86 GFLSPDDDALFYVK--DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             CEECTTSSEEEEEE--TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             eEEcCCCCEEEEEe--CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            37999999999998  47899999999876543  33333344444  499999998543110                0


Q ss_pred             eecCCcEEEEeecCcEEEec--cCCcEEEEEEee-CCCeeeecCc
Q psy5876          61 TKADTGYWQWSFQGKIIKRF--NSPTFCQLRWRP-RPASLLSKEQ  102 (143)
Q Consensus        61 ~~~D~~i~iW~~~g~~l~~~--~~~~v~~l~wsP-~~~~l~s~s~  102 (143)
                      ...+..+.+||+.+..+...  ....+..++|+| ||+.|+..+.
T Consensus       164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred             cCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEe
Confidence            11346788999864333322  355789999999 9999886654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.76  E-value=3.3e-08  Score=76.73  Aligned_cols=69  Identities=6%  Similarity=-0.029  Sum_probs=50.0

Q ss_pred             CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeecc-Cce-EEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEH-HQA-TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~-~~v-~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      ++|||||++|+.+... .+..|.+||+.+++......+ ... ..+.|||||++|+.++      .++.+++|++.+.
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~------~~~~l~~~d~~~~  112 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK------NELNLMKVDLETL  112 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE------TTTEEEEEETTTC
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE------cCCcEEEEECCCC
Confidence            4699999999887531 124788899988775443322 232 3378999999999998      4668999999643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.76  E-value=1e-07  Score=73.04  Aligned_cols=94  Identities=9%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecC----CcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKAD----TGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D----~~i~iW~~~g   74 (143)
                      ++|+|+|+.++++.  .++.|.+||.++++.....  ....+.+++|+|||+++++..      .+    +++.+||.++
T Consensus        50 ~~~~~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~------~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           50 LNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL------GDFKSTGGIFAATENG  121 (333)
T ss_dssp             EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC------TTSSSCCEEEEECTTS
T ss_pred             cEECCCCCEEEEEC--CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeC------CCCCCCceEEEEeCCC
Confidence            47899999777776  4789999999877654322  235799999999999888776      24    6899999976


Q ss_pred             cEEE-ec----cCCcEEEEEEeeCCCeeeecCc
Q psy5876          75 KIIK-RF----NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        75 ~~l~-~~----~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..+. ..    ....+.++++.|+|..+++...
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            5432 11    2357999999999998887653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.75  E-value=6.2e-08  Score=75.22  Aligned_cols=99  Identities=12%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             CeEecCCCEEEEEecCCC------------------------CeEEEEECCCceEEeeec---cCceEEEEECCCCCEEE
Q psy5876           1 MKLRMRGTHIVLAELRDT------------------------GSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVM   53 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d------------------------g~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~la   53 (143)
                      |+++|+|+++++..  .+                        ++|.+||..+++.+....   ......++++|+|+.++
T Consensus        29 va~d~~G~l~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v  106 (329)
T 3fvz_A           29 VALDSKNNLVIFHR--GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWV  106 (329)
T ss_dssp             EEECTTCCEEEEEC--TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEE
T ss_pred             EEECCCCCEEEEeC--CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEE
Confidence            57899999998876  24                        479999999888776553   23689999999999888


Q ss_pred             EeecCcceecCCcEEEEeecCc--EEEecc-----------CCcEEEEEEee-CCCeeeecC-chhhHH
Q psy5876          54 SGVSLWKTKADTGYWQWSFQGK--IIKRFN-----------SPTFCQLRWRP-RPASLLSKE-QVDKIK  107 (143)
Q Consensus        54 t~s~~~~~~~D~~i~iW~~~g~--~l~~~~-----------~~~v~~l~wsP-~~~~l~s~s-~d~~i~  107 (143)
                      +.+      .++.|++|+.+|+  .+....           ......+++.| ++..+++.+ .+..|+
T Consensus       107 ~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A          107 TDV------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             EET------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             EEC------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            777      5789999999887  444321           23588999999 899999986 455554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.75  E-value=1.1e-07  Score=71.52  Aligned_cols=97  Identities=9%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      |+++|+|+.+++..  .++.|.+||.+. +.+..+.    ...+..++++|+|+.+++.+      .++.|++|+.+|+.
T Consensus       126 i~~~~~g~l~v~~~--~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          126 VTVDNKGRIIVVEC--KVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN------RAHCVKVFNYEGQY  196 (286)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEG------GGTEEEEEETTCCE
T ss_pred             EEEeCCCCEEEEEC--CCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEEC------CCCEEEEEcCCCCE
Confidence            46899999777765  478999999653 4444331    23589999999999887776      57899999999987


Q ss_pred             EEecc----CCcEEEEEEeeCCCeeeecCchh-hH
Q psy5876          77 IKRFN----SPTFCQLRWRPRPASLLSKEQVD-KI  106 (143)
Q Consensus        77 l~~~~----~~~v~~l~wsP~~~~l~s~s~d~-~i  106 (143)
                      +....    ......+++.|+|..+++...+. .|
T Consensus       197 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          197 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            76653    25688999999999998887654 44

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.73  E-value=1.1e-07  Score=72.15  Aligned_cols=93  Identities=6%  Similarity=-0.114  Sum_probs=68.5

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      ++|+|+|+ .++++.  .++.|..||.+++......+...+..++++|||+++++..      .++++.+||. +|+...
T Consensus        33 ~~~d~~g~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~------~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           33 PVYVPARSAVIFSDV--RQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSH------GLRRLERQREPGGEWES  104 (296)
T ss_dssp             EEEEGGGTEEEEEEG--GGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEET------TTTEEEEECSTTCCEEE
T ss_pred             CeEeCCCCEEEEEeC--CCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEec------CCCeEEEEcCCCCcEEE
Confidence            47999999 555555  4789999999886222222345689999999999887766      4688999999 677433


Q ss_pred             ecc------CCcEEEEEEeeCCCeeeecC
Q psy5876          79 RFN------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        79 ~~~------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ...      ...++++++.|+|..++|.+
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~  133 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDP  133 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEEC
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECC
Confidence            211      23567899999999999843

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.72  E-value=4.8e-08  Score=75.04  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             CCCEEEEEecC-------CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           6 RGTHIVLAELR-------DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         6 dG~~las~~~~-------~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ||++||.....       .++.|.+||+.+++....   ..+..++|||||++||..+.... .....+++|++.+....
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~-~~~~~l~~~~~~~g~~~   98 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEE-KKVSEIWVADLETLSSK   98 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETT-TTEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccC-CCcceEEEEECCCCceE
Confidence            89988875210       146899999988754322   46788999999999999874100 00123777888654333


Q ss_pred             e-cc-CCcEEEEEEeeCCCeeeecCch
Q psy5876          79 R-FN-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        79 ~-~~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      . .. .. +..++|+|||+.|+..+.+
T Consensus        99 ~l~~~~~-~~~~~wspdg~~l~~~~~~  124 (347)
T 2gop_A           99 KILEAKN-IRSLEWNEDSRKLLIVGFK  124 (347)
T ss_dssp             EEEEESE-EEEEEECTTSSEEEEEEEC
T ss_pred             EEEcCCC-ccceeECCCCCEEEEEEcc
Confidence            2 22 33 9999999999999987643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.71  E-value=3.5e-08  Score=74.83  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=72.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceE---Eeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSV---MNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~---~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      ++|+|||+.|++.+  .++.|.+||++ +++.   ...+  ....+..++++|+|+.+++.        +++|.+|+.+|
T Consensus       177 i~~s~dg~~lv~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--------~~~v~~~~~~g  246 (296)
T 3e5z_A          177 LAFLPSGNLLVSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--------GDGVHVLTPDG  246 (296)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--------TTEEEEECTTS
T ss_pred             EEECCCCCEEEEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--------CCeEEEECCCC
Confidence            47999999995554  47899999986 4443   1222  22356789999999976654        35899999999


Q ss_pred             cEEEecc-CCcEEEEEE-eeCCCeeeecCchhhHHhhhh
Q psy5876          75 KIIKRFN-SPTFCQLRW-RPRPASLLSKEQVDKIKKSLK  111 (143)
Q Consensus        75 ~~l~~~~-~~~v~~l~w-sP~~~~l~s~s~d~~i~~~~~  111 (143)
                      +.+.... ...+.+++| .|++..|..++.++..+-+.+
T Consensus       247 ~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~  285 (296)
T 3e5z_A          247 DELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETN  285 (296)
T ss_dssp             CEEEEEECSSCCCEEEEESTTSCEEEEEETTEEEEEECS
T ss_pred             CEEEEEECCCCceeEEEECCCCCEEEEEcCCeEEEEEcc
Confidence            9877653 223889999 589998888777766654444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.69  E-value=1.1e-07  Score=72.98  Aligned_cols=88  Identities=10%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN   81 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~   81 (143)
                      ..|+.|++++  .++.|.+||..+++.+-++..   ..+.+++++|+|++|++ .       ++++..||.+|+.+.++.
T Consensus         3 ~~~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs-~-------~~~V~~~d~~G~~~W~~~   72 (276)
T 3no2_A            3 SPQHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS-Y-------SKGAKMITRDGRELWNIA   72 (276)
T ss_dssp             CCCEEEEECT--TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE-C-------BSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEeeC--CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe-C-------CCCEEEECCCCCEEEEEc
Confidence            3457888887  589999999999998877643   35889999999999983 2       568999999999887764


Q ss_pred             C---CcEEEEEEeeCCCeeeecCc
Q psy5876          82 S---PTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        82 ~---~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .   ..+.++.+.|+|..+++.+.
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~   96 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCG   96 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEES
T ss_pred             CCCCccccccEECCCCCEEEEecC
Confidence            2   47889999999999998765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.64  E-value=2.4e-07  Score=78.93  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             CeEecCCCEEEEEecCCCCe----------------EEEEECCCce----EEeeec-c-CceEEEEECCCCCEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGS----------------LEFVDTGDFS----VMNAAE-H-HQATDVEWDPTGRYVMSGVSL   58 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~----------------i~iWd~~~~~----~~~~~~-~-~~v~~i~wsPdG~~lat~s~~   58 (143)
                      ++|||||+.|+.++.  ++.                |.+|++.+++    ++.... + ..+..++|||||++|+.++..
T Consensus       176 ~~wspDg~~l~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          176 MAWTHDGKGMFYNAY--PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             EEECTTSSEEEEEEC--CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEeCCCEEEEEEE--CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence            479999999999874  443                9999998764    343332 2 347899999999999988731


Q ss_pred             cceecCCcEEEEeecC-------c-EEEec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876          59 WKTKADTGYWQWSFQG-------K-IIKRF--NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        59 ~~~~~D~~i~iW~~~g-------~-~l~~~--~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .. ..++.+++||+++       . .+...  +...+.. .|+|+|..|+-.+.
T Consensus       254 ~~-~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          254 GC-DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             SS-SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred             cC-CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence            10 0156899999963       2 22222  2333443 58999998875544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.60  E-value=1e-07  Score=73.99  Aligned_cols=104  Identities=11%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcce-ecCCcEEEEee-c
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKT-KADTGYWQWSF-Q   73 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~-~~D~~i~iW~~-~   73 (143)
                      |+++|+ |+.+++..  .++.|++||.++++.+..+.    ...+..++|+| |..+++.+..+.. ..++.+++|+. +
T Consensus       201 ia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          201 LALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             EEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence            578999 55555544  47899999999888777652    24688999999 5555544422111 13568999997 5


Q ss_pred             CcEEEecc-----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKRFN-----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |+.+..+.     ......++++|+|..+++...+..|+
T Consensus       278 g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          278 GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            88877642     45689999999998888888777664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.59  E-value=3.6e-07  Score=74.27  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             EEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE---Eec------
Q psy5876          10 IVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII---KRF------   80 (143)
Q Consensus        10 las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l---~~~------   80 (143)
                      +|+++  .||.|.+||+.++.... . ...|++++|||+|  ++.|.      .|+.+++|+.++..+   ...      
T Consensus       139 ~av~~--~dG~L~v~dl~~~~~~~-~-~~~Vs~v~WSpkG--~~vg~------~dg~i~~~~~~~~~~~~k~~I~~Pp~~  206 (388)
T 1xip_A          139 LVILN--SVNDLSALDLRTKSTKQ-L-AQNVTSFDVTNSQ--LAVLL------KDRSFQSFAWRNGEMEKQFEFSLPSEL  206 (388)
T ss_dssp             EEEEE--TTSEEEEEETTTCCEEE-E-EESEEEEEECSSE--EEEEE------TTSCEEEEEEETTEEEEEEEECCCHHH
T ss_pred             EEEEE--CCCCEEEEEccCCcccc-c-cCCceEEEEcCCc--eEEEE------cCCcEEEEcCCCccccccceecCCccc
Confidence            77776  59999999999776543 2 3589999999999  56666      589999999987764   222      


Q ss_pred             -----cCCcEEEEEEeeCCCeeeec
Q psy5876          81 -----NSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        81 -----~~~~v~~l~wsP~~~~l~s~  100 (143)
                           +...|.++.|.++++.+++-
T Consensus       207 ~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          207 EELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             HTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccccCCCeeEEEEEEecCCeEEEEE
Confidence                 24579999999999999973

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.58  E-value=3.9e-07  Score=69.73  Aligned_cols=94  Identities=11%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-ceEE--------eeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVM--------NAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~--------~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|+|||++|..+.. .++.|.+||..+ ++.+        ..+. +..+..++++|+|+.+++..      .+++|.+|
T Consensus       187 i~~~~dg~~l~v~~~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~------~~~~v~~~  259 (333)
T 2dg1_A          187 IALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY------GQGRVLVF  259 (333)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE------TTTEEEEE
T ss_pred             eEECCCCCEEEEEeC-CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc------CCCEEEEE
Confidence            478999997766543 368999999853 2211        1111 23578899999999888776      47889999


Q ss_pred             eecCcEEEecc--CC------cEEEEEEeeCCCeeeecC
Q psy5876          71 SFQGKIIKRFN--SP------TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        71 ~~~g~~l~~~~--~~------~v~~l~wsP~~~~l~s~s  101 (143)
                      |.+|+.+....  ..      .+.+++|+|++..|..++
T Consensus       260 d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          260 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence            99888776543  21      588999999987775433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.58  E-value=1.1e-07  Score=81.32  Aligned_cols=97  Identities=6%  Similarity=0.050  Sum_probs=64.5

Q ss_pred             CeEecCCCEEEEEecC---CCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCcc-------eecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWK-------TKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~-------~~~D~~i~i   69 (143)
                      ++|||||++||-+...   .+.+|++||+.+++.+.. .+......++|+ ||+.|+.++....       ......|++
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~  212 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF  212 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence            3799999999964321   235899999999886543 221123678999 9999998884210       001234888


Q ss_pred             Eeec-C----cEEEeccC---CcEEEEEEeeCCCeee
Q psy5876          70 WSFQ-G----KIIKRFNS---PTFCQLRWRPRPASLL   98 (143)
Q Consensus        70 W~~~-g----~~l~~~~~---~~v~~l~wsP~~~~l~   98 (143)
                      |++. +    .++.....   ..+.++.|+|||+.|+
T Consensus       213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            9883 2    24554322   3578899999999885

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.53  E-value=7.1e-07  Score=75.48  Aligned_cols=88  Identities=8%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee---cCcEEEecc-CC
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF---QGKIIKRFN-SP   83 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~---~g~~l~~~~-~~   83 (143)
                      +++++.. .+++|.++|..+++.+.+... ..+..+.+||||+++.+++      .|+.+.+||+   +++.+.+.. ..
T Consensus       168 ~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~------~dg~V~viD~~~~t~~~v~~i~~G~  240 (567)
T 1qks_A          168 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG------RDGKVNMIDLWMKEPTTVAEIKIGS  240 (567)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE------TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             eEEEEeC-CCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc------CCCeEEEEECCCCCCcEeEEEecCC
Confidence            4444443 589999999999988877643 4577999999999999988      5889999999   566776654 34


Q ss_pred             cEEEEEEe----eCCCeeeecCch
Q psy5876          84 TFCQLRWR----PRPASLLSKEQV  103 (143)
Q Consensus        84 ~v~~l~ws----P~~~~l~s~s~d  103 (143)
                      .-..++|+    |||++++.+.+.
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCceeEEccccCCCCCEEEEEEcc
Confidence            56799999    799988876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.52  E-value=4.8e-07  Score=76.98  Aligned_cols=94  Identities=6%  Similarity=-0.036  Sum_probs=59.8

Q ss_pred             CeEecCCCEEEEEecCCCCe-------------EEEEECCCce----EEeeec-c-CceEEEEECCCCCEEEEeecCcce
Q psy5876           1 MKLRMRGTHIVLAELRDTGS-------------LEFVDTGDFS----VMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKT   61 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~-------------i~iWd~~~~~----~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~   61 (143)
                      ++|||||+.|+.++.  |..             |.+|++.+++    ++.... + ..+..++|||||++|+.++.... 
T Consensus       173 ~~wspDg~~l~~~~~--d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-  249 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWL--PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-  249 (695)
T ss_dssp             CEECTTSSEEEEEEC--CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred             eEEecCCCEEEEEEe--cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence            589999999999884  444             9999998754    444432 2 36889999999999988873100 


Q ss_pred             ecCCcEEEEeec-CcEEE-eccCCcEEEEEEeeCCCeeee
Q psy5876          62 KADTGYWQWSFQ-GKIIK-RFNSPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        62 ~~D~~i~iW~~~-g~~l~-~~~~~~v~~l~wsP~~~~l~s   99 (143)
                       ..+.+++|+.. |.... ..+...+....| |+|..++.
T Consensus       250 -~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~  287 (695)
T 2bkl_A          250 -SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVL  287 (695)
T ss_dssp             -TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEE
T ss_pred             -CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEE
Confidence             01256667663 33222 123344555566 66764343

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.51  E-value=9.6e-07  Score=65.35  Aligned_cols=99  Identities=7%  Similarity=0.005  Sum_probs=74.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee-ecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-AEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |+++|+|+.+++..  .++.|.+||.++...... ... ..+..++++|+|+.+++..      .++.|.+|+.+|....
T Consensus       155 i~~~~~g~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~------~~~~v~~~~~~~~~~~  226 (270)
T 1rwi_B          155 VAVDNSGNVYVTDT--DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH------NTNQVVKLLAGSTTST  226 (270)
T ss_dssp             EEECTTCCEEEEEG--GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET------TTSCEEEECTTCSCCE
T ss_pred             EEEeCCCCEEEEEC--CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC------CCCcEEEEcCCCCcce
Confidence            46889999776654  368999999887654432 222 5689999999998777666      4778999999876543


Q ss_pred             ecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...   ......+++.|+|..+++...++.|+
T Consensus       227 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          227 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             eeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            332   35689999999999888887777664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.50  E-value=3.1e-07  Score=74.63  Aligned_cols=90  Identities=6%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      |+|  ||++|+++.   +|.|++||+.+.......  ....+.++.+.+..  +|+++      .|+.+.+||+. ++..
T Consensus        93 l~f--d~~~L~v~~---~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~------~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A           93 VCF--HGDQVLVST---RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN------SVNDLSALDLRTKSTK  159 (388)
T ss_dssp             EEE--ETTEEEEEE---SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEE--CCCEEEEEc---CCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE------CCCCEEEEEccCCccc
Confidence            467  999999994   799999998865432222  12467788777653  77777      59999999996 5554


Q ss_pred             EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  ....|.+++|+|+|  ++.+..|++++
T Consensus       160 ~--~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          160 Q--LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             E--EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             c--ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            3  34589999999999  56677777664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.49  E-value=2e-06  Score=72.68  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeeec-cCceEEEEEC----CCCCEEEEeecCcceecCCcEEEEee-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAAE-HHQATDVEWD----PTGRYVMSGVSLWKTKADTGYWQWSF-   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~~-~~~v~~i~ws----PdG~~lat~s~~~~~~~D~~i~iW~~-   72 (143)
                      +.|||||++|.+++  .+|.|.+||+.  +++.+.+.. ......++||    |||++++++..     .++.+.|+|. 
T Consensus       202 v~~SpDGr~lyv~~--~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~-----~~~~v~ViD~~  274 (567)
T 1qks_A          202 SRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY-----WPPQYVIMDGE  274 (567)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----ETTEEEEEETT
T ss_pred             eEECCCCCEEEEEc--CCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc-----cCCeEEEEECC
Confidence            47899999999988  58999999995  777776654 3457899999    79999998885     5789999998 


Q ss_pred             cCcEEEecc-------------CCcEEEEEEeeCCCeee-ecCchhh
Q psy5876          73 QGKIIKRFN-------------SPTFCQLRWRPRPASLL-SKEQVDK  105 (143)
Q Consensus        73 ~g~~l~~~~-------------~~~v~~l~wsP~~~~l~-s~s~d~~  105 (143)
                      +.+.+....             ...+..+..+|+++.++ +..+.++
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            466665432             12577888888865433 4333333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.45  E-value=5.6e-06  Score=64.25  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--Cc-e-----EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DF-S-----VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~-~-----~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|+|||+.|..+.. .++.|.+||.+  ++ +     .+..+.  ......++++++|++.++..      .+++|.+|
T Consensus       184 i~~s~dg~~lyv~~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~------~~~~v~~~  256 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW------GEGAVDRY  256 (326)
T ss_dssp             EEECTTSCEEEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE------TTTEEEEE
T ss_pred             eEEcCCCCEEEEEEC-CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe------CCCEEEEE
Confidence            479999998876653 36899999975  55 2     232322  23568899999999877765      36789999


Q ss_pred             eecCcEEEecc--CCcEEEEEEe-eCCCeeee
Q psy5876          71 SFQGKIIKRFN--SPTFCQLRWR-PRPASLLS   99 (143)
Q Consensus        71 ~~~g~~l~~~~--~~~v~~l~ws-P~~~~l~s   99 (143)
                      +.+|+.+....  ...+.+++|. |++..|..
T Consensus       257 d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          257 DTDGNHIARYEVPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             CTTCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             CCCCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence            99888776543  4579999998 99887643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.41  E-value=4.2e-06  Score=66.86  Aligned_cols=76  Identities=16%  Similarity=0.022  Sum_probs=55.8

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      +++||||++|.+++..        .++.|.++|..+++.+.+.+.         .....++|||||++|+.+...    .
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~  146 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----A  146 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----C
Confidence            5799999999998520        257899999998877665421         235689999999999988731    2


Q ss_pred             CCcEEEEeec-CcEEEe-cc
Q psy5876          64 DTGYWQWSFQ-GKIIKR-FN   81 (143)
Q Consensus        64 D~~i~iW~~~-g~~l~~-~~   81 (143)
                      ++.|.++| . ++.+.. ..
T Consensus       147 ~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcC
Confidence            57899999 7 556655 44

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.40  E-value=5e-06  Score=63.45  Aligned_cols=93  Identities=8%  Similarity=0.028  Sum_probs=68.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEEC--CCceE-----Eeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDT--GDFSV-----MNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~--~~~~~-----~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|||||+.|..+.. .++.|..||.  .+++.     +..+.  ......++++|+|++.++..      ..+.|.+||
T Consensus       154 i~~spdg~~lyv~~~-~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~------~~~~v~~~d  226 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDS-LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY------NGGRVIRLD  226 (297)
T ss_dssp             EEECTTSCEEEEEEG-GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE------TTTEEEEEC
T ss_pred             eEEcCCCCEEEEecC-CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc------CCCEEEEEc
Confidence            579999998866554 3688999986  34432     22222  23578999999999877776      467799999


Q ss_pred             ec-CcEEEecc--CCcEEEEEEe-eCCCeeeec
Q psy5876          72 FQ-GKIIKRFN--SPTFCQLRWR-PRPASLLSK  100 (143)
Q Consensus        72 ~~-g~~l~~~~--~~~v~~l~ws-P~~~~l~s~  100 (143)
                      .+ |+++....  ...+.+++|. |++..|.-.
T Consensus       227 ~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          227 PVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             TTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             CCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence            96 98887654  4689999998 998876533

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.39  E-value=4.7e-06  Score=63.71  Aligned_cols=91  Identities=9%  Similarity=-0.103  Sum_probs=65.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-   80 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-   80 (143)
                      .|+|+|+.|+..+. .++.|..|+.+............+..++|+|||+.+++..      .+++|.+|+.+|+..... 
T Consensus        51 ~~~~~g~~l~~~d~-~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~------~~~~v~~~~~~g~~~~~~~  123 (305)
T 3dr2_A           51 AWWEAQRTLVWSDL-VGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEH------GRRAITRSDADGQAHLLVG  123 (305)
T ss_dssp             EEEGGGTEEEEEET-TTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEEEEEC
T ss_pred             eEeCCCCEEEEEEC-CCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEEC------CCCEEEEECCCCCEEEEEe
Confidence            69999996655554 4789999998432222233345689999999999776655      467899999887643221 


Q ss_pred             --c---CCcEEEEEEeeCCCeeee
Q psy5876          81 --N---SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        81 --~---~~~v~~l~wsP~~~~l~s   99 (143)
                        .   .+.++++++.|+|...+|
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEe
Confidence              1   245778999999999997

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.38  E-value=1.2e-06  Score=67.09  Aligned_cols=96  Identities=8%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .++|||++|++ .   ++.|..||. +++.+-++..   ..+.++.+.|||+++++.+.     .++.+..++.+|+.+.
T Consensus        43 ~~~pdG~ilvs-~---~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~-----~~~~v~~vd~~Gk~l~  112 (276)
T 3no2_A           43 AATKAGEILFS-Y---SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCG-----HPSTILEVNMKGEVLS  112 (276)
T ss_dssp             EECTTSCEEEE-C---BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEES-----TTEEEEEECTTSCEEE
T ss_pred             EECCCCCEEEe-C---CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecC-----CCCEEEEEeCCCCEEE
Confidence            67899999994 2   578999999 7887776642   36889999999999999882     1456667787888776


Q ss_pred             ecc--------CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN--------SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~--------~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..        ......++..|+|..+++...++.|.
T Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~  149 (276)
T 3no2_A          113 KTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR  149 (276)
T ss_dssp             EEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred             EEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence            542        11344567889999999887766553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.36  E-value=3.5e-06  Score=63.48  Aligned_cols=97  Identities=14%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             CeEe----cCCCEEEEEecCCCCeEEEEECC-Cce-----EEeeec-c--CceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLR----MRGTHIVLAELRDTGSLEFVDTG-DFS-----VMNAAE-H--HQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~S----PdG~~las~~~~~dg~i~iWd~~-~~~-----~~~~~~-~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      ++|+    |||+.|..+.. .++.|.+||.+ +++     ....+. +  ..+..++++|+|+.+++..      .+++|
T Consensus       177 i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~------~~~~i  249 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW------GSSHI  249 (314)
T ss_dssp             EEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE------TTTEE
T ss_pred             EEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc------CCCEE
Confidence            4688    99987766643 36899999975 443     222222 1  4578899999999888876      47899


Q ss_pred             EEEeec-CcEEEec--cCCcEEEEEEeeCCCee-eecCchh
Q psy5876          68 WQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASL-LSKEQVD  104 (143)
Q Consensus        68 ~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l-~s~s~d~  104 (143)
                      .+|+.+ |+.+...  +...+.+++|+|+|..| ++...++
T Consensus       250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~  290 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence            999997 7765443  34679999999999944 4544433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.33  E-value=1.4e-06  Score=70.83  Aligned_cols=102  Identities=10%  Similarity=-0.026  Sum_probs=69.3

Q ss_pred             CeEecCCCEEEEEec-------C-CCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGTHIVLAEL-------R-DTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~~las~~~-------~-~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      +++||||++|.+++.       + .++.|.+||+.+++.+.+.+-         .....+++||||+++..+...    .
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~  158 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----P  158 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----S
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----C
Confidence            478999998877651       0 246899999999887766431         135679999999998877621    2


Q ss_pred             CCcEEEEeec-CcEEEeccCCc---EE------EEEEeeCCCeeeecCch-hhH
Q psy5876          64 DTGYWQWSFQ-GKIIKRFNSPT---FC------QLRWRPRPASLLSKEQV-DKI  106 (143)
Q Consensus        64 D~~i~iW~~~-g~~l~~~~~~~---v~------~l~wsP~~~~l~s~s~d-~~i  106 (143)
                      ++.+.++|.. ++.+.+.....   ++      -++.+|||+.+.-.... +.+
T Consensus       159 ~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            6789999995 66666654221   11      13678888877655443 444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.30  E-value=1.9e-06  Score=74.65  Aligned_cols=98  Identities=8%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             eEe-cCCCEEEEEecC---CCCeEEEEECCCc-eEEee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           2 KLR-MRGTHIVLAELR---DTGSLEFVDTGDF-SVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         2 ~~S-PdG~~las~~~~---~dg~i~iWd~~~~-~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      +|| |||++||-+...   ...+|+++|+.++ +.+.. .+ ....+++|||||+.|+..+..... ....|+.+++.+.
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~-~~~~v~~~~lgt~  257 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETL-RENKVWRHVMGKL  257 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTC-CEEEEEEEETTSC
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCC-CCCEEEEEECCCC
Confidence            689 999999976431   1135999999988 63321 11 123578999999988877631000 0024666777432


Q ss_pred             -----EEEecc-CCcEEEEEEeeCCCeeeecC
Q psy5876          76 -----IIKRFN-SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        76 -----~l~~~~-~~~v~~l~wsP~~~~l~s~s  101 (143)
                           ++.... ......+.|+|||+.|+-.+
T Consensus       258 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          258 QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             GGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             chhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence                 344322 34567889999999888543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.30  E-value=6.6e-06  Score=70.53  Aligned_cols=100  Identities=7%  Similarity=-0.017  Sum_probs=64.1

Q ss_pred             CeEecCCCEEEEEecCC------------CCeEEEEECCCce----EEeeecc--CceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRD------------TGSLEFVDTGDFS----VMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~------------dg~i~iWd~~~~~----~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      ++|||| +.|+.++...            ...|.+|++.++.    ++.....  ..+.++.|||||++|+..+.... .
T Consensus       214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~  291 (741)
T 1yr2_A          214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT-D  291 (741)
T ss_dssp             CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT-C
T ss_pred             EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC-C
Confidence            579999 9999887421            1248999987653    4433322  24889999999999998873210 0


Q ss_pred             cCCcEEEEeecCc--E-EEec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          63 ADTGYWQWSFQGK--I-IKRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        63 ~D~~i~iW~~~g~--~-l~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ..+.+++||+++.  . ....  +...+... +.|+|..|+..+.+
T Consensus       292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~  336 (741)
T 1yr2_A          292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD  336 (741)
T ss_dssp             SCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred             CcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC
Confidence            2458999999643  2 3322  23333443 35999988876654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.28  E-value=4.1e-06  Score=61.90  Aligned_cols=97  Identities=10%  Similarity=0.016  Sum_probs=66.1

Q ss_pred             CeEecCCCEEE-EEecCCCCeEEEEECCCceEEee-e-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIV-LAELRDTGSLEFVDTGDFSVMNA-A-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~la-s~~~~~dg~i~iWd~~~~~~~~~-~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+++|+|+.++ +.+  .++.|..||..+...... . ....+..++++|+|+.+++..       ++.+.+|+.+|..+
T Consensus        29 i~~~~~g~l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-------~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEG--MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-------NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             EEECTTCCEEEEECS--SSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-------TTEEEEECTTCSCC
T ss_pred             eEECCCCCEEEEccC--CCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-------CCEEEEEeCCCceE
Confidence            46889999777 434  478999999876543221 1 224678899999999666543       56899999987755


Q ss_pred             Eecc---CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          78 KRFN---SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        78 ~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ....   ......+++.|+|..+++...+..|
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  131 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRV  131 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEE
Confidence            4332   3578999999999988876554443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.26  E-value=5.9e-06  Score=62.20  Aligned_cols=94  Identities=6%  Similarity=0.010  Sum_probs=67.2

Q ss_pred             CeEecCCCEEEE-------EecCCCCeEEEEECCCceEEeee------ccCceEEEEECCC-CCEEEEeecCcceecCCc
Q psy5876           1 MKLRMRGTHIVL-------AELRDTGSLEFVDTGDFSVMNAA------EHHQATDVEWDPT-GRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las-------~~~~~dg~i~iWd~~~~~~~~~~------~~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~   66 (143)
                      ++|+|+|+.+++       +.  .++.|..||..+++.....      ....+..++++|+ |+.+++..       .++
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~~   93 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGK--PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLG   93 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTE--ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTE
T ss_pred             ceECCCCCEEEEEeccccCCC--CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CCC
Confidence            478999998887       44  3789999998776643221      1246889999999 87666554       447


Q ss_pred             EEEEeecCcEEEe-cc------CCcEEEEEEeeCCCeeeecCch
Q psy5876          67 YWQWSFQGKIIKR-FN------SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        67 i~iW~~~g~~l~~-~~------~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +.+|+.+|+.... ..      ...+.++++.|+|...++...+
T Consensus        94 l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  137 (314)
T 1pjx_A           94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAG  137 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred             EEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCc
Confidence            8899988665433 21      2357899999999988877543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.26  E-value=8.1e-06  Score=63.39  Aligned_cols=90  Identities=12%  Similarity=0.206  Sum_probs=66.0

Q ss_pred             CeEecCCCEEEEEecCCC----------CeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDT----------GSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d----------g~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      ++++|||++++++.  .+          +.|.++|..+++......   ......++|+|||++|..+.      .  .+
T Consensus       177 i~~~~dG~l~v~~~--~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~--~v  246 (328)
T 3dsm_A          177 LVMDKYNKMWTITD--GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------N--DI  246 (328)
T ss_dssp             CEECTTSEEEEEBC--CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES------S--SE
T ss_pred             eEEcCCCCEEEEEC--CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc------c--EE
Confidence            57899999777764  23          789999999888765543   23689999999999988765      2  78


Q ss_pred             EEEeec-CcEEEe--cc--CCcEEEEEEee-CCCeeeec
Q psy5876          68 WQWSFQ-GKIIKR--FN--SPTFCQLRWRP-RPASLLSK  100 (143)
Q Consensus        68 ~iW~~~-g~~l~~--~~--~~~v~~l~wsP-~~~~l~s~  100 (143)
                      .+||.. ++....  ..  ......++++| ++...++.
T Consensus       247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            899985 454321  11  35688999999 56666675

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.22  E-value=2.7e-06  Score=65.12  Aligned_cols=95  Identities=9%  Similarity=0.082  Sum_probs=66.1

Q ss_pred             CeEecCCCEEEEEecCC----CCeEEEEECCCceE-----EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRD----TGSLEFVDTGDFSV-----MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~----dg~i~iWd~~~~~~-----~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|||||+.|..+....    ++.|..||++...+     ...........++++++|++.++..        ++|.+|+
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~--------~gv~~~~  264 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG--------TGVCVFD  264 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS--------SEEEEEC
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC--------CcEEEEC
Confidence            47999999887776310    26899999875431     1111223456789999999555432        3699999


Q ss_pred             ecCcEEEecc-CCcEEEEEEeeCCCeeeecCch
Q psy5876          72 FQGKIIKRFN-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        72 ~~g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .+|+.+.... ...+.+++|.|++..|..++.+
T Consensus       265 ~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          265 SDGQLLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             TTSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CCCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            9999887654 3468889999999877765544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.21  E-value=4.6e-05  Score=57.98  Aligned_cols=90  Identities=10%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE--E
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII--K   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l--~   78 (143)
                      .|+|+++.|..... .++.|..||..+++.........+..++++|||+++++ .       ++++.+||.+ |+..  .
T Consensus        19 ~w~~~~~~l~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-------~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           19 VWEEVSNSLLFVDI-PAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-------GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-------TTEEEEEETTTTEEEEEE
T ss_pred             eEECCCCEEEEEEC-CCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-------CCeEEEEECCCCcEEEEE
Confidence            69997766666554 47899999998765532222357899999999996554 3       4589999986 4432  2


Q ss_pred             ecc----CCcEEEEEEeeCCCeeeec
Q psy5876          79 RFN----SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        79 ~~~----~~~v~~l~wsP~~~~l~s~  100 (143)
                      ...    ...++++++.|+|...++.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~  115 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGT  115 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEec
Confidence            211    2358999999999977764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.15  E-value=2.2e-05  Score=62.65  Aligned_cols=99  Identities=12%  Similarity=-0.018  Sum_probs=68.6

Q ss_pred             EecCCCEEEEEec-CCCC--eEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc----eecCCcEEEEeec-C
Q psy5876           3 LRMRGTHIVLAEL-RDTG--SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK----TKADTGYWQWSFQ-G   74 (143)
Q Consensus         3 ~SPdG~~las~~~-~~dg--~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~----~~~D~~i~iW~~~-g   74 (143)
                      .+|+|+++.++.. +.+.  +|.++|..+++.+.+.+......+++||||+++..+...+.    -..++.+.+||.. +
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            3588988877652 1111  88999999999887765432239999999999988863211    0136789999994 6


Q ss_pred             cEEEeccC---------CcEEEEEEeeCCCeeeecC
Q psy5876          75 KIIKRFNS---------PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        75 ~~l~~~~~---------~~v~~l~wsP~~~~l~s~s  101 (143)
                      +.+.....         ..-..++|+|||++|+...
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence            66654321         1234799999999998765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.14  E-value=2.2e-05  Score=60.90  Aligned_cols=91  Identities=8%  Similarity=-0.028  Sum_probs=64.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      .|+|+++.|...+. .++.|..||..+++.........+.+++|+|||+++++..        +++.+||.. |+.....
T Consensus        55 ~~~~~~~~l~~~d~-~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           55 TFDPASGTAWWFNI-LERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEETTTTEEEEEEG-GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEE
T ss_pred             eEeCCCCEEEEEEC-CCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEe
Confidence            69998766655554 4689999999887643222235689999999999887643        358899985 5532211


Q ss_pred             c------CCcEEEEEEeeCCCeeeecC
Q psy5876          81 N------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        81 ~------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      .      ...++++++.|+|...++..
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~  152 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTM  152 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeC
Confidence            1      23689999999999777653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.09  E-value=7e-05  Score=55.48  Aligned_cols=96  Identities=6%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe-ee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-AA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+++|+|+..++..  .++.|..||.. ++... ..  ....+..++++|+|+.+++..      .++.+..|+.+|+..
T Consensus        20 i~~d~~g~l~v~~~--~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           20 ITVSDKGKVWITQH--KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN------AANKIGRITKKGIIK   90 (299)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEE
T ss_pred             eEECCCCCEEEEec--CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC------CCCeEEEECCCCcEE
Confidence            46789999777654  36889999988 54332 21  234689999999999888766      467899999887642


Q ss_pred             Ee-c--cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          78 KR-F--NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        78 ~~-~--~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .. .  ....+..+++.|+|...++......
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  121 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNR  121 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecCCce
Confidence            22 2  2457899999999998887654433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.03  E-value=7.6e-05  Score=55.30  Aligned_cols=97  Identities=5%  Similarity=-0.099  Sum_probs=68.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee-e--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-A--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ++++|+|+..++..  .++.|..||. +++.... .  ....+..++++|+|+.+++..      .++++..|+.+|+..
T Consensus       188 i~~~~~g~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~d~~g~~~  258 (299)
T 2z2n_A          188 ITKGNDDALWFVEI--IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW------GANKIGRLTSNNIIE  258 (299)
T ss_dssp             EEECTTSSEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET------TTTEEEEEETTTEEE
T ss_pred             EEECCCCCEEEEcc--CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc------CCceEEEECCCCceE
Confidence            46789999776654  3688999998 5553321 2  224689999999999777664      367899999977543


Q ss_pred             Ee-cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KR-FN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .. ..  ...+.++++ ++|...++.+.++.++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            22 22  357899999 9999888865444433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.01  E-value=5.1e-05  Score=64.74  Aligned_cols=93  Identities=14%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce------------EEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS------------VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~------------~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      +.+||||+++.+++. .+.+|.++|+.+.+            ...+.+ ......++|+||| ++.+...     .|+.+
T Consensus       282 v~~sPDGk~v~V~~~-~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~-----ldsqV  354 (595)
T 1fwx_A          282 CNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLF-----LDSQV  354 (595)
T ss_dssp             EEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEET-----TTTEE
T ss_pred             EEEcCCCCEEEEeCC-CCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEe-----cCCcE
Confidence            468999999999887 58899999999653            333333 3578999999999 6655553     79999


Q ss_pred             EEEeecC-----------cEEEeccC-CcEEEE------EEeeCCCeeeec
Q psy5876          68 WQWSFQG-----------KIIKRFNS-PTFCQL------RWRPRPASLLSK  100 (143)
Q Consensus        68 ~iW~~~g-----------~~l~~~~~-~~v~~l------~wsP~~~~l~s~  100 (143)
                      ..|+++.           +.+.+... ...-+.      ..+|||++|++.
T Consensus       355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            9999953           34444432 122223      347999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.00  E-value=1.1e-05  Score=65.38  Aligned_cols=98  Identities=6%  Similarity=-0.021  Sum_probs=69.0

Q ss_pred             EecCCCEEEEEecC---CCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCc-c---eecCCcEEEEeec-
Q psy5876           3 LRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLW-K---TKADTGYWQWSFQ-   73 (143)
Q Consensus         3 ~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~-~---~~~D~~i~iW~~~-   73 (143)
                      ..|||+.+.++...   .++.|.+.|..+++.+.+.+. ... .+++||||+++..++... +   -..++.|.+||.. 
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            47999999888641   157999999999998877643 223 499999999887765311 0   0125689999995 


Q ss_pred             CcEEEeccC---------CcEEEEEEeeCCCeeeecC
Q psy5876          74 GKIIKRFNS---------PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~~l~~~~~---------~~v~~l~wsP~~~~l~s~s  101 (143)
                      ++.+.....         ..-..++++|||++|....
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence            666665431         1345689999999877653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.97  E-value=5.4e-05  Score=58.65  Aligned_cols=97  Identities=10%  Similarity=0.035  Sum_probs=65.8

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcc---e-ecCCcEEEEeec-CcEEEe
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWK---T-KADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~---~-~~D~~i~iW~~~-g~~l~~   79 (143)
                      +++.|.+++.+.++.|.++|..+++.+.+.. ......++++|||++++++.....   + ...+.+.++|.. ++....
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            3455555543126899999999988776654 234678999999998877763100   0 002689999995 555544


Q ss_pred             cc---CCcEEEEEEeeCCCeeeecCc
Q psy5876          80 FN---SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        80 ~~---~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..   ......++|+|++..|.....
T Consensus       219 ~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          219 FKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             EecCCCCCceeEEEecCCCEEEEEcc
Confidence            43   236889999999998876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.91  E-value=4e-05  Score=59.66  Aligned_cols=99  Identities=7%  Similarity=0.065  Sum_probs=65.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC---Cc-----eE---Eee-eccCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG---DF-----SV---MNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~---~~-----~~---~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      |+|||||++|..+.. ..+.+..++..   .+     +.   +.. .+......++++|+|+.+++..      .++.|.
T Consensus       200 ia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~------~~~~V~  272 (343)
T 2qe8_A          200 IVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL------AHSAIG  272 (343)
T ss_dssp             EEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG------GGTEEE
T ss_pred             eEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc------CCCeEE
Confidence            578999999888874 22344444422   10     00   011 1112456799999999888877      578999


Q ss_pred             EEee-cCcEEEec--c-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          69 QWSF-QGKIIKRF--N-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        69 iW~~-~g~~l~~~--~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      +||. +|+.....  . .....++++.|++..+++.++...+
T Consensus       273 ~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          273 VITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            9999 78743322  2 3468899999999999988765433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.90  E-value=0.00018  Score=57.92  Aligned_cols=101  Identities=7%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---------------cCceEEEEECCCCCEEEEee-cCcceecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---------------HHQATDVEWDPTGRYVMSGV-SLWKTKAD   64 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---------------~~~v~~i~wsPdG~~lat~s-~~~~~~~D   64 (143)
                      |+|+|++..|..+.. .++.|+.||.+.........               ......++++|+|+.+++-+ .      +
T Consensus       272 ia~~p~~g~lyv~d~-~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~  344 (409)
T 3hrp_A          272 LIYYFVDSNFYMSDQ-NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------G  344 (409)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------T
T ss_pred             EEEeCCCCEEEEEeC-CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------C
Confidence            478996555555443 47899999977432211111               12478999999999766654 3      6


Q ss_pred             CcEEEEee-cCcEEEecc----------------CCcEEEEEEeeCCCeeeecCchhhHHh
Q psy5876          65 TGYWQWSF-QGKIIKRFN----------------SPTFCQLRWRPRPASLLSKEQVDKIKK  108 (143)
Q Consensus        65 ~~i~iW~~-~g~~l~~~~----------------~~~v~~l~wsP~~~~l~s~s~d~~i~~  108 (143)
                      +.|+.|+. +|.......                ...-..+++.|+|..+++......||+
T Consensus       345 ~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            78999994 565432211                235789999999999998877766653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.89  E-value=1.9e-05  Score=64.73  Aligned_cols=101  Identities=9%  Similarity=-0.065  Sum_probs=68.6

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      |.+||||++|.+++..        .++.|.++|..+++.+.+..-         .....+++||||+++..+...    .
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~  198 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----P  198 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----S
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----C
Confidence            5789999999887520        156899999999887765431         234578999999999888631    2


Q ss_pred             CCcEEEEeec-CcEEEeccCCcE---E------EEEEeeCCCeeeecCchhh
Q psy5876          64 DTGYWQWSFQ-GKIIKRFNSPTF---C------QLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        64 D~~i~iW~~~-g~~l~~~~~~~v---~------~l~wsP~~~~l~s~s~d~~  105 (143)
                      ++.|.+.|.. ++.+.+......   .      -++++|+|+.++-...+.+
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence            5789999995 566665543211   1      1567788876654434433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.88  E-value=3.8e-05  Score=61.86  Aligned_cols=90  Identities=9%  Similarity=-0.024  Sum_probs=61.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecC-cE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQG-KI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g-~~   76 (143)
                      |+|+|+|+.+++..  .++.|+.||.++++....... .... ++|+|+|++|+.+..      ++  .+.+|+..+ ..
T Consensus       136 la~d~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~------~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          136 IAAVGNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW------EGTHTVYVYMKASGWA  206 (409)
T ss_dssp             EEECSTTEEEEEET--TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS------STTCEEEEEEGGGTTC
T ss_pred             EEEeCCCCEEEEec--CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec------CCCceEEEEEcCCCce
Confidence            57899999776665  478999999988765443322 2334 999999999888873      33  677888753 33


Q ss_pred             EEec------cCCcEEEEEEee-CCCeeee
Q psy5876          77 IKRF------NSPTFCQLRWRP-RPASLLS   99 (143)
Q Consensus        77 l~~~------~~~~v~~l~wsP-~~~~l~s   99 (143)
                      ....      ......+++++| ++..+++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~  236 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFV  236 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEE
Confidence            2222      245678899999 5555553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.82  E-value=0.00021  Score=55.50  Aligned_cols=99  Identities=13%  Similarity=0.042  Sum_probs=64.2

Q ss_pred             CeEecCCCEEEEEecCC----CCeEEEEECCCceEEeeecc--------CceEEEEECCCCCEE-EEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRD----TGSLEFVDTGDFSVMNAAEH--------HQATDVEWDPTGRYV-MSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~----dg~i~iWd~~~~~~~~~~~~--------~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i   67 (143)
                      |+++|+|+..++..- .    ++.|.+||..+++.+..+..        ..+.+++++|++.++ ++.++.   ..++++
T Consensus        72 v~~d~~g~L~v~D~g-~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---~~~~~i  147 (343)
T 2qe8_A           72 IKSDGNGIVWMLDNG-NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---DDKAAL  147 (343)
T ss_dssp             EEECSSSEEEEEECH-HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---GGGCEE
T ss_pred             EEEcCCCcEEEEcCC-CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---CCCCeE
Confidence            478899987766431 1    46899999998886554321        246899999976554 443310   026788


Q ss_pred             EEEeec-CcEEEeccC-------------------------------CcEEEEEEeeCCCeeeecCch
Q psy5876          68 WQWSFQ-GKIIKRFNS-------------------------------PTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        68 ~iW~~~-g~~l~~~~~-------------------------------~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .+||.. |+.......                               .....++|+|+|+.|......
T Consensus       148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence            999985 554432210                               236889999999988765443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.79  E-value=0.00055  Score=50.56  Aligned_cols=95  Identities=6%  Similarity=-0.018  Sum_probs=68.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe-eec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-AAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+++|+|+..++..  .++.|.+||.. ++... ...  ...+..++++|+|+.+++..      .++.+..+|.+|+..
T Consensus        25 i~~d~~g~l~v~~~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           25 ITSSEDGKVWFTQH--KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN------GANKIGKLSKKGGFT   95 (300)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEE
T ss_pred             eeECCCCCEEEEcC--CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec------CCCeEEEECCCCCeE
Confidence            35789999777764  46899999988 54332 222  24689999999999877765      467899999887654


Q ss_pred             Ee-cc--CCcEEEEEEeeCCCeeeecCchh
Q psy5876          78 KR-FN--SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        78 ~~-~~--~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .. ..  ...+..+++.|+|...++.....
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  125 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGD  125 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCC
Confidence            22 22  35789999999999888765443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.79  E-value=8.9e-05  Score=59.54  Aligned_cols=87  Identities=7%  Similarity=-0.082  Sum_probs=59.4

Q ss_pred             eEecCCCEEEEEec-C-C-----CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-
Q psy5876           2 KLRMRGTHIVLAEL-R-D-----TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-   72 (143)
Q Consensus         2 ~~SPdG~~las~~~-~-~-----dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-   72 (143)
                      +++|||+++..+.. . .     ++.+.++|+.+++.+.+.+. .....++|+|||++++.+...    .++.+.++|. 
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~----~~~~VsVID~~  345 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA----GTEVLDIYDAA  345 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET----TTTEEEEEESS
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC----CCCeEEEEECC
Confidence            58999998887541 0 0     12566999999988887643 368899999999854444410    2789999999 


Q ss_pred             cCcEEEecc-CCcEEEEEEee
Q psy5876          73 QGKIIKRFN-SPTFCQLRWRP   92 (143)
Q Consensus        73 ~g~~l~~~~-~~~v~~l~wsP   92 (143)
                      +++.+.... ...-+.+++++
T Consensus       346 t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          346 SDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             SCEEEEECCCCSCCCEEECCC
T ss_pred             CCcEEEEEECCCCCCEEEeec
Confidence            477777665 33344455443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.76  E-value=0.00061  Score=50.34  Aligned_cols=96  Identities=6%  Similarity=0.011  Sum_probs=68.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE-eeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM-NAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~-~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+++|+|+..++..  .++.|..+|.+ ++.. ....  ...+..++++|+|+.+++..      .++.+..++.+|+..
T Consensus        67 i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~  137 (300)
T 2qc5_A           67 LIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL------NGDRIGKLTADGTIY  137 (300)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEET------TTTEEEEECTTSCEE
T ss_pred             EEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEcc------CCCeEEEECCCCCEE
Confidence            35789998777654  36889999987 4432 2221  24689999999999888766      467888999887755


Q ss_pred             Ee-cc--CCcEEEEEEeeCCCeeeecCchhh
Q psy5876          78 KR-FN--SPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        78 ~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .. ..  ......+++.|+|...++......
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            32 22  457899999999997777654433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.74  E-value=0.00034  Score=59.63  Aligned_cols=94  Identities=7%  Similarity=0.054  Sum_probs=58.2

Q ss_pred             CeEecCCCEEEEEecCC-----------CCeEEEEECCCce----EEeeecc---CceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRD-----------TGSLEFVDTGDFS----VMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~-----------dg~i~iWd~~~~~----~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      ++|| ||+.|+.+....           ...|.+|++.+..    ++.....   ..+.++.|||||++|+..+....  
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--  256 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--  256 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS--
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC--
Confidence            5799 999999887410           1349999988643    4444332   23688999999999866553110  


Q ss_pred             cCCcEEEEeecCc--EEEe--ccCCcEEEEEEeeCCCeee
Q psy5876          63 ADTGYWQWSFQGK--IIKR--FNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        63 ~D~~i~iW~~~g~--~l~~--~~~~~v~~l~wsP~~~~l~   98 (143)
                      .++.++++++++.  ....  .+.+..... |+|+|..|+
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~  295 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY  295 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence            2358899998532  2222  223334443 677776555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.72  E-value=9.7e-05  Score=60.55  Aligned_cols=75  Identities=8%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc-CceEEEEECCCCC-EEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++++|||++|.++..+        ..++|.+.|+.+++.+.+..- .....++|+|||+ +++++..     .++.+.++
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~-----~s~~VsVI  398 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSA-----GTQTLHIY  398 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET-----TTTEEEEE
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcC-----CCCeEEEE
Confidence            3688999977665310        125799999999998887753 3588999999999 7777763     48899999


Q ss_pred             ee-cCcEEEec
Q psy5876          71 SF-QGKIIKRF   80 (143)
Q Consensus        71 ~~-~g~~l~~~   80 (143)
                      |. +++.+.+.
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99 57777664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.71  E-value=0.00041  Score=57.53  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             eEecCCCEEEEEecC-----------------CCCeEEEEECCCceEEeeecc----CceEEEEE--CCCCCEEEEeecC
Q psy5876           2 KLRMRGTHIVLAELR-----------------DTGSLEFVDTGDFSVMNAAEH----HQATDVEW--DPTGRYVMSGVSL   58 (143)
Q Consensus         2 ~~SPdG~~las~~~~-----------------~dg~i~iWd~~~~~~~~~~~~----~~v~~i~w--sPdG~~lat~s~~   58 (143)
                      .|+|+++.++++.++                 ...+|.+||.++++.+.+...    .....+.|  +|+|+++..++..
T Consensus       194 ~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~  273 (462)
T 2ece_A          194 WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV  273 (462)
T ss_dssp             EEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred             EECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEee
Confidence            479999999998521                 157999999999887776543    24566766  9999988777620


Q ss_pred             cceecCCcEEEEeec-CcE--EEe--cc------------------CCcEEEEEEeeCCCeeeecC
Q psy5876          59 WKTKADTGYWQWSFQ-GKI--IKR--FN------------------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        59 ~~~~~D~~i~iW~~~-g~~--l~~--~~------------------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ..-..++.|.+|..+ |..  +..  ..                  .....++.++|||+.|..+.
T Consensus       274 ~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn  339 (462)
T 2ece_A          274 SLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL  339 (462)
T ss_dssp             ETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE
T ss_pred             eccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe
Confidence            000025577777664 321  110  00                  13467899999999887543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.49  E-value=0.0011  Score=50.96  Aligned_cols=94  Identities=12%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-------CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      .++|||++|.++.  .++.|.+.|..+++.+.+..-       ...+.+.|. ||+.+++..      .++.|.+-|. +
T Consensus       111 glt~Dg~~l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~------~~~~V~vID~~t  181 (266)
T 2iwa_A          111 GLATDGKILYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW------QTDCIARISAKD  181 (266)
T ss_dssp             EEEECSSSEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TSSEEEEEETTT
T ss_pred             EEEECCCEEEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC------CCCeEEEEECCC
Confidence            4689999888876  478999999999876655421       246788999 886555544      4678999999 5


Q ss_pred             CcEEEeccC---------------CcEEEEEEeeCCCeee-ecCchh
Q psy5876          74 GKIIKRFNS---------------PTFCQLRWRPRPASLL-SKEQVD  104 (143)
Q Consensus        74 g~~l~~~~~---------------~~v~~l~wsP~~~~l~-s~s~d~  104 (143)
                      |+.+.....               ...+.++|+|++++++ ++....
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence            776665431               3568999999997655 554433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.46  E-value=0.0011  Score=57.30  Aligned_cols=71  Identities=6%  Similarity=-0.072  Sum_probs=47.3

Q ss_pred             CeEecCCCEEEEEecCCC---CeEEEEECCCce----EEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDT---GSLEFVDTGDFS----VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d---g~i~iWd~~~~~----~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|||||+.|+....+..   ..|.++++.+..    ++.... .....++.|||||++|+..+...   ..+.++++|+
T Consensus       226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~l~~~d~  302 (751)
T 2xe4_A          226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---ETAEVHLLDL  302 (751)
T ss_dssp             CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---SCEEEEEEES
T ss_pred             EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---CCceEEEEEC
Confidence            479999999888764211   368888887642    333322 23467899999999998776311   2446778888


Q ss_pred             cC
Q psy5876          73 QG   74 (143)
Q Consensus        73 ~g   74 (143)
                      ++
T Consensus       303 ~~  304 (751)
T 2xe4_A          303 RK  304 (751)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.38  E-value=0.00046  Score=55.38  Aligned_cols=81  Identities=10%  Similarity=-0.125  Sum_probs=58.6

Q ss_pred             eEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCc-c---eecCCcEEEEee-cCcEEEeccC---------Cc
Q psy5876          20 SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLW-K---TKADTGYWQWSF-QGKIIKRFNS---------PT   84 (143)
Q Consensus        20 ~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~-~---~~~D~~i~iW~~-~g~~l~~~~~---------~~   84 (143)
                      +|.+.|..+++.+.++.. ..- .+.+||||+++..+.... +   -..++.|.+||. +++.+.+...         ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            888999999998887642 223 899999999888876311 0   013678999999 4777766531         23


Q ss_pred             EEEEEEeeCCCeeeecC
Q psy5876          85 FCQLRWRPRPASLLSKE  101 (143)
Q Consensus        85 v~~l~wsP~~~~l~s~s  101 (143)
                      -..++++|||++|+.+.
T Consensus       126 P~~ia~SpDGk~lyVan  142 (368)
T 1mda_H          126 VHIIGNCASSACLLFFL  142 (368)
T ss_dssp             TTSEEECTTSSCEEEEE
T ss_pred             cceEEEcCCCCEEEEEc
Confidence            45789999999888653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.37  E-value=0.00087  Score=57.16  Aligned_cols=101  Identities=7%  Similarity=-0.000  Sum_probs=67.7

Q ss_pred             CeEecCCCEEEEEecCC-C-----------------------------------CeEEEEECCC--ceE-Eeeec-cCce
Q psy5876           1 MKLRMRGTHIVLAELRD-T-----------------------------------GSLEFVDTGD--FSV-MNAAE-HHQA   40 (143)
Q Consensus         1 i~~SPdG~~las~~~~~-d-----------------------------------g~i~iWd~~~--~~~-~~~~~-~~~v   40 (143)
                      ++.||||+++.+++.+. .                                   +.|.+.|..+  ++. +...+ ....
T Consensus       200 ~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P  279 (595)
T 1fwx_A          200 CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP  279 (595)
T ss_dssp             EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC
T ss_pred             eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc
Confidence            36789999999887531 0                                   1366666665  332 22222 2345


Q ss_pred             EEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-------------EEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          41 TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-------------IIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        41 ~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-------------~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .++.+||||+|++.++.     .++.+.++|+...             .+.+.. ...-.+++|+|+|...++...+.+|
T Consensus       280 hGv~~sPDGk~v~V~~~-----~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV  354 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGK-----LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  354 (595)
T ss_dssp             CCEEECTTSSEEEEECT-----TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             eEEEEcCCCCEEEEeCC-----CCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcE
Confidence            67899999999988885     6889999999632             233333 4578899999999544555556555

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.30  E-value=0.003  Score=48.66  Aligned_cols=91  Identities=13%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      .+++||+.|..+.  .++.|.++|..+++.+.+..       ...++.+.|. +|+.+|..-      .++.|.+-|. +
T Consensus       131 glt~dg~~L~~Sd--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w------~~~~I~vIDp~t  201 (262)
T 3nol_A          131 GLTHNDQYLIMSD--GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW------QTNKIVRIDPET  201 (262)
T ss_dssp             CEEECSSCEEECC--SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TSSEEEEECTTT
T ss_pred             EEecCCCEEEEEC--CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc------cCCeEEEEECCC
Confidence            4578898888775  36789999999987766532       1345678887 887555443      4678888898 5


Q ss_pred             CcEEEecc--------------CCcEEEEEEeeCCCeeeecC
Q psy5876          74 GKIIKRFN--------------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~~l~~~~--------------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      |+.+....              .+..+.|||.|++.+|.-.+
T Consensus       202 G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          202 GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            77665432              13578999999988776544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.006  Score=50.56  Aligned_cols=96  Identities=13%  Similarity=0.205  Sum_probs=68.5

Q ss_pred             e--cCCCEEEEEecCCCCeEEEEECCCc----eEEeeec--------c-CceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           4 R--MRGTHIVLAELRDTGSLEFVDTGDF----SVMNAAE--------H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         4 S--PdG~~las~~~~~dg~i~iWd~~~~----~~~~~~~--------~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      +  +++++|.+.+. .++.|.+.|+.+.    +...+.+        . ...-.+..+||| .++++..+..-...++|.
T Consensus        90 ~~~~~r~~l~v~~l-~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           90 KPNIERRFLIVPGL-RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CTTCCSCEEEEEBT-TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred             CCCccCCEEEEccC-CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence            7  99999999887 5889999998753    5555552        1 134567889999 666665321111237899


Q ss_pred             EEeec-CcEEEeccC-----CcEEEEEEeeCCCeeeecC
Q psy5876          69 QWSFQ-GKIIKRFNS-----PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        69 iW~~~-g~~l~~~~~-----~~v~~l~wsP~~~~l~s~s  101 (143)
                      +.|.. ++.+.++..     ..-+++.|+|+++.+++.+
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence            99985 777877652     2346799999999999884

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.14  E-value=0.0039  Score=47.62  Aligned_cols=100  Identities=10%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-----ceEEeeeccCceEEEEECCCCCEEEEeecCc----ceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAAEHHQATDVEWDPTGRYVMSGVSLW----KTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~----~~~~D~~i~iW~   71 (143)
                      |+|+|||++|..+.. .++.|..++.+.     .+.+.... . ...++.+++|++.++.....    .....+.+..+|
T Consensus       190 ia~~~dg~~lyv~d~-~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d  266 (322)
T 2fp8_A          190 AEVSADSSFVLVAEF-LSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD  266 (322)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred             eEECCCCCEEEEEeC-CCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC
Confidence            579999997766643 367899999764     22222222 2 78899999999777665200    000134677888


Q ss_pred             ecCcEEEecc------CCcEEEEEEeeCCCeeeecCchh
Q psy5876          72 FQGKIIKRFN------SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        72 ~~g~~l~~~~------~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      .+|+.+....      ...+..+++ +++...++.....
T Consensus       267 ~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          267 EFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             TTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred             CCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence            8888776543      134566666 5777777754443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.12  E-value=0.0047  Score=47.77  Aligned_cols=90  Identities=11%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      ..++||+.|..+.  .++.|.++|..+++.+.+..       ...++.+.|. +|+.+|..-      .++.|.+-|. +
T Consensus       140 GLt~Dg~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T  210 (268)
T 3nok_A          140 GLCYWNGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW------HSSDVLEIDPAT  210 (268)
T ss_dssp             CEEEETTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT
T ss_pred             EEecCCCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC------CCCeEEEEeCCC
Confidence            3568899888876  47899999999988766542       1246788998 887665543      4678888888 5


Q ss_pred             CcEEEecc---------------CCcEEEEEEeeCCCeeeec
Q psy5876          74 GKIIKRFN---------------SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        74 g~~l~~~~---------------~~~v~~l~wsP~~~~l~s~  100 (143)
                      |+.+....               .+..+.|||.|++.+|+-.
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            77665421               1367999999987766543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.10  E-value=0.02  Score=42.31  Aligned_cols=94  Identities=7%  Similarity=-0.018  Sum_probs=63.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|+|+++.|..+.. .++.|..+|.+.........  ......++++|++++|..+..     ..+.|.+++.+|....
T Consensus        41 i~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~-----~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           41 LAFDCVDKVVYWTDI-SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS-----QLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCE
T ss_pred             EEEecCCCEEEEEEC-CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC-----CCCEEEEEEcCCCCEE
Confidence            468898877777765 47899999987643222222  246789999998776666553     4678889999875322


Q ss_pred             ec---cCCcEEEEEEeeCCCe-eeec
Q psy5876          79 RF---NSPTFCQLRWRPRPAS-LLSK  100 (143)
Q Consensus        79 ~~---~~~~v~~l~wsP~~~~-l~s~  100 (143)
                      ..   ....-..+++.|++.. .++.
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEE
Confidence            21   2245689999996554 4454

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.98  E-value=0.0086  Score=45.52  Aligned_cols=90  Identities=7%  Similarity=-0.027  Sum_probs=62.4

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCC-ceE--Eeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE-
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGD-FSV--MNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK-   78 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~-~~~--~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~-   78 (143)
                      +|||++|..+.. ..+.|..+|.+. ++.  ...+ .......++++|+|+++++..      ..+.|.+++.+|+... 
T Consensus       175 s~dg~~lyv~d~-~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~------~~~~V~~~~~~G~~~~~  247 (306)
T 2p4o_A          175 KRFGNFLYVSNT-EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH------IYNSVVRIAPDRSTTII  247 (306)
T ss_dssp             EEETTEEEEEET-TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB------TTCCEEEECTTCCEEEE
T ss_pred             CcCCCEEEEEeC-CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC------CCCeEEEECCCCCEEEE
Confidence            788988877765 478899999764 321  1111 113456789999999877766      4678999999988643 


Q ss_pred             -ecc--CCcEEEEEEe---eCCCeeeec
Q psy5876          79 -RFN--SPTFCQLRWR---PRPASLLSK  100 (143)
Q Consensus        79 -~~~--~~~v~~l~ws---P~~~~l~s~  100 (143)
                       ...  .....+++|.   |++..|.-.
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt  275 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVV  275 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             eecccccCCceEEEEecccCCCCEEEEE
Confidence             333  3578999998   897766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.95  E-value=0.0024  Score=54.65  Aligned_cols=75  Identities=16%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             CeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CC--cEEEEEEeeC
Q psy5876          19 GSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SP--TFCQLRWRPR   93 (143)
Q Consensus        19 g~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~--~v~~l~wsP~   93 (143)
                      |.|..||..+++.+-+.++ .++....++++|..++.++      .|+.+++||. +|+.+.++. ..  .-.-+.|.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~  530 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT------ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC------CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeC
Confidence            7899999999998776543 3455566778888888887      6999999998 699988764 21  2234567789


Q ss_pred             CCeeee
Q psy5876          94 PASLLS   99 (143)
Q Consensus        94 ~~~l~s   99 (143)
                      |+.++.
T Consensus       531 G~~~v~  536 (677)
T 1kb0_A          531 GRQYVS  536 (677)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            876554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.93  E-value=0.014  Score=44.37  Aligned_cols=91  Identities=11%  Similarity=0.255  Sum_probs=63.7

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      .+.+||+.|..+.  .++.|.++|..+++.+.+.+       ...++.+.|. +|+.+|..-      .++.|.+-|. +
T Consensus       109 glt~dg~~L~vSd--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp~t  179 (243)
T 3mbr_X          109 ALTSDDSHLYMSD--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW------LTSRIARIDPAS  179 (243)
T ss_dssp             EEEECSSCEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TTTEEEEECTTT
T ss_pred             EEeeCCCEEEEEC--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC------CCCeEEEEECCC
Confidence            3568888887775  47899999999987765542       1356788887 887665543      3668888888 5


Q ss_pred             CcEEEecc---------------CCcEEEEEEeeCCCeeeecC
Q psy5876          74 GKIIKRFN---------------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~~l~~~~---------------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      |+.+....               .+..+.|+|.|++.+|.-.+
T Consensus       180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            77665421               13578999999887666443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.90  E-value=0.024  Score=43.03  Aligned_cols=54  Identities=15%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGV   56 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s   56 (143)
                      ++|+|+|+.+++..  .++.|..||.+...............++++|||+.+++..
T Consensus        37 ia~~~~g~lyv~d~--~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           37 LASAPDGTIFVTNH--EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEeC--CCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEec
Confidence            47899999766654  4789999997753222111234688999999999777654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.86  E-value=0.0034  Score=53.83  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=54.8

Q ss_pred             CeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CC--cEEEEEEeeC
Q psy5876          19 GSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SP--TFCQLRWRPR   93 (143)
Q Consensus        19 g~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~--~v~~l~wsP~   93 (143)
                      |.|.-||..+++.+-+.+. .....-.+++.|..++.++      .|+.++.||. +|++|.+.. ..  .-.-+.|.++
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS------ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC------CCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence            7899999999998766542 3344446777888888887      6999999998 599987653 21  2234677889


Q ss_pred             CCeeee
Q psy5876          94 PASLLS   99 (143)
Q Consensus        94 ~~~l~s   99 (143)
                      |+..+.
T Consensus       529 G~qyv~  534 (689)
T 1yiq_A          529 GEQYVT  534 (689)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            975554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.85  E-value=0.012  Score=46.28  Aligned_cols=98  Identities=9%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-----cCceEEEEECCC---CCEE-EEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-----HHQATDVEWDPT---GRYV-MSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-----~~~v~~i~wsPd---G~~l-at~s~~~~~~~D~~i~iW~   71 (143)
                      |+|.|||+++++-   .+|.|.+++..+.+.+....     ......|+|+||   +++| ++.+.... ...+.|..++
T Consensus        36 ia~~pdG~l~V~e---~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~-~~~~~v~r~~  111 (352)
T 2ism_A           36 LAFLPDGGMLIAE---RPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG-GLRNQVVRLR  111 (352)
T ss_dssp             EEECTTSCEEEEE---TTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT-SSEEEEEEEE
T ss_pred             EEEcCCCeEEEEe---CCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC-CCccEEEEEE
Confidence            5789999966654   36999999822222222221     246899999999   5544 44331000 0014566677


Q ss_pred             ecCc------EEEe-cc-----CCcEEEEEEeeCCCeeeecCc
Q psy5876          72 FQGK------IIKR-FN-----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        72 ~~g~------~l~~-~~-----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .++.      .+.. ..     .+.-..++|.|||...++.++
T Consensus       112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~  154 (352)
T 2ism_A          112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE  154 (352)
T ss_dssp             ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred             eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence            6542      1221 22     123468999999988888654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.79  E-value=0.064  Score=39.49  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=62.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |+++|+++.|..+.. ..+.|.+++.+..  +.+..........++++|++.+|..+...   ...+.|..++.+|....
T Consensus        84 ia~d~~~~~lyv~d~-~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~---~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           84 IALDHLGRTIFWTDS-QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN---RDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC---SSSCEEEEEETTSCCCE
T ss_pred             EEEEecCCeEEEEEC-CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC---CCCcEEEEEecCCCCcE
Confidence            467888777766654 4678999997642  22222222467899999976655444420   01357778888876433


Q ss_pred             e---ccCCcEEEEEEeeCCCee-eecCchhhH
Q psy5876          79 R---FNSPTFCQLRWRPRPASL-LSKEQVDKI  106 (143)
Q Consensus        79 ~---~~~~~v~~l~wsP~~~~l-~s~s~d~~i  106 (143)
                      .   .....-..+++.|++..| ++......|
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence            2   223457889999987655 454444333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.73  E-value=0.013  Score=46.24  Aligned_cols=96  Identities=8%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce-EEeeec-----cCceEEEEECCC----CCEEEEeecCcceecC----Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAAE-----HHQATDVEWDPT----GRYVMSGVSLWKTKAD----TG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~~-----~~~v~~i~wsPd----G~~lat~s~~~~~~~D----~~   66 (143)
                      |+|.|||+++++-   .+|.|.++|. +++ .+....     ......|+++||    |+.+++-+...   .+    +.
T Consensus        34 ia~~pdG~l~V~e---~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~---~~~~~~~~  106 (354)
T 3a9g_A           34 IAPLGGGRYLVTE---RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA---EGGHIRNR  106 (354)
T ss_dssp             EEEEETTEEEEEE---TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC---GGGCEEEE
T ss_pred             EEEcCCCeEEEEe---CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC---CCCCcceE
Confidence            5789999866654   3699999974 343 332211     245889999998    54444443100   12    45


Q ss_pred             EEEEeecCc--------EEEe-cc---CCcEEEEEEeeCCCeeeecCch
Q psy5876          67 YWQWSFQGK--------IIKR-FN---SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        67 i~iW~~~g~--------~l~~-~~---~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      |..|+.++.        .+.. ..   .+.-..++|.|||...++.++.
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~  155 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDA  155 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            666776543        1211 21   1234679999999988886553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.70  E-value=0.007  Score=46.51  Aligned_cols=94  Identities=13%  Similarity=0.076  Sum_probs=63.5

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN   81 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~   81 (143)
                      +.++|+.|..++. .++.+.++|..+++.+.+++...-.....+|||+.+..+.      .++.+.+.|.. .+.+....
T Consensus        71 i~~~g~~lyv~t~-~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~------gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           71 LTLLNEKLYQVVW-LKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSD------GTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             EEEETTEEEEEET-TCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEEC------SSSEEEEECTTTCCEEEEEE
T ss_pred             EEEeCCEEEEEEe-cCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEEC------CCCeEEEEECCCCcEEEEEE
Confidence            4556778877776 5899999999999988877432112244666888777655      37789999985 45555433


Q ss_pred             -------CCcEEEEEEeeCCCeeeecCchh
Q psy5876          82 -------SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        82 -------~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                             ...++.+.|. +|...++.....
T Consensus       144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             ECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence                   1247888998 776666654433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.67  E-value=0.0016  Score=51.34  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR   79 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~   79 (143)
                      +|..|++++  .||.|..||..+++.+-+++...+.+..+.++|+.+++++      .|+.++.||. +|+.+.+
T Consensus         8 ~~~~v~~gs--~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s------~dg~l~a~d~~tG~~~w~   74 (369)
T 2hz6_A            8 PETLLFVST--LDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDP------NDGSLYTLGSKNNEGLTK   74 (369)
T ss_dssp             CTTEEEEEE--TTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECT------TTCCEEEC-----CCSEE
T ss_pred             eCCEEEEEc--CCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeC------CCCEEEEEECCCCceeee
Confidence            577888888  5899999999999987665444555556678888888776      5889999999 6876544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.61  E-value=0.022  Score=43.38  Aligned_cols=95  Identities=11%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~   75 (143)
                      |+|.|+++.|.+... .++.|...|.. ++.+.+..   ....-.|++.++|+|+++.-      .++.+.++++.  +.
T Consensus        32 la~~~~~~~L~aV~d-~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E------~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           32 LTWSAQSNTLFSTIN-KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDE------RDYAIYVISLTPNSE  103 (255)
T ss_dssp             EEEETTTTEEEEEEE-TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEET------TTTEEEEEEECTTCC
T ss_pred             eEEeCCCCEEEEEEC-CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEEC------CCCcEEEEEcCCCCe
Confidence            578998887776543 47888888987 77766653   24678999999999877643      46778888874  32


Q ss_pred             --EEEec-------c-CCcEEEEEEeeCCCeeeecCch
Q psy5876          76 --IIKRF-------N-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        76 --~l~~~-------~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                        .+...       . ...+-.++|.|++++|..+.+.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~  141 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK  141 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc
Confidence              11211       1 2357899999999888776553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.58  E-value=0.044  Score=41.59  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CeEec-CCCEEEEEec---------------CCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRM-RGTHIVLAEL---------------RDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SP-dG~~las~~~---------------~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      +++.| +|+..++...               ..+|.|..+|..+++...... ......|+|+|||++|..+..     .
T Consensus       131 i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~-----~  205 (322)
T 2fp8_A          131 VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEF-----L  205 (322)
T ss_dssp             EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEG-----G
T ss_pred             EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeC-----C
Confidence            35678 8887766421               013678888887665432211 234578999999997666543     4


Q ss_pred             CCcEEEEeecCc----E-EEeccCCcEEEEEEeeCCCeeeecC
Q psy5876          64 DTGYWQWSFQGK----I-IKRFNSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        64 D~~i~iW~~~g~----~-l~~~~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      .+.|..+++++.    . ....... -..+++.|+|...++..
T Consensus       206 ~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          206 SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            678888888642    1 1111122 56678888888766653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.42  E-value=0.0049  Score=52.78  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             cCC---CEEEEEecCCCCeEEEEECCCceEEeeeccCc-------------e------------------------EEEE
Q psy5876           5 MRG---THIVLAELRDTGSLEFVDTGDFSVMNAAEHHQ-------------A------------------------TDVE   44 (143)
Q Consensus         5 PdG---~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~-------------v------------------------~~i~   44 (143)
                      .||   +.|+.++  .+|.+.++|..+++.+...+...             +                        ..++
T Consensus       322 ~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a  399 (677)
T 1kb0_A          322 IAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS  399 (677)
T ss_dssp             ETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred             cCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence            367   5777777  68999999999998876542110             0                        1568


Q ss_pred             ECCCCCEEEEeecCcce-------------------------------------ecCCcEEEEee-cCcEEEecc-CCcE
Q psy5876          45 WDPTGRYVMSGVSLWKT-------------------------------------KADTGYWQWSF-QGKIIKRFN-SPTF   85 (143)
Q Consensus        45 wsPdG~~lat~s~~~~~-------------------------------------~~D~~i~iW~~-~g~~l~~~~-~~~v   85 (143)
                      ++|++..+.+.+....+                                     ...+.+..||+ +|+.+-+.. ...+
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~  479 (677)
T 1kb0_A          400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW  479 (677)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC
Confidence            99999888776531000                                     01257889998 587765543 3345


Q ss_pred             EEEEEeeCCCeeeecCchhhHH
Q psy5876          86 CQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        86 ~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +...+.+.+..++.++.|+.++
T Consensus       480 ~~g~~~~~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          480 NGGTLTTAGNVVFQGTADGRLV  501 (677)
T ss_dssp             CCCEEEETTTEEEEECTTSEEE
T ss_pred             cCcceEeCCCEEEEECCCCcEE
Confidence            5556777888888887777654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.38  E-value=0.002  Score=50.87  Aligned_cols=87  Identities=10%  Similarity=-0.006  Sum_probs=50.1

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCC---CEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTG---RYVMSGVSLWKTKADTGYWQWSF-QGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG---~~lat~s~~~~~~~D~~i~iW~~-~g~~l   77 (143)
                      .++|++..|++++  .+|.|..||..+++.+-++........++++++   ..+++++      .|+.+..||. +|+.+
T Consensus       125 ~~~p~~~~v~~~~--~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~------~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          125 SLSPSTSLLYLGR--TEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSN------GDGLVVTVDSESGDVL  196 (369)
T ss_dssp             --------EEEEE--EEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEE------TSCEEEEECTTTCCEE
T ss_pred             cccccCCEEEEEe--cCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEEC------CCCEEEEEECCCCcEE
Confidence            3578888888887  479999999998876544432222334445542   3455566      4889999999 68877


Q ss_pred             Eecc-CCcE-EEEEEeeCCCe
Q psy5876          78 KRFN-SPTF-CQLRWRPRPAS   96 (143)
Q Consensus        78 ~~~~-~~~v-~~l~wsP~~~~   96 (143)
                      -+.. ..++ ....++++|..
T Consensus       197 W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          197 WIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEEECSSCEEEEEECTTSSCE
T ss_pred             EEecCCCceEEEEEecCCceE
Confidence            6543 3344 34455666653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.34  E-value=0.069  Score=41.16  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=57.7

Q ss_pred             CeEecCCCEEEEEecCCCCeE-EEEEC--CCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSL-EFVDT--GDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i-~iWd~--~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      +.++|+|++++.+.   +|.+ +-+|-  .+.+.+.......+..++++|+|+.++.+.       ++.+++.+.+ |+.
T Consensus       168 ~~~~~~~~~~~~g~---~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          168 LNRSPSGEYVAVSS---RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-------GGKIAFSDPDNSEN  237 (327)
T ss_dssp             EEECTTSCEEEEET---TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-------TTEEEEEETTEEEE
T ss_pred             EEEcCCCcEEEEEC---CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-------CceEEEecCCCCCe
Confidence            35788998887764   4544 33453  355555444446789999999999776654       4555555433 433


Q ss_pred             EEecc------CCcEEEEEEeeCCCeeeecC
Q psy5876          77 IKRFN------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        77 l~~~~------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      -....      ...+.++++.|++..++.+.
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             eEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            22221      23589999999888777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.21  E-value=0.021  Score=43.91  Aligned_cols=92  Identities=9%  Similarity=0.038  Sum_probs=61.9

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN   81 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~   81 (143)
                      ..++|+.|-.... .++.+.++|..+++.+.+++... .....++||+.|..+.      .++.+.++|.. .+.+.+..
T Consensus        92 it~~g~~ly~ltw-~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~Sd------Gs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           92 ISDWKDKIVGLTW-KNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSD------GTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             EEEETTEEEEEES-SSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECC------SSSEEEEECTTTCSEEEEEE
T ss_pred             EEEeCCEEEEEEe-eCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEEC------CCCeEEEEcCCCCeEEEEEE
Confidence            3567777777766 58999999999999988875322 2233446787776655      36778899985 56665532


Q ss_pred             -------CCcEEEEEEeeCCCeeeecCch
Q psy5876          82 -------SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        82 -------~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                             ...++.+.|. +|...+..-++
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             eccCCccccccceeEEE-CCEEEEEEccC
Confidence                   2456778887 77655554333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.13  E-value=0.04  Score=43.82  Aligned_cols=98  Identities=9%  Similarity=0.045  Sum_probs=59.8

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec------cCceEEEEECCC----CCEEEEeecCcceecCCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE------HHQATDVEWDPT----GRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~------~~~v~~i~wsPd----G~~lat~s~~~~~~~D~~i~   68 (143)
                      |+|.|||+.+++--  ..|.|++++.++++.  +....      ......|+++||    |...++-+..    .++.|.
T Consensus        37 ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~----~~~~v~  110 (347)
T 3das_A           37 LAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA----SDNRIV  110 (347)
T ss_dssp             EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS----SSEEEE
T ss_pred             EEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC----CCCEEE
Confidence            57899999877653  379999998665442  22221      246899999996    5555543321    234455


Q ss_pred             EEeecC-----------cEEE-ecc---CCcEEEEEEeeCCCeeeecCchh
Q psy5876          69 QWSFQG-----------KIIK-RFN---SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        69 iW~~~g-----------~~l~-~~~---~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      -|.+++           +.|. ...   .+.-..|.|.|||...++.++..
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~  161 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG  161 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence            555543           1121 121   23445799999999989876543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.93  E-value=0.043  Score=45.26  Aligned_cols=89  Identities=8%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce------------EEeeec--------cCceEEEEECCCCC---EEEEeecC
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS------------VMNAAE--------HHQATDVEWDPTGR---YVMSGVSL   58 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~------------~~~~~~--------~~~v~~i~wsPdG~---~lat~s~~   58 (143)
                      ..||+|++||..|   +.+|.+-.+..+.            ....+.        ..+|..+.|+|-|.   .|++=.  
T Consensus        72 vlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt--  146 (452)
T 3pbp_A           72 ISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK--  146 (452)
T ss_dssp             EECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE--
T ss_pred             EECCCCCEEEEec---CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe--
Confidence            4699999999998   6789998876211            111221        24699999999654   677666  


Q ss_pred             cceecCCcEEEEeecC-c--E--EEec----c----CCcEEEEEEeeCCCeeee
Q psy5876          59 WKTKADTGYWQWSFQG-K--I--IKRF----N----SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        59 ~~~~~D~~i~iW~~~g-~--~--l~~~----~----~~~v~~l~wsP~~~~l~s   99 (143)
                          .|+.|++||+.- .  .  +.+.    .    ...|.+++|.++|-.|-.
T Consensus       147 ----sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          147 ----EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             ----TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             ----cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                599999999952 2  1  2111    1    257899999998865544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.90  E-value=0.052  Score=41.85  Aligned_cols=93  Identities=6%  Similarity=-0.124  Sum_probs=63.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF   80 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~   80 (143)
                      ..++|+.|-.... .++.+.++|..+++.+.+++.. .-..++  +||+.|..+.      .++.+.++|.. .+.+.+.
T Consensus       101 it~~g~~Ly~ltw-~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSd------Gs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A          101 LASDGERLYQLTW-TEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSD------GGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             EEECSSCEEEEES-SSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEEC------SSSEEEEECTTTCCEEEEE
T ss_pred             EEEeCCEEEEEEc-cCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEEC------CCCEEEEEcCCCCeEEEEE
Confidence            3567777777666 5899999999999998887532 112333  6788777766      47789999985 5666553


Q ss_pred             c-------CCcEEEEEEeeCCCeeeecCchhh
Q psy5876          81 N-------SPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        81 ~-------~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      .       ...++.+.|. +|...+...+...
T Consensus       172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          172 QVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            2       2357788888 7776665543333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.87  E-value=0.045  Score=44.14  Aligned_cols=98  Identities=8%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             CeEecCCCEEEEEecCCCC----eEEEEECCC-ce---EEeeeccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTG----SLEFVDTGD-FS---VMNAAEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg----~i~iWd~~~-~~---~~~~~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      |+|+|+|++|.++..+ ++    .+...+.+. ..   .+..  ......++++| +|+.+++-.      ..+.|..++
T Consensus       184 ia~d~~G~~lyvad~~-~~~~~~~v~~~~~~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~------~~~~V~~~~  254 (430)
T 3tc9_A          184 ICWTHEADSMIITNDQ-NNNDRPNNYILTRESGFKVITELTK--GQNCNGAETHPINGELYFNSW------NAGQVFRYD  254 (430)
T ss_dssp             EEECTTSSEEEEEECC-SCTTSEEEEEEEGGGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEET------TTTEEEEEE
T ss_pred             EEEeCCCCEEEEEeCC-CCcccceEEEEeCCCceeeeeeecc--CCCceEEEEeCCCCEEEEEEC------CCCEEEEEE
Confidence            5789999977666531 12    233344321 11   2222  23467889999 676555544      367888899


Q ss_pred             ecCcEEE---ecc-CCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876          72 FQGKIIK---RFN-SPTFCQLRWRPRPA-SLLSKEQVDKIK  107 (143)
Q Consensus        72 ~~g~~l~---~~~-~~~v~~l~wsP~~~-~l~s~s~d~~i~  107 (143)
                      .++..+.   ... ...-..++|+|+|. ..++......|.
T Consensus       255 ~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          255 FTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             TTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            8766442   222 23456899999999 556655554443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.85  E-value=0.064  Score=43.27  Aligned_cols=67  Identities=10%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceE--Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~--~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      ++++| +|..+++ .. .++.|..+|.++.+.  +.... ......++|+|+|++|..+..     ..+.|..++.+|
T Consensus       231 iavdp~~g~lyv~-d~-~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~-----~~~~I~~~~~d~  301 (430)
T 3tc9_A          231 AETHPINGELYFN-SW-NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV-----NQHYILRSDYDW  301 (430)
T ss_dssp             EEECTTTCCEEEE-ET-TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-----TTTEEEEEEEET
T ss_pred             EEEeCCCCEEEEE-EC-CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-----CCCEEEEEeCCc
Confidence            46789 5655544 44 478999999887654  22222 235789999999996665553     467888888765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.77  E-value=0.11  Score=42.39  Aligned_cols=101  Identities=10%  Similarity=0.036  Sum_probs=57.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeeec--------cCceEEEEECCC----CCEEEEeecCcc-e----
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAE--------HHQATDVEWDPT----GRYVMSGVSLWK-T----   61 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~--------~~~v~~i~wsPd----G~~lat~s~~~~-~----   61 (143)
                      |+|.|||+++++-.  ..+.|.+++..+++  .+..+.        ......|+|+||    |...++-+.... .    
T Consensus        32 ~a~~pdG~l~V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~  109 (454)
T 1cru_A           32 LLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (454)
T ss_dssp             EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             EEEcCCCcEEEEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence            57899999887753  12468888765443  232221        235779999995    444444431000 0    


Q ss_pred             -ecCCcEEEEeecC--------cEEEe-cc---CCcEEEEEEeeCCCeeeecCch
Q psy5876          62 -KADTGYWQWSFQG--------KIIKR-FN---SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        62 -~~D~~i~iW~~~g--------~~l~~-~~---~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                       ...+.|.-|+.++        +.+.. ..   .+.-..|+|.|||...++.++.
T Consensus       110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A          110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence             0012444455432        11221 22   2457899999999988887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.71  E-value=0.054  Score=46.25  Aligned_cols=92  Identities=11%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCc------eE-------Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDF------SV-------MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~------~~-------~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      -.+|||+|++.++. .+.++.++|..+.      ++       ....+ .......+|+++| +..|.--     .|+.+
T Consensus       329 ~vsPDGkyi~v~GK-LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf-----idSqv  401 (638)
T 3sbq_A          329 NTSSDGKYFIAAGK-LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF-----IDSQV  401 (638)
T ss_dssp             EECTTSCEEEEECT-TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET-----TTTEE
T ss_pred             eeCCCCCEEEEcCC-CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeee-----ecceE
Confidence            46899999999887 6899999998742      11       22222 2467899999999 4444432     69999


Q ss_pred             EEEeecC-----------cEEEecc-CCcEEEEEE------eeCCCeeeec
Q psy5876          68 WQWSFQG-----------KIIKRFN-SPTFCQLRW------RPRPASLLSK  100 (143)
Q Consensus        68 ~iW~~~g-----------~~l~~~~-~~~v~~l~w------sP~~~~l~s~  100 (143)
                      .-|+++.           ..+.+.. ....-++.-      .|+|++|++.
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            9999852           2344433 234444444      6777777773

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.59  E-value=0.11  Score=39.46  Aligned_cols=87  Identities=5%  Similarity=-0.041  Sum_probs=57.4

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN   81 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~   81 (143)
                      .++|+.|-.... .++.+.++|..+++.+.+++.. .-..++  +||+.|..+.      .++.+.++|.. .+.+.+..
T Consensus        71 ~~~~~~ly~ltw-~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSd------gs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           71 VAWRDRLIQLTW-RNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSD------GTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             EEETTEEEEEES-SSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEEC------SSSEEEEECTTTCCEEEEEE
T ss_pred             EEeCCEEEEEEe-eCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEEC------CCCeEEEEeCCCCeEEEEEE
Confidence            456677766666 5899999999999998887532 123444  5677665554      36789999984 55555432


Q ss_pred             -------CCcEEEEEEeeCCCeeeec
Q psy5876          82 -------SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        82 -------~~~v~~l~wsP~~~~l~s~  100 (143)
                             ...++.+.|. +|...+..
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EccCCcccccceeeEEe-CCEEEEEE
Confidence                   2456777776 66655544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.41  E-value=0.076  Score=42.17  Aligned_cols=95  Identities=11%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             ecCCCEEEEEecC-----------CCCeEEEEECC---CceEEeeec---------------cCceEEEEECCCCCEEEE
Q psy5876           4 RMRGTHIVLAELR-----------DTGSLEFVDTG---DFSVMNAAE---------------HHQATDVEWDPTGRYVMS   54 (143)
Q Consensus         4 SPdG~~las~~~~-----------~dg~i~iWd~~---~~~~~~~~~---------------~~~v~~i~wsPdG~~lat   54 (143)
                      -|+|+.+++...+           .+..|..+|+.   +++.+....               ...+.+++..|+|+-.++
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt  153 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA  153 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence            5888888754310           14678899988   666543211               124899999999999998


Q ss_pred             eecCcceecC-CcEEEEeecCcEEEec--c------CCcEEEEEEeeCCCeeeecCchh
Q psy5876          55 GVSLWKTKAD-TGYWQWSFQGKIIKRF--N------SPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        55 ~s~~~~~~~D-~~i~iW~~~g~~l~~~--~------~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ++      .. +.|...+.+|+.+.-+  .      ....+.++++|+|..|+.....+
T Consensus       154 ~s------~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g  206 (334)
T 2p9w_A          154 FA------LGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR  206 (334)
T ss_dssp             EE------ESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred             CC------CCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence            88      34 5666666677743321  1      12477999999999888664444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.36  E-value=0.21  Score=37.90  Aligned_cols=96  Identities=5%  Similarity=0.061  Sum_probs=63.1

Q ss_pred             CeEecCCCEEEEEecCCCC-eEEEEEC--CC--ceEEee------eccCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTG-SLEFVDT--GD--FSVMNA------AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg-~i~iWd~--~~--~~~~~~------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      |+|+|+++.|.++.. .+. .|.-|+-  .+  ...+..      ......+.++++|...+|..-|+     ..+.+.+
T Consensus       126 LA~d~~~~~L~va~E-~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-----~s~~L~~  199 (255)
T 3qqz_A          126 LAYSRQDHTFWFFKE-KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-----ESRALQE  199 (255)
T ss_dssp             EEEETTTTEEEEEEE-SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-----TTTEEEE
T ss_pred             EEEeCCCCEEEEEEC-cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-----CCCeEEE
Confidence            589999987777663 233 4445551  11  122211      11235789999998877777775     5678888


Q ss_pred             EeecCcEEEecc--C---------CcEEEEEEeeCCCeeeecCc
Q psy5876          70 WSFQGKIIKRFN--S---------PTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        70 W~~~g~~l~~~~--~---------~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +|.+|+.+....  .         ..--.+++.|+|...++.+.
T Consensus       200 ~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          200 VTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             ECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             EcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence            999999665432  1         25679999999998877554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.32  E-value=0.067  Score=41.94  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCceE---Eeee------ccCceEEEEECCC----CCEEEEeecCccee--cC
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSV---MNAA------EHHQATDVEWDPT----GRYVMSGVSLWKTK--AD   64 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~---~~~~------~~~~v~~i~wsPd----G~~lat~s~~~~~~--~D   64 (143)
                      |+|.|||+ ++++ .  ..|.|++++.+. +.   +...      .......++++||    |...++-+.. ...  ..
T Consensus        23 i~~~pdG~~l~V~-e--~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~-~~~g~~~   97 (353)
T 2g8s_A           23 LAFLPDNHGMLIT-L--RGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV-GDDGKAG   97 (353)
T ss_dssp             EEECSTTCCEEEE-E--TTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE-CSSSCEE
T ss_pred             EEEcCCCCEEEEE-e--CCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC-CCCCCce
Confidence            57899999 5554 4  369999998543 22   1111      1135789999996    5444443310 000  01


Q ss_pred             CcEEEEeecCc--------EEE-ecc-----CCcEEEEEEeeCCCeeeecCc
Q psy5876          65 TGYWQWSFQGK--------IIK-RFN-----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        65 ~~i~iW~~~g~--------~l~-~~~-----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      +.|..|++++.        .+. ...     .+.-..++|.|||...++.++
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            24555555321        111 111     122467999999988887654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.03  E-value=0.28  Score=39.58  Aligned_cols=66  Identities=9%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             CeEec-CCCEEEEEecCCCCeEEEEECCCceEEe---eec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMN---AAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~---~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++++| +|+..++- . .++.|+.+|.++++...   ... ......++|+|+|++|..+..     ..+.|..++++
T Consensus       233 iavd~~~G~lyv~d-~-~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~-----~~~~I~~~~~d  303 (433)
T 4hw6_A          233 CAVHPQNGKIYYTR-Y-HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN-----GKHCIYRVDYN  303 (433)
T ss_dssp             CEECTTTCCEEECB-T-TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET-----TTTEEEEEEBC
T ss_pred             EEEeCCCCeEEEEE-C-CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC-----CCCEEEEEeCC
Confidence            46788 66655443 3 47889999988665422   211 123457999999996665553     45677777765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.83  E-value=0.4  Score=38.67  Aligned_cols=100  Identities=5%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC--Cce-----EEeee-c-------------cCceEEEEE---------CCCCC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFS-----VMNAA-E-------------HHQATDVEW---------DPTGR   50 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~-----~~~~~-~-------------~~~v~~i~w---------sPdG~   50 (143)
                      |+|+|+|++|..+.. ..+.|+.++.+  +++     .+... .             ......+++         .++|.
T Consensus       278 ia~dpdG~~LYvad~-~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~  356 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYN-GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD  356 (433)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred             EEEeCCCCEEEEEeC-CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence            579999997766654 36789887755  221     11110 0             123678999         88888


Q ss_pred             EEEEeecCcceecCCcEEEEeecCcEEEecc-------------------CCcEEEEEEe-eCCCeeeecCchhhHH
Q psy5876          51 YVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-------------------SPTFCQLRWR-PRPASLLSKEQVDKIK  107 (143)
Q Consensus        51 ~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-------------------~~~v~~l~ws-P~~~~l~s~s~d~~i~  107 (143)
                      .+++-.      ..+.|+.++.+|.......                   ...-..+++. ++|..+++......||
T Consensus       357 lyvaD~------~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          357 FYFCDR------DSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             EEEEET------TTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             EEEEEC------CCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            777655      4667888888775432211                   1235689999 7888888776655554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.70  E-value=0.053  Score=46.42  Aligned_cols=97  Identities=8%  Similarity=0.072  Sum_probs=64.1

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeeccC-----------------------------------------ceEEEEECC
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAEHH-----------------------------------------QATDVEWDP   47 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~~-----------------------------------------~v~~i~wsP   47 (143)
                      .|+.++  .+|.+.++|..+++++...+..                                         .-..++++|
T Consensus       321 ~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          321 VLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence            677776  5899999999999887432100                                         011278999


Q ss_pred             CCCEEEEeecCcce--------------------e-------------------cCCcEEEEee-cCcEEEecc-CCcEE
Q psy5876          48 TGRYVMSGVSLWKT--------------------K-------------------ADTGYWQWSF-QGKIIKRFN-SPTFC   86 (143)
Q Consensus        48 dG~~lat~s~~~~~--------------------~-------------------~D~~i~iW~~-~g~~l~~~~-~~~v~   86 (143)
                      +.+.+.+.+....+                    .                   .++.+..||+ +|+.+-+.. .....
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  478 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN  478 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence            99888776532100                    0                   1367889999 588776543 33344


Q ss_pred             EEEEeeCCCeeeecCchhhHH
Q psy5876          87 QLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        87 ~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .-.+.+.+..++.++.|+.++
T Consensus       479 ~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             CCEEEETTTEEEEECTTSEEE
T ss_pred             CccceECCCEEEEECCCCcEE
Confidence            446677888888888887765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.68  E-value=0.65  Score=36.85  Aligned_cols=93  Identities=9%  Similarity=0.055  Sum_probs=54.8

Q ss_pred             eEecCCCEEEEEecC---------------CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876           2 KLRMRGTHIVLAELR---------------DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         2 ~~SPdG~~las~~~~---------------~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~   66 (143)
                      ...|+|++.++....               ..|.|.-+|..+.+.+.. .-...+.++|||||++|..+.+     ..+.
T Consensus       171 ~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~-~l~~pNGia~spDg~~lYvadt-----~~~~  244 (355)
T 3sre_A          171 VAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAEL-----LAHK  244 (355)
T ss_dssp             EEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE-EESSEEEEEECTTSSEEEEEEG-----GGTE
T ss_pred             EEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec-CCcccCcceECCCCCEEEEEeC-----CCCe
Confidence            456888877765310               124555566543333322 1245789999999998887775     4677


Q ss_pred             EEEEeec--CcEEEe--cc-CCcEEEEEEee-CCCeeeec
Q psy5876          67 YWQWSFQ--GKIIKR--FN-SPTFCQLRWRP-RPASLLSK  100 (143)
Q Consensus        67 i~iW~~~--g~~l~~--~~-~~~v~~l~wsP-~~~~l~s~  100 (143)
                      |..|+++  |.+-..  +. ...--.++..+ +|...+++
T Consensus       245 I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          245 IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence            8888884  443211  11 22344566777 47766644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.67  E-value=0.32  Score=37.31  Aligned_cols=94  Identities=11%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--c----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g   74 (143)
                      .++|+|+.++.+.   +|.+.+.+.+.++.-...  .    ...+..+++.|+++.++++.       ++.+ .++.+ |
T Consensus       211 ~~~~~g~~~~~~~---~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG  279 (327)
T 2xbg_A          211 GFTPDGRLWMIVN---GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGG  279 (327)
T ss_dssp             EECTTSCEEEEET---TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTT
T ss_pred             EECCCCCEEEEeC---CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCC
Confidence            4678888776653   688877754434432221  1    23588999999999888766       4455 45555 4


Q ss_pred             cEEEecc-----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 KIIKRFN-----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +.-....     ...++++.|.+++. ++.++.++.|.
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~  316 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILL  316 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEE
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEE
Confidence            3222111     34688899986665 55555666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.58  E-value=0.34  Score=40.81  Aligned_cols=95  Identities=7%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             eEec-CCCEEEEEecCCC---------CeEEEEECCCce--EEeee---ccCceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876           2 KLRM-RGTHIVLAELRDT---------GSLEFVDTGDFS--VMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         2 ~~SP-dG~~las~~~~~d---------g~i~iWd~~~~~--~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~   66 (143)
                      ++.| +|+.++.||.+.+         ..+.+||..+.+  .+...   ....+..+++.++|+.++.|+.     .++.
T Consensus       192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~-----~~~~  266 (656)
T 1k3i_A          192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN-----DAKK  266 (656)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS-----STTC
T ss_pred             EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC-----CCCc
Confidence            4567 8999999885311         168899977643  22222   1223567889999999999985     3557


Q ss_pred             EEEEeecCcEEEe---ccCCc-EEEEEEeeCCCeeeecC
Q psy5876          67 YWQWSFQGKIIKR---FNSPT-FCQLRWRPRPASLLSKE  101 (143)
Q Consensus        67 i~iW~~~g~~l~~---~~~~~-v~~l~wsP~~~~l~s~s  101 (143)
                      +.+||.....-..   .+..+ -..++.-|+|+.++.|+
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG  305 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG  305 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence            9999985432222   22222 23456668999999988

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.41  E-value=0.22  Score=39.06  Aligned_cols=62  Identities=8%  Similarity=0.152  Sum_probs=36.6

Q ss_pred             ceEEEEECCCCCEEEEeecCcce-------ecCCcEEEEeecCc----------EEEeccCCcEEEEEEee-CCCeeeec
Q psy5876          39 QATDVEWDPTGRYVMSGVSLWKT-------KADTGYWQWSFQGK----------IIKRFNSPTFCQLRWRP-RPASLLSK  100 (143)
Q Consensus        39 ~v~~i~wsPdG~~lat~s~~~~~-------~~D~~i~iW~~~g~----------~l~~~~~~~v~~l~wsP-~~~~l~s~  100 (143)
                      ....++|+|||+.+++-++....       ...+.|.-.+.+|+          .+.......-+.++|.| +|...++.
T Consensus       136 ~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          136 NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEE
T ss_pred             CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEe
Confidence            45789999999977775431100       01234555566665          23333334456899999 67766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.39  E-value=0.34  Score=36.62  Aligned_cols=93  Identities=11%  Similarity=-0.016  Sum_probs=58.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-------c--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-------F--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS   71 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-------~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~   71 (143)
                      ++|+|||..-++ .   +|.+.-.+..+       +  ..+-.........+.|.|+|.+.++ +       |+.|+-++
T Consensus        46 laf~P~G~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~-------dG~iyr~~  113 (236)
T 1tl2_A           46 LFLSPGGELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S-------KDKLYKAS  113 (236)
T ss_dssp             EEECTTSCEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E-------TTEEEEES
T ss_pred             EEECCCccEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C-------CCEEEEeC
Confidence            579999998888 4   57765555433       1  1222112233578999999998888 6       56666665


Q ss_pred             e--cC--------cEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          72 F--QG--------KIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        72 ~--~g--------~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .  ++        ..+-...-..+..|.+.|+|..-+-.  ++.+.
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            5  22        22222122468999999999866655  44443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.22  E-value=1.2  Score=33.96  Aligned_cols=91  Identities=10%  Similarity=-0.019  Sum_probs=56.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC----ce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD----FS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~----~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      +.|+|+++.|..+.. .++.|..++.+.    ..  .+..........+++++.++.|..+..     ..+.|.+.+.+|
T Consensus        35 ~~~d~~~~~ly~~D~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~-----~~~~I~~~~~~g  108 (316)
T 1ijq_A           35 LDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS-----VLGTVSVADTKG  108 (316)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET-----TTTEEEEEETTS
T ss_pred             EEEEeCCCEEEEEEC-CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC-----CCCEEEEEeCCC
Confidence            468888777766654 468899998775    11  111111235678999987665554432     467899999988


Q ss_pred             cEEEec---cCCcEEEEEEeeCCCee
Q psy5876          75 KIIKRF---NSPTFCQLRWRPRPASL   97 (143)
Q Consensus        75 ~~l~~~---~~~~v~~l~wsP~~~~l   97 (143)
                      +.....   ....-..++..|.+..|
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~l  134 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFM  134 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEE
Confidence            643322   23466788888865544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.22  E-value=0.15  Score=42.64  Aligned_cols=77  Identities=12%  Similarity=0.013  Sum_probs=49.3

Q ss_pred             CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCcE--EEEEEee
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPTF--CQLRWRP   92 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~v--~~l~wsP   92 (143)
                      +|.|..||..+++.+-+.+. ..+........|..+..++      .|+.++.||. +|+++.+.. ...+  ..+.+.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~  516 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT------LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc------CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence            47899999999887765532 2222222333455666676      5899999998 699887654 2211  2344678


Q ss_pred             CCCeeeec
Q psy5876          93 RPASLLSK  100 (143)
Q Consensus        93 ~~~~l~s~  100 (143)
                      +|+.++..
T Consensus       517 ~G~~yv~~  524 (571)
T 2ad6_A          517 KGKQYIGS  524 (571)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            99866643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.11  E-value=1.4  Score=34.18  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=57.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecC-CcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD-TGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D-~~i~iW~~~g~~l~   78 (143)
                      ++.|.+..|..+.. ..+.|.+.+.+...  .+..........++++|++.+|.....     .. +.|...+.+|....
T Consensus       122 avd~~~g~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~-----~~~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          122 AVDWVHDKLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW-----GNTPRIEASSMDGSGRR  195 (349)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC-----SSSCEEEEEETTSCSCE
T ss_pred             EEecCCCeEEEEcC-CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc-----CCCCEEEEEeCCCCCcE
Confidence            45565555544433 35678888876422  222222245789999997776655442     23 67888888886544


Q ss_pred             ec---cCCcEEEEEEeeCCCee-eecCchhhH
Q psy5876          79 RF---NSPTFCQLRWRPRPASL-LSKEQVDKI  106 (143)
Q Consensus        79 ~~---~~~~v~~l~wsP~~~~l-~s~s~d~~i  106 (143)
                      ..   ....-..++|.|++..| ++.+....|
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence            33   23356789999876654 444433333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.10  E-value=1.4  Score=33.41  Aligned_cols=97  Identities=10%  Similarity=0.043  Sum_probs=57.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ++.|.++.|..+.. ..+.|.+.|.+...  .+..........++.+|++++|..+...    ..+.|...+.+|.....
T Consensus        83 avd~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~----~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           83 AVDWIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEE
T ss_pred             EEeecCCeEEEEEC-CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC----CCCeEEEEcCCCCCeEE
Confidence            45665555544433 36788888876432  2222223467899999977755544420    12577778888875443


Q ss_pred             c---cCCcEEEEEEeeCCCeee-ecCch
Q psy5876          80 F---NSPTFCQLRWRPRPASLL-SKEQV  103 (143)
Q Consensus        80 ~---~~~~v~~l~wsP~~~~l~-s~s~d  103 (143)
                      .   ....-..++|.|++..|. +.+..
T Consensus       158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          158 LVTENIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCceEEEEeccCCEEEEEECCC
Confidence            2   234567899998876554 44433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.98  E-value=0.68  Score=36.68  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEe-eecc--------CceEEEEE---CCCCCEEEEeec--Cc-----cee
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-AAEH--------HQATDVEW---DPTGRYVMSGVS--LW-----KTK   62 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~~~~--------~~v~~i~w---sPdG~~lat~s~--~~-----~~~   62 (143)
                      .|.+.+..+..+++ -.|+|..||...+.... .++.        ..++.+.|   .|+|+++++...  .+     +..
T Consensus        19 ~wd~~~g~~~vs~l-~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~   97 (334)
T 2p9w_A           19 IYDRTRQVFYQSNL-YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSH   97 (334)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSS
T ss_pred             cCcCCCCEEEEEec-cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccC
Confidence            68776666666665 47999999987543222 3322        13689999   799998886431  00     112


Q ss_pred             cCCcEEEEeec----CcEEEecc-----C----------CcEEEEEEeeCCCeeeecCch
Q psy5876          63 ADTGYWQWSFQ----GKIIKRFN-----S----------PTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        63 ~D~~i~iW~~~----g~~l~~~~-----~----------~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      .++.+..+|+.    |+.+....     .          ....+++.-|+|...++++.-
T Consensus        98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~  157 (334)
T 2p9w_A           98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG  157 (334)
T ss_dssp             SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES
T ss_pred             CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC
Confidence            36778889987    66554321     1          248899999999988876644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.73  E-value=0.19  Score=41.80  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=44.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-------CceE--------------Eeeec-cCceEEEEECCCCCEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-------DFSV--------------MNAAE-HHQATDVEWDPTGRYVMSGVSL   58 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-------~~~~--------------~~~~~-~~~v~~i~wsPdG~~lat~s~~   58 (143)
                      ++.+|++.+|..+.. .++.|..+|.+       +++.              +.+.. ....+.|+|+|+|++|..+.. 
T Consensus       252 iavdp~~g~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~-  329 (496)
T 3kya_A          252 ATIHPINGELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI-  329 (496)
T ss_dssp             EEECTTTCCEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred             EEEcCCCCeEEEEEC-CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC-
Confidence            356886666666655 47889999976       4432              22222 234689999999996555543 


Q ss_pred             cceecCCcEEEEeecC
Q psy5876          59 WKTKADTGYWQWSFQG   74 (143)
Q Consensus        59 ~~~~~D~~i~iW~~~g   74 (143)
                          ..+.|+.++++|
T Consensus       330 ----~~h~I~kid~dg  341 (496)
T 3kya_A          330 ----NNHYFMRSDYDE  341 (496)
T ss_dssp             ----TTTEEEEEEEET
T ss_pred             ----CCCEEEEEecCC
Confidence                356777777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.71  E-value=0.38  Score=35.66  Aligned_cols=94  Identities=14%  Similarity=0.031  Sum_probs=57.1

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ...++|+..+. +  .++.+..+|. +++.+....  ...+..+...++|+..+ ++      .++++..+|.+|+.+..
T Consensus       221 ~~~~~g~l~v~-t--~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t------~~ggl~~~d~~g~~~~~  289 (330)
T 3hxj_A          221 AISEDGTIYVT-S--LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GS------YDGHLYAINPDGTEKWN  289 (330)
T ss_dssp             EECTTSCEEEE-E--TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-EC------TTCEEEEECTTSCEEEE
T ss_pred             EECCCCeEEEE-c--CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ec------CCCCEEEECCCCcEEEE
Confidence            45677765554 3  3577777875 344443332  22344566777887554 44      36789999988887665


Q ss_pred             cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          80 FN--SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        80 ~~--~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..  ...+.++...++|...+ ++.++.++
T Consensus       290 ~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~  318 (330)
T 3hxj_A          290 FETGSWIIATPVIDENGTIYF-GTRNGKFY  318 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEE-ECTTSCEE
T ss_pred             EEcCCccccceEEcCCCEEEE-EcCCCeEE
Confidence            43  44566666667887555 55555553

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.59  E-value=0.85  Score=37.36  Aligned_cols=102  Identities=10%  Similarity=0.090  Sum_probs=56.9

Q ss_pred             CeEecCCC-EEEEEecCCCCeEEEEECCCce---EEee----ec-------cCceEEEEECCC----CCEEEEeecCcce
Q psy5876           1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFS---VMNA----AE-------HHQATDVEWDPT----GRYVMSGVSLWKT   61 (143)
Q Consensus         1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~---~~~~----~~-------~~~v~~i~wsPd----G~~lat~s~~~~~   61 (143)
                      |+|.|||+ .|.++.  ..|.|++++.+...   .+..    +.       ......|+++|+    |...++-+....-
T Consensus        19 ~a~~pdG~~rl~V~e--r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~   96 (463)
T 2wg3_C           19 ALHSGDGSQRLFILE--KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQER   96 (463)
T ss_dssp             EECCSSSSCCEEEEE--TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCS
T ss_pred             EEECCCCCeEEEEEe--CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCC
Confidence            47889996 344444  47999999754211   1111    11       235789999997    6655555421000


Q ss_pred             ----ecC--CcEEEEeecC-----------cEEEec----cCCcEEEEEEeeCCCeeeecCchh
Q psy5876          62 ----KAD--TGYWQWSFQG-----------KIIKRF----NSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        62 ----~~D--~~i~iW~~~g-----------~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                          ..+  +.|.-|.++.           +.|...    ..+.-..|+|.|||...++.++..
T Consensus        97 ~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           97 WAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             SCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             cccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence                000  1222244321           122222    134578999999999999877654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.42  E-value=2  Score=33.75  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=56.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecC-CcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD-TGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D-~~i~iW~~~g~~l~   78 (143)
                      ++.|.+..|..+.. ..+.|.+.+.+...  .+..........++.+|++.+|..+..     .. +.|...+.+|....
T Consensus       165 avd~~~g~lY~~d~-~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~-----~~~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          165 AVDWVHDKLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW-----GNTPRIEASSMDGSGRR  238 (386)
T ss_dssp             EEETTTTEEEEEET-TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC-----SSSCEEEEEETTSCSCE
T ss_pred             EEEeCCCeEEEEcC-CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc-----CCCCEEEEEeCCCCCcE
Confidence            45555555444433 24567776665322  222212246789999998776655442     23 67778888876433


Q ss_pred             ec---cCCcEEEEEEeeCCCee-eecCchhhH
Q psy5876          79 RF---NSPTFCQLRWRPRPASL-LSKEQVDKI  106 (143)
Q Consensus        79 ~~---~~~~v~~l~wsP~~~~l-~s~s~d~~i  106 (143)
                      ..   ....-..++|.|++..| ++.+....|
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I  270 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  270 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence            32   23346789999876654 444433333

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.37  E-value=0.24  Score=39.37  Aligned_cols=55  Identities=15%  Similarity=0.309  Sum_probs=38.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceE--Eeeec-cCceEEEEECC-CCCEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSV--MNAAE-HHQATDVEWDP-TGRYVMSGV   56 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~--~~~~~-~~~v~~i~wsP-dG~~lat~s   56 (143)
                      |+|||||++|..+.. ..+.|..|+++ +++.  ...+. ....-.++.++ +|++.+++.
T Consensus       226 ia~spDg~~lYvadt-~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          226 INISPDGKYVYIAEL-LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ceECCCCCEEEEEeC-CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            589999998888765 36789999975 3322  11222 24567899999 599887665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.03  E-value=1.9  Score=33.85  Aligned_cols=92  Identities=8%  Similarity=0.003  Sum_probs=56.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|.|.++.|..+.. ..+.|..++.+........  .......++++|.++.|..+..     ..+.|.+.+.+|....
T Consensus       121 l~~d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~-----~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          121 LDFHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS-----GTSRIEVANLDGAHRK  194 (386)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET-----TTTEEEECBTTSCSCE
T ss_pred             EEEecCCCeEEEEeC-CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC-----CCCeEEEEeCCCCceE
Confidence            467877776666654 4678888887754322211  2235678899987666554442     3567888888776332


Q ss_pred             e---ccCCcEEEEEEeeCCCeee
Q psy5876          79 R---FNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        79 ~---~~~~~v~~l~wsP~~~~l~   98 (143)
                      .   .....-..+++.|.+..|.
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEE
T ss_pred             EeecCCCCCCcEEEEEcCCCeEE
Confidence            2   1234567888888655433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.97  E-value=0.51  Score=36.77  Aligned_cols=99  Identities=11%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             CeEecC---CCEEEEEecCCC-----CeEEEEECCCc-----eEEee-ec-----cCceEEEEECCCCCEEEEeecCcc-
Q psy5876           1 MKLRMR---GTHIVLAELRDT-----GSLEFVDTGDF-----SVMNA-AE-----HHQATDVEWDPTGRYVMSGVSLWK-   60 (143)
Q Consensus         1 i~~SPd---G~~las~~~~~d-----g~i~iWd~~~~-----~~~~~-~~-----~~~v~~i~wsPdG~~lat~s~~~~-   60 (143)
                      |+|+||   +.+|-++.. .+     +.|..++.+..     +.+.. .+     .+....++|+|||..+++-+.... 
T Consensus        80 ia~~pdf~~~g~lYv~~~-~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~  158 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRT-VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER  158 (352)
T ss_dssp             EEECTTTTTSCEEEEEEE-ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG
T ss_pred             EEECCCCCCCCEEEEEEe-cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC
Confidence            578998   555544432 12     56777776532     22222 22     123478999999987776542110 


Q ss_pred             -e-----ecCCcEEEEeecCcE---------------EEeccCCcEEEEEEee-CCCeeeec
Q psy5876          61 -T-----KADTGYWQWSFQGKI---------------IKRFNSPTFCQLRWRP-RPASLLSK  100 (143)
Q Consensus        61 -~-----~~D~~i~iW~~~g~~---------------l~~~~~~~v~~l~wsP-~~~~l~s~  100 (143)
                       .     ...+.|.-++.+|..               +.......-+.++|.| +|...++.
T Consensus       159 ~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          159 ELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             GGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred             ccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence             0     011345555666621               2222233467789999 66655554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.94  E-value=0.23  Score=41.75  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCcE--EEEEEee
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPTF--CQLRWRP   92 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~v--~~l~wsP   92 (143)
                      +|.|.-||..+++.+-+... .++..-.....|..++.++      .|+.++.||. +|+++-+.. ...+  .-+.|..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~------~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT------GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC------CCCcEEEEECCCCCEEEEecCCCCcccCceEEEE
Confidence            57899999999987655432 2222111222456666677      5899999999 699887654 2222  2366778


Q ss_pred             CCCeeee
Q psy5876          93 RPASLLS   99 (143)
Q Consensus        93 ~~~~l~s   99 (143)
                      +|+..+.
T Consensus       539 ~G~qYv~  545 (582)
T 1flg_A          539 DGEQYLG  545 (582)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9975554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.92  E-value=2.5  Score=32.63  Aligned_cols=95  Identities=6%  Similarity=-0.040  Sum_probs=58.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|+|.++.|..+.. ..+.|..++.+...  .+..........++++|.++.|..+..     ..+.|.+.+.+|....
T Consensus        78 l~~d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~-----~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           78 LDFHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS-----GTSRIEVANLDGAHRK  151 (349)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCE
T ss_pred             EEEeccccEEEEEec-cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC-----CCCeEEEEcCCCCceE
Confidence            367777666666554 36788888876543  222212235678999987665544442     4678889998876432


Q ss_pred             e---ccCCcEEEEEEeeCCC-eeeecC
Q psy5876          79 R---FNSPTFCQLRWRPRPA-SLLSKE  101 (143)
Q Consensus        79 ~---~~~~~v~~l~wsP~~~-~l~s~s  101 (143)
                      .   .....-..+++.|.+. ..++..
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEecc
Confidence            2   1234567889998554 444543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.82  E-value=1.1  Score=36.49  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             CceEEEEECCCCCEEEEeecCcce--------------------------ecCCcEEEEeecCc-------------EEE
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKT--------------------------KADTGYWQWSFQGK-------------IIK   78 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~--------------------------~~D~~i~iW~~~g~-------------~l~   78 (143)
                      +....|+|+|||+++++.++....                          ..-+.|.-.+.+|.             .+.
T Consensus       144 H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~  223 (454)
T 1cru_A          144 HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY  223 (454)
T ss_dssp             CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE
T ss_pred             CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEE
Confidence            457899999999977765532100                          00123433455665             233


Q ss_pred             eccCCcEEEEEEeeCCCeeeec
Q psy5876          79 RFNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        79 ~~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      .........++|.|+|...++.
T Consensus       224 a~G~RNp~gla~dp~G~L~~~d  245 (454)
T 1cru_A          224 TLGHRNPQGLAFTPNGKLLQSE  245 (454)
T ss_dssp             EBCCSEEEEEEECTTSCEEEEE
T ss_pred             EECCCCcceEEECCCCCEEEEe
Confidence            3345678899999998866653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.77  E-value=1.9  Score=34.34  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             ecC-CC-EEEEEecCCCCeEEEEECC-------CceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           4 RMR-GT-HIVLAELRDTGSLEFVDTG-------DFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         4 SPd-G~-~las~~~~~dg~i~iWd~~-------~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      +|+ |+ |+.+.+  .+|.+..|++.       +.+++.+++. ..+-.|..+|...+|..+-      .+.+|..++..
T Consensus       138 ~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e------Ed~GIw~~da~  209 (355)
T 3amr_A          138 SQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE------EDEAIWKFSAE  209 (355)
T ss_dssp             CTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE------TTTEEEEEECS
T ss_pred             cCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec------ccceEEEEeCC
Confidence            674 54 455555  57999999972       3456666653 4688999999988998888      56676555643


Q ss_pred             ------CcEEEecc----CCcEEEEEE--eeCCC-eeeecCc
Q psy5876          74 ------GKIIKRFN----SPTFCQLRW--RPRPA-SLLSKEQ  102 (143)
Q Consensus        74 ------g~~l~~~~----~~~v~~l~w--sP~~~-~l~s~s~  102 (143)
                            ++++....    ...+-.|+.  .++++ +|+..++
T Consensus       210 p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          210 PDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             TTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence                  34555442    246778887  56666 5665554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.63  E-value=0.5  Score=38.94  Aligned_cols=93  Identities=14%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCC---ceEEeeec--cC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc--
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGD---FSVMNAAE--HH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK--   75 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~---~~~~~~~~--~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~--   75 (143)
                      -+|+.|+.+-   ++.||.-++..   .+.+....  .. .+..+..||+|++||..+       +.+|.|-.+- +.  
T Consensus        30 ~n~t~i~~a~---~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-------~~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           30 QNGTRIVFIQ---DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-------DNEIFVMEVPWGYSN   99 (452)
T ss_dssp             TTTTEEEEEE---TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-------SSEEEEEECCTTCSC
T ss_pred             cCCCEEEEEE---CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-------CCeEEEEEecCcccc
Confidence            4556666654   56777777652   33333321  13 688899999999999988       4455553331 11  


Q ss_pred             ----------EEEec--------cCCcEEEEEEeeCCC---eeeecCchhhHH
Q psy5876          76 ----------IIKRF--------NSPTFCQLRWRPRPA---SLLSKEQVDKIK  107 (143)
Q Consensus        76 ----------~l~~~--------~~~~v~~l~wsP~~~---~l~s~s~d~~i~  107 (143)
                                ..+.+        ...+|..+.|||.+.   .|+.-..|.+||
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir  152 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTIT  152 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEE
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEE
Confidence                      11111        145799999999874   688777777776

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.60  E-value=3.1  Score=32.84  Aligned_cols=94  Identities=9%  Similarity=-0.023  Sum_probs=56.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc------eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF------SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~------~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |+|+|.++.|..+.. ..+.|+.++.+..      +.+..........+++++.++.|..+..     ..+.|.+.+.+|
T Consensus       117 l~~d~~~~~lywsD~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~-----~~~~I~~~~~~g  190 (400)
T 3p5b_L          117 LDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS-----VLGTVSVADTKG  190 (400)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEECTTT
T ss_pred             EeeeeccCceEEEec-CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC-----CCCeEEEEeCCC
Confidence            467887776666654 3677888887641      1222212246789999996665554442     467888888888


Q ss_pred             cEEEec---cCCcEEEEEEeeCCC-eeeec
Q psy5876          75 KIIKRF---NSPTFCQLRWRPRPA-SLLSK  100 (143)
Q Consensus        75 ~~l~~~---~~~~v~~l~wsP~~~-~l~s~  100 (143)
                      +.....   ....-..++..|.+. ..++.
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence            744322   234567888888544 33443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.46  E-value=0.68  Score=38.49  Aligned_cols=97  Identities=8%  Similarity=0.028  Sum_probs=58.7

Q ss_pred             ecCCCEEEEEecCCCC------eEEEEECCC-c--------eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876           4 RMRGTHIVLAELRDTG------SLEFVDTGD-F--------SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYW   68 (143)
Q Consensus         4 SPdG~~las~~~~~dg------~i~iWd~~~-~--------~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~   68 (143)
                      +|+|++|.++.. .++      .|.+.+... +        ..+..+  .....++.+|++++|..+..     .++.|.
T Consensus       201 d~~G~~lyvad~-~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~--~~p~giavdp~~g~LYvtd~-----~~g~V~  272 (496)
T 3kya_A          201 ADEAEYMIVAID-YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY--KQCNGATIHPINGELYFNSY-----EKGQVF  272 (496)
T ss_dssp             BCTTCEEEEEEC-CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE--SCCCCEEECTTTCCEEEEET-----TTTEEE
T ss_pred             CCCCCEEEEEeC-CCCCcccCceEEEEecCCCCceeecccceeeccC--CCceEEEEcCCCCeEEEEEC-----CCCEEE
Confidence            999997777763 221      255665333 1        222222  34567889996665555442     466788


Q ss_pred             EEeec-------Cc-E--------------EEecc-CCcEEEEEEeeCCC-eeeecCchhhHHh
Q psy5876          69 QWSFQ-------GK-I--------------IKRFN-SPTFCQLRWRPRPA-SLLSKEQVDKIKK  108 (143)
Q Consensus        69 iW~~~-------g~-~--------------l~~~~-~~~v~~l~wsP~~~-~l~s~s~d~~i~~  108 (143)
                      .+|++       +. .              +.... ...-+.++|+|+|. ..++......|++
T Consensus       273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            99986       22 2              22222 23457899999999 4677666666664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=92.37  E-value=2.3  Score=32.58  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=55.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ++.|.+..|..+.. ..+.|.+.+.+..  +.+..........++.+|.+.+|..+...    ..+.|...+.+|.....
T Consensus        85 avd~~~g~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~----~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           85 ACDWLGEKLYWTDS-ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS----SSCEEEEEETTSCSCEE
T ss_pred             EEEcCCCeEEEEEC-CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC----CCCEEEEEEcCCCCeEE
Confidence            44554444444332 3567777776642  22222223467899999987665544410    24567777888764332


Q ss_pred             c---cCCcEEEEEEeeCCCee-eecCchhhH
Q psy5876          80 F---NSPTFCQLRWRPRPASL-LSKEQVDKI  106 (143)
Q Consensus        80 ~---~~~~v~~l~wsP~~~~l-~s~s~d~~i  106 (143)
                      .   ....-+.++|.|++..| ++.+....|
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence            2   23345789999866544 454444333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.85  E-value=0.62  Score=34.47  Aligned_cols=83  Identities=11%  Similarity=0.025  Sum_probs=49.4

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc--CC
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN--SP   83 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~--~~   83 (143)
                      ..|.+++  .+|.|..+|.. ++......  ...+.++...++|+.++ ++      .++++..+|.+|+.+....  ..
T Consensus       108 ~~l~v~t--~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt------~~~~l~~~d~~g~~~~~~~~~~~  177 (330)
T 3hxj_A          108 DILYVTS--MDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GS------NDNYLYAINPDGTEKWRFKTNDA  177 (330)
T ss_dssp             TEEEEEC--TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-EC------TTSEEEEECTTSCEEEEEECSSC
T ss_pred             CEEEEEe--cCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-Ec------CCCEEEEECCCCCEeEEEecCCC
Confidence            3455555  37889999988 65544432  23456677888888555 44      2567778877766554332  33


Q ss_pred             cEEEEEEeeCCCeeeec
Q psy5876          84 TFCQLRWRPRPASLLSK  100 (143)
Q Consensus        84 ~v~~l~wsP~~~~l~s~  100 (143)
                      .+.++...+++...+..
T Consensus       178 ~~~~~~~d~~g~l~v~t  194 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS  194 (330)
T ss_dssp             CCSCCEECTTCCEEEES
T ss_pred             ceeeeEEcCCCEEEEEe
Confidence            44455555566544443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=91.60  E-value=0.43  Score=39.87  Aligned_cols=29  Identities=14%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             cCCC---EEEEEecCCCCeEEEEECCCceEEeee
Q psy5876           5 MRGT---HIVLAELRDTGSLEFVDTGDFSVMNAA   35 (143)
Q Consensus         5 PdG~---~las~~~~~dg~i~iWd~~~~~~~~~~   35 (143)
                      ++|+   .++.++  .+|.+...|..+++.+-..
T Consensus       311 ~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          311 VNGKMTPLLSHID--RNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             ETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEE
T ss_pred             cCCcEEEEEEEeC--CCcEEEEEECCCCCEEeee
Confidence            4674   455666  5899999999998876543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=91.03  E-value=4.2  Score=31.10  Aligned_cols=92  Identities=8%  Similarity=0.007  Sum_probs=53.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce---EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS---VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~---~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      .|.|.++.|.-+.. ..+.|..++.+...   .+..........+++++.++.|..+..     ..+.|.+.+.+|....
T Consensus        41 d~d~~~~~lyw~D~-~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~-----~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           41 DFVFSHGLIYWSDV-SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS-----ETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEGGGTEEEEEET-TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCE
T ss_pred             EEEeCCCEEEEEEC-CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC-----CCCEEEEEECCCCcEE
Confidence            56776555555544 35677777766431   222222235678999986665544432     4678889999876332


Q ss_pred             e---ccCCcEEEEEEeeCCC-eeee
Q psy5876          79 R---FNSPTFCQLRWRPRPA-SLLS   99 (143)
Q Consensus        79 ~---~~~~~v~~l~wsP~~~-~l~s   99 (143)
                      .   .....-..+++.|.+. ...+
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~t  139 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWT  139 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEE
Confidence            2   2234557788887543 3344

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.67  E-value=1.3  Score=33.93  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=44.8

Q ss_pred             eEecCCCEEEEEe--cCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           2 KLRMRGTHIVLAE--LRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~--~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .|+|+|++|+-+.  ...+..|..-+++..  +.+...   .+  .+|+|+|+.|.-.+.     ....|..-+++|...
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~---~~--~~~~~~g~~iy~t~~-----g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH---YL--FTCNTSDRYFYYNNP-----KNGQLYRYDTASQSE  179 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS---CC--CCSEEETTEEEEECT-----TTCCEEEEETTTTEE
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC---Cc--eEeeEECCEEEEEeC-----CCceEEEEECCCCCE
Confidence            5889999998765  112345555555532  223221   22  457888998875553     244555556655432


Q ss_pred             EeccCCcEEEEEEeeCCCeee
Q psy5876          78 KRFNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        78 ~~~~~~~v~~l~wsP~~~~l~   98 (143)
                      ......... ..+.|++..|+
T Consensus       180 ~~l~~~~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          180 ALFYDCNCY-KPVVLDDTNVY  199 (302)
T ss_dssp             EEEECSCEE-EEEEEETTEEE
T ss_pred             EEEeCCCcc-ceeeecCCEEE
Confidence            222222222 23446666555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=90.63  E-value=0.92  Score=38.52  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCcE--EEEEEee
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPTF--CQLRWRP   92 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~v--~~l~wsP   92 (143)
                      +|.|.-||..+++.+-+.+. ...........|.+++.++      .|+.++.||. +|+.+.+.. ...+  .-+.+..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~------~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~  510 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT------AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC------CcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence            37899999999988765432 3344445666788888887      6999999999 588887653 1111  2344456


Q ss_pred             CCCeee
Q psy5876          93 RPASLL   98 (143)
Q Consensus        93 ~~~~l~   98 (143)
                      +|+..+
T Consensus       511 ~G~~yv  516 (668)
T 1kv9_A          511 AGRQYV  516 (668)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            776443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.43  E-value=2.9  Score=33.01  Aligned_cols=63  Identities=11%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             CceEEEEECCCCCEEEEeecCcce-------ecCCcEEEEeecCc----------EEEeccCCcEEEEEEeeCCCeeeec
Q psy5876          38 HQATDVEWDPTGRYVMSGVSLWKT-------KADTGYWQWSFQGK----------IIKRFNSPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        38 ~~v~~i~wsPdG~~lat~s~~~~~-------~~D~~i~iW~~~g~----------~l~~~~~~~v~~l~wsP~~~~l~s~  100 (143)
                      +....|+|.|||.++++.++....       ..-+.|.-.+.+|.          .+..........++|.|+|...++.
T Consensus       140 H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          140 HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence            456789999999977776531100       01233433444554          2333334456789999998866654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.74  E-value=0.84  Score=35.11  Aligned_cols=90  Identities=8%  Similarity=0.047  Sum_probs=49.0

Q ss_pred             eEecCCCEEEEEecCC------------CCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           2 KLRMRGTHIVLAELRD------------TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         2 ~~SPdG~~las~~~~~------------dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      .|+|+|++|.=+..+.            +..|+..+++..+... .....  ...|+|+|++|+-.....  .....|+.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~--~~~~s~~g~~Iy~~~~~~--~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP--CIYASLIGNYIYYLHYDT--QTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC--EEEEEEETTEEEEEEESS--SSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC--ccEEEEeCCEEEEEeecC--CCCceEEE
Confidence            3689999998876421            2356666666543211 11111  237899999988665100  02334555


Q ss_pred             EeecCcEEEeccCCcEEEEEEeeCCCeee
Q psy5876          70 WSFQGKIIKRFNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        70 W~~~g~~l~~~~~~~v~~l~wsP~~~~l~   98 (143)
                      -+++|....+.....+  .+|+|+++.|.
T Consensus       134 ~~~dGs~~~~lt~~~~--~~~~~~g~~iy  160 (302)
T 3s25_A          134 IRIDGEEKKKIKNHYL--FTCNTSDRYFY  160 (302)
T ss_dssp             EETTSCCCEEEESSCC--CCSEEETTEEE
T ss_pred             EECCCCCeEEEeCCCc--eEeeEECCEEE
Confidence            5556754433322222  45677777776

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.41  E-value=1.1  Score=38.16  Aligned_cols=57  Identities=11%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CeEecCCCEEEEEecC----------CCCeEEEEECCCceE--Eeeec-cCceEEEEECCCCCEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELR----------DTGSLEFVDTGDFSV--MNAAE-HHQATDVEWDPTGRYVMSGVS   57 (143)
Q Consensus         1 i~~SPdG~~las~~~~----------~dg~i~iWd~~~~~~--~~~~~-~~~v~~i~wsPdG~~lat~s~   57 (143)
                      |.|+|+|++++.-.-+          .+..+...+..++++  +.+.+ ...++.++|+|||++|....+
T Consensus       481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence            5799999966553210          012344455555553  33333 357999999999999888765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=89.33  E-value=6.2  Score=34.47  Aligned_cols=94  Identities=9%  Similarity=-0.033  Sum_probs=56.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc------eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF------SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~------~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |+|.+.+..|..+.. ..+.|+.++++..      +.+..........|++++.|+.|..+..     ..+.|.+.+++|
T Consensus       429 l~~d~~~~~lY~sD~-~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~-----~~~~I~v~~ldG  502 (791)
T 3m0c_C          429 LDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS-----VLGTVSVADTKG  502 (791)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET-----TTTEEEEEETTS
T ss_pred             EeecccCCeeEEeec-cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec-----CCCeEEEEeCCC
Confidence            356675555555544 3567777776632      1222112245678999998877666553     467888999988


Q ss_pred             cEEEec---cCCcEEEEEEeeCC-Ceeeec
Q psy5876          75 KIIKRF---NSPTFCQLRWRPRP-ASLLSK  100 (143)
Q Consensus        75 ~~l~~~---~~~~v~~l~wsP~~-~~l~s~  100 (143)
                      +....+   ....-..|++.|.. ...++.
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEec
Confidence            754332   23456788888864 444443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=88.55  E-value=7.9  Score=32.95  Aligned_cols=89  Identities=10%  Similarity=0.031  Sum_probs=57.0

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEee----------eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNA----------AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~----------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      .++|+.-+ |+  .++-|..||..+++....          .....|.+++.+++|+.|-.|+      .++++.+++.+
T Consensus       365 d~~g~lWi-Gt--~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt------~~~Gl~~~d~~  435 (795)
T 4a2l_A          365 DKDKNLWI-GT--NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT------HAGGLSILHRN  435 (795)
T ss_dssp             CTTSCEEE-EE--SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE------TTTEEEEEETT
T ss_pred             CCCCCEEE-EE--CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe------CcCceeEEeCC
Confidence            45665444 44  255688899876543221          1234689999999999445555      36789999986


Q ss_pred             CcEEEec-------cCCcEEEEEEeeCCCeeeecC
Q psy5876          74 GKIIKRF-------NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~~l~~~-------~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      +..+...       ....|.++...++|...+...
T Consensus       436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~  470 (795)
T 4a2l_A          436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL  470 (795)
T ss_dssp             TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred             CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence            4333322       235799999888888666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.34  E-value=1.7  Score=33.81  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             eEEEEECCCCCEEEEeecCcc-------eecCCcEEEEeecCc---------------EEEeccCCcEEEEEEee-CCCe
Q psy5876          40 ATDVEWDPTGRYVMSGVSLWK-------TKADTGYWQWSFQGK---------------IIKRFNSPTFCQLRWRP-RPAS   96 (143)
Q Consensus        40 v~~i~wsPdG~~lat~s~~~~-------~~~D~~i~iW~~~g~---------------~l~~~~~~~v~~l~wsP-~~~~   96 (143)
                      ...++|+|||.++++-++...       ....+.|.-.+.+|.               .+........+.++|.| +|..
T Consensus       132 ~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l  211 (353)
T 2g8s_A          132 GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNAL  211 (353)
T ss_dssp             CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEE
T ss_pred             CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCE
Confidence            467999999986666542100       001234555566664               12222345678999999 6665


Q ss_pred             eee
Q psy5876          97 LLS   99 (143)
Q Consensus        97 l~s   99 (143)
                      .++
T Consensus       212 ~~~  214 (353)
T 2g8s_A          212 WLN  214 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=88.22  E-value=7.6  Score=32.70  Aligned_cols=93  Identities=8%  Similarity=-0.005  Sum_probs=55.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc---eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+|+|+++.|..+.. ..+.|..++.+..   +.+..........++.++.++.|..+..     ..+.|.+.+.+|...
T Consensus        45 ld~~~~~~~ly~sD~-~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~-----~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           45 VDFVFSHGLIYWSDV-SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS-----ETNRIEVSNLDGSLR  118 (619)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSC
T ss_pred             EEEEeCCCEEEEEEC-CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeC-----CCCEEEEEECCCCCE
Confidence            467887777776665 3677888887643   2222222246889999997776666553     467888999988643


Q ss_pred             Ee---ccCCcEEEEEEeeC-CCeeee
Q psy5876          78 KR---FNSPTFCQLRWRPR-PASLLS   99 (143)
Q Consensus        78 ~~---~~~~~v~~l~wsP~-~~~l~s   99 (143)
                      ..   .....-..+++.|. |...+|
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~t  144 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWT  144 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEe
Confidence            22   12233446666665 333344

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.06  E-value=1.8  Score=36.58  Aligned_cols=75  Identities=9%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CC--cEEEEEEee
Q psy5876          18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SP--TFCQLRWRP   92 (143)
Q Consensus        18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~--~v~~l~wsP   92 (143)
                      +|.|.-||..+++.+-+.+. .+...-.....|..+..++      .|+.++.||. +|+++-+.. ..  ...-+.|..
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt------~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~  525 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT------LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH  525 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC------CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence            37888899998887655432 1221111223455666676      5899999998 699887653 11  123356677


Q ss_pred             CCCeee
Q psy5876          93 RPASLL   98 (143)
Q Consensus        93 ~~~~l~   98 (143)
                      +|+..+
T Consensus       526 ~G~qyv  531 (599)
T 1w6s_A          526 KGTQYV  531 (599)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            887544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=87.56  E-value=1.3  Score=37.10  Aligned_cols=29  Identities=24%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             cCCC---EEEEEecCCCCeEEEEECCCceEEeee
Q psy5876           5 MRGT---HIVLAELRDTGSLEFVDTGDFSVMNAA   35 (143)
Q Consensus         5 PdG~---~las~~~~~dg~i~iWd~~~~~~~~~~   35 (143)
                      .+|+   .|+.++  .+|.+..+|..+++.+-..
T Consensus       331 ~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          331 KDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             SSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEEEEC--CCceEEEEECCCCCEeccc
Confidence            4675   566676  5899999999998877543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=86.79  E-value=14  Score=31.45  Aligned_cols=88  Identities=10%  Similarity=0.121  Sum_probs=57.7

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEee------eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNA------AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      .++|+.|-+|+  .++-|..+|..+++...-      .....|.++..+++|+..+...        +++.+|+......
T Consensus       414 d~~g~~lWigt--~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          414 DEKKSLVYIGT--HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSF  483 (795)
T ss_dssp             ETTTTEEEEEE--TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEE
T ss_pred             cCCCCEEEEEe--CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeE
Confidence            46777455565  246788999887654322      1234689999999998655432        4788898864433


Q ss_pred             Eecc---------CCcEEEEEEeeCCCeeeecC
Q psy5876          78 KRFN---------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        78 ~~~~---------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ....         ...|.++...++|...+...
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence            3221         25689999998998766544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=86.63  E-value=16  Score=31.95  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=55.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |++.+.|+.|..+.. ..+.|++.+++....  +..........|+.+|.+.+|.-+...    ..+.|...+++|....
T Consensus       476 LAvD~~~~~LY~tD~-~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g----~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             EEEETTTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEE
T ss_pred             eeeeecCCcEEEEec-CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC----CCCeEEEEecCCCceE
Confidence            355666666655544 367788888764322  222223458899999986655544310    2256777888887544


Q ss_pred             ec---cCCcEEEEEEeeCCCeee
Q psy5876          79 RF---NSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        79 ~~---~~~~v~~l~wsP~~~~l~   98 (143)
                      ..   ....-..|++.|....|.
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEE
Confidence            33   234567888887665544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.23  E-value=1.1  Score=38.43  Aligned_cols=94  Identities=9%  Similarity=-0.065  Sum_probs=55.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC----ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD----FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG   74 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~----~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g   74 (143)
                      |+|+|+++.|..+.. ..+.|+.++++.    ........  ......|++++.++.|..+..     ..+.|.+.+.+|
T Consensus       411 la~d~~~~~Ly~sD~-~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~-----~~~~I~v~d~dg  484 (699)
T 1n7d_A          411 LDTEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS-----VLGTVSVADTKG  484 (699)
T ss_dssp             CEEETTTTEEEECCT-TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT-----TTSCEEEEBSSS
T ss_pred             EccccccCeEEEEec-CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec-----cCCeEEEEecCC
Confidence            578888887777654 367888888764    11111111  123567888876554444332     467899999988


Q ss_pred             cEEEecc---CCcEEEEEEeeCCC-eeeec
Q psy5876          75 KIIKRFN---SPTFCQLRWRPRPA-SLLSK  100 (143)
Q Consensus        75 ~~l~~~~---~~~v~~l~wsP~~~-~l~s~  100 (143)
                      ..+....   ...-..+++.|.+. +.++.
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence            7544321   23445677887543 34443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=84.82  E-value=0.67  Score=39.74  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ++.+.++.|..+.. ..+.|.+.+.+........  .......|+++|++.+|..+...    ..+.|...+++|.....
T Consensus       459 avD~~~g~LY~tD~-~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~----~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          459 AVDWIHSNIYWTDS-VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             ECCCSSSBCEECCT-TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS----SSCCEEBCCSSSCCCCE
T ss_pred             EEEeeCCcEEEEec-cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC----CCCeEEEEeCCCCCeeE
Confidence            34444444433332 3577888887654322222  12356789999976655443310    12577777777764332


Q ss_pred             c---cCCcEEEEEEeeCCCee-eecCchh
Q psy5876          80 F---NSPTFCQLRWRPRPASL-LSKEQVD  104 (143)
Q Consensus        80 ~---~~~~v~~l~wsP~~~~l-~s~s~d~  104 (143)
                      .   ....-..|+|.|++..| ++.+...
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence            2   12334578899876544 4444333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=84.80  E-value=5.6  Score=30.15  Aligned_cols=64  Identities=11%  Similarity=0.118  Sum_probs=37.7

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeecc-----------CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-----------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q   73 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-----------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~   73 (143)
                      ++..|.+++  .+|.|..+|..+++.+-+.+.           ..+.. ....++..+..++      .++.+..+|. +
T Consensus        52 ~~~~v~~~~--~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~------~~g~l~a~d~~t  122 (376)
T 3q7m_A           52 ADNVVYAAD--RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGS------EKAQVYALNTSD  122 (376)
T ss_dssp             ETTEEEEEC--TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEE------TTSEEEEEETTT
T ss_pred             ECCEEEEEc--CCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEc------CCCEEEEEECCC
Confidence            345666666  478999999998887654322           11221 1222344555565      3667777776 4


Q ss_pred             CcEEE
Q psy5876          74 GKIIK   78 (143)
Q Consensus        74 g~~l~   78 (143)
                      |+.+-
T Consensus       123 G~~~W  127 (376)
T 3q7m_A          123 GTVAW  127 (376)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            66554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=83.95  E-value=3.5  Score=34.54  Aligned_cols=71  Identities=14%  Similarity=-0.017  Sum_probs=44.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++.++|+.++.||. .++.+++||..+.+  .+...+.. .-.+++..|||+.++.|+.......-+.+.+||..
T Consensus       249 ~~~~~g~lyv~GG~-~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          249 SMDGNGQIVVTGGN-DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EECTTSCEEEECSS-STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cCCCCCCEEEeCCC-CCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            45689999999996 35689999977644  22222222 12345667899999998831110012467778774

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=82.80  E-value=16  Score=28.96  Aligned_cols=91  Identities=14%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             EEEEecCC--CCeEEEEECC--CceEEeee--------cc-CceEEEEE--CCC-CCEEEEeecCcceecCCcEEEEeec
Q psy5876          10 IVLAELRD--TGSLEFVDTG--DFSVMNAA--------EH-HQATDVEW--DPT-GRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus        10 las~~~~~--dg~i~iWd~~--~~~~~~~~--------~~-~~v~~i~w--sPd-G~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ||.++...  +++|.+++++  +.+ +...        .. ..+..+|.  +|+ |++.+..+.     .++.+..|++.
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-----k~G~~~q~~l~  161 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-----KEGEFEQYELK  161 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-----SSSEEEEEEEE
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-----CCCeEEEEEEE
Confidence            44444324  5789999763  433 2222        11 45667777  884 664444443     57788888772


Q ss_pred             --------CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          74 --------GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        74 --------g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                              +++++++. ...+-.+..-|....|.-+.++..|
T Consensus       162 ~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GI  203 (355)
T 3amr_A          162 ADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAI  203 (355)
T ss_dssp             ECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEE
T ss_pred             eCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceE
Confidence                    24556554 4567778888877777777666444

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.77  E-value=4.3  Score=34.56  Aligned_cols=58  Identities=10%  Similarity=0.228  Sum_probs=36.7

Q ss_pred             CeEecCCCEEEEEecC----------CCCeEEEEECCCceEEe--eec-cCceEEEEECCCCCEEEEeecC
Q psy5876           1 MKLRMRGTHIVLAELR----------DTGSLEFVDTGDFSVMN--AAE-HHQATDVEWDPTGRYVMSGVSL   58 (143)
Q Consensus         1 i~~SPdG~~las~~~~----------~dg~i~iWd~~~~~~~~--~~~-~~~v~~i~wsPdG~~lat~s~~   58 (143)
                      |.|.|+|++.+...-+          ..+.+..++..++++..  ... ...++.++||||+++|..+.+-
T Consensus       481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH  551 (592)
T 4a9v_A          481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH  551 (592)
T ss_dssp             EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred             eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence            4688999877632110          01246666666665432  222 2468999999999998887753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.41  E-value=5.3  Score=35.53  Aligned_cols=32  Identities=9%  Similarity=0.013  Sum_probs=26.1

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA   35 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~   35 (143)
                      +..++..+|.+-+  .|+++|+|++.+++++.+.
T Consensus       242 ~~~~~~~~lftl~--~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          242 IFLSTYNVLVMLS--LDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEETTTTEEEEEE--TTCEEEEEETTTTEEEEEE
T ss_pred             eecCCCcEEEEEE--CCCEEEEEECCCCCeEeee
Confidence            3467788888877  6999999999999887653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=82.20  E-value=5.3  Score=33.77  Aligned_cols=70  Identities=14%  Similarity=0.139  Sum_probs=46.8

Q ss_pred             eEecCCCEEEEEecCCCC-------------------eEEEEECCCceEEeeec---c--------CceEEEEECCCCC-
Q psy5876           2 KLRMRGTHIVLAELRDTG-------------------SLEFVDTGDFSVMNAAE---H--------HQATDVEWDPTGR-   50 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg-------------------~i~iWd~~~~~~~~~~~---~--------~~v~~i~wsPdG~-   50 (143)
                      ++.|++..+..+.  .++                   .|.-+|..+++.+-.++   +        .++.......||+ 
T Consensus       236 a~d~~~~~vy~~~--~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          236 AYDPELDLLYVGT--GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             EEETTTTEEEEEC--CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             EEcCCCCEEEEeC--CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            5677878887775  344                   48899999998765542   1        1222233335776 


Q ss_pred             --EEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876          51 --YVMSGVSLWKTKADTGYWQWSF-QGKIIKR   79 (143)
Q Consensus        51 --~lat~s~~~~~~~D~~i~iW~~-~g~~l~~   79 (143)
                        .++.++      .++.++++|. +|+++..
T Consensus       314 ~~~v~~~~------~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          314 RKVLMQAP------KNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEEEECC------TTSEEEEEETTTCCEEEE
T ss_pred             EEEEEEEC------CCCEEEEEECCCCCEecc
Confidence              677777      5889999998 6888743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.74  E-value=17  Score=28.49  Aligned_cols=92  Identities=11%  Similarity=0.027  Sum_probs=52.8

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      ++.+.++.|..+.. ..+.|.+.+.+....  +..........|+.+|.+.+|.-....    ..+.|...+.+|.....
T Consensus       165 avD~~~~~lY~~d~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~----~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          165 AVDWIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS----SSCCEEEEETTSCSCEE
T ss_pred             EEEecCCceEEEEC-CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC----CCCEEEEEeCCCCccEE
Confidence            44454444444332 356777777664322  211123457899999977666544310    23577788888764333


Q ss_pred             c---cCCcEEEEEEeeCCCeee
Q psy5876          80 F---NSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        80 ~---~~~~v~~l~wsP~~~~l~   98 (143)
                      .   ....-..|++.|++..|.
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEE
T ss_pred             EEECCCCceEEEEEEeCCCEEE
Confidence            2   234567899998776554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=81.30  E-value=22  Score=29.51  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E--E
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I--I   77 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~--l   77 (143)
                      .+|..+.||.=.   ..+++|+|+++-..+..+. ...|.--.|-.+ +.|+-.+       ++.|+-|++.|.  .  +
T Consensus        73 MnP~~~iiALra---g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT-------~taVyHWsi~~~s~P~kv  141 (494)
T 1bpo_A           73 MNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-------DNAVYHWSMEGESQPVKM  141 (494)
T ss_dssp             ECSSSSCEEEEE---TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEEC-------SSEEEEEESSSSCCCEEE
T ss_pred             eCCCCcEEEEec---CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEc-------CCeeEEecccCCCCchhh
Confidence            368888888864   4799999999987777654 346777778744 4555555       668899999763  3  2


Q ss_pred             Eecc----CCcEEEEEEeeCCCeeee
Q psy5876          78 KRFN----SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        78 ~~~~----~~~v~~l~wsP~~~~l~s   99 (143)
                      +..+    ...|....-+|+.++++=
T Consensus       142 FdR~~~L~~~QIInY~~d~~~kW~~l  167 (494)
T 1bpo_A          142 FDRHSSLAGCQIINYRTDAKQKWLLL  167 (494)
T ss_dssp             EECCGGGTTCEEEEEEECTTSSEEEE
T ss_pred             eecchhcccceEEEEEECCCCCeEEE
Confidence            2222    457888888899898874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=80.48  E-value=21  Score=30.22  Aligned_cols=90  Identities=12%  Similarity=0.159  Sum_probs=56.8

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      .++|+.. .|+  . +.|..+|..+++.  .....     ...|.++..+++|+..+...       ++++..++.++..
T Consensus       458 d~~g~lw-igt--~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          458 DKNKKIW-IGT--H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-------GGGVGIYTPDMQL  526 (781)
T ss_dssp             CTTSEEE-EEE--T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-------SSCEEEECTTCCE
T ss_pred             CCCCCEE-EEE--C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-------CCCEEEEeCCCCe
Confidence            3455543 344  2 4577888776432  22211     24689999999999766443       4678889887554


Q ss_pred             EEec------cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          77 IKRF------NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        77 l~~~------~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      +...      ..+.|.++...++|...++.. .+.
T Consensus       527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl  560 (781)
T 3v9f_A          527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL  560 (781)
T ss_dssp             EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred             EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence            4432      135789999888998766544 444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.8
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.79
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.76
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.71
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.71
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.71
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.7
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.7
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.69
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.67
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.66
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.61
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.6
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.59
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.58
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.58
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.52
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.51
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.51
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.49
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.49
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.47
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.39
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.37
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.35
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.34
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.33
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.3
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.29
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.28
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.28
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.24
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.24
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.2
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.09
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.09
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.69
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.16
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.84
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.64
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.18
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.82
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.53
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.39
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.09
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.07

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.4e-19  Score=140.30  Aligned_cols=98  Identities=14%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--------ccCceEEEEECCCCCEEEEeecCcceecCC---cEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--------EHHQATDVEWDPTGRYVMSGVSLWKTKADT---GYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~---~i~i   69 (143)
                      ++||||| +||+|+  .||+|+|||+.+++.+..+        |...|++++|||||++|++|+      .|+   .+++
T Consensus       190 v~~s~dg-~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs------~D~t~~~i~l  260 (393)
T d1sq9a_         190 VDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH------DSNSFGCITL  260 (393)
T ss_dssp             EEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE------EETTEEEEEE
T ss_pred             EEECCCC-EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeec------CCCCcceeee
Confidence            4789998 889998  6999999999998876543        224799999999999999999      465   4899


Q ss_pred             Eeec-CcEEEec---------------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          70 WSFQ-GKIIKRF---------------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        70 W~~~-g~~l~~~---------------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ||++ |+++...               |.+.|++++|+|+++.|+|++.|++||
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            9994 7766543               345799999999999999999999988

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=5.5e-19  Score=131.87  Aligned_cols=99  Identities=12%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      ++|+|+|++|++|+  .||.|++||....+.+..+.    ...++.++|+|+|++|++|+      .|+.|++||+ +++
T Consensus       232 v~~~p~~~~l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~------~dg~i~iwd~~~~~  303 (340)
T d1tbga_         232 ICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY------DDFNCNVWDALKAD  303 (340)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE------TTSCEEEEETTTCC
T ss_pred             EEECCCCCEEEEEe--CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE------CCCEEEEEECCCCc
Confidence            47999999999999  69999999999887765542    24699999999999999999      6999999999 588


Q ss_pred             EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ++..+  |...|.+++|+|+++.|+|++.|+.|+
T Consensus       304 ~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence            88765  467899999999999999999998874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.6e-18  Score=133.36  Aligned_cols=99  Identities=14%  Similarity=0.300  Sum_probs=82.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~   76 (143)
                      ++|||||++||+|+  .||.|+|||..+++  ++..+  |..+|++++|+|+|++||+|+      .|+.++|||+++..
T Consensus        13 ~~~s~dg~~la~~~--~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s------~D~~i~vWd~~~~~   84 (371)
T d1k8kc_          13 HAWNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG------TDRNAYVWTLKGRT   84 (371)
T ss_dssp             EEECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE------TTSCEEEEEEETTE
T ss_pred             EEECCCCCEEEEEe--CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE------CCCeEEEEeecccc
Confidence            48999999999998  58999999987654  44444  335799999999999999999      69999999996432


Q ss_pred             -E--Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 -I--KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 -l--~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                       .  ...  +...|.+++|+|+++.|++++.|++++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             cccccccccccccccccccccccccceeecccCcce
Confidence             2  222  356899999999999999999998876

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4e-18  Score=130.37  Aligned_cols=99  Identities=11%  Similarity=0.132  Sum_probs=86.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~   78 (143)
                      ++|+|+|++|++++  .||.+++||+.+.+......| ..|++++|+|||++|++++      .|+.+++||. +|+.+.
T Consensus       230 l~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s------~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         230 LGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG------KDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEEE
T ss_pred             EEEcccccccceec--cccccccccccccccccccccccccceEEECCCCCEEEEEe------CCCeEEEEECCCCCEEE
Confidence            47999999999998  689999999998877655443 5799999999999999999      6999999999 477776


Q ss_pred             ec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF-NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      .. +...|.+++|+|++++|+|++.|+.|+
T Consensus       302 ~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~  331 (337)
T d1gxra_         302 QSKESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             EccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            54 577899999999999999999998774

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.71  E-value=4.9e-17  Score=124.40  Aligned_cols=99  Identities=17%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             CeEecCCCE-EEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTH-IVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~-las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++|+|+|++ |++|+  .||.|++||..+++.+....  ...|++++|+|+|++|++++      .|+.+++||.. +..
T Consensus       152 v~~~~~~~~~l~sgs--~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~------~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         152 VDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG------GDGTIVLYNGVDGTK  223 (311)
T ss_dssp             EEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCE
T ss_pred             ccccccceeeecccc--cccccccccccccccccccccccccccccccCcccccccccc------ccccccccccccccc
Confidence            479999996 66777  68999999999988777653  35799999999999999999      69999999994 665


Q ss_pred             EEec---------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF---------NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~---------~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +..+         |...|.+++|+|+++.|+|++.|+.|+
T Consensus       224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK  263 (311)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cccccccccccccccccccccccCCCCCEEEEEeCCCeEE
Confidence            5543         245799999999999999999999886

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=3.5e-17  Score=126.90  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=80.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-c
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-K   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~   75 (143)
                      |+|||+|++|++|+  .|++|+|||+.++..  ....  +...+++++|+|+|++|++++      .|+.+++|++.. .
T Consensus        57 l~fsp~~~~l~s~s--~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s------~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          57 VDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS------GSRVISICYFEQEN  128 (371)
T ss_dssp             EEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE------TTSSEEEEEEETTT
T ss_pred             EEECCCCCEEEEEE--CCCeEEEEeecccccccccccccccccccccccccccccceeec------ccCcceeeeeeccc
Confidence            57999999999999  699999999886543  3322  235799999999999999999      689999999852 2


Q ss_pred             EE---Ee---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 II---KR---FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l---~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..   ..   .+...|.+++|+|+++.|++++.|++|+
T Consensus       129 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_         129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccccccccceeccccCcEEE
Confidence            11   11   2356899999999999999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4.3e-17  Score=119.23  Aligned_cols=96  Identities=10%  Similarity=0.242  Sum_probs=81.6

Q ss_pred             ecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876           4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF   80 (143)
Q Consensus         4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~   80 (143)
                      .++|.++++++  .||.|++||..+++++.++.  ...|++++|+|+|++|++++      .|+.|+|||+ +++++..+
T Consensus       214 ~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         214 GKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA------DDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             ---CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE------TTTEEEEECCTTSCCCEEE
T ss_pred             ccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE------CCCeEEEEECCCCcEEEEE
Confidence            45677899988  69999999999999887753  35799999999999999999      6999999999 47777665


Q ss_pred             --cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 --NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        |...|.+++|+|+++.|+|++.|++|+
T Consensus       286 ~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~  314 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVK  314 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence              477999999999999999999998874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=2.5e-17  Score=124.14  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=82.1

Q ss_pred             eEec-CCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec
Q psy5876           2 KLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF   80 (143)
Q Consensus         2 ~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~   80 (143)
                      .||| ||+++|+++   +|.|.+||+++++.+...+...|.+++|||||++|++++..    .++.+++||..+..+...
T Consensus         9 ~fSP~dG~~~a~~~---~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~----~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           9 DFSPLDGDLIAFVS---RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR----EGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             EEEECGGGCEEEEE---TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET----TEEEEEEEETTTCCEEEC
T ss_pred             cccCCCCCEEEEEE---CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcC----CCCEEEEEECCCCcEEEe
Confidence            5999 999999987   68999999998887776555689999999999999988841    123689999976655443


Q ss_pred             --cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          81 --NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        +...+..++|+|+|+.|++++.+..++
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~  110 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIM  110 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccc
Confidence              467899999999999999999888665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=5.3e-17  Score=124.20  Aligned_cols=98  Identities=16%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--------------------cCceEEEEECCCCCEEEEeecCcc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--------------------HHQATDVEWDPTGRYVMSGVSLWK   60 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--------------------~~~v~~i~wsPdG~~lat~s~~~~   60 (143)
                      |+|||||++||+|+   ||+|+|||+.+++.+.++.                    ...|++++|+|||++|++|+    
T Consensus        68 l~fs~dg~~lasg~---d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~----  140 (388)
T d1erja_          68 VKFSNDGEYLATGC---NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA----  140 (388)
T ss_dssp             EEECTTSSEEEEEC---BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE----
T ss_pred             EEECCCCCEEEEEe---CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc----
Confidence            58999999999986   7999999999877655431                    13489999999999999999    


Q ss_pred             eecCCcEEEEeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          61 TKADTGYWQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        61 ~~~D~~i~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                        .|+.|++|+.. ++.+...  +...|..+.|+|++..+++++.++.++
T Consensus       141 --~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         141 --EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccccceeee
Confidence              69999999995 6666554  467899999999999999999888775

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=8.1e-17  Score=123.14  Aligned_cols=101  Identities=12%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE--eee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM--NAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~--~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~   75 (143)
                      ++|||||++||+|+  .||+|+|||+.+.+..  ..+  +..+|.+++|+|||++|++++..    .+..++||+.+ ++
T Consensus        64 ~~~sp~g~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~----~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          64 AKTSPSGYYCASGD--VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG----RERFGHVFLFDTGT  137 (311)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC----SSCSEEEEETTTCC
T ss_pred             EEEeCCCCeEeccc--cCceEeeeeeeccccccccccccccCcccccccccccccccccccc----cccccccccccccc
Confidence            47999999999999  6999999998875422  222  34689999999999999999842    35678999995 66


Q ss_pred             EEEec--cCCcEEEEEEeeCCCe-eeecCchhhHH
Q psy5876          76 IIKRF--NSPTFCQLRWRPRPAS-LLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~--~~~~v~~l~wsP~~~~-l~s~s~d~~i~  107 (143)
                      .+...  +...|.+++|+|+++. +++++.|+.|+
T Consensus       138 ~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1         138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccceeeecccccccccc
Confidence            66554  4678999999999985 78899999876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.9e-16  Score=117.27  Aligned_cols=98  Identities=22%  Similarity=0.345  Sum_probs=80.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEee---eccCceEEEEECCCC----------CEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA---AEHHQATDVEWDPTG----------RYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~---~~~~~v~~i~wsPdG----------~~lat~s~~~~~~~D~~i   67 (143)
                      ++|||||++|++|+  .||.|++||+.+++.+..   .|...|++++|+|++          ++||||+      .|+.+
T Consensus       168 ~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs------~D~~i  239 (287)
T d1pgua2         168 ISISPSETYIAAGD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS------LDTNI  239 (287)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE------TTSCE
T ss_pred             EEeccCcccccccc--ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec------CCCeE
Confidence            47999999999999  699999999998876543   234679999999754          6899999      69999


Q ss_pred             EEEeec--CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          68 WQWSFQ--GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        68 ~iW~~~--g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +|||++  ++++...  |...|.+++|+|++ .|+|++.|+.||
T Consensus       240 ~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~  282 (287)
T d1pgua2         240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK  282 (287)
T ss_dssp             EEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             EEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence            999984  4455543  57799999999987 599999998774

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9.8e-17  Score=122.67  Aligned_cols=99  Identities=13%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE------------Eee--eccCceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV------------MNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTG   66 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~------------~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~   66 (143)
                      ++|+|+|++|++++  .||.|++||+.+++.            ...  .+...|++++|+|+|++|++|+      .|+.
T Consensus       260 l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~------~dg~  331 (388)
T d1erja_         260 VVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS------KDRG  331 (388)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE------TTSE
T ss_pred             EEECCCCCEEEEEE--CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe------CCCE
Confidence            47999999999999  699999999875332            111  1235799999999999999999      6999


Q ss_pred             EEEEee-cCcEEEec--cCCcEEEEE------EeeCCCeeeecCchhhHH
Q psy5876          67 YWQWSF-QGKIIKRF--NSPTFCQLR------WRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        67 i~iW~~-~g~~l~~~--~~~~v~~l~------wsP~~~~l~s~s~d~~i~  107 (143)
                      |++||+ +|+++..+  |.+.|.+++      |+|+++.|+|++.|++|+
T Consensus       332 i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~  381 (388)
T d1erja_         332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR  381 (388)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEE
Confidence            999999 58888765  467898887      478999999999999875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=2.6e-16  Score=117.02  Aligned_cols=99  Identities=10%  Similarity=0.186  Sum_probs=82.6

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--ee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++|+|||++|++++  .||.|++||+.+.+...  .. +...|++++|+|+|++|++++      .|+.+++||+. +..
T Consensus       142 ~~~s~~~~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         142 VALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD------QSRKVIPYSVANNFE  213 (299)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSCEEEEEGGGTTE
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccc
Confidence            47899999999998  69999999988765432  22 346799999999999999999      68999999995 555


Q ss_pred             EEec-----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          77 IKRF-----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        77 l~~~-----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +...     +...|.+++|+|+++.|++++.|+.|+
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~  249 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI  249 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccccccceEEEcCCCEEE
Confidence            5432     356899999999999999999999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=4.1e-17  Score=127.40  Aligned_cols=94  Identities=13%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             CeEecCCCEEEEEecCCCC---eEEEEECCCceEEeee---------------ccCceEEEEECCCCCEEEEeecCccee
Q psy5876           1 MKLRMRGTHIVLAELRDTG---SLEFVDTGDFSVMNAA---------------EHHQATDVEWDPTGRYVMSGVSLWKTK   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg---~i~iWd~~~~~~~~~~---------------~~~~v~~i~wsPdG~~lat~s~~~~~~   62 (143)
                      |+|||||++|++|+.  |+   .|++||+.+++++..+               |...|++++|+|||++|||+|      
T Consensus       237 l~~spdg~~l~sgs~--D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s------  308 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHD--SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------  308 (393)
T ss_dssp             EEECSSTTEEEEEEE--ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------
T ss_pred             cccccccceeeeecC--CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC------
Confidence            479999999999984  55   5999999988766543               224699999999999999999      


Q ss_pred             cCCcEEEEee-cCcEEEec--cCCcE----EEEEEeeCCCeeeecCc
Q psy5876          63 ADTGYWQWSF-QGKIIKRF--NSPTF----CQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        63 ~D~~i~iW~~-~g~~l~~~--~~~~v----~~l~wsP~~~~l~s~s~  102 (143)
                      .|++|+|||+ +|++++.+  |.+.|    ..++|+|++..+++++.
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            6999999999 48887764  33334    35778888888877653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.8e-16  Score=116.81  Aligned_cols=99  Identities=10%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|+|+|+++++++  .||.+++||+.+++.+..+.+ ..|.+++|+|+|++|++++      .|+.+++||+. +....
T Consensus       189 l~~s~~~~~~~~~~--~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         189 IDISNDGTKLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTSSCEEE
T ss_pred             cccccccccccccc--ccccccccccccceeecccccccceEEEEEcccccccceec------ccccccccccccccccc
Confidence            47999999999999  689999999999988877654 5799999999999999999      69999999996 44443


Q ss_pred             e-ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 R-FNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~-~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      . .+...|.+++|+|+++.|++++.|+.|+
T Consensus       261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccceEEECCCCCEEEEEeCCCeEE
Confidence            3 3577899999999999999999999876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.7e-15  Score=112.42  Aligned_cols=93  Identities=11%  Similarity=-0.018  Sum_probs=68.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      |+|||||++||+|+  .||+|++||+.+++++..+.   ...|++++|+|+|++++++.       |+.+++|+..+..+
T Consensus        18 l~~s~dg~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~-------d~~v~~~~~~~~~~   88 (299)
T d1nr0a2          18 LSSSADGKTLFSAD--AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW-------DDHLKVVPAGGSGV   88 (299)
T ss_dssp             EEECTTSSEEEEEE--TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET-------TTEEEEECSSSSSS
T ss_pred             EEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc-------eeeEEEeccCCccc
Confidence            58999999999999  69999999999988777652   35799999999999776655       88899998754322


Q ss_pred             E------eccCCcEEEEEEeeCCCeeeecCc
Q psy5876          78 K------RFNSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~------~~~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .      ......+..++|+|++..++.++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~  119 (299)
T d1nr0a2          89 DSSKAVANKLSSQPLGLAVSADGDIAVAACY  119 (299)
T ss_dssp             CTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            1      112345566666666665555443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=7.8e-15  Score=108.89  Aligned_cols=98  Identities=10%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      .+.|+++++++++  .|+.|++||+.+++++.++.  ...|++++|+|+|++|++|+      .|+.+++|++. +..+.
T Consensus       191 ~~~~~~~~~~~~~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s------~d~~i~~~~~~~~~~~~  262 (340)
T d1tbga_         191 SLAPDTRLFVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS------DDATCRLFDLRADQELM  262 (340)
T ss_dssp             EECTTSSEEEEEE--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEE
T ss_pred             ccccccceeEEee--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeeccccccc
Confidence            4678999999998  69999999999999887764  35799999999999999999      69999999996 44444


Q ss_pred             ec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RF----NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ..    +...|..++|+|+++.|++++.|+.|+
T Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~  295 (340)
T d1tbga_         263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             EECCTTCCSCEEEEEECSSSCEEEEEETTSCEE
T ss_pred             ccccccccCceEEEEECCCCCEEEEEECCCEEE
Confidence            32    245799999999999999999999886

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.59  E-value=2.4e-15  Score=113.01  Aligned_cols=95  Identities=7%  Similarity=-0.033  Sum_probs=75.9

Q ss_pred             CeEecCCCEEEEEecCCC-CeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDT-GSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~d-g~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      ++|||||++|++++. .+ ..|++||.++++.....+ ...+..++|||||++|++++      .++.+++|+.+ +++.
T Consensus        48 ~~~spDg~~l~~~~~-~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          48 VRRGGDTKVAFIHGT-REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN------DRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEECSSSEEEEEEEE-TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEEc-CCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceec------ccccccccccccccee
Confidence            589999999998774 23 379999999887665443 45799999999999999999      68999999996 4443


Q ss_pred             Ee--ccCCcEEEEEEeeCCCeeeecCc
Q psy5876          78 KR--FNSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~~--~~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ..  .+...+.+++|+|+|+.|+..+.
T Consensus       121 ~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3         121 VIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             EEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             eeeecccccccchhhccceeeeeeecc
Confidence            33  34567889999999999986543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.1e-15  Score=107.94  Aligned_cols=99  Identities=17%  Similarity=0.248  Sum_probs=83.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      |+|||+|++||+|+  .||+|+|||+.+++++.++.  ...|.+++|+|+|.++++++      .++.+.+|+.. .+..
T Consensus        23 l~~sp~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   94 (317)
T d1vyhc1          23 VIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS------ADMTIKLWDFQGFECI   94 (317)
T ss_dssp             EEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE------TTSCCCEEETTSSCEE
T ss_pred             EEEcCCCCEEEEEe--CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc------cccccccccccccccc
Confidence            57999999999999  69999999999988777663  35799999999999999999      57888899885 4444


Q ss_pred             Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...  +...+..+.|+|+++.+++++.|+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  126 (317)
T d1vyhc1          95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  126 (317)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             cccccccccceeeeccCCCceEEeeccCccee
Confidence            333  467899999999999999999998765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.9e-15  Score=109.09  Aligned_cols=97  Identities=10%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++|||++||+|+  .||+|++||+.+++++.++.  ...|++++|+|++ +|++|+      .|+.+++|+.. +++..
T Consensus        18 c~~~~~~~l~tgs--~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s------~D~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          18 CLQFEDNYVITGA--DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS------TDRTVRVWDIKKGCCTH   88 (355)
T ss_dssp             EEEEETTEEEEEE--TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEE------TTCCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEe--CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEe------ccccccccccccccccc
Confidence            5789999999999  69999999999999888764  3579999999965 789999      69999999996 44443


Q ss_pred             ecc----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...    ........+.|++..+++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  121 (355)
T d1nexb2          89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  121 (355)
T ss_dssp             EECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccceeeeecCCCcEE
Confidence            322    23466788899999999999998875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=9.6e-15  Score=111.38  Aligned_cols=98  Identities=8%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEEC---CCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWD---PTGRYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~ws---PdG~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      ++|+|| |++|++++  .||.|++||+.+++.+.++.  ...+..+.|+   |||++|++++      .|+.++|||+. 
T Consensus       211 v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s------~D~~i~iwd~~~  282 (325)
T d1pgua1         211 VEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG------ADATIRVWDVTT  282 (325)
T ss_dssp             EEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE------TTSEEEEEETTT
T ss_pred             eeeccccceeccccc--cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe------CCCeEEEEECCC
Confidence            479997 68899998  69999999999998877653  2344444444   6899999999      69999999995 


Q ss_pred             CcEEEec--cCC----cEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKRF--NSP----TFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~--~~~----~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      |+++..+  +..    ....+.|.+++ .|+|++.|++|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~  321 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLN  321 (325)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             CCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEE
Confidence            7777654  222    23455555544 689999998874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.6e-14  Score=104.85  Aligned_cols=99  Identities=8%  Similarity=0.016  Sum_probs=75.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----eEEeee-ccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SVMNAA-EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~~~~~-~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-   73 (143)
                      |+|||+|++||+|+  .||+|+|||+++.    ++.... +..+|++++|+|++ .+|++|+      .|+.+++|+.. 
T Consensus        17 l~fsp~~~~L~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~------~d~~v~~w~~~~   88 (342)
T d1yfqa_          17 IKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT------VQGEILKVDLIG   88 (342)
T ss_dssp             EEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE------TTSCEEEECSSS
T ss_pred             EEEeCCCCEEEEEE--CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc------cccceeeeeccc
Confidence            58999999999999  6999999997643    233333 34679999999975 5788888      69999999995 


Q ss_pred             CcEEEec---cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          74 GKIIKRF---NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        74 g~~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +......   .........+.+++..+++++.++.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE  125 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            3333322   234456677888999999999888764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.2e-14  Score=104.86  Aligned_cols=96  Identities=9%  Similarity=0.197  Sum_probs=75.4

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---c--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---H--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK   75 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~   75 (143)
                      +++|++++|++++  .||.|++||..+.+....+.   .  ..+.+++|  +++++++|+      .|+.|++||+ +|+
T Consensus       222 ~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s------~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         222 GMELKDNILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS------DDGTVKLWDLKTGE  291 (342)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE------TTSEEEEEETTTCC
T ss_pred             EEecCCCEEEEEc--CCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc------CCCEEEEEECCCCC
Confidence            4678888999999  68999999998876655442   1  24555555  567999999      6999999999 588


Q ss_pred             EEEecc-------CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          76 IIKRFN-------SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        76 ~l~~~~-------~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +++.+.       ...|++++|+|++..|+++++|++..
T Consensus       292 ~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~  330 (342)
T d2ovrb2         292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE  330 (342)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred             EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCe
Confidence            876542       34699999999999999999998644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=6.1e-14  Score=106.84  Aligned_cols=98  Identities=18%  Similarity=0.298  Sum_probs=76.2

Q ss_pred             CeEecCCCE-EEEEecCCCCeEEEEECCCceEEeeec-----cCceEEEEECCC-CCEEEEeecCcceecCCcEEEEee-
Q psy5876           1 MKLRMRGTH-IVLAELRDTGSLEFVDTGDFSVMNAAE-----HHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSF-   72 (143)
Q Consensus         1 i~~SPdG~~-las~~~~~dg~i~iWd~~~~~~~~~~~-----~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~-   72 (143)
                      ++|+|++++ +++++  .||.+++||..+++......     ...|++++|+|| |++|++++      .|+.|++||+ 
T Consensus       165 ~~~~~~~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~------~d~~i~iwd~~  236 (325)
T d1pgua1         165 CHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG------SDRKISCFDGK  236 (325)
T ss_dssp             EEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE------TTCCEEEEETT
T ss_pred             ccccccccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccc------cccceeeeeec
Confidence            479999986 55677  69999999998877655431     246999999997 68999999      6999999999 


Q ss_pred             cCcEEEecc--CCc----EEEEEEeeCCCeeeecCchhhHH
Q psy5876          73 QGKIIKRFN--SPT----FCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        73 ~g~~l~~~~--~~~----v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      +++++..+.  ...    +++++| |+|++|++++.|+.|+
T Consensus       237 ~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIR  276 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEE
T ss_pred             cccccccccccccccccceeeeec-cCCCEEEEEeCCCeEE
Confidence            577776643  333    455555 6899999999999886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=99.38  Aligned_cols=96  Identities=13%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++|||++||+|+  .||+|+|||+++++++.++.  ...|++++|  ++++|+||+      .|+.+++|++. +....
T Consensus        20 c~~~d~~~l~sgs--~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s------~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          20 CLQYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS------SDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             EEECCSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE------TTSCEEEEESSSCCEEE
T ss_pred             EEEEcCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccc------ccccccccccccccccc
Confidence            6899999999999  69999999999999888764  357888876  688999999      69999999995 55555


Q ss_pred             eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFNSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...........+.+....++++..++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIA  118 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEE
T ss_pred             cccccccccccccccccceeeccccccee
Confidence            44433333445666777788777766554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=7.2e-14  Score=104.03  Aligned_cols=96  Identities=10%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI   76 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~   76 (143)
                      ++|||+|+||++++  .+++|.+||+.+++++.+..   ...+.+++|+|||++++.++.     .++.|++||.. ++.
T Consensus         2 ~a~~~~~~~l~~~~--~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~-----~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-----HYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET-----TTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEc--CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC-----CCCcEEEEeCccCee
Confidence            57999999999999  68999999999999887643   346889999999999865553     57899999995 766


Q ss_pred             EEeccC--------CcEEEEEEeeCCCeeeecCch
Q psy5876          77 IKRFNS--------PTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        77 l~~~~~--------~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +.....        .....++|+|||+.++..+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence            654321        135689999999998876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.3e-13  Score=99.45  Aligned_cols=99  Identities=10%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l   77 (143)
                      +++|+++.+++++. .++.+++|+....+.....   +...+++++|+|||++|++|+      .|+.+++||+. +..+
T Consensus       125 ~~~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~------~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         125 AVSLSQNYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD------VMGKILLYDLQSREVK  197 (287)
T ss_dssp             EEEECSSEEEEEET-TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEE
T ss_pred             eeeccCcceeeecc-ccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc------ccccccceeecccccc
Confidence            57899999999884 2457999998876554433   235799999999999999999      69999999996 4444


Q ss_pred             Ee---ccCCcEEEEEEeeCC----------CeeeecCchhhHH
Q psy5876          78 KR---FNSPTFCQLRWRPRP----------ASLLSKEQVDKIK  107 (143)
Q Consensus        78 ~~---~~~~~v~~l~wsP~~----------~~l~s~s~d~~i~  107 (143)
                      ..   .|...|.+++|+|.+          ..++|++.|+.|+
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            32   246789999999864          5799999999876

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=5.3e-14  Score=104.18  Aligned_cols=94  Identities=16%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEE-EEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATD-VEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF   80 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~-i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~   80 (143)
                      +++++++|++++  .||+|++||+++++.....++..+.. .+++|++++|++|+       |+.|+|||+ +|++++..
T Consensus       249 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------d~~i~vwd~~tg~~~~~~  319 (355)
T d1nexb2         249 LRLSDKFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-------ENQFNIYNLRSGKLVHAN  319 (355)
T ss_dssp             EEECSSEEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-------TTEEEEEETTTCCBCCSC
T ss_pred             cccccceeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-------CCEEEEEECCCCCEEEEE
Confidence            456678999998  69999999999887776666555544 46788998888877       889999999 58887642


Q ss_pred             ---cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          81 ---NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        81 ---~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                         +...|.+++|+|+ ..+++++.|+++
T Consensus       320 ~~~~~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         320 ILKDADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             TTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             ecCCCCCEEEEEEcCC-eEEEEEECCCcE
Confidence               3568999999987 467788888875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=9.4e-13  Score=96.35  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=75.2

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCce---------EEee--------eccCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFS---------VMNA--------AEHHQATDVEWDPTGRYVMSGVSLWKTKADT   65 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~---------~~~~--------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~   65 (143)
                      +++++..+++++  .||.+.+|+.+...         ....        .+...+++++|+|+|++||||+      .|+
T Consensus       202 ~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~------~Dg  273 (342)
T d1yfqa_         202 LPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG------SDG  273 (342)
T ss_dssp             CSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE------TTS
T ss_pred             ecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC------CCC
Confidence            356778888888  68999999976311         1111        0123689999999999999999      699


Q ss_pred             cEEEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHHh
Q psy5876          66 GYWQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIKK  108 (143)
Q Consensus        66 ~i~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~~  108 (143)
                      .|++||++ ++++.... .+....++|+|+|+.|++++.|..++.
T Consensus       274 ~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~  318 (342)
T d1yfqa_         274 IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred             EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence            99999995 66777664 456677899999999999888777653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.37  E-value=3.2e-13  Score=106.42  Aligned_cols=97  Identities=10%  Similarity=0.028  Sum_probs=71.9

Q ss_pred             EecCCC--EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           3 LRMRGT--HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         3 ~SPdG~--~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      +++|.+  ++++++  .||+|+|||+.+++.+.+++ +..+..++|||||++|++++      .|+++++||++ ++.+.
T Consensus        26 ~~~d~~~~~~V~~~--~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~------~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG------RDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEET--TTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE------TTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe------CCCCEEEEEccCCceeE
Confidence            445544  445554  68999999999999988875 35799999999999999998      58999999995 55332


Q ss_pred             --ecc-----CCcEEEEEEeeCCCeeeecC-chhhHH
Q psy5876          79 --RFN-----SPTFCQLRWRPRPASLLSKE-QVDKIK  107 (143)
Q Consensus        79 --~~~-----~~~v~~l~wsP~~~~l~s~s-~d~~i~  107 (143)
                        +..     .+.+.+.+|+|||++|+.++ .++.++
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence              221     33567788899999876544 555543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-12  Score=94.78  Aligned_cols=94  Identities=16%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      .++++|++|++++  .||+|++||+.+++++.....  ..+.+++|+  +++|++++      .|+.+++||.. ++...
T Consensus       182 ~~~~~~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s------~d~~i~iwd~~~~~~~~  251 (342)
T d2ovrb2         182 SLQFDGIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN------ADSTVKIWDIKTGQCLQ  251 (342)
T ss_dssp             EEEECSSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE------TTSCEEEEETTTCCEEE
T ss_pred             cccCCCCEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEc------CCCEEEEEecccccccc
Confidence            4678999999999  699999999999888776643  346666554  57999999      69999999995 44443


Q ss_pred             ecc-----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN-----SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...     ...+.+++  +++..+++++.|+.|+
T Consensus       252 ~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~  283 (342)
T d2ovrb2         252 TLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVK  283 (342)
T ss_dssp             EECSTTSCSSCEEEEE--ECSSEEEEEETTSEEE
T ss_pred             cccccceeeeceeecc--cCCCeeEEEcCCCEEE
Confidence            322     33555554  4567999999999887

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3e-12  Score=92.11  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=73.9

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-------
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-------   74 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-------   74 (143)
                      .+++++.+|++++  .||+|++||+.+.+.+............+++++.+|++++      .|+.+++||+..       
T Consensus       183 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~  254 (293)
T d1p22a2         183 CLQYRDRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA------YDGKIKVWDLVAALDPRAP  254 (293)
T ss_dssp             EEEEETTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE------TTSCEEEEEHHHHTSTTSC
T ss_pred             cccCCCCeEEEec--CCCEEEEEecccceeeeeecccceeeeeccccceEEEEEc------CCCEEEEEECCCCcccccc
Confidence            3567788999998  6999999999998887766433222335788999999999      699999999732       


Q ss_pred             ---cEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          75 ---KIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        75 ---~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                         .++...  |...|.+++|  +|..|+|++.|++|+
T Consensus       255 ~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~  290 (293)
T d1p22a2         255 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL  290 (293)
T ss_dssp             TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred             CCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEE
Confidence               234433  4668888888  567899999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=1.6e-12  Score=103.60  Aligned_cols=98  Identities=11%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee-----ccCceEEEEECCCCCEE-EEeecCcceecCCcEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA-----EHHQATDVEWDPTGRYV-MSGVSLWKTKADTGYWQWSF   72 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~-----~~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~iW~~   72 (143)
                      ++|||||++|++++  .||++++||+.+++  .+...     +...+.+.+|||||++| ++++      .+++++|||.
T Consensus        67 v~fSpDG~~l~~~s--~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~------~~~~v~i~d~  138 (432)
T d1qksa2          67 SRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY------WPPQYVIMDG  138 (432)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ETTEEEEEET
T ss_pred             EEECCCCCEEEEEc--CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC------CCCeEEEEeC
Confidence            47999999999998  68999999988754  22222     12345667889999987 5555      6899999999


Q ss_pred             c-CcEEEecc-------------CCcEEEEEEeeCCCeee-ecCchhhH
Q psy5876          73 Q-GKIIKRFN-------------SPTFCQLRWRPRPASLL-SKEQVDKI  106 (143)
Q Consensus        73 ~-g~~l~~~~-------------~~~v~~l~wsP~~~~l~-s~s~d~~i  106 (143)
                      . ++.+....             ......+.++|+|+.++ +.+++++|
T Consensus       139 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            4 66554321             23567889999998764 55555554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.30  E-value=2.6e-11  Score=88.54  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~   78 (143)
                      ++|||||++|++++. .++.|++||+.+++.+.+++ +..+..++|+|||+++++++.     .++.+.+|+.. ++.+.
T Consensus        37 va~spdG~~l~v~~~-~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          37 AVISPDGTKVYVANA-HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM-----ASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCEEEEEEC-CCCEEEEEECCCCceeeeeecccccccccccccccccccccc-----ccceeeecccccceeee
Confidence            579999999866554 47999999999999888764 356899999999998887764     57789999996 55555


Q ss_pred             ecc-CCcEEEEEEeeCCCeeee-cCchhh
Q psy5876          79 RFN-SPTFCQLRWRPRPASLLS-KEQVDK  105 (143)
Q Consensus        79 ~~~-~~~v~~l~wsP~~~~l~s-~s~d~~  105 (143)
                      ... ......+.|+|+|..++. ...+..
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             eccccccceEEEeecCCCeeeeeeccccc
Confidence            543 567888999999998764 444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=1.6e-12  Score=103.62  Aligned_cols=90  Identities=9%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             EEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc--EEEecc----
Q psy5876          10 IVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK--IIKRFN----   81 (143)
Q Consensus        10 las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~--~l~~~~----   81 (143)
                      +++.+  .+|+|.|||..+++++.+++ +..+..++|||||++|++++      .|+++.+||+. ++  .+.+..    
T Consensus        35 ~v~~~--d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s------~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          35 SVTLR--DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG------RDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEET--TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE------TTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEc------CCCCEEEEEeeCCCceEEEEEecCCC
Confidence            45555  68999999999999988875 35799999999999999998      58999999984 44  333322    


Q ss_pred             -CCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876          82 -SPTFCQLRWRPRPASL-LSKEQVDKIK  107 (143)
Q Consensus        82 -~~~v~~l~wsP~~~~l-~s~s~d~~i~  107 (143)
                       ...+.+.+|+|||++| ++++.+++|+
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence             2345666788899986 6777777664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=1e-12  Score=103.43  Aligned_cols=93  Identities=6%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--ee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++|||||++|++++  .||+|++||+.+++...  +.     +...+.+++|||||+++++++.     .++.+.+||..
T Consensus        67 vafSPDGk~l~~~~--~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~-----~~~~v~i~d~~  139 (426)
T d1hzua2          67 SRMSASGRYLLVIG--RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY-----WPPQFAIMDGE  139 (426)
T ss_dssp             EEECTTSCEEEEEE--TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----ESSEEEEEETT
T ss_pred             EEECCCCCEEEEEe--CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec-----CCCeEEEEcCC
Confidence            57999999999998  58999999998875322  21     1234677889999999877764     58999999995


Q ss_pred             -CcEEEecc-------------CCcEEEEEEeeCCCeeeec
Q psy5876          74 -GKIIKRFN-------------SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        74 -g~~l~~~~-------------~~~v~~l~wsP~~~~l~s~  100 (143)
                       +.++....             ......+..+|++..++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence             55443321             2245667777887766643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=5.4e-12  Score=93.28  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=78.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-------CceEEEEECCCCCEEEEeecCcc------eecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-------HQATDVEWDPTGRYVMSGVSLWK------TKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-------~~v~~i~wsPdG~~lat~s~~~~------~~~D~~i   67 (143)
                      ++|||||++|++++. .+|.|.+||+.+++.+.+...       ..+..++|+|||+++++++....      ...++.+
T Consensus        39 i~~spDg~~l~v~~~-~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  117 (337)
T d1pbyb_          39 PMVAPGGRIAYATVN-KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EEECCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccce
Confidence            579999999865543 489999999999988776431       23457999999999988875321      1246788


Q ss_pred             EEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          68 WQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        68 ~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      .+||.. ++.+.... ...+..++|+|+|+.+++++.+..+
T Consensus       118 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  158 (337)
T d1pbyb_         118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHV  158 (337)
T ss_dssp             EEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEE
T ss_pred             eeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcce
Confidence            899995 55555543 5567789999999999988766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=2.4e-11  Score=90.12  Aligned_cols=98  Identities=8%  Similarity=-0.032  Sum_probs=71.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc----eEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK   75 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~   75 (143)
                      |+|||||++|++++. .|+.|++|+++..    +...... ...+..++|||||++|++++.     .+..+.+|+....
T Consensus        42 la~spDG~~L~v~~~-~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~-----~~~~v~~~~~~~~  115 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVR-PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY-----NAGNVSVTRLEDG  115 (333)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET-----TTTEEEEEEEETT
T ss_pred             EEEeCCCCEEEEEEC-CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc-----CCCceeeeccccc
Confidence            579999999977765 5899999998743    2222222 245778999999999999984     4678899988644


Q ss_pred             EEE-e----ccCCcEEEEEEeeCCCeeeecCchh
Q psy5876          76 IIK-R----FNSPTFCQLRWRPRPASLLSKEQVD  104 (143)
Q Consensus        76 ~l~-~----~~~~~v~~l~wsP~~~~l~s~s~d~  104 (143)
                      ... .    .+...+.++.++|+++.++.++...
T Consensus       116 ~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_         116 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             cceecccccCCCccceEEEeeecceeeecccccc
Confidence            322 1    1245678899999999988776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=9.4e-12  Score=91.94  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=70.9

Q ss_pred             CEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEeccC
Q psy5876           8 THIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFNS   82 (143)
Q Consensus         8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~~   82 (143)
                      +||++++  .|++|.+||+.+++++.+..    ...+.+++|||||++++.++.     .++.|.+||+ +|+++.+...
T Consensus         2 ~~~vt~~--~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~-----~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPA--RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN-----KSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEE--TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET-----TTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEc--CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC-----CCCeEEEEECCCCcEEEEEec
Confidence            5889998  68999999999999887652    235789999999999855443     5889999999 5887765431


Q ss_pred             -------CcEEEEEEeeCCCeeeecCchhh
Q psy5876          83 -------PTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        83 -------~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                             ..+..++|+|+++.++.+..+..
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~  104 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVR  104 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEE
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCc
Confidence                   23458999999999988765443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=6.6e-12  Score=99.49  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             eEecCCCEEEEEecC-------CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRMRGTHIVLAELR-------DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~-------~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      +|||||++||.++..       .+|.+.+||+.+++..... +...+..+.|||||++||...       ++.+++|+..
T Consensus        68 ~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-------~~~l~~~~~~  140 (470)
T d2bgra1          68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKIEP  140 (470)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEESST
T ss_pred             EECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee-------cccceEEECC
Confidence            699999999987410       2478899999998754322 235689999999999999977       7789999986


Q ss_pred             -CcEEEecc---CC-----------------cEEEEEEeeCCCeeeecCchhh
Q psy5876          74 -GKIIKRFN---SP-----------------TFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        74 -g~~l~~~~---~~-----------------~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                       |..+....   .+                 ....+.|||||+.|+....|..
T Consensus       141 ~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             CCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence             44333211   11                 2345789999999999876654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=4.6e-11  Score=94.50  Aligned_cols=99  Identities=10%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-------cCceEEEEECCCCCEEEEeecC---cceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-------HHQATDVEWDPTGRYVMSGVSL---WKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~---~~~~~D~~i~iW   70 (143)
                      +.|+|||+++..    .+|.+.+||+.+++....+.       ...+.++.|||||++||.++..   |+...++.+.||
T Consensus        22 ~~W~~d~~~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          22 LRWISDHEYLYK----QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CEECSSSEEEEE----SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CEeCCCCEEEEE----cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            479999998864    36889999999887543221       1368999999999999998742   334456788999


Q ss_pred             eecCcEEEec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876          71 SFQGKIIKRF--NSPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        71 ~~~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      |+.++.+...  +...+....|||||+.|+...+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~  132 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN  132 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecc
Confidence            9987776654  36689999999999999986543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.13  E-value=4.9e-10  Score=81.52  Aligned_cols=91  Identities=9%  Similarity=0.074  Sum_probs=68.5

Q ss_pred             EEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc-CCcE
Q psy5876           9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-SPTF   85 (143)
Q Consensus         9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~-~~~v   85 (143)
                      |+-+++. .|++|.+||+.+++.+.+... ..+..++|||||++|+.++.     .++.|++||+. ++.+.... ....
T Consensus         3 ~~yV~~~-~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~-----~~~~i~v~d~~t~~~~~~~~~~~~~   76 (301)
T d1l0qa2           3 FAYIANS-ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA-----HSNDVSIIDTATNNVIATVPAGSSP   76 (301)
T ss_dssp             EEEEEET-TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEEC-CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEEC-----CCCEEEEEECCCCceeeeeeccccc
Confidence            4444333 489999999999998887754 46889999999999865543     58899999995 77777654 4567


Q ss_pred             EEEEEeeCCCeeeec-Cchhh
Q psy5876          86 CQLRWRPRPASLLSK-EQVDK  105 (143)
Q Consensus        86 ~~l~wsP~~~~l~s~-s~d~~  105 (143)
                      ..++|+|++..++.. ..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~   97 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASST   97 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTE
T ss_pred             cccccccccccccccccccce
Confidence            899999999876654 44433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.5e-10  Score=85.69  Aligned_cols=85  Identities=7%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             EEEecCCCCeEEEEECCC---ceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C-cEE---Eec-
Q psy5876          11 VLAELRDTGSLEFVDTGD---FSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G-KII---KRF-   80 (143)
Q Consensus        11 as~~~~~dg~i~iWd~~~---~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g-~~l---~~~-   80 (143)
                      ++++  .+++|++||+++   .+++...++ ..+..++|||||++|++++.     .|+.|++|++. + ..+   ... 
T Consensus         8 v~~~--~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~-----~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           8 IASP--ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR-----PEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEG--GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET-----TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EECC--CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC-----CCCeEEEEEEeCCCCcEEEeeecc
Confidence            4444  589999999764   245555543 57899999999999976663     58899999995 2 222   222 


Q ss_pred             cCCcEEEEEEeeCCCeeeecCc
Q psy5876          81 NSPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        81 ~~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .......++|+|||+.|+.++.
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEET
T ss_pred             cCCCceEEEEcCCCCEEeeccc
Confidence            2455778999999999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.09  E-value=4.4e-10  Score=85.03  Aligned_cols=101  Identities=11%  Similarity=-0.070  Sum_probs=72.6

Q ss_pred             CeEecCCCEEEEEecC---CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc----eecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK----TKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~----~~~D~~i~iW~~~   73 (143)
                      +++||||+.+++....   ..+.|.+||..+++.+.+++......++|||||++|++++....    ...++.+.+||..
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~  105 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC
Confidence            4789999999875321   24679999999999888776555558999999999999875321    1246789999995


Q ss_pred             -CcEEEecc--CC-------cEEEEEEeeCCCeeeecC
Q psy5876          74 -GKIIKRFN--SP-------TFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 -g~~l~~~~--~~-------~v~~l~wsP~~~~l~s~s  101 (143)
                       ++++....  ..       .-..+.|+|+++.++...
T Consensus       106 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~  143 (373)
T d2madh_         106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence             66665432  11       224688999998776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=1.6e-10  Score=86.64  Aligned_cols=100  Identities=6%  Similarity=-0.035  Sum_probs=71.4

Q ss_pred             eEecCCCEEEEEecC---CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc----eecCCcEEEEeec-
Q psy5876           2 KLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK----TKADTGYWQWSFQ-   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~----~~~D~~i~iW~~~-   73 (143)
                      +.||||+.+++....   .+++|.+||..+++.+.+.+......++|||||++|++++....    ...|+.|.+||.. 
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            468999999876421   35689999999999888775455557999999999887653211    1246789999995 


Q ss_pred             CcEEEecc---------CCcEEEEEEeeCCCeeeecC
Q psy5876          74 GKIIKRFN---------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~~l~~~~---------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ++.+....         ......++|+|++..++..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~  124 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ  124 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec
Confidence            66655421         12235689999999887653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.91  E-value=1.6e-09  Score=79.87  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=59.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~   79 (143)
                      .++|++.+++...   ++.|.+||..+++.+...+. ..+.+++|||||++|++++      .|+.|++||.. ++.+.+
T Consensus       258 ~~~~~~~~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~------~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         258 LRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG------TFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             EECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES------BSSEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEec---CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECccCCEEEE
Confidence            5788999988876   57899999999998876643 5789999999999999998      58999999995 777765


Q ss_pred             c
Q psy5876          80 F   80 (143)
Q Consensus        80 ~   80 (143)
                      .
T Consensus       329 i  329 (346)
T d1jmxb_         329 I  329 (346)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.78  E-value=5.5e-09  Score=79.80  Aligned_cols=98  Identities=11%  Similarity=-0.034  Sum_probs=67.6

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeec--c-------CceEEEEECCCCCEEEEeecCcceec
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAE--H-------HQATDVEWDPTGRYVMSGVSLWKTKA   63 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~--~-------~~v~~i~wsPdG~~lat~s~~~~~~~   63 (143)
                      ++|||||++|++++..        .|++|++||..+++.+....  .       .....++|||||++|+.+..     .
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-----~  144 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-----G  144 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-----S
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-----C
Confidence            4799999999986521        35789999999988766542  1       12346899999999998874     4


Q ss_pred             CCcEEEEeec-CcEEEeccC---------CcEEEEEEeeCCCeeeecCch
Q psy5876          64 DTGYWQWSFQ-GKIIKRFNS---------PTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        64 D~~i~iW~~~-g~~l~~~~~---------~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ++.+.+||+. ++.+.....         .....++++|||..++....+
T Consensus       145 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         145 SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecC
Confidence            7899999995 555544321         122346777888766654433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.75  E-value=5.2e-08  Score=70.48  Aligned_cols=94  Identities=16%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             eEecC--CCEEEEEecCCCCeEEEEECCCceEEe-eeccCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCcE
Q psy5876           2 KLRMR--GTHIVLAELRDTGSLEFVDTGDFSVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGKI   76 (143)
Q Consensus         2 ~~SPd--G~~las~~~~~dg~i~iWd~~~~~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~~   76 (143)
                      ..|||  |+++|-.+   +|.|.+.|+++++... +.........+|||||++||-.+....  .+.  .+.+.+..+..
T Consensus         5 ~~sPdi~G~~v~f~~---~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~--~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC---CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS--SLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE---TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST--TCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe---CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC--CCCceEEEEEEecCCc
Confidence            46999  99999876   6788888998776543 223356788999999999987653110  122  35566666554


Q ss_pred             EEecc---------CCcEEEEEEeeCCCeeeec
Q psy5876          77 IKRFN---------SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        77 l~~~~---------~~~v~~l~wsP~~~~l~s~  100 (143)
                      .....         .......+|+|+|+.|+..
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            44321         1134678999999998854

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.74  E-value=7.5e-08  Score=72.36  Aligned_cols=74  Identities=8%  Similarity=-0.067  Sum_probs=56.4

Q ss_pred             eEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc-CceEEEEECCCCCE--EEEeecCcceecCCcEEEE
Q psy5876           2 KLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRY--VMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         2 ~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~--lat~s~~~~~~~D~~i~iW   70 (143)
                      +++|+|..++.....        .++.+.+||+.+++.+....+ ..+..++|||||++  +++++      .|+.+++|
T Consensus       273 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~------~d~~v~v~  346 (373)
T d2madh_         273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA------GTEVLHIY  346 (373)
T ss_pred             EEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeC------CCCeEEEE
Confidence            577787776543211        357899999999988877654 57899999999995  35666      68999999


Q ss_pred             ee-cCcEEEecc
Q psy5876          71 SF-QGKIIKRFN   81 (143)
Q Consensus        71 ~~-~g~~l~~~~   81 (143)
                      |. +|+.+....
T Consensus       347 D~~tg~~~~~~~  358 (373)
T d2madh_         347 DAGAGDQDQSTV  358 (373)
T ss_pred             ECCCCCEEEEEC
Confidence            99 588887753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=3.2e-08  Score=73.67  Aligned_cols=74  Identities=9%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc-CceEEEEECCCCCE--EEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRY--VMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~--lat~s~~~~~~~D~~i~i   69 (143)
                      ++++|||+.++....+        ....|.+||..+++.+.+.+. ..+.+++|||||++  +++++      .|+.|.+
T Consensus       254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~------~d~~i~v  327 (355)
T d2bbkh_         254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST------GDKTLYI  327 (355)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET------TTTEEEE
T ss_pred             EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEEC------CCCEEEE
Confidence            3688999988776421        124799999999988776643 46889999999983  44544      5899999


Q ss_pred             Eee-cCcEEEec
Q psy5876          70 WSF-QGKIIKRF   80 (143)
Q Consensus        70 W~~-~g~~l~~~   80 (143)
                      ||. +|+++.+.
T Consensus       328 ~D~~tg~~~~~i  339 (355)
T d2bbkh_         328 HDAESGEELRSV  339 (355)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999 68888765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.1e-07  Score=67.29  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             eEecCCCEEEEEecCCCCeEEEE--ECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFV--DTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iW--d~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      .|||||+.++..+. ..|...+|  |...+...............|||||++||-.+..   .....+++++++|....+
T Consensus       177 ~~spdg~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~---~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         177 DVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ---GMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECTTSSEEEEEEE-CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE---TTEEEEEEEETTSCCEEE
T ss_pred             ccccccceeEEEee-cCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC---CCCcEEEEEECCCCCEEE
Confidence            58999999998775 34555554  4555444333334566788999999999876631   123467889999886665


Q ss_pred             cc--CCcEEEEEEeeC
Q psy5876          80 FN--SPTFCQLRWRPR   93 (143)
Q Consensus        80 ~~--~~~v~~l~wsP~   93 (143)
                      +.  ...+...+|+|.
T Consensus       253 lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         253 LPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CCCSSSEEEEEEECCC
T ss_pred             EeCCCCcEEeEEeCCC
Confidence            43  446888999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=1.9e-07  Score=70.95  Aligned_cols=99  Identities=10%  Similarity=-0.111  Sum_probs=65.6

Q ss_pred             eEecCCCEE--EEEecCCCC--eEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCc-c---eecCCcEEEEeec
Q psy5876           2 KLRMRGTHI--VLAELRDTG--SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLW-K---TKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~l--as~~~~~dg--~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~-~---~~~D~~i~iW~~~   73 (143)
                      +.+|||+..  +.... .+|  .+.+||..+++.+.+.+......++|||||++|++++... +   -..|+.|.+||..
T Consensus        26 a~~~~~~~~~v~~~~~-~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~  104 (368)
T d1mdah_          26 GPGAISRRSHITLPAY-FAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             CCCCCTTEEEEEECTT-TCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             ccCCCCcceeEEeecc-CCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence            457888854  33222 234  4667799999887766543344799999999999876321 0   1246789999994


Q ss_pred             -CcEEEecc---------CCcEEEEEEeeCCCeeeecC
Q psy5876          74 -GKIIKRFN---------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 -g~~l~~~~---------~~~v~~l~wsP~~~~l~s~s  101 (143)
                       ++.+....         ...-..++|+|||++|+.+.
T Consensus       105 t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~  142 (368)
T d1mdah_         105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             CCcEeeeecCCccceecccCCccceEECCCCCEEEEEe
Confidence             66665431         11224689999999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.1e-07  Score=74.61  Aligned_cols=95  Identities=12%  Similarity=0.175  Sum_probs=63.5

Q ss_pred             eEecCCCEEEEEecC-------CCCeEEEEECCCceE--Eeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           2 KLRMRGTHIVLAELR-------DTGSLEFVDTGDFSV--MNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         2 ~~SPdG~~las~~~~-------~dg~i~iWd~~~~~~--~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      .|||||++|+.+.-.       ..|.+.++|+.+++.  +...+  ...+....|||||++||-..       ++.+.+.
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-------~~nl~~~  139 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-------ENNIYYC  139 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-------TTEEEEE
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-------cceEEEE
Confidence            589999999886410       247889999887653  32222  23456789999999999887       6677777


Q ss_pred             eecC-cEEEec--c-CCcE-----------------EEEEEeeCCCeeeecCch
Q psy5876          71 SFQG-KIIKRF--N-SPTF-----------------CQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        71 ~~~g-~~l~~~--~-~~~v-----------------~~l~wsP~~~~l~s~s~d  103 (143)
                      +..+ ..++..  . .+.+                 ..+.|||||+.|+....|
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            7643 322211  1 1122                 467899999999987544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.39  E-value=1.4e-06  Score=67.21  Aligned_cols=95  Identities=14%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECC-CceEEe--e---e-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMN--A---A-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~--~---~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      +.|+|||++|++++.+ ...|.+|+.+ ++++..  .   . +......++|+|||+++.....     .++.|.+|+++
T Consensus       150 v~~sPdG~~l~v~d~g-~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e-----~~~~V~v~~~~  223 (365)
T d1jofa_         150 MVFDPTETYLYSADLT-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-----AGNRICEYVID  223 (365)
T ss_dssp             EEECTTSSEEEEEETT-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-----TTTEEEEEEEC
T ss_pred             EEECCCCCEEEEeeCC-CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc-----CCCEEEEEEec
Confidence            4799999999998864 5578888754 333221  1   1 2356899999999999877764     68899999985


Q ss_pred             Cc---EEEe---cc----------------CCcEEEEEEeeCCCeeeecC
Q psy5876          74 GK---IIKR---FN----------------SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        74 g~---~l~~---~~----------------~~~v~~l~wsP~~~~l~s~s  101 (143)
                      +.   .+..   ..                ......+.++|+|+.|....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            32   2211   10                01356899999999988753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.36  E-value=3.4e-06  Score=62.94  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec---CcEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ---GKII   77 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~---g~~l   77 (143)
                      ++++|||+++++..  .+++|..||.+............+..++|+|||+++++..      .++.+..|+.+   +...
T Consensus        33 iAv~pdG~l~vt~~--~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~------~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          33 LASAPDGTIFVTNH--EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW------NADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEE------CTTSCEEEEEECTTSCEE
T ss_pred             EEECCCCCEEEEeC--CCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEec------CCceEEEEEeccccccee
Confidence            47899999888775  5788888886643222222235789999999999888877      36667777764   3322


Q ss_pred             --Eec-cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          78 --KRF-NSPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        78 --~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                        ... .....+.+++.|+|..+++.+....+
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i  136 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAI  136 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccc
Confidence              222 24568899999999999987665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.16  E-value=5.3e-06  Score=66.49  Aligned_cols=94  Identities=10%  Similarity=0.132  Sum_probs=64.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEE-----------e-eec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM-----------N-AAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~-----------~-~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      +.+||||+|+++++. .+++|.+||+++.+..           . ..+ .-.....+|+|+|.-+.+..      .|+.|
T Consensus       263 v~vSPDGkyl~~~~~-~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~------~ds~v  335 (441)
T d1qnia2         263 LNTSPDGKYFIANGK-LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF------IDSQV  335 (441)
T ss_dssp             EEECTTSCEEEEECT-TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET------TTTEE
T ss_pred             ceECCCCCEEEEeCC-cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc------ccceE
Confidence            468999999988776 6899999998753211           1 111 12456789999998777777      69999


Q ss_pred             EEEeec-------Cc----EEEecc-C------CcEEEEEEeeCCCeeeecC
Q psy5876          68 WQWSFQ-------GK----IIKRFN-S------PTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        68 ~iW~~~-------g~----~l~~~~-~------~~v~~l~wsP~~~~l~s~s  101 (143)
                      ..|++.       |.    .+.+.. .      ..+.+.+++|||++|+|++
T Consensus       336 ~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         336 CKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            999974       11    233321 1      1223445899999999993

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.13  E-value=5.3e-06  Score=66.49  Aligned_cols=100  Identities=6%  Similarity=-0.025  Sum_probs=67.3

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeee--c-cCceEEEEECCCCC--EEEEeecCcc--------eecCCc---
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E-HHQATDVEWDPTGR--YVMSGVSLWK--------TKADTG---   66 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~-~~~v~~i~wsPdG~--~lat~s~~~~--------~~~D~~---   66 (143)
                      .+|||++|.++.. .++.|.++|++++++....  + ...+..++|+|||+  |++..+....        +..+..   
T Consensus        79 gtpDGr~lfV~d~-~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          79 GRYDGKYLFINDK-ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             TEEEEEEEEEEET-TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred             ccCCCCEEEEEcC-CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence            3799999988876 5889999999999876543  3 35789999999999  6665553211        011122   


Q ss_pred             EEEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCch
Q psy5876          67 YWQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        67 i~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      +..+|.. .+...+.. ......+.|+|+|++++..+..
T Consensus       158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence            2334543 23333332 3457789999999999876644

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.04  E-value=1.3e-05  Score=61.62  Aligned_cols=105  Identities=10%  Similarity=-0.009  Sum_probs=63.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCce--EEee---ec----------------cCceEEEEECCCCCEEEEeecCc
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNA---AE----------------HHQATDVEWDPTGRYVMSGVSLW   59 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~---~~----------------~~~v~~i~wsPdG~~lat~s~~~   59 (143)
                      +.|+|||+++.+... .+++|.+|+.+..+  .+..   ..                ......+.++|||++|+++....
T Consensus       198 i~f~pdg~~~yv~~e-~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         198 VAMHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEECCCCceEEEecc-CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            479999999977765 58999999976432  1111   10                01356899999999998875310


Q ss_pred             ceecCCcEEEEeec--CcEEE-----ecc--CCcEEEEEEee-CCCeeeec-CchhhH
Q psy5876          60 KTKADTGYWQWSFQ--GKIIK-----RFN--SPTFCQLRWRP-RPASLLSK-EQVDKI  106 (143)
Q Consensus        60 ~~~~D~~i~iW~~~--g~~l~-----~~~--~~~v~~l~wsP-~~~~l~s~-s~d~~i  106 (143)
                      .......+.+|++.  |....     ...  ...-..++++| +|++|+.+ ..+..|
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v  334 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeE
Confidence            00011236667763  33221     111  23456789999 78977654 445544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.95  E-value=5e-05  Score=54.13  Aligned_cols=97  Identities=12%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             eEecCCCEEEEEecC--CC--CeEEEEECCCceEEee--ec------cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           2 KLRMRGTHIVLAELR--DT--GSLEFVDTGDFSVMNA--AE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         2 ~~SPdG~~las~~~~--~d--g~i~iWd~~~~~~~~~--~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      +|||||++||-....  .+  +.|.+.+..+++...-  ..      .......+|+|||+.|+.............+..
T Consensus        47 ~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  126 (281)
T d1k32a2          47 RFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYR  126 (281)
T ss_dssp             EECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEE
T ss_pred             EECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeee
Confidence            699999999975421  11  2477777777664331  11      124568899999999987654221112233455


Q ss_pred             EeecCcEEEeccCCcEEEEEEeeCCCeeee
Q psy5876          70 WSFQGKIIKRFNSPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        70 W~~~g~~l~~~~~~~v~~l~wsP~~~~l~s   99 (143)
                      .+.++............. .|.|++..++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  155 (281)
T d1k32a2         127 VENDGINFVPLNLGPATH-ILFADGRRVIG  155 (281)
T ss_dssp             EEGGGTEEEECCSCSCSE-EEEETTEEEEE
T ss_pred             ecCCCceeEEecCCccce-eeecCCCeEEE
Confidence            666666555443333333 44555544443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.9e-06  Score=66.99  Aligned_cols=96  Identities=15%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCce--EEeee---ccCceEEEEECCCCCEEEEeec---CcceecCCcEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA---EHHQATDVEWDPTGRYVMSGVS---LWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~---~~~~v~~i~wsPdG~~lat~s~---~~~~~~D~~i~iW~~~   73 (143)
                      .|.|++.++...   .+|.|.+||+.+++  .+...   +...+....|||||++++....   .|++...+.+.|+|+.
T Consensus        23 ~W~~~~~~~~~~---~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          23 KWISDTEFIYRE---QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CBSSSSCBCCCC---SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEeCCCcEEEEe---CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            588998887543   47899999988654  23222   2235778899999999988764   3444456778899995


Q ss_pred             -CcEEE--ecc--CCcEEEEEEeeCCCeeeec
Q psy5876          74 -GKIIK--RFN--SPTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        74 -g~~l~--~~~--~~~v~~l~wsP~~~~l~s~  100 (143)
                       |....  ...  ...+....|||||+.|+=.
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv  131 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI  131 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEE
Confidence             44322  111  3346668999999998743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00017  Score=51.26  Aligned_cols=94  Identities=9%  Similarity=-0.007  Sum_probs=59.3

Q ss_pred             eEecCCCEEEEEecCCCC--eEEEEECCCceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcE
Q psy5876           2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKI   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~   76 (143)
                      .++++++.+...+. .+|  .|.+.+....... ............|||||++++..+.     ..+...+|..  .+..
T Consensus       133 ~~~~~~~~~~~~~~-~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~i~~~~~~~~~  206 (269)
T d2hqsa1         133 TWFPDSQNLAFTSD-QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS-----NGGQQHIAKQDLATGG  206 (269)
T ss_dssp             EECTTSSEEEEEEC-TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE-----CSSCEEEEEEETTTCC
T ss_pred             ccccccccceeccc-ccCCceEeeeecccccceeeecccccccccccccccceeEEEee-----cCCceeeeEeeccccc
Confidence            46788887776654 355  4555555554322 2223345778899999999998884     3445555554  4443


Q ss_pred             EEec-cCCcEEEEEEeeCCCeeeecC
Q psy5876          77 IKRF-NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        77 l~~~-~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      .... .........|+|||+.|+-.+
T Consensus       207 ~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         207 VQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             EEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             ceEeecCccccceEECCCCCEEEEEE
Confidence            3332 344566789999999998544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.69  E-value=0.00019  Score=53.82  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=67.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC-c---eEEe-----eec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F---SVMN-----AAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~---~~~~-----~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      |+|+|||+.|..+.. ..+.|..||++. +   ....     ... ....-.++++++|+..++..      ..+.|.++
T Consensus       182 ia~s~dg~~lyvad~-~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~------~~g~V~~~  254 (319)
T d2dg1a1         182 IALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY------GQGRVLVF  254 (319)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE------TTTEEEEE
T ss_pred             eeeccccceEEEecc-cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc------CCCEEEEE
Confidence            579999997766554 468899998652 1   1111     111 12467899999999777766      47899999


Q ss_pred             eecCcEEEecc--------CCcEEEEEEeeCCCeeeecCch
Q psy5876          71 SFQGKIIKRFN--------SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        71 ~~~g~~l~~~~--------~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      |.+|+.+.+..        ...+.+++|.|....++..+.+
T Consensus       255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            99999887643        1257799999998877765443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.64  E-value=0.00031  Score=51.34  Aligned_cols=96  Identities=5%  Similarity=0.099  Sum_probs=67.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      ++.|+|+.+++..  ..+.|.++|.+ ++.+.++.    ......|+.+|+|+.+++-+.     .+..|.+|+.+|+.+
T Consensus       163 ~~d~~g~i~v~d~--~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~-----~~~~v~~f~~~G~~~  234 (279)
T d1q7fa_         163 VVNDKQEIFISDN--RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH-----NNFNLTIFTQDGQLI  234 (279)
T ss_dssp             EECSSSEEEEEEG--GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS-----SSCEEEEECTTSCEE
T ss_pred             eeccceeEEeeec--cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECC-----CCcEEEEECCCCCEE
Confidence            4667887776665  46788889865 34555442    234789999999997776542     244689999999987


Q ss_pred             Eecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          78 KRFN----SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        78 ~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ..+.    ...-+.++..|+|..+++. .+..|
T Consensus       235 ~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v  266 (279)
T d1q7fa_         235 SALESKVKHAQCFDVALMDDGSVVLAS-KDYRL  266 (279)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEEE-TTTEE
T ss_pred             EEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCeE
Confidence            6642    3457899999999877764 34433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=0.00041  Score=50.15  Aligned_cols=99  Identities=7%  Similarity=-0.002  Sum_probs=69.5

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      |+++|+|+.+++..  .++.|..+|.+.... ..... ......|+++|+|+.+++..      ..+.+..++.++....
T Consensus       145 i~~~~~g~~~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~------~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         145 VAVDNSGNVYVTDT--DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH------NTNQVVKLLAGSTTST  216 (260)
T ss_dssp             EEECTTCCEEEEEG--GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET------TTTEEEEECTTCSCCE
T ss_pred             eeecCCCCEeeecc--ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec------CCCEEEEEeCCCCeEE
Confidence            46789999777765  468899999775332 22222 24578999999999888776      4667777887665433


Q ss_pred             ecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876          79 RFN---SPTFCQLRWRPRPASLLSKEQVDKIK  107 (143)
Q Consensus        79 ~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~  107 (143)
                      ...   ...-..+++.|+|..+++......|+
T Consensus       217 ~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         217 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             ECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             EEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            322   34567999999999998876666555

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.40  E-value=0.0004  Score=51.18  Aligned_cols=73  Identities=8%  Similarity=0.024  Sum_probs=54.6

Q ss_pred             CceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876          28 DFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-NSPTFCQLRWRPRPASLLSKEQVDK  105 (143)
Q Consensus        28 ~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~  105 (143)
                      ..+.+.+++. ..+..++++|||+.+++..      .++.|..|+.+|...... ....+..++|.|+|..+++......
T Consensus        17 ~~~v~~~~p~~~~~e~iAv~pdG~l~vt~~------~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          17 PAKIITSFPVNTFLENLASAPDGTIFVTNH------EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEEECTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             cccEEEECCCCCCcCCEEECCCCCEEEEeC------CCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            3455666643 3588999999999998877      477888888888754433 3668999999999998888755544


Q ss_pred             H
Q psy5876         106 I  106 (143)
Q Consensus       106 i  106 (143)
                      +
T Consensus        91 ~   91 (302)
T d2p4oa1          91 I   91 (302)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.21  E-value=0.0017  Score=48.42  Aligned_cols=99  Identities=12%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             CeEecCCC----EEEEEecCCCCeEEEEECCC-ceE-----Eeeec---cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGT----HIVLAELRDTGSLEFVDTGD-FSV-----MNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~----~las~~~~~dg~i~iWd~~~-~~~-----~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      |+|+|++.    +|.++.. ..+.|..+|++. +..     ...+.   ....-.++++++|+..++..      ..+.|
T Consensus       177 i~~~~d~d~~~~~lyv~d~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~------~~g~I  249 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW------GSSHI  249 (314)
T ss_dssp             EEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE------TTTEE
T ss_pred             eEECCCCCcceeEEEEEee-cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc------CCCEE
Confidence            46888775    4555543 467788887552 222     11221   12356899999999877765      46789


Q ss_pred             EEEeecC-cEEEec--cCCcEEEEEEeeCCCe-eeecCchhhH
Q psy5876          68 WQWSFQG-KIIKRF--NSPTFCQLRWRPRPAS-LLSKEQVDKI  106 (143)
Q Consensus        68 ~iW~~~g-~~l~~~--~~~~v~~l~wsP~~~~-l~s~s~d~~i  106 (143)
                      .+||.+| +.+...  +.....+++|.|+++. .+|.+..+.|
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            9999974 444433  3467889999999974 4777666555

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.00064  Score=49.06  Aligned_cols=98  Identities=6%  Similarity=0.015  Sum_probs=65.7

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR   79 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~   79 (143)
                      |+++|+|+..++..  ..+.+++++..+...+.... ......++++|+|+++++-.      ..+.+..++..+..+..
T Consensus        62 vav~~~g~i~v~d~--~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~------~~~~~~~~~~~~~~~~~  133 (260)
T d1rwia_          62 LAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADR------GNNRVVKLAAGSKTQTV  133 (260)
T ss_dssp             EEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEG------GGTEEEEECTTCSSCEE
T ss_pred             EEEcCCCCEEEeee--eeceeeeeeeccceeeeeeeeeeecccccccccceeEeecc------ccccccccccccceeee
Confidence            46889998777654  45677777766665554443 24688999999999887655      35566777776654433


Q ss_pred             cc---CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876          80 FN---SPTFCQLRWRPRPASLLSKEQVDKI  106 (143)
Q Consensus        80 ~~---~~~v~~l~wsP~~~~l~s~s~d~~i  106 (143)
                      ..   ......+++.|+|..+++......|
T Consensus       134 ~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i  163 (260)
T d1rwia_         134 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRV  163 (260)
T ss_dssp             CCCCSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred             eeecccCCcceeeecCCCCEeeeccccccc
Confidence            21   3345678889999887776544433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.18  E-value=0.0034  Score=46.65  Aligned_cols=97  Identities=8%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-c-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-E-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK   78 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~   78 (143)
                      ++|.|+|+..++-.  ..|.|.-||.++.+..... + ......++++|||+.+++.....+  ....+...+..+..+.
T Consensus        45 ~~~D~~G~Ly~~D~--~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~--~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          45 LNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQ  120 (319)
T ss_dssp             EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCE
T ss_pred             CEECCCCCEEEEEC--CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCc--cceeEEEEcCCCceee
Confidence            37899999666644  4788988998775543332 2 346789999999998887653211  1233444444444322


Q ss_pred             e-c----cCCcEEEEEEeeCCCeeeecC
Q psy5876          79 R-F----NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        79 ~-~----~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      . .    .....+++++.|+|...++..
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~  148 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDF  148 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred             eeccCCCcccCCcceeEEeccceeeccc
Confidence            1 1    134688899999998777743

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.05  E-value=0.011  Score=43.46  Aligned_cols=91  Identities=14%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCC------c--eEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------F--SVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW   70 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~------~--~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW   70 (143)
                      ++|||+++.+..+.. ..+.|..++.+.      +  .......  ......++.+++|.+.++.-      ..+.|..|
T Consensus       153 ~~~s~d~~~l~~~dt-~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~------~~g~V~~~  225 (295)
T d2ghsa1         153 ICFSPDGTTGYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW------GEGAVDRY  225 (295)
T ss_dssp             EEECTTSCEEEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE------TTTEEEEE
T ss_pred             eeecCCCceEEEeec-ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee------CCCceEEe
Confidence            479999997766654 467888887652      1  1111221  23578899999999777655      36679999


Q ss_pred             eecCcEEEecc--CCcEEEEEEe-eCCCeee
Q psy5876          71 SFQGKIIKRFN--SPTFCQLRWR-PRPASLL   98 (143)
Q Consensus        71 ~~~g~~l~~~~--~~~v~~l~ws-P~~~~l~   98 (143)
                      |.+|+++....  ...+.+++|- |+...|.
T Consensus       226 dp~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         226 DTDGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CTTCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             cCCCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence            99999988764  4679999995 7877665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.95  E-value=0.0058  Score=45.39  Aligned_cols=94  Identities=7%  Similarity=0.003  Sum_probs=64.9

Q ss_pred             CeEecCCCEEEEEecC-----CCCeEEEEECCCceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           1 MKLRMRGTHIVLAELR-----DTGSLEFVDTGDFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         1 i~~SPdG~~las~~~~-----~dg~i~iWd~~~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      ++|.|||+..++....     .+|.|..||.++++......      ......++|+|||..+.++.      ..+++..
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad------~~~~i~~   96 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD------MRLGLLV   96 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE------TTTEEEE
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE------CCCeEEE
Confidence            3689999988775321     14678889988765432211      12357899999999877776      3567888


Q ss_pred             EeecCcEEEecc----C---CcEEEEEEeeCCCeeeec
Q psy5876          70 WSFQGKIIKRFN----S---PTFCQLRWRPRPASLLSK  100 (143)
Q Consensus        70 W~~~g~~l~~~~----~---~~v~~l~wsP~~~~l~s~  100 (143)
                      .+.+|.......    .   +..+++++.|+|...+|.
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            898887543321    1   135789999999988874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.014  Score=42.00  Aligned_cols=92  Identities=10%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII   77 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l   77 (143)
                      +..|+|+.+++..  ..+.+.+++.+ ++.+.++    +......++.+++|+.+++..      ..+.|++|+.+|+.+
T Consensus       120 avd~~G~i~v~~~--~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~------~~~~V~~~d~~G~~~  190 (279)
T d1q7fa_         120 TVDNKGRIIVVEC--KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN------RAHCVKVFNYEGQYL  190 (279)
T ss_dssp             EECTTSCEEEEET--TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG------GGTEEEEEETTCCEE
T ss_pred             ccccCCcEEEEee--ccceeeEeccC-CceeecccccccccccceeeeccceeEEeeec------cccceeeeecCCcee
Confidence            3456666555543  24555556544 3444443    124578899999998877766      467899999999988


Q ss_pred             Eecc----CCcEEEEEEeeCCCeeeecCc
Q psy5876          78 KRFN----SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        78 ~~~~----~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      .+..    ...-..+++.|+|..+++.+.
T Consensus       191 ~~~g~~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             eeecccccccCCcccccccCCeEEEEECC
Confidence            7753    345788999999998887543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.013  Score=45.08  Aligned_cols=97  Identities=9%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             eEecCCCEEEEEec-C--CCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCcc----------eecCCcE
Q psy5876           2 KLRMRGTHIVLAEL-R--DTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWK----------TKADTGY   67 (143)
Q Consensus         2 ~~SPdG~~las~~~-~--~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~----------~~~D~~i   67 (143)
                      ++||||++||.+-. +  ..-++++.|+.+++.+.. ++......++|++||+.|.-..-...          ......+
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            57999999997531 1  224899999999987642 22222367899999998764431100          0012245


Q ss_pred             EEEeec-----CcEEEeccC--CcEEEEEEeeCCCeee
Q psy5876          68 WQWSFQ-----GKIIKRFNS--PTFCQLRWRPRPASLL   98 (143)
Q Consensus        68 ~iW~~~-----g~~l~~~~~--~~v~~l~wsP~~~~l~   98 (143)
                      +.+.+.     ..++.....  ..+..+..+++++.++
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence            566552     124554432  3466777888998876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.82  E-value=0.068  Score=38.89  Aligned_cols=91  Identities=9%  Similarity=0.015  Sum_probs=62.0

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE--
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK--   78 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~--   78 (143)
                      .|.|..+.|.-... ..+.|.-||..+++...-.....+..+++.++|++++++        .+++.++|.. |+...  
T Consensus        24 ~wd~~~~~l~wvDi-~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~--------~~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          24 TFDPASGTAWWFNI-LERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS--------DDGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEETTTTEEEEEEG-GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE--------TTEEEEEETTTCCEEEEE
T ss_pred             eEECCCCEEEEEEC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE--------eCccEEeecccceeeEEe
Confidence            47776665554444 468899999888764322123568899999999888753        3478899986 54322  


Q ss_pred             ecc----CCcEEEEEEeeCCCeeeecC
Q psy5876          79 RFN----SPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        79 ~~~----~~~v~~l~wsP~~~~l~s~s  101 (143)
                      ...    ...++++..-|+|...++..
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~  121 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTM  121 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEec
Confidence            111    23689999999999777653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.53  E-value=0.066  Score=39.23  Aligned_cols=95  Identities=8%  Similarity=-0.006  Sum_probs=61.5

Q ss_pred             ecCCCEEEEEecCCC---C------eEEEEECCCce--EEe---eeccCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876           4 RMRGTHIVLAELRDT---G------SLEFVDTGDFS--VMN---AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ   69 (143)
Q Consensus         4 SPdG~~las~~~~~d---g------~i~iWd~~~~~--~~~---~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i   69 (143)
                      ..||+.++.||.+.+   +      .+.+||..+.+  .+.   ..++..+...++.+||+.++.|+.     ..+.+.+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~-----~~~~~~~  102 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN-----DAKKTSL  102 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS-----STTCEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC-----CCcceeE
Confidence            358899998885311   1      47899987643  211   112234567789999999999985     3467899


Q ss_pred             EeecCcEEEec---c-CCcEEEEEEeeCCCeeeecCch
Q psy5876          70 WSFQGKIIKRF---N-SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        70 W~~~g~~l~~~---~-~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ||.....-...   . ...-...+..+||+.++.++..
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeecccc
Confidence            99964433322   1 2223456778899999988753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.71  E-value=0.12  Score=40.21  Aligned_cols=101  Identities=11%  Similarity=0.057  Sum_probs=58.3

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec--------cCceEEEEECCC----CCEEEEeecCc-ce---e
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE--------HHQATDVEWDPT----GRYVMSGVSLW-KT---K   62 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~--------~~~v~~i~wsPd----G~~lat~s~~~-~~---~   62 (143)
                      |+|.|||+.|++--  ..|.|++++..+++.  +....        .....+|+++|+    +...++.+... ..   .
T Consensus        32 la~~pdg~llVter--~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~~  109 (450)
T d1crua_          32 LLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (450)
T ss_dssp             EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             EEEeCCCeEEEEEe--cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCcccc
Confidence            57999999998763  369999998776543  22221        146789999996    43334332100 00   0


Q ss_pred             cCCcEEE--EeecCc--------EE-Eecc---CCcEEEEEEeeCCCeeeecCch
Q psy5876          63 ADTGYWQ--WSFQGK--------II-KRFN---SPTFCQLRWRPRPASLLSKEQV  103 (143)
Q Consensus        63 ~D~~i~i--W~~~g~--------~l-~~~~---~~~v~~l~wsP~~~~l~s~s~d  103 (143)
                      ..+...+  +..++.        .+ ....   .+.-..|.|.|||...++.++.
T Consensus       110 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~  164 (450)
T d1crua_         110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (450)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             cccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence            0112223  333221        11 1111   3467899999999999987754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.52  E-value=0.3  Score=38.37  Aligned_cols=94  Identities=13%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCceE------------Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV------------MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY   67 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~------------~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i   67 (143)
                      +..||||+|+++++. .+.++.+.|+.+...            ....+ ......-+|+..|. ..|.--     .|..+
T Consensus       280 V~vSPDGKyi~VaGK-Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslf-----ids~v  352 (459)
T d1fwxa2         280 CNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLF-----LDSQV  352 (459)
T ss_dssp             EEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEET-----TTTEE
T ss_pred             eEECCCCCEEEEeCC-cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-EEEEee-----ccceE
Confidence            357999999999987 799999999874211            11112 23567889999984 333332     68999


Q ss_pred             EEEeecC-----------cEEEecc-CCcEEEE------EEeeCCCeeeecC
Q psy5876          68 WQWSFQG-----------KIIKRFN-SPTFCQL------RWRPRPASLLSKE  101 (143)
Q Consensus        68 ~iW~~~g-----------~~l~~~~-~~~v~~l------~wsP~~~~l~s~s  101 (143)
                      .-|+++.           ..+.+.. .-.+-++      .-.|+|++|++..
T Consensus       353 ~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         353 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            9999831           2233332 2233333      2378899998864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.30  E-value=0.55  Score=36.79  Aligned_cols=97  Identities=8%  Similarity=-0.058  Sum_probs=62.9

Q ss_pred             cCCCEEEEEecCCCCeEEEEECCCceEEe--eec-cCceEEEEECCCCC--EEEEeecCcce-ecC-----------CcE
Q psy5876           5 MRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAE-HHQATDVEWDPTGR--YVMSGVSLWKT-KAD-----------TGY   67 (143)
Q Consensus         5 PdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~-~~~v~~i~wsPdG~--~lat~s~~~~~-~~D-----------~~i   67 (143)
                      +||+||.+... .++.|-+-|++++++..  +.+ ...+-.++..++++  |+++++..... ..|           +.+
T Consensus        97 yDGrylFVNDk-an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          97 YDGRFLFMNDK-ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEET-TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             cceeEEEEEcC-CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            68999999876 58899999999988744  433 24566677765554  88877753210 001           224


Q ss_pred             EEEeecCc-EEEecc-CCcEEEEEEeeCCCeeeecCc
Q psy5876          68 WQWSFQGK-IIKRFN-SPTFCQLRWRPRPASLLSKEQ  102 (143)
Q Consensus        68 ~iW~~~g~-~l~~~~-~~~v~~l~wsP~~~~l~s~s~  102 (143)
                      ...|.+.. ...+.. ......+.++|+|+++++.+.
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            45566433 333333 345668999999999998654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.76  E-value=1.3  Score=32.80  Aligned_cols=76  Identities=12%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             CeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEE--ecc-CCcEEEEEEeeC
Q psy5876          19 GSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIK--RFN-SPTFCQLRWRPR   93 (143)
Q Consensus        19 g~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~--~~~-~~~v~~l~wsP~   93 (143)
                      |.+..||....+.+... ....+.|++|||+++|..+..     ....|+.|+.++.  +..  ... ....-.+.+.|.
T Consensus       188 g~v~~~~~~~~~~~~~~-l~~pNGI~~s~d~~~lyVa~t-----~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~  261 (340)
T d1v04a_         188 SFVTYYSPNDVRVVAEG-FDFANGINISPDGKYVYIAEL-----LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV  261 (340)
T ss_dssp             EEEEEECSSCEEEEEEE-ESSEEEEEECTTSSEEEEEEG-----GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred             eeEEEEcCCceEEEcCC-CCccceeEECCCCCEEEEEeC-----CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence            45566666554444332 356899999999999988875     5678888888533  221  112 233455666654


Q ss_pred             CCeeeec
Q psy5876          94 PASLLSK  100 (143)
Q Consensus        94 ~~~l~s~  100 (143)
                      +..+..+
T Consensus       262 ~g~lwva  268 (340)
T d1v04a_         262 TGDLWVG  268 (340)
T ss_dssp             TCCEEEE
T ss_pred             CCEEEEE
Confidence            3333333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.39  E-value=0.92  Score=32.65  Aligned_cols=71  Identities=13%  Similarity=-0.010  Sum_probs=45.1

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEe--eecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ   73 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~   73 (143)
                      ++.+||+.++.|+.+ ..++.+||..+..-..  .... ..--.++..+||+.++.++.......-+.+.+||..
T Consensus        82 ~~~~~g~i~v~Gg~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          82 SMDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             EECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             EEecCCcEEEeecCC-CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            467899999998752 4689999987654322  1111 122357788899999998853211122456677764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.63  E-value=4.2  Score=30.19  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             EecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E--E
Q psy5876           3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I--I   77 (143)
Q Consensus         3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~--l   77 (143)
                      -+|..+.||.-+   ..+++++|+++-+.+..+. ...|.--.|-.+ +.|+-.+       ++.|+=|+++|.  .  +
T Consensus        70 MhP~~~IiALra---g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT-------~taVYHW~~~g~s~P~k~  138 (327)
T d1utca2          70 MNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-------DNAVYHWSMEGESQPVKM  138 (327)
T ss_dssp             ECSSSSEEEEEE---TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEEEEC-------SSEEEEEESSSSCCCEEE
T ss_pred             cCCCCcEEEEec---CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEEEEc-------CCceEEEcccCCCCchhh
Confidence            368899999865   4689999999988887764 356877888855 4555555       567888998663  2  2


Q ss_pred             Eecc----CCcEEEEEEeeCCCeeee
Q psy5876          78 KRFN----SPTFCQLRWRPRPASLLS   99 (143)
Q Consensus        78 ~~~~----~~~v~~l~wsP~~~~l~s   99 (143)
                      +..+    ...|-...-+|+.++++=
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l  164 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLL  164 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEE
T ss_pred             hhhcccccCceEEEEEECCCCCEEEE
Confidence            2222    356888888888888774

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.79  E-value=0.55  Score=35.49  Aligned_cols=59  Identities=12%  Similarity=0.181  Sum_probs=37.4

Q ss_pred             ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe-ccCCcEEEEEEeeCCCeee
Q psy5876          39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR-FNSPTFCQLRWRPRPASLL   98 (143)
Q Consensus        39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~-~~~~~v~~l~wsP~~~~l~   98 (143)
                      .+...++||||+++|-+-+... ..--.++++|+. |+.+.. ........++|.+|++.|+
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G-~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASG-SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETT-CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEE
T ss_pred             eecceEecCCCCEEEEEecccc-CchheeEEeccCcceecccccccccccceEEcCCCCEEE
Confidence            3457789999999986653110 012367889995 555432 1212235689999999886

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.09  E-value=1.4  Score=34.75  Aligned_cols=49  Identities=18%  Similarity=0.191  Sum_probs=34.2

Q ss_pred             CCCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce--EEEEECCCCC-EEEEee
Q psy5876           6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA--TDVEWDPTGR-YVMSGV   56 (143)
Q Consensus         6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v--~~i~wsPdG~-~lat~s   56 (143)
                      .|..|.+++  .||.++-+|.++|+.+-+++. ..+  .=+.|.-||+ ||+..+
T Consensus       487 agglVF~G~--~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         487 AGNVVFQGT--ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             TTTEEEEEC--TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEEC--CCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            566777776  599999999999999876642 111  1245667998 665555

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=4.2  Score=30.66  Aligned_cols=87  Identities=8%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE--
Q psy5876           2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI--   76 (143)
Q Consensus         2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~--   76 (143)
                      +||  +..|+...   ++.+..+++.+........  ..++.++.|+|.. .++...       ++.+.++++. ++.  
T Consensus        93 afs--~d~l~v~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~-------~~~~~~~~l~~~~~~~  159 (381)
T d1xipa_          93 CFH--GDQVLVST---RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNS-------VNDLSALDLRTKSTKQ  159 (381)
T ss_dssp             EEE--TTEEEEEE---SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEET-------TSEEEEEETTTCCEEE
T ss_pred             Eee--CCEEEEEe---CCCEEEEEeeccccccccccccccccceecCCce-eEEEec-------CCCEEEEEeccCcccc
Confidence            454  44666664   5678888877543222211  3568899999974 333333       6677788884 432  


Q ss_pred             EEe----c-cCCcEEEEEEeeCCCeeeecC
Q psy5876          77 IKR----F-NSPTFCQLRWRPRPASLLSKE  101 (143)
Q Consensus        77 l~~----~-~~~~v~~l~wsP~~~~l~s~s  101 (143)
                      +..    . -...+.+++|+|.|..++.+.
T Consensus       160 ~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         160 LAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            221    1 146789999999999988764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.07  E-value=1.5  Score=32.30  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             CeEecCCCEEEEEecCCCCeEEEEECCCc---eEEeeec-cCceEEEEECCC-CCEEEEee
Q psy5876           1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---SVMNAAE-HHQATDVEWDPT-GRYVMSGV   56 (143)
Q Consensus         1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---~~~~~~~-~~~v~~i~wsPd-G~~lat~s   56 (143)
                      |++|||+++|.++.. ..+.|+.|+.+..   +.....+ ....-.+.++++ |.+.+.+.
T Consensus       211 I~~s~d~~~lyVa~t-~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         211 INISPDGKYVYIAEL-LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEECTTSSEEEEEEG-GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             eEECCCCCEEEEEeC-CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            578999999988876 4788999987632   2222222 234678899874 55555443